BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12559
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/558 (43%), Positives = 362/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/558 (43%), Positives = 362/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/558 (43%), Positives = 361/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/558 (43%), Positives = 361/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/558 (43%), Positives = 361/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/558 (43%), Positives = 361/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/558 (43%), Positives = 361/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSG--FEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 438 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 472
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/558 (43%), Positives = 358/558 (64%), Gaps = 15/558 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V +
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS 111
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 112 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 171
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 172 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 231
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I
Sbjct: 232 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PI 289
Query: 241 ENGQEDKKVV-LNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298
+ + +VV ++P +G P ALAFK+ A + G+LT++R Y G L G +YN
Sbjct: 290 KGTTPEGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG 347
Query: 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADP 357
+K RV+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +P
Sbjct: 348 RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEP 407
Query: 358 VVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRME 417
V+ ++I+ D++ S+A+ R +E PTF PE+ T++SGMGEL LEI R++
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLK 467
Query: 418 REYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477
RE+ +GKP+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF
Sbjct: 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEF 525
Query: 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILA 537
++ VG +PK ++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIA 585
Query: 538 AHDPVVSMSIK-AVNNKD 554
SM+IK AV D
Sbjct: 586 G-----SMAIKEAVQKGD 598
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +E PT
Sbjct: 384 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEESPT 437
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ T++SGMGEL LEI R++RE+
Sbjct: 438 FSVSTHPETGSTIISGMGELSLEIIVDRLKREFKV 472
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/552 (43%), Positives = 349/552 (63%), Gaps = 18/552 (3%)
Query: 1 MDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVLDGA 53
MD ME E++RGITI SAAT W + H INIIDTPGHVDFT+EVER++RVLDGA
Sbjct: 49 MDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGA 108
Query: 54 ILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 113
++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N L
Sbjct: 109 VMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPL 168
Query: 114 QIPIGLGSETKGIIDLIQRKAI-YFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 172
Q+ IG G++DL++ KAI + + G E+IPAD+ + A Q LIE AE
Sbjct: 169 QLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEA 228
Query: 173 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232
E L E +L + ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P
Sbjct: 229 SEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSP 288
Query: 233 GEV--TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKG 289
+V N +++G+ D + S D PF ALAFK+ F G LT+ R Y G + G
Sbjct: 289 VDVPAINGILDDGK-DTPAERHASDD--EPFSALAFKIATDPFVGNLTFFRVYSGVVNSG 345
Query: 290 EMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 348
+ + N + R R+V++H+N+ E+++EV AGDI A G+ D +GDT D + I
Sbjct: 346 DTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC-DPDAPII 404
Query: 349 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 408
LE + +PV+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELH
Sbjct: 405 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELH 464
Query: 409 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPL 467
L+I RM+RE+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL
Sbjct: 465 LDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPL 524
Query: 468 PPSANTK-LEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM 526
P +N K EFI++ G +P ++PA+ KG ++ + G L+G V + + L G H
Sbjct: 525 EPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHD 584
Query: 527 VDSNEISFILAA 538
VDS+E++F LAA
Sbjct: 585 VDSSELAFKLAA 596
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I R
Sbjct: 412 EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDR 471
Query: 600 MEREYNC 606
M+RE+N
Sbjct: 472 MKREFNV 478
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/552 (43%), Positives = 349/552 (63%), Gaps = 18/552 (3%)
Query: 1 MDSMELERQRGITIQSAATYTLW-------KDHNINIIDTPGHVDFTVEVERALRVLDGA 53
MD ME E++RGITI SAAT W + H INIIDTPGHVDFT+EVER++RVLDGA
Sbjct: 50 MDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGA 109
Query: 54 ILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 113
++V CAVGGVQ Q+ TV RQ +Y VP IAF+NK+DR+GA+ +V+NQ++ ++G N L
Sbjct: 110 VMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPL 169
Query: 114 QIPIGLGSETKGIIDLIQRKAI-YFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG 172
Q+ IG G++DL++ KAI + + G E+IPAD+ + A Q LIE AE
Sbjct: 170 QLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEA 229
Query: 173 DEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232
E L E +L + ++E +IK A+R+ L + V G+A KNKGVQ +LDAV+DYLP+P
Sbjct: 230 SEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSP 289
Query: 233 GEV--TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKG 289
+V N +++G+ D + S D PF ALAFK+ F G LT+ R Y G + G
Sbjct: 290 VDVPAINGILDDGK-DTPAERHASDD--EPFSALAFKIATDPFVGNLTFFRVYSGVVNSG 346
Query: 290 EMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSIS 348
+ + N + R R+V++H+N+ E+++EV AGDI A G+ D +GDT D + I
Sbjct: 347 DTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLC-DPDAPII 405
Query: 349 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELH 408
LE + +PV+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELH
Sbjct: 406 LERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELH 465
Query: 409 LEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPL 467
L+I RM+RE+N +GKP+VA++ET+ Q D + H KQSGG GQYG V+ + PL
Sbjct: 466 LDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPL 525
Query: 468 PPSANTK-LEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM 526
P +N K EFI++ G +P ++PA+ KG ++ + G L+G V + + L G H
Sbjct: 526 EPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHD 585
Query: 527 VDSNEISFILAA 538
VDS+E++F LAA
Sbjct: 586 VDSSELAFKLAA 597
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+S++++ D++ A+ R KEDP+F + D ES +T+++GMGELHL+I R
Sbjct: 413 EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDR 472
Query: 600 MEREYNC 606
M+RE+N
Sbjct: 473 MKREFNV 479
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/542 (42%), Positives = 348/542 (64%), Gaps = 15/542 (2%)
Query: 17 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76
A T WKDH INIIDTPGHVDFT+EVER++RVLDGAI+V + GV+ Q+ TV RQ ++
Sbjct: 35 AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK 94
Query: 77 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIY 136
Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG GIID+++ KA
Sbjct: 95 YKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYT 154
Query: 137 FEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIR 196
+ LG ++R IP + +A ++L+E A+ DE + +LE + +E+++ AIR
Sbjct: 155 YGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 214
Query: 197 RSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVV-LNPSR 255
+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+P ++ I+ + +VV ++P
Sbjct: 215 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHPDP 272
Query: 256 DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314
+G P ALAFK+ A + G+LT++R Y G L G +YN +K RV+RL+R+H+N
Sbjct: 273 NG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 330
Query: 315 EDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDN 373
E+VEE+ AGD+ A+ G+ + +GDT V + + LESI V +PV+ ++I+ D++
Sbjct: 331 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 390
Query: 374 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAF 433
S+A+ R +EDPTF PE+ +T++SGMGELHLEI R++RE+ +GKP+VA+
Sbjct: 391 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 450
Query: 434 KETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPA 493
+ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK ++PA
Sbjct: 451 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP--RGSGFEFVNAIVGGVIPKEYIPA 508
Query: 494 IIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIK-AVNN 552
+ KG ++ + G L G V +++ L DG VDS+E++F +A SM+IK AV
Sbjct: 509 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAG-----SMAIKEAVQK 563
Query: 553 KD 554
D
Sbjct: 564 GD 565
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 512 VAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 571
+ G +V +D +++S E+ +PV+ ++I+ D++ S+A+ R +EDPT
Sbjct: 351 ITGDTLVGEDAPRVILESIEVP------EPVIDVAIEPKTKADQEKLSQALARLAEEDPT 404
Query: 572 FHFFYDPESKETLVSGMGELHLEIYAQRMEREYNC 606
F PE+ +T++SGMGELHLEI R++RE+
Sbjct: 405 FRVSTHPETGQTIISGMGELHLEIIVDRLKREFKV 439
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 239/606 (39%), Positives = 356/606 (58%), Gaps = 27/606 (4%)
Query: 2 DSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAI 54
D M E++RGITI SAA T WK ++ +N+IDTPGHVDFT+EVER+LRVLDGA+
Sbjct: 54 DWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAV 113
Query: 55 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 114
+V C GV+ Q+ TV RQ +Y VP I ++NK+DR GA+ RV+ Q+++++GH +Q
Sbjct: 114 VVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQ 173
Query: 115 IPIGLGSETKGIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 173
+ IG G +DLI+ KAIY+ + G R EEIPA+LK AE R ++E AE +
Sbjct: 174 LAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEAN 233
Query: 174 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPG 233
E L +LEE +SE +IK+ +R TL + P + G++ KNKGV +LDAV+DYLP P
Sbjct: 234 EELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPT 293
Query: 234 EVTNYAIENGQEDKKVVLNPSR-DGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEM 291
E+ AI+ D + V + D PF +LAFK+ F G LT+ R Y G L G+
Sbjct: 294 EIP--AIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDS 351
Query: 292 IYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 350
+ N KK RV R+V++H+N+ E+++EV AGDI AL G+ D +GDT + + I LE
Sbjct: 352 VLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEK-PIILE 410
Query: 351 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLE 410
+ +PV+S++++ D++ A+ + +EDP+F D ES +T++SGMGELHL+
Sbjct: 411 RMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLD 470
Query: 411 IYAQRMEREYNCPVVLGKPKVAFKETLVQP-FDFDYLHKKQSGGSGQYGRVIGTLEPL-- 467
I RM+RE+ +GKP+VA++ET+ + + + +QSGG GQ+G
Sbjct: 471 IIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADV 530
Query: 468 --PPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNH 525
+ L F +E VG VPK ++PAI KG ++ + G ++G + G++ + DG H
Sbjct: 531 DEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYH 590
Query: 526 MVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQR---FTKEDPTFHFFYDPESKE 582
VDSNE++F +AA SM+ K + K + + + T ED D +
Sbjct: 591 DVDSNEMAFKIAA-----SMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRR 645
Query: 583 TLVSGM 588
L+ GM
Sbjct: 646 GLIQGM 651
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+S++++ D++ A+ + +EDP+F D ES +T++SGMGELHL+I R
Sbjct: 416 EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDR 475
Query: 600 MEREYNC 606
M+RE+
Sbjct: 476 MKREFGV 482
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 329/540 (60%), Gaps = 6/540 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAE 169
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
E + IIDL++ K + LG + EIP D AE R LIE VAE + L E +
Sbjct: 170 DEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKY 229
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
L ++ IS ++K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V
Sbjct: 230 LGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG 289
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK 299
++ V+ + D F ALAFK+ + G+LT+ R Y G + G + N K
Sbjct: 290 HRASNPEEEVIAKADDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGK 348
Query: 300 KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPV 358
+ RV RL+++H+N ++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV
Sbjct: 349 RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPV 407
Query: 359 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMER 418
+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++
Sbjct: 408 IHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 419 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478
E+N +G P V+++ET +QSGG GQYG V +E P EF
Sbjct: 468 EFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFE 525
Query: 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
+ VG VP+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA
Sbjct: 526 NAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAA 585
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I R
Sbjct: 405 EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDR 464
Query: 600 MEREYNC 606
M++E+N
Sbjct: 465 MKKEFNV 471
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/540 (42%), Positives = 329/540 (60%), Gaps = 6/540 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVDFTVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQ 109
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAE 169
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
E + IIDL++ K + LG + EIP D AE R LIE VAE + L E +
Sbjct: 170 DEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKY 229
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
L ++ IS ++K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V
Sbjct: 230 LGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG 289
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK 299
++ V+ + D F ALAFK+ + G+LT+ R Y G + G + N K
Sbjct: 290 HRASNPEEEVIAKADDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGK 348
Query: 300 KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPV 358
+ RV RL+++H+N ++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV
Sbjct: 349 RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPV 407
Query: 359 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMER 418
+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++
Sbjct: 408 IHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 419 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478
E+N +G P V+++ET +QSGG GQYG V +E P EF
Sbjct: 468 EFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFE 525
Query: 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
+ VG VP+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA
Sbjct: 526 NAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAA 585
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I R
Sbjct: 405 EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDR 464
Query: 600 MEREYNC 606
M++E+N
Sbjct: 465 MKKEFNV 471
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/540 (42%), Positives = 328/540 (60%), Gaps = 6/540 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQ 109
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAE 169
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
E + IIDL++ K + LG + EIP D AE R LIE VAE + L E +
Sbjct: 170 DEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKY 229
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
L ++ IS ++K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V
Sbjct: 230 LGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG 289
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK 299
++ V+ + D F ALAFK+ + G+LT+ R Y G + G + N K
Sbjct: 290 HRASNPEEEVIAKADDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGK 348
Query: 300 KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPV 358
+ RV RL+++H+N ++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV
Sbjct: 349 RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPV 407
Query: 359 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMER 418
+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++
Sbjct: 408 IHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 419 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478
E+N +G P V+++ET +QSGG GQYG V +E P EF
Sbjct: 468 EFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFE 525
Query: 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
+ VG VP+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA
Sbjct: 526 NAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAA 585
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I R
Sbjct: 405 EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDR 464
Query: 600 MEREYNC 606
M++E+N
Sbjct: 465 MKKEFNV 471
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/540 (42%), Positives = 328/540 (60%), Gaps = 6/540 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME E+ RGITI SAAT W+ H +NIIDTPGHVD TVEVER+LRVLDGA+ VL A
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQ 109
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ QT TV RQ Y VP I F+NK+D+LGA+ ++ + ++ NAA +Q+PIG
Sbjct: 110 SGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAE 169
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
E + IIDL++ K + LG + EIP D AE R LIE VAE + L E +
Sbjct: 170 DEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKY 229
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240
L ++ IS ++K+AIR++T +F PVL GTA KNKGVQ +LDAV+DYLP+P +V
Sbjct: 230 LGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG 289
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK 299
++ V+ + D F ALAFK+ + G+LT+ R Y G + G + N K
Sbjct: 290 HRASNPEEEVIAKADDSAE-FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGK 348
Query: 300 KVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPV 358
+ RV RL+++H+N ++++ V +GDI A G+ D +GDT +KN+ I LES+ +PV
Sbjct: 349 RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKND-IILESMEFPEPV 407
Query: 359 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMER 418
+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I RM++
Sbjct: 408 IHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 419 EYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478
E+N +G P V+++ET +QSGG GQYG V +E P EF
Sbjct: 468 EFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFE 525
Query: 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
+ VG VP+ ++P++ G K E G L+G + V+ L DG H VDS+E++F +AA
Sbjct: 526 NAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAA 585
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+ +S++ + D+D ++A+ + +EDPTFH D E+ + ++ GMGELHL+I R
Sbjct: 405 EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDR 464
Query: 600 MEREYNC 606
M++E+N
Sbjct: 465 MKKEFNV 471
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/532 (28%), Positives = 265/532 (49%), Gaps = 42/532 (7%)
Query: 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 72
T+++ L++ H + ++D PG+ DF E+ AL D A++ + A GVQ T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 73 QMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQR 132
+R +P + + KLD+ G D Y ++ +R +G + +P+ G + G+ID+
Sbjct: 121 VAERLGLPRMVVVTKLDK-GGDYYALLEDLRSTLGPILP-IDLPLYEGGKWVGLIDVFHG 178
Query: 133 KAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIK 192
KA +E G+ R E+P + ++ + RQE++E + E DE L E +LE + ++ + ++
Sbjct: 179 KAYRYEN--GEE-REAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALE 235
Query: 193 KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLN 252
KA + PV + + + GV LL+ +L+ LP+P E
Sbjct: 236 KAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTE------------------ 277
Query: 253 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 311
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + +VR+ L
Sbjct: 278 --RFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQS--EAGQVRLPHLYVPMG 333
Query: 312 NEMEDVEEVLAGDIFALFGVDCASG-----DTFVTDKNNSISLESIYVADPVVSMSIKAV 366
++ +VEE AG + GV A G + +K S + + DP V +++
Sbjct: 334 KDLLEVEEAEAGFV---LGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPK 390
Query: 367 NNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 426
D +A+++ +EDP+ E+ E L+ G GELHL +R++ +Y V
Sbjct: 391 GRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEF 449
Query: 427 GKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNV 486
PKV ++ET+ + + +KKQ+GG GQYG V LEP ++ F G +
Sbjct: 450 SVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEP-----ASEYGFEWRITGGVI 504
Query: 487 PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
P + AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA
Sbjct: 505 PSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAA 556
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 517 MVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFY 576
MVL G+ +S E+ F DP V +++ D +A+++ +EDP+
Sbjct: 360 MVLWQGEKP--ESEEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLER 416
Query: 577 DPESKETLVSGMGELHLEIYAQRM-----EREYNCPVV 609
E+ E L+ G GELHL +R+ E E++ P V
Sbjct: 417 QEETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKV 454
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 124/435 (28%), Positives = 208/435 (47%), Gaps = 42/435 (9%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D ELE+QRGI++ ++ +KD+ IN++DTPGH DFT + R L +D A+ V+ A
Sbjct: 58 DWXELEKQRGISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAK 117
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
GV+ +T+ + + P FINK DR +++++ + + A + PIG G
Sbjct: 118 GVEPRTIKLXEVCRLRHTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGK 177
Query: 122 ETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFL 181
KGI LI+ AIY P G + R+ ES+R E I + E D+ LG++
Sbjct: 178 YFKGIYHLIE-DAIYLYQP-GKHERV----------GESERIEGINN-PELDKKLGDLAS 224
Query: 182 EEKSISEDDIKKAI-----RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEV 235
E + +E ++ K R L + TP+ G+A+ N GV LLDA + P P G
Sbjct: 225 ELR--NEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRE 282
Query: 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA----GKFGQLTYMRCYQGKLRKGEM 291
TN + +E+K F FK++A G ++ ++R G+ +KG
Sbjct: 283 TNSRLVKPEEEK-------------FSGFVFKIQANXDPGHRDRIAFLRIASGQYQKGXK 329
Query: 292 IYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLE 350
Y+VR K+++++ + + + E+ EE GDI L GDTF + +
Sbjct: 330 AYHVRLKKEIQINNALTFXAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGI 389
Query: 351 SIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLE 410
+ ++ + +K + + K + + ++E T F +S E ++ +G L +
Sbjct: 390 PNFASELFRLVRLK--DPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFD 446
Query: 411 IYAQRMEREYNCPVV 425
+ A R+E EYN V
Sbjct: 447 VVAYRLENEYNVKCV 461
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 560 KAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 609
K + + ++E T F +S E ++ +G L ++ A R+E EYN V
Sbjct: 413 KGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCV 461
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 130/547 (23%), Positives = 246/547 (44%), Gaps = 72/547 (13%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D+ LERQRGITIQ+ T W++ +NIIDTPGH+DF EV R+L VLDGAIL++ A
Sbjct: 43 DNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD 102
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
GVQ+QT + +++ +P I FINK+D+ G D V +++K L +
Sbjct: 103 GVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEK-------------LSA 149
Query: 122 ETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFL 181
E +I++K + N E + V EG++ L E ++
Sbjct: 150 EI-----VIKQKVELYPNVCVTNF---------------TESEQWDTVIEGNDDLLEKYM 189
Query: 182 EEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIE 241
KS+ ++++ P+ G+A N G+ L++ + +
Sbjct: 190 SGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF------------ 237
Query: 242 NGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ-LTYMRCYQGKLRKGEMIYNVRTDKK 300
+ + G FK+E K Q L Y+R Y G L + + V +K
Sbjct: 238 ---------YSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSV-RVSEKEK 287
Query: 301 VRVSRLVRLHSNEMEDVEEVLAGDIFAL----FGVDCASGDTFVTDKNNSISLESIYVAD 356
++V+ + + E+ ++ +G+I L ++ GDT + + I
Sbjct: 288 IKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIE-----NPH 342
Query: 357 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 416
P++ +++ + R+ A+ + DP ++ D + E ++S +G++ +E+ + +
Sbjct: 343 PLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALL 402
Query: 417 EREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 476
+ +Y+ + L +P V + E ++ + +Y + + + + ++ PLP + + E
Sbjct: 403 QEKYHVEIELKEPTVIYMERPLK--NAEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQYE 460
Query: 477 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFIL 536
++G + + F A+++G + CE+G L G V ++ K G + S F +
Sbjct: 461 S-SVSLGY-LNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRM 517
Query: 537 AAHDPVV 543
A P+V
Sbjct: 518 LA--PIV 522
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 192/437 (43%), Gaps = 31/437 (7%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L +D ++V+ A
Sbjct: 58 DWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
GV+ +T + + D P + F+NKLDR DP +++++ ++ A + PIG G
Sbjct: 118 GVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGK 177
Query: 122 ETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFL 181
KG+ L + + ++ G ++ I L +L V E L +
Sbjct: 178 LFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNP------DLDAAVGED---LAQQLR 228
Query: 182 EEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEVTNYAI 240
+E + + + + L + TPV GTAL N GV +LD ++++ P P T+
Sbjct: 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRT 288
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVR 296
EDK F FK++A ++ +MR GK KG + VR
Sbjct: 289 VEASEDK-------------FTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVR 335
Query: 297 TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVA 355
T K V +S + + + VEE GDI L GDTF + + I
Sbjct: 336 TAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFT--QGEMMKFTGIPNF 393
Query: 356 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 415
P + I+ + + K + + + E+ F + + +V +G L ++ R
Sbjct: 394 APELFRRIRLKDPLKQKQLLKGLVQLS-EEGAVQVFRPISNNDLIVGAVGVLQFDVVVAR 452
Query: 416 MEREYNCPVVLGKPKVA 432
++ EYN V VA
Sbjct: 453 LKSEYNVEAVYESVNVA 469
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 192/437 (43%), Gaps = 31/437 (7%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D ME+E+QRGI+I ++ + D +N++DTPGH DF+ + R L +D ++V+ A
Sbjct: 58 DWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
GV+ +T + + D P + F+NKLDR DP +++++ ++ A + PIG G
Sbjct: 118 GVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGK 177
Query: 122 ETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFL 181
KG+ L + + ++ G ++ I L +L V E L +
Sbjct: 178 LFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNP------DLDAAVGED---LAQQLR 228
Query: 182 EEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP-GEVTNYAI 240
+E + + + + L + TPV GTAL N GV +LD ++++ P P T+
Sbjct: 229 DELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRT 288
Query: 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAG----KFGQLTYMRCYQGKLRKGEMIYNVR 296
EDK F FK++A ++ +MR GK KG + VR
Sbjct: 289 VEASEDK-------------FTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVR 335
Query: 297 TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKNNSISLESIYVA 355
T K V +S + + + VEE GDI L GDTF + + I
Sbjct: 336 TAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFT--QGEMMKFTGIPNF 393
Query: 356 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 415
P + I+ + + K + + + E+ F + + +V +G L ++ R
Sbjct: 394 APELFRRIRLKDPLKQKQLLKGLVQLS-EEGAVQVFRPISNNDLIVGAVGVLQFDVVVAR 452
Query: 416 MEREYNCPVVLGKPKVA 432
++ EYN V VA
Sbjct: 453 LKSEYNVEAVYESVNVA 469
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 188/441 (42%), Gaps = 53/441 (12%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D M +ER+RGI++ ++ ++D +N++DTPGH DF+ + R L +D A++V+ A
Sbjct: 76 DWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK 135
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
GV++QT + + P + F+NK+DR P V+ + Q + A + PIG+GS
Sbjct: 136 GVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGS 195
Query: 122 ETKGIIDLIQRKAIYFEGPLG------------DNLRIEEIPADLKKEAESKRQELIEHV 169
KG DL+ ++ F G D+ +++E D +AE R +L
Sbjct: 196 SFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGD---QAEQLRMDL---- 248
Query: 170 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 229
LEE D+ + L + TPV G+A+ N GV+ +LD +++
Sbjct: 249 ---------ALLEEAGTPFDEER------YLKGELTPVFFGSAINNFGVREMLDMFVEFA 293
Query: 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA----GKFGQLTYMRCYQGK 285
P P + + G+ F + FK++A ++ ++R G
Sbjct: 294 PGP------------QPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGT 341
Query: 286 LRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCAS-GDTFVTDKN 344
+G + + RT K V V+ + + VEE GDI + GDTF T+
Sbjct: 342 FTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTF-TESK 400
Query: 345 NSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGM 404
+ I P ++ N K +++ +E F + + ++ +
Sbjct: 401 EVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEG-AVQLFRPLVNNDYILGAV 459
Query: 405 GELHLEIYAQRMEREYNCPVV 425
G L ++ R+ EY V
Sbjct: 460 GVLQFDVIVARLADEYGVDAV 480
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAIL 55
+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+L
Sbjct: 41 LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALL 100
Query: 56 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 110
V+ A GV++QTL D+ + +NK+D ADP RV ++ VG +A
Sbjct: 101 VVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 273 FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD 332
G ++ +R G LRKG+ + + T + RL + + + D E+ G++ L
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRL-GIFTPKQVDRTELKCGEVGWLV--- 259
Query: 333 CA--------SGDTFVTDKNNS-ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTK 383
CA GDT +N + +L P V + V++ D + F A+ + +
Sbjct: 260 CAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSL 319
Query: 384 EDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 434
D + FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 320 NDASL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEI 595
P V + V++ D + F A+ + + D + FY+PES L G +G LH+EI
Sbjct: 293 PQVYAGLFPVSSDDYEAFRDALGKLSLNDASL--FYEPESSSALGFGFRCGFLGLLHMEI 350
Query: 596 YAQRMEREYNCPVV 609
+R+EREY+ ++
Sbjct: 351 IQERLEREYDLDLI 364
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAIL 55
+DSM+LER+RGITI++ + +K + +N IDTPGHVDF+ EV R+L +GA+L
Sbjct: 41 LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALL 100
Query: 56 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNA 110
V+ A GV++QTL D+ + +NK+D ADP RV ++ VG +A
Sbjct: 101 VVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 273 FGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD 332
G ++ +R G LRKG+ + + T + RL + + + D E+ G++ L
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRL-GIFTPKQVDRTELKCGEVGWLV--- 259
Query: 333 CA--------SGDTFVTDKNNS-ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTK 383
CA GDT +N + +L P V + V++ D + F A+ + +
Sbjct: 260 CAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSL 319
Query: 384 EDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 434
D + FY+PES L G +G LH+EI +R+EREY+ ++ P V ++
Sbjct: 320 NDASL--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYE 373
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEI 595
P V + V++ D + F A+ + + D + FY+PES L G +G LH+EI
Sbjct: 293 PQVYAGLFPVSSDDYEAFRDALGKLSLNDASL--FYEPESSSALGFGFRCGFLGLLHMEI 350
Query: 596 YAQRMEREYNCPVV 609
+R+EREY+ ++
Sbjct: 351 IQERLEREYDLDLI 364
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAIL 55
+D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+L
Sbjct: 43 LDTLDVERERGITVKXQAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
Query: 56 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 107
++ A G+++QT+ + D+ I INK+D AD RV Q+ + +G
Sbjct: 103 LIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 36/239 (15%)
Query: 208 LVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 267
++ +A + G++ +L+A+++ +P P D + P AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP---------------------KGDPQKPLKALIFD 199
Query: 268 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 326
+ G + ++R + G+++ G+ I T K+ V+ V + + +++ AGD+
Sbjct: 200 SYYDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTE-VGAQTPKXTKFDKLSAGDVG 258
Query: 327 ALFGV-----DCASGDTFVTDKNNSIS-LESIYVADPVVSMSIKAVNNKDRDNFSKAVQR 380
+ D GDT KN + + A P V I + + A+++
Sbjct: 259 YIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALEK 318
Query: 381 FTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 434
+ D Y+PES L G +G LH EI +R+EREY ++ P V ++
Sbjct: 319 YAINDAAI--VYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR 375
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEI 595
P V I + + A++++ D Y+PES L G +G LH EI
Sbjct: 295 PXVYAGIYPAEDTTYEELRDALEKYAINDAAI--VYEPESSPALGXGFRVGFLGLLHXEI 352
Query: 596 YAQRMEREYNCPVV 609
+R+EREY ++
Sbjct: 353 VQERLEREYGVKII 366
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAIL 55
+D++++ER+RGIT++ A +K + +++IDTPGHVDF+ EV RAL +GA+L
Sbjct: 43 LDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALL 102
Query: 56 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 107
++ A G+++QT+ + D+ I INK+D AD RV Q+ + +G
Sbjct: 103 LIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLG 154
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 36/239 (15%)
Query: 208 LVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFK 267
++ +A + G++ +L+A+++ +P P D + P AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP---------------------KGDPQKPLKALIFD 199
Query: 268 LEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 326
+ G + ++R + G+++ G+ I + T K+ V+ V + +M +++ AGD+
Sbjct: 200 SYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTE-VGAQTPKMTKFDKLSAGDVG 258
Query: 327 ALFGV-----DCASGDTFVTDKNNSIS-LESIYVADPVVSMSIKAVNNKDRDNFSKAVQR 380
+ D GDT KN + + A P+V I + + A+++
Sbjct: 259 YIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEK 318
Query: 381 FTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFK 434
+ D Y+PES L G +G LH+EI +R+EREY ++ P V ++
Sbjct: 319 YAINDAAI--VYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEI 595
P+V I + + A++++ D Y+PES L G +G LH+EI
Sbjct: 295 PMVYAGIYPAEDTTYEELRDALEKYAINDAAI--VYEPESSPALGMGFRVGFLGLLHMEI 352
Query: 596 YAQRMEREYNCPVV 609
+R+EREY ++
Sbjct: 353 VQERLEREYGVKII 366
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 58/315 (18%)
Query: 144 NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 203
N + +EIP L+K +E V +GDE D++ + RK
Sbjct: 290 NFKKDEIPVLLEK---------LEIVLKGDE--------------KDLEGKALLKVVMRK 326
Query: 204 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE----DKKVVLNPSRDGKH 259
F P LL+ ++ +LP+P Y E E D + + D K
Sbjct: 327 FLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKA 376
Query: 260 PFIALAFKL----EAGKFGQLTYMRCYQGKLRKGEMIY----NVRTDKK-----VRVSRL 306
+ K+ + G+F + R + G ++ G+ + N KK + R+
Sbjct: 377 DLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 434
Query: 307 VRLHSNEMEDVEEVLAGDIFALFGVD---CASGDTFVTDKNNSISLESIYVADPVVSMSI 363
V + +E +++ AG+I L G+D +G ++ +++ + V+ PVV +++
Sbjct: 435 VLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVS-PVVQVAV 493
Query: 364 KAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NC 422
+ N D + ++R +K DP Y ES E +V+G GELHLEI Q +E ++
Sbjct: 494 EVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGV 552
Query: 423 PVVLGKPKVAFKETL 437
P+ + P VA++ET+
Sbjct: 553 PLKISPPVVAYRETV 567
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 16/105 (15%)
Query: 2 DSMELERQRGITIQSAAT--YTLWKDHN--------------INIIDTPGHVDFTVEVER 45
D+ + E++RGITI+S A Y+ D + IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 46 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90
ALRV DGA++V+ + GV QT TV RQ + + INK+DR
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 600
PVV ++++ N D + ++R +K DP Y ES E +V+G GELHLEI Q +
Sbjct: 487 PVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDL 545
Query: 601 EREY 604
E ++
Sbjct: 546 EHDH 549
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 58/315 (18%)
Query: 144 NLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 203
N + +EIP L+K +E V +GDE D++ + RK
Sbjct: 290 NFKKDEIPVLLEK---------LEIVLKGDE--------------KDLEGKALLKVVMRK 326
Query: 204 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE----DKKVVLNPSRDGKH 259
F P LL+ ++ +LP+P Y E E D + + D K
Sbjct: 327 FLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKA 376
Query: 260 PFIALAFKL----EAGKFGQLTYMRCYQGKLRKGEMIY----NVRTDKK-----VRVSRL 306
+ K+ + G+F + R + G ++ G+ + N KK + R+
Sbjct: 377 DLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRV 434
Query: 307 VRLHSNEMEDVEEVLAGDIFALFGVD---CASGDTFVTDKNNSISLESIYVADPVVSMSI 363
V + +E +++ AG+I L G+D +G ++ +++ + V+ PVV +++
Sbjct: 435 VLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVS-PVVQVAV 493
Query: 364 KAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NC 422
+ N D + ++R +K DP Y ES E +V+G GELHLEI Q +E ++
Sbjct: 494 EVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDLEHDHAGV 552
Query: 423 PVVLGKPKVAFKETL 437
P+ + P VA++ET+
Sbjct: 553 PLKISPPVVAYRETV 567
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 16/105 (15%)
Query: 2 DSMELERQRGITIQSAAT--YTLWKDHN--------------INIIDTPGHVDFTVEVER 45
D+ + E++RGITI+S A Y+ D + IN+ID+PGHVDF+ EV
Sbjct: 58 DTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTA 117
Query: 46 ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90
ALRV DGA++V+ + GV QT TV RQ + + INK+DR
Sbjct: 118 ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 600
PVV ++++ N D + ++R +K DP Y ES E +V+G GELHLEI Q +
Sbjct: 487 PVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV-LTYMSESGEHIVAGTGELHLEICLQDL 545
Query: 601 EREY 604
E ++
Sbjct: 546 EHDH 549
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70
GIT A D I +DTPGH FT R +V D ILV+ A GV QT+
Sbjct: 40 GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA 99
Query: 71 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 104
K +VP I INK+D+ A+P RV+ ++ +
Sbjct: 100 INHAKAANVPIIVAINKMDKPEANPDRVMQELME 133
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 28 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 87
I +DTPGH F+ R +V D ILV+ A GV QT+ + K VP + INK
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINK 113
Query: 88 LDRLGADPYRVINQM 102
D+ ADP +V ++
Sbjct: 114 CDKAEADPEKVKKEL 128
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70
GIT A + ++ I +DTPGH FT R + D +LV+ A GV QT+
Sbjct: 36 GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA 95
Query: 71 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ------KVGHNAAFLQIPIGLGSETK 124
+ K VP + +NK+D+ ADP RV N++ Q + G + F+ + G+
Sbjct: 96 IQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155
Query: 125 GIIDLIQRKAIYFE 138
++D I +A E
Sbjct: 156 ELLDAILLQAEVLE 169
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61
D + ++RGITI + +++ I ++D PGH D V A ++D A++V+ A
Sbjct: 49 DKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE 108
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ----IPI 117
G ++QT + +++P I I K D G + + + + + + L+ IPI
Sbjct: 109 GPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168
Query: 118 ----GLG-SETKGII-------DLIQRKAIYFEGPL 141
G G E K +I ++I+ YF+ PL
Sbjct: 169 SAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPL 204
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 109 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D PGH D+ + +DGAILV+ A
Sbjct: 51 IDKAPEERARGITINTAHVEYETAKRHYSH-VDCPGHADYIKNMITGAAQMDGAILVVSA 109
Query: 60 VGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89
G QT ++ VP I F+NK+D
Sbjct: 110 ADGPMPQTREHILLARQVGVPYIVVFMNKVD 140
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 26/129 (20%)
Query: 1 MDSMELERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILV 56
+D ++ ER+RGITI A LWK + + +ID PGH DF + D AIL+
Sbjct: 60 LDKLKAERERGITIDIA----LWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILI 115
Query: 57 LCAVGGVQSQTLTVNRQMKRYDVPCIAF----------INKLDRLGADPYRV------IN 100
+ GGV +++ + + +AF +NK+D + D R +
Sbjct: 116 IA--GGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETS 173
Query: 101 QMRQKVGHN 109
+KVG+N
Sbjct: 174 NFIKKVGYN 182
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ++ ER+RG+TI K + IID PGH DF + D AILV+ A
Sbjct: 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK 118
Query: 61 GGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLGADPY 96
G ++V Q + + + I +NK+D L PY
Sbjct: 119 KGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD-LTEPPY 161
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 50 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 109
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 110 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 49 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 108
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 109 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 41 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 100
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 101 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 130
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ E+ RGITI ++ + +D PGH D+ + +DGAILV+ A
Sbjct: 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAAT 393
Query: 61 GGVQSQT---LTVNRQMKRYDVP-CIAFINKLD 89
G QT + + RQ+ VP I F+NK D
Sbjct: 394 DGPMPQTREHILLGRQV---GVPYIIVFLNKCD 423
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ++ ER++GITI A Y I DTPGH +T D AI+++ A
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 61 GGVQSQT 67
GVQ+QT
Sbjct: 139 YGVQTQT 145
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D+ ER RGITI +A Y+ H + D PGH D+ + LDG ILV+ A
Sbjct: 41 IDNAPEERARGITINAAHVEYSTAARHYAHT-DCPGHADYVKNMITGTAPLDGCILVVAA 99
Query: 60 VGGVQSQT---LTVNRQMKRYDVPCIAFINKLD 89
G QT L + RQ+ V + ++NK D
Sbjct: 100 NDGPMPQTREHLLLARQIGVEHV--VVYVNKAD 130
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 205 TPVLVGTALKN----------KGVQTLLDAVLDYLPNP 232
TP++VG+AL K VQ LLDAV Y+P P
Sbjct: 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D+ ER RGITI +A Y+ H + D PGH D+ LDG ILV+ A
Sbjct: 52 IDNAPEERARGITINAAHVEYSTAARHYAHT-DCPGHADYVKNXITGTAPLDGCILVVAA 110
Query: 60 VGGVQSQT---LTVNRQMKRYDVPCIAFINKLD 89
G QT L + RQ+ V + ++NK D
Sbjct: 111 NDGPXPQTREHLLLARQIGVEHV--VVYVNKAD 141
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 10/38 (26%)
Query: 205 TPVLVGTALKN----------KGVQTLLDAVLDYLPNP 232
TP++VG+AL K VQ LLDAV Y+P P
Sbjct: 170 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 207
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 1 MDSMELERQRGITIQSA-ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCA 59
+D ER RGITI +A Y K H + +D GH D+ + +DGAILV+ A
Sbjct: 50 IDKAREERARGITINTAHVEYETAKRHYSH-VDCRGHADYIKNMITGAAQMDGAILVVSA 108
Query: 60 VGGVQSQT---LTVNRQMK-RYDVPCIAFINKLD 89
G QT + + RQ+ RY + F+NK+D
Sbjct: 109 ADGRMRQTREHILLARQVGVRY---IVVFMNKVD 139
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D M+ ER+RGITI K + IID PGH DF + D AILV+ A
Sbjct: 59 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 118
Query: 61 GG 62
G
Sbjct: 119 KG 120
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D M+ ER+RGITI K + IID PGH DF + D AILV+ A
Sbjct: 62 LDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSAR 121
Query: 61 GG 62
G
Sbjct: 122 KG 123
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-- 67
RGITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 44 RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE 103
Query: 68 -LTVNRQMKRYDVP-CIAFINKLD 89
+ + RQ+ VP I F+NK D
Sbjct: 104 HILLGRQV---GVPYIIVFLNKCD 124
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CA 59
MD ER+RG+T+ ++ N I+D PGH DF + D AIL + C+
Sbjct: 220 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 279
Query: 60 VGGVQS 65
+S
Sbjct: 280 TNAFES 285
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CA 59
MD ER+RG+T+ ++ N I+D PGH DF + D AIL + C+
Sbjct: 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCS 145
Query: 60 VGGVQS 65
+S
Sbjct: 146 TNAFES 151
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 31 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90
IDTPGH FT +R + D AIL++ G + QT ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDR 134
Query: 91 L 91
+
Sbjct: 135 I 135
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 31 IDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90
IDTPGH FT +R + D AIL++ G + QT ++ Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDR 134
Query: 91 L 91
+
Sbjct: 135 I 135
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 67
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 68 LTVNRQMKRYDVP-CIAFINKLD 89
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--- 67
GITI ++ + +D PGH D+ + +DGAILV+ A G QT
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 68 LTVNRQMKRYDVP-CIAFINKLD 89
+ + RQ+ VP I F+NK D
Sbjct: 61 ILLGRQV---GVPYIIVFLNKCD 80
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVL-CAV 60
D ER+RG+T+ ++ N I+D PGH DF + D AIL + C+
Sbjct: 87 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCST 146
Query: 61 GGVQS 65
+S
Sbjct: 147 NAFES 151
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNI-NIIDTPGHVDFTVEVERALRVLDGAILVL 57
+D+ E ER RG+T+ A+T T D I I D PGH DF + D A+LV+
Sbjct: 230 LDTTEEERARGVTMDVAST-TFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ + ER +G T++ Y + + I+D PGH F + D A+LV+ A
Sbjct: 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISAR 129
Query: 61 GG 62
G
Sbjct: 130 KG 131
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+DS ER++G T++ Y + +++D PGH + + D +LV+ A
Sbjct: 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 155
Query: 61 GG 62
G
Sbjct: 156 RG 157
>pdb|3TL8|B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|F Chain F, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|K Chain K, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|L Chain L, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 117
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 139 GPLGDNLRIEEIPADLKKEAESKRQELIEHVA-------EGDEILGEMFLEEKSISEDDI 191
GPLG + R + P D ++R ++ A E D L L ++ ++ + +
Sbjct: 1 GPLGSD-RASQTPVDRSPPRVNQRPIRVDRAAMRNRGNDEADAALRG--LVQQGVNLEHL 57
Query: 192 KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLD 223
+ A+ R + R P+ +G+AL+N G+ +D
Sbjct: 58 RTALERHVMQRLPIPLDIGSALQNVGINPSID 89
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 5 ELERQRGITIQSAATYTLWKDHNINIIDTPGH---VDFTVEVERALRVLDGAILVLCAVG 61
E+ER R +Q A + +H +++ PG F+++ +RA G ++ A
Sbjct: 115 EVERYRDSGLQVIAAF----EHEFSLLGLPGERPAAAFSLQAQRAAGQFPGWLVSALAQA 170
Query: 62 GVQSQTLTVNRQMKRYDVPC--IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGL 119
G + + ++Y+V C + DR + V ++ +++G F +P
Sbjct: 171 GTEPEMFLPEYGQRQYEVTCRPAQGVAAADR-AVNVREVTREVARQMGLRTCFAPLP-AP 228
Query: 120 GSETKGI 126
G+ T G+
Sbjct: 229 GAVTNGV 235
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 29 NIIDTPGHVDFTV----EVER----ALRVLDGAILVL------CAVGGVQSQTLTVNRQM 74
IIDTPG +D + E+E+ ALR L I+ + C + L
Sbjct: 217 QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276
Query: 75 KRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 134
+ D+P + INK+D + + + + ++ G N PI + + IDL++ +
Sbjct: 277 EFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN------PIKISALKGTGIDLVKEEI 330
Query: 135 IYFEGPLGDNLRIEEIPADLKK 156
I PL + + E+I +L++
Sbjct: 331 IKTLRPLAEKVAREKIERELRR 352
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 401 VSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE---TLVQPFD---FDYLHKKQSGGS 454
VSG GELHL I + RE + + +P+V E L +PF+ D + Q G
Sbjct: 85 VSGRGELHLSILIENXRRE-GFELAVSRPEVIIXEEDGQLXEPFETVTIDVXEEHQGGIX 143
Query: 455 GQYGRVIGTLEPLPPSANTKL--EFIDETVG 483
G G L P ++ +FI + G
Sbjct: 144 ENIGLRXGELXDXAPDGKGRVRXDFIXPSRG 174
>pdb|2E0T|A Chain A, Crystal Structure Of Catalytic Domain Of Dual Specificity
Phosphatase 26, Ms0830 From Homo Sapiens
Length = 151
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 43 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL-DRLGADPYR 97
+ RAL G ILV CAVG +S TL + M + + + I K+ D G P R
Sbjct: 77 IHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNR 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,210,652
Number of Sequences: 62578
Number of extensions: 796861
Number of successful extensions: 2803
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 141
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)