Query psy12559
Match_columns 610
No_of_seqs 390 out of 3187
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:25:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465|consensus 100.0 5E-136 1E-140 1059.5 40.6 586 1-589 79-665 (721)
2 COG0480 FusA Translation elong 100.0 9E-126 2E-130 1046.2 54.7 583 1-591 50-635 (697)
3 PRK00007 elongation factor G; 100.0 3E-111 6E-116 955.1 56.8 583 1-590 50-636 (693)
4 PRK12739 elongation factor G; 100.0 2E-110 4E-115 949.1 55.2 582 1-589 48-632 (691)
5 TIGR00484 EF-G translation elo 100.0 3E-109 8E-114 939.4 57.4 581 1-589 50-632 (689)
6 PRK13351 elongation factor G; 100.0 3E-106 6E-111 918.1 58.5 581 1-589 48-631 (687)
7 PRK12740 elongation factor G; 100.0 3E-101 7E-106 875.5 57.2 578 1-589 35-614 (668)
8 PLN00116 translation elongatio 100.0 1.7E-97 4E-102 855.5 41.1 570 1-589 57-759 (843)
9 PTZ00416 elongation factor 2; 100.0 5.2E-97 1E-101 849.6 37.9 566 1-589 57-752 (836)
10 KOG0464|consensus 100.0 3.8E-97 8E-102 735.6 15.8 569 1-586 77-688 (753)
11 TIGR00490 aEF-2 translation el 100.0 3.6E-92 7.8E-97 801.1 38.0 532 1-589 57-655 (720)
12 PRK07560 elongation factor EF- 100.0 3.8E-91 8.3E-96 794.8 35.1 538 1-590 58-658 (731)
13 KOG0469|consensus 100.0 1.3E-84 2.8E-89 658.8 15.2 565 1-587 57-756 (842)
14 PRK00741 prfC peptide chain re 100.0 3.3E-77 7.1E-82 651.3 45.4 404 1-439 54-473 (526)
15 TIGR00503 prfC peptide chain r 100.0 3.8E-73 8.1E-78 619.5 44.4 403 1-437 55-472 (527)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 4.2E-65 9.2E-70 562.8 32.3 327 1-438 39-389 (594)
17 KOG0468|consensus 100.0 8.6E-65 1.9E-69 529.0 26.0 567 1-585 167-856 (971)
18 PRK10218 GTP-binding protein; 100.0 5.6E-64 1.2E-68 552.6 33.1 326 1-436 43-392 (607)
19 PRK05433 GTP-binding protein L 100.0 9.4E-64 2E-68 554.2 33.1 376 1-590 44-437 (600)
20 COG4108 PrfC Peptide chain rel 100.0 3E-63 6.5E-68 500.0 31.4 404 1-434 56-470 (528)
21 TIGR01393 lepA GTP-binding pro 100.0 3.2E-62 6.8E-67 541.6 34.2 376 1-590 40-433 (595)
22 KOG0467|consensus 100.0 4E-59 8.6E-64 495.5 20.0 554 1-585 47-778 (887)
23 COG1217 TypA Predicted membran 100.0 8.3E-56 1.8E-60 448.0 33.3 325 1-435 43-391 (603)
24 COG0481 LepA Membrane GTPase L 100.0 1.1E-55 2.4E-60 448.5 34.2 384 1-519 46-447 (603)
25 KOG0462|consensus 100.0 1.3E-56 2.8E-61 462.5 26.0 321 1-437 97-431 (650)
26 cd01886 EF-G Elongation factor 100.0 1.6E-48 3.5E-53 393.4 28.0 232 1-232 39-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 7.8E-43 1.7E-47 351.8 26.1 221 1-232 46-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 2.3E-41 5.1E-46 343.6 28.5 230 1-232 39-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 2E-40 4.3E-45 329.1 24.2 199 1-232 39-237 (237)
30 PRK12736 elongation factor Tu; 100.0 2.8E-33 6.2E-38 298.6 25.9 230 1-343 50-296 (394)
31 CHL00071 tufA elongation facto 100.0 9.9E-33 2.1E-37 295.8 26.0 228 1-340 50-304 (409)
32 PTZ00141 elongation factor 1- 100.0 9.8E-33 2.1E-37 297.4 24.0 225 1-340 60-315 (446)
33 PLN00043 elongation factor 1-a 100.0 2E-32 4.3E-37 294.8 22.8 225 1-340 60-315 (447)
34 TIGR00485 EF-Tu translation el 100.0 6.2E-32 1.4E-36 288.7 26.2 228 1-340 50-294 (394)
35 PRK05306 infB translation init 100.0 2E-31 4.3E-36 300.5 29.7 272 8-392 319-621 (787)
36 PRK00049 elongation factor Tu; 100.0 1.9E-31 4.2E-36 284.4 25.4 228 1-340 50-296 (396)
37 PRK12735 elongation factor Tu; 100.0 3E-31 6.5E-36 283.2 25.6 230 1-343 50-298 (396)
38 PLN03126 Elongation factor Tu; 100.0 4.6E-31 9.9E-36 285.1 26.1 224 1-340 119-373 (478)
39 PLN03127 Elongation factor Tu; 100.0 1.1E-30 2.5E-35 280.8 27.0 228 1-340 99-347 (447)
40 COG5256 TEF1 Translation elong 100.0 1.2E-30 2.5E-35 265.1 24.1 230 1-349 60-321 (428)
41 TIGR02034 CysN sulfate adenyly 100.0 4.5E-30 9.8E-35 274.8 24.3 229 1-344 55-300 (406)
42 PRK12317 elongation factor 1-a 100.0 1.2E-29 2.6E-34 274.2 25.0 228 1-344 59-310 (425)
43 TIGR00487 IF-2 translation ini 100.0 4.3E-29 9.4E-34 275.8 29.8 271 9-392 117-419 (587)
44 PTZ00327 eukaryotic translatio 100.0 1.6E-29 3.4E-34 271.3 23.3 224 1-340 59-348 (460)
45 PRK05124 cysN sulfate adenylyl 100.0 3.4E-29 7.3E-34 272.0 24.9 229 1-343 82-327 (474)
46 COG0050 TufB GTPases - transla 100.0 1.8E-29 4E-34 243.3 19.2 227 2-340 51-294 (394)
47 KOG0460|consensus 100.0 8.2E-30 1.8E-34 250.1 16.6 229 2-344 93-341 (449)
48 TIGR00483 EF-1_alpha translati 100.0 1.5E-28 3.2E-33 265.7 24.6 225 1-340 60-309 (426)
49 PRK10512 selenocysteinyl-tRNA- 100.0 2.4E-28 5.2E-33 272.0 23.7 223 1-340 25-257 (614)
50 PRK04000 translation initiatio 100.0 3.1E-27 6.7E-32 252.9 25.5 227 1-344 34-318 (411)
51 CHL00189 infB translation init 100.0 5.3E-27 1.1E-31 262.3 26.1 271 7-390 272-574 (742)
52 TIGR03680 eif2g_arch translati 100.0 8.8E-27 1.9E-31 249.6 25.3 226 1-343 29-312 (406)
53 COG3276 SelB Selenocysteine-sp 99.9 7.3E-27 1.6E-31 239.2 20.2 222 1-340 25-253 (447)
54 PRK05506 bifunctional sulfate 99.9 1.6E-26 3.5E-31 261.0 23.8 229 1-344 79-324 (632)
55 TIGR00475 selB selenocysteine- 99.9 3.7E-26 8E-31 253.9 23.4 226 1-340 25-258 (581)
56 COG2895 CysN GTPases - Sulfate 99.9 1.5E-26 3.3E-31 228.8 17.1 284 1-400 61-361 (431)
57 PF00009 GTP_EFTU: Elongation 99.9 1.2E-26 2.7E-31 223.1 13.1 102 2-103 44-147 (188)
58 KOG0458|consensus 99.9 3.3E-25 7.1E-30 232.9 19.6 226 1-340 230-487 (603)
59 cd01885 EF2 EF2 (for archaea a 99.9 8.2E-25 1.8E-29 214.3 18.1 106 1-106 38-157 (222)
60 PF03764 EFG_IV: Elongation fa 99.9 7.5E-26 1.6E-30 201.1 8.7 118 429-549 1-119 (120)
61 cd01684 Tet_like_IV EF-G_domai 99.9 1.3E-25 2.8E-30 197.1 9.6 113 431-548 1-113 (115)
62 cd01884 EF_Tu EF-Tu subfamily. 99.9 5E-24 1.1E-28 205.3 15.7 91 1-91 40-131 (195)
63 COG0532 InfB Translation initi 99.9 1.6E-22 3.6E-27 212.7 24.2 268 10-390 36-338 (509)
64 COG5257 GCD11 Translation init 99.9 1.6E-22 3.4E-27 198.0 22.1 276 1-406 35-362 (415)
65 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 3.9E-24 8.5E-29 188.6 8.2 115 433-549 1-115 (116)
66 KOG1145|consensus 99.9 4.1E-22 8.9E-27 207.1 23.9 268 11-391 185-504 (683)
67 cd01693 mtEFG2_like_IV mtEF-G2 99.9 3.9E-23 8.5E-28 183.5 7.8 116 431-548 1-118 (120)
68 cd01680 EFG_like_IV Elongation 99.9 4.9E-23 1.1E-27 181.9 8.3 114 433-548 1-114 (116)
69 PRK04004 translation initiatio 99.9 2.4E-21 5.1E-26 215.0 22.2 235 28-340 73-326 (586)
70 COG5258 GTPBP1 GTPase [General 99.9 1.7E-20 3.8E-25 187.4 24.2 244 1-340 153-434 (527)
71 PRK14845 translation initiatio 99.9 1.8E-20 3.9E-25 216.0 27.2 302 6-381 488-832 (1049)
72 TIGR00491 aIF-2 translation in 99.9 2E-19 4.4E-24 198.7 28.7 253 9-340 34-324 (590)
73 PF14492 EFG_II: Elongation Fa 99.9 1.2E-21 2.7E-26 157.7 7.9 75 354-428 1-75 (75)
74 KOG0461|consensus 99.9 8.1E-21 1.8E-25 187.0 14.5 217 2-329 37-268 (522)
75 KOG0459|consensus 99.8 2.3E-20 5E-25 187.8 15.6 238 1-346 132-392 (501)
76 cd01883 EF1_alpha Eukaryotic e 99.8 8.6E-21 1.9E-25 186.9 11.8 92 1-92 52-151 (219)
77 cd04166 CysN_ATPS CysN_ATPS su 99.8 9.2E-20 2E-24 178.2 13.2 93 1-93 52-145 (208)
78 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.2E-19 2.5E-24 178.7 12.9 107 1-107 35-168 (224)
79 cd01888 eIF2_gamma eIF2-gamma 99.8 1.4E-19 3E-24 176.2 11.7 92 1-92 25-151 (203)
80 cd01890 LepA LepA subfamily. 99.8 2.3E-18 4.9E-23 163.9 17.0 102 1-102 37-143 (179)
81 cd04167 Snu114p Snu114p subfam 99.8 2.4E-18 5.2E-23 168.8 17.1 91 1-91 41-136 (213)
82 cd01891 TypA_BipA TypA (tyrosi 99.8 1.8E-18 4E-23 167.1 16.1 105 1-105 40-144 (194)
83 cd01889 SelB_euk SelB subfamil 99.8 3.3E-18 7.2E-23 165.1 14.7 92 1-92 29-134 (192)
84 cd01683 EF2_IV_snRNP EF-2_doma 99.7 1.3E-18 2.8E-23 163.9 6.2 128 428-561 1-177 (178)
85 cd03690 Tet_II Tet_II: This su 99.7 8.9E-18 1.9E-22 139.1 10.1 82 258-340 1-84 (85)
86 cd04092 mtEFG2_II_like mtEFG2_ 99.7 3.2E-17 6.9E-22 135.5 10.0 80 261-340 1-82 (83)
87 cd04091 mtEFG1_II_like mtEFG1_ 99.7 8.2E-17 1.8E-21 132.3 10.3 80 261-340 1-80 (81)
88 cd03689 RF3_II RF3_II: this su 99.7 1.1E-16 2.3E-21 132.5 9.7 78 263-340 1-83 (85)
89 cd01681 aeEF2_snRNP_like_IV Th 99.7 3.5E-17 7.5E-22 155.3 7.3 127 428-560 1-176 (177)
90 cd00881 GTP_translation_factor 99.7 9.7E-16 2.1E-20 146.6 17.5 106 2-107 38-144 (189)
91 cd04088 EFG_mtEFG_II EFG_mtEFG 99.7 1.8E-16 3.8E-21 131.2 10.0 80 261-340 1-82 (83)
92 KOG1144|consensus 99.6 2.1E-15 4.7E-20 161.4 14.4 209 10-297 506-737 (1064)
93 cd03691 BipA_TypA_II BipA_TypA 99.6 4.1E-15 9E-20 123.8 10.2 80 261-340 1-85 (86)
94 cd03699 lepA_II lepA_II: This 99.6 4.3E-15 9.4E-20 123.5 9.9 79 261-340 1-85 (86)
95 cd04171 SelB SelB subfamily. 99.6 1.2E-14 2.7E-19 135.6 13.3 91 2-92 26-118 (164)
96 KOG1143|consensus 99.6 1.2E-13 2.6E-18 138.0 17.6 225 25-340 248-488 (591)
97 cd03700 eEF2_snRNP_like_II EF2 99.6 1.6E-14 3.4E-19 122.0 9.4 80 261-340 1-92 (93)
98 PF14492 EFG_II: Elongation Fa 99.6 5E-15 1.1E-19 119.3 5.8 72 539-610 2-73 (75)
99 KOG0466|consensus 99.6 1E-14 2.3E-19 142.0 8.9 212 4-328 66-336 (466)
100 KOG0463|consensus 99.5 8.4E-14 1.8E-18 139.1 14.2 223 26-345 219-457 (641)
101 PRK09554 feoB ferrous iron tra 99.5 1.3E-13 2.8E-18 157.5 12.8 209 10-229 34-263 (772)
102 cd04090 eEF2_II_snRNP Loc2 eEF 99.5 1.6E-13 3.5E-18 116.1 10.1 77 261-337 1-89 (94)
103 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 6.2E-13 1.3E-17 124.8 14.1 87 8-94 29-118 (168)
104 COG1160 Predicted GTPases [Gen 99.4 5.6E-13 1.2E-17 139.0 12.8 83 10-92 210-303 (444)
105 COG1160 Predicted GTPases [Gen 99.4 9.3E-13 2E-17 137.3 13.2 82 10-91 35-125 (444)
106 PRK00093 GTP-binding protein D 99.4 1.7E-12 3.7E-17 141.4 14.6 84 8-91 203-297 (435)
107 TIGR03594 GTPase_EngA ribosome 99.4 1.6E-12 3.4E-17 141.4 13.9 83 9-91 203-296 (429)
108 cd01894 EngA1 EngA1 subfamily. 99.4 4.1E-12 8.8E-17 117.5 14.3 85 9-93 28-120 (157)
109 PRK15494 era GTPase Era; Provi 99.3 2E-11 4.3E-16 128.0 15.2 82 11-92 85-174 (339)
110 cd01879 FeoB Ferrous iron tran 99.3 1.2E-11 2.7E-16 114.5 12.0 82 9-92 26-115 (158)
111 TIGR00436 era GTP-binding prot 99.3 2.7E-11 5.8E-16 123.3 15.3 69 22-91 44-120 (270)
112 cd01895 EngA2 EngA2 subfamily. 99.3 4.8E-11 1E-15 112.0 14.6 86 8-93 32-128 (174)
113 PRK03003 GTP-binding protein D 99.3 2.2E-11 4.8E-16 133.5 13.7 84 9-92 242-336 (472)
114 cd04160 Arfrp1 Arfrp1 subfamil 99.3 2.4E-11 5.2E-16 113.9 11.9 82 11-92 35-121 (167)
115 TIGR03594 GTPase_EngA ribosome 99.3 2.4E-11 5.1E-16 132.2 13.2 84 9-92 30-121 (429)
116 COG1159 Era GTPase [General fu 99.3 5.1E-11 1.1E-15 118.1 13.8 70 23-92 51-128 (298)
117 COG2229 Predicted GTPase [Gene 99.3 7.8E-11 1.7E-15 108.2 13.1 86 9-94 50-137 (187)
118 PRK09518 bifunctional cytidyla 99.3 2.8E-11 6.1E-16 138.9 12.6 84 9-92 481-575 (712)
119 cd04151 Arl1 Arl1 subfamily. 99.3 6.2E-11 1.3E-15 110.3 12.6 77 17-93 34-115 (158)
120 cd04157 Arl6 Arl6 subfamily. 99.3 7.1E-11 1.5E-15 110.0 13.0 76 18-93 37-119 (162)
121 PF02421 FeoB_N: Ferrous iron 99.2 1.6E-11 3.5E-16 112.8 7.0 80 10-91 31-118 (156)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1E-10 2.2E-15 108.7 12.4 81 12-92 29-114 (158)
123 cd04154 Arl2 Arl2 subfamily. 99.2 1.6E-10 3.5E-15 109.3 12.3 75 18-92 50-129 (173)
124 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.1E-11 2.4E-16 122.5 4.1 116 23-141 80-210 (225)
125 PRK03003 GTP-binding protein D 99.2 1.7E-10 3.7E-15 126.6 13.9 85 8-92 68-160 (472)
126 PRK00089 era GTPase Era; Revie 99.1 7.3E-10 1.6E-14 114.2 15.5 68 24-91 51-126 (292)
127 cd00880 Era_like Era (E. coli 99.1 7.7E-10 1.7E-14 101.6 14.0 84 9-92 27-118 (163)
128 PRK09518 bifunctional cytidyla 99.1 3.9E-10 8.5E-15 129.6 14.7 83 9-91 306-396 (712)
129 cd01864 Rab19 Rab19 subfamily. 99.1 3.1E-10 6.7E-15 106.3 11.5 81 12-92 36-122 (165)
130 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 5.1E-10 1.1E-14 106.1 12.9 81 12-92 45-130 (174)
131 PRK00093 GTP-binding protein D 99.1 5.2E-10 1.1E-14 121.9 14.0 82 10-91 33-122 (435)
132 PRK15467 ethanolamine utilizat 99.1 4.6E-10 1E-14 104.7 11.6 71 20-94 33-107 (158)
133 KOG0465|consensus 99.1 5.7E-11 1.2E-15 126.2 5.9 73 538-610 432-504 (721)
134 cd00879 Sar1 Sar1 subfamily. 99.1 4.6E-10 1E-14 107.8 11.7 80 13-92 50-134 (190)
135 cd04124 RabL2 RabL2 subfamily. 99.1 6.3E-10 1.4E-14 104.0 11.3 73 19-91 42-117 (161)
136 cd01898 Obg Obg subfamily. Th 99.1 1.2E-09 2.7E-14 102.5 13.2 82 11-92 32-128 (170)
137 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 7.1E-10 1.5E-14 106.1 11.6 69 23-91 49-122 (183)
138 cd04145 M_R_Ras_like M-Ras/R-R 99.1 9.8E-10 2.1E-14 102.5 12.0 66 26-91 50-120 (164)
139 cd01897 NOG NOG1 is a nucleola 99.1 1.1E-09 2.5E-14 102.6 12.5 82 11-92 32-127 (168)
140 smart00177 ARF ARF-like small 99.1 1.7E-09 3.8E-14 102.6 13.3 75 18-92 49-128 (175)
141 cd04164 trmE TrmE (MnmE, ThdF, 99.1 1E-09 2.2E-14 101.3 11.4 81 10-92 33-121 (157)
142 PRK04213 GTP-binding protein; 99.1 1.3E-09 2.8E-14 105.8 12.3 94 8-106 38-157 (201)
143 cd04114 Rab30 Rab30 subfamily. 99.1 9.4E-10 2E-14 103.3 10.9 76 16-91 44-125 (169)
144 cd04113 Rab4 Rab4 subfamily. 99.1 1.5E-09 3.3E-14 101.1 11.8 68 24-91 47-118 (161)
145 PF03144 GTP_EFTU_D2: Elongati 99.0 2.4E-10 5.1E-15 92.2 5.1 67 274-340 1-74 (74)
146 smart00178 SAR Sar1p-like memb 99.0 1.7E-09 3.7E-14 103.5 11.7 80 13-92 48-132 (184)
147 cd04149 Arf6 Arf6 subfamily. 99.0 2.2E-09 4.8E-14 101.1 12.3 73 20-92 47-124 (168)
148 cd04163 Era Era subfamily. Er 99.0 5.7E-09 1.2E-13 96.9 15.0 71 21-91 46-124 (168)
149 cd04159 Arl10_like Arl10-like 99.0 2.9E-09 6.3E-14 98.1 12.8 75 18-92 36-115 (159)
150 cd04147 Ras_dva Ras-dva subfam 99.0 2.4E-09 5.3E-14 103.7 12.8 74 19-92 38-118 (198)
151 cd01860 Rab5_related Rab5-rela 99.0 2.9E-09 6.3E-14 99.3 12.7 75 17-91 41-119 (163)
152 cd04150 Arf1_5_like Arf1-Arf5- 99.0 3.4E-09 7.3E-14 98.9 13.0 73 20-92 38-115 (159)
153 cd04139 RalA_RalB RalA/RalB su 99.0 1.8E-09 4E-14 100.5 11.2 68 24-91 46-118 (164)
154 TIGR00437 feoB ferrous iron tr 99.0 1.3E-09 2.9E-14 121.9 12.0 81 9-91 24-112 (591)
155 cd04158 ARD1 ARD1 subfamily. 99.0 2.4E-09 5.2E-14 100.9 11.8 80 13-92 30-114 (169)
156 PLN00223 ADP-ribosylation fact 99.0 3.2E-09 6.8E-14 101.4 12.2 75 19-93 54-133 (181)
157 COG0480 FusA Translation elong 99.0 5.5E-10 1.2E-14 125.4 7.9 71 540-610 404-474 (697)
158 cd01881 Obg_like The Obg-like 99.0 4E-09 8.6E-14 99.5 12.7 83 10-92 27-134 (176)
159 smart00175 RAB Rab subfamily o 99.0 4.6E-09 9.9E-14 97.9 12.7 81 11-91 32-118 (164)
160 smart00176 RAN Ran (Ras-relate 99.0 2.9E-09 6.3E-14 103.2 11.6 68 24-91 42-112 (200)
161 PTZ00133 ADP-ribosylation fact 99.0 3.4E-09 7.3E-14 101.3 11.6 75 18-92 53-132 (182)
162 cd04106 Rab23_lke Rab23-like s 99.0 6E-09 1.3E-13 97.0 13.0 67 25-91 50-119 (162)
163 smart00173 RAS Ras subfamily o 99.0 4.6E-09 1E-13 98.1 12.1 67 25-91 47-118 (164)
164 cd01863 Rab18 Rab18 subfamily. 99.0 4.2E-09 9.2E-14 98.0 11.6 68 24-91 47-119 (161)
165 cd04161 Arl2l1_Arl13_like Arl2 99.0 6.1E-09 1.3E-13 98.0 12.7 83 12-94 29-116 (167)
166 TIGR00231 small_GTP small GTP- 99.0 1.3E-09 2.7E-14 100.1 7.6 86 6-92 28-122 (161)
167 PRK05291 trmE tRNA modificatio 99.0 2.9E-09 6.3E-14 115.8 11.4 82 9-92 246-335 (449)
168 cd04155 Arl3 Arl3 subfamily. 99.0 4.1E-09 8.9E-14 99.4 11.0 74 19-92 51-129 (173)
169 cd01865 Rab3 Rab3 subfamily. 99.0 5.4E-09 1.2E-13 98.0 11.7 68 25-92 49-120 (165)
170 PTZ00369 Ras-like protein; Pro 99.0 4.6E-09 1E-13 101.0 11.3 70 22-91 49-123 (189)
171 cd04156 ARLTS1 ARLTS1 subfamil 98.9 6.6E-09 1.4E-13 96.6 11.8 69 24-92 42-115 (160)
172 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 9.9E-09 2.2E-13 96.3 13.0 81 13-93 31-114 (164)
173 TIGR03598 GTPase_YsxC ribosome 98.9 4E-09 8.7E-14 100.4 9.7 67 26-92 64-143 (179)
174 cd01893 Miro1 Miro1 subfamily. 98.9 9.9E-09 2.1E-13 96.3 12.2 69 24-92 45-117 (166)
175 PTZ00099 rab6; Provisional 98.9 8.6E-09 1.9E-13 97.9 11.7 68 24-91 27-98 (176)
176 cd04177 RSR1 RSR1 subgroup. R 98.9 1.1E-08 2.4E-13 96.2 12.2 66 26-91 49-119 (168)
177 PRK09866 hypothetical protein; 98.9 1.3E-08 2.8E-13 110.8 13.9 67 25-91 229-302 (741)
178 cd01862 Rab7 Rab7 subfamily. 98.9 1.2E-08 2.6E-13 96.0 12.2 72 20-91 41-122 (172)
179 cd01866 Rab2 Rab2 subfamily. 98.9 1.4E-08 2.9E-13 95.6 12.5 68 24-91 51-122 (168)
180 cd04140 ARHI_like ARHI subfami 98.9 9.2E-09 2E-13 96.4 10.7 72 20-91 43-121 (165)
181 cd01861 Rab6 Rab6 subfamily. 98.9 2.9E-08 6.3E-13 92.2 14.0 83 9-91 30-118 (161)
182 cd04138 H_N_K_Ras_like H-Ras/N 98.9 1.2E-08 2.6E-13 94.6 11.3 66 26-91 49-119 (162)
183 TIGR00450 mnmE_trmE_thdF tRNA 98.9 1.4E-08 3.1E-13 109.8 13.0 83 10-93 235-325 (442)
184 cd00877 Ran Ran (Ras-related n 98.9 1.1E-08 2.4E-13 96.1 10.6 68 24-91 47-117 (166)
185 cd04119 RJL RJL (RabJ-Like) su 98.9 1.9E-08 4.2E-13 93.8 12.2 68 24-91 47-123 (168)
186 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 2.2E-08 4.7E-13 93.8 12.5 67 25-91 50-120 (166)
187 TIGR02729 Obg_CgtA Obg family 98.9 2.2E-08 4.9E-13 104.3 13.7 82 11-92 189-287 (329)
188 cd04112 Rab26 Rab26 subfamily. 98.9 1.5E-08 3.2E-13 97.6 11.4 67 25-91 49-119 (191)
189 PRK12298 obgE GTPase CgtA; Rev 98.9 2.2E-08 4.8E-13 106.5 13.7 81 11-91 191-288 (390)
190 cd01878 HflX HflX subfamily. 98.9 2.6E-08 5.7E-13 96.8 13.1 82 11-92 73-167 (204)
191 cd00154 Rab Rab family. Rab G 98.9 2.3E-08 5E-13 92.0 11.7 76 16-91 37-118 (159)
192 cd04146 RERG_RasL11_like RERG/ 98.9 1.7E-08 3.8E-13 94.4 11.0 70 22-91 43-119 (165)
193 cd04175 Rap1 Rap1 subgroup. T 98.9 3.3E-08 7.1E-13 92.4 12.8 72 20-91 41-119 (164)
194 cd01867 Rab8_Rab10_Rab13_like 98.9 2.7E-08 5.8E-13 93.4 12.2 72 20-91 44-121 (167)
195 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 3.1E-08 6.7E-13 96.2 12.7 67 25-91 49-123 (201)
196 TIGR02528 EutP ethanolamine ut 98.8 1.1E-08 2.4E-13 93.2 8.8 66 20-91 32-101 (142)
197 cd04123 Rab21 Rab21 subfamily. 98.8 3.2E-08 7E-13 91.8 12.1 67 25-91 48-118 (162)
198 cd04122 Rab14 Rab14 subfamily. 98.8 4.2E-08 9E-13 92.0 12.3 67 25-91 50-120 (166)
199 PLN03118 Rab family protein; P 98.8 2.1E-08 4.7E-13 98.1 10.6 73 19-91 53-133 (211)
200 cd04142 RRP22 RRP22 subfamily. 98.8 6.4E-08 1.4E-12 93.8 13.6 72 20-91 41-129 (198)
201 cd01868 Rab11_like Rab11-like. 98.8 5E-08 1.1E-12 91.2 12.6 80 12-91 36-121 (165)
202 cd04120 Rab12 Rab12 subfamily. 98.8 2.5E-08 5.5E-13 96.8 10.8 73 19-91 40-118 (202)
203 cd04136 Rap_like Rap-like subf 98.8 4.6E-08 9.9E-13 91.1 12.2 67 25-91 48-119 (163)
204 cd03693 EF1_alpha_II EF1_alpha 98.8 4.4E-08 9.5E-13 82.2 10.4 79 258-340 2-86 (91)
205 cd04110 Rab35 Rab35 subfamily. 98.8 5.3E-08 1.2E-12 94.4 12.5 73 19-91 46-123 (199)
206 PRK12299 obgE GTPase CgtA; Rev 98.8 5.9E-08 1.3E-12 101.2 13.7 82 11-92 190-285 (335)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 1.8E-08 3.9E-13 95.4 8.8 71 21-91 43-120 (172)
208 PRK00454 engB GTP-binding prot 98.8 5.5E-08 1.2E-12 93.8 12.3 68 25-92 69-149 (196)
209 cd00876 Ras Ras family. The R 98.8 5.2E-08 1.1E-12 90.1 11.4 73 20-92 39-118 (160)
210 cd04115 Rab33B_Rab33A Rab33B/R 98.8 3.1E-08 6.8E-13 93.3 10.0 77 16-92 39-123 (170)
211 cd04116 Rab9 Rab9 subfamily. 98.8 4.7E-08 1E-12 91.9 11.0 72 20-91 46-127 (170)
212 cd00882 Ras_like_GTPase Ras-li 98.8 5.1E-08 1.1E-12 88.2 10.8 69 25-93 44-117 (157)
213 TIGR03156 GTP_HflX GTP-binding 98.8 5.8E-08 1.3E-12 102.1 12.6 81 11-91 221-314 (351)
214 cd04101 RabL4 RabL4 (Rab-like4 98.8 3.6E-08 7.9E-13 92.0 9.9 68 24-91 50-120 (164)
215 cd01342 Translation_Factor_II_ 98.8 5E-08 1.1E-12 79.3 9.5 75 262-340 2-82 (83)
216 PRK12739 elongation factor G; 98.8 1.4E-08 3E-13 116.5 8.3 72 539-610 402-473 (691)
217 PRK00007 elongation factor G; 98.8 1.4E-08 3.1E-13 116.4 8.1 72 539-610 405-476 (693)
218 TIGR00490 aEF-2 translation el 98.8 9.5E-09 2.1E-13 118.2 6.6 73 538-610 386-458 (720)
219 TIGR00484 EF-G translation elo 98.8 1.5E-08 3.2E-13 116.3 8.2 72 539-610 403-474 (689)
220 cd04143 Rhes_like Rhes_like su 98.8 8.9E-08 1.9E-12 95.9 12.8 67 25-91 47-126 (247)
221 cd04126 Rab20 Rab20 subfamily. 98.8 1.2E-07 2.7E-12 93.1 13.5 80 13-92 31-114 (220)
222 cd04127 Rab27A Rab27a subfamil 98.7 9.8E-08 2.1E-12 90.6 12.5 67 25-91 62-133 (180)
223 cd03698 eRF3_II_like eRF3_II_l 98.7 6.6E-08 1.4E-12 79.7 9.8 77 260-340 1-82 (83)
224 cd04144 Ras2 Ras2 subfamily. 98.7 9.2E-08 2E-12 92.0 12.4 66 26-91 47-119 (190)
225 cd04137 RheB Rheb (Ras Homolog 98.7 8.2E-08 1.8E-12 91.2 11.8 67 25-91 48-119 (180)
226 PRK12297 obgE GTPase CgtA; Rev 98.7 1.1E-07 2.4E-12 101.8 13.9 81 11-91 190-287 (424)
227 PRK12296 obgE GTPase CgtA; Rev 98.7 1.2E-07 2.6E-12 102.9 14.2 82 10-91 190-297 (500)
228 cd04176 Rap2 Rap2 subgroup. T 98.7 5.9E-08 1.3E-12 90.5 10.4 66 26-91 49-119 (163)
229 PLN03071 GTP-binding nuclear p 98.7 7.1E-08 1.5E-12 95.0 11.2 68 24-91 60-130 (219)
230 PRK13351 elongation factor G; 98.7 1.8E-08 4E-13 115.7 8.1 73 538-610 400-472 (687)
231 cd04108 Rab36_Rab34 Rab34/Rab3 98.7 9.2E-08 2E-12 90.3 11.5 67 25-91 48-119 (170)
232 PRK07560 elongation factor EF- 98.7 1.6E-08 3.5E-13 116.6 7.3 72 539-610 387-458 (731)
233 cd04135 Tc10 TC10 subfamily. 98.7 8.5E-08 1.8E-12 90.5 11.0 68 25-92 47-118 (174)
234 TIGR00503 prfC peptide chain r 98.7 2.1E-08 4.5E-13 110.7 7.8 71 539-610 391-461 (527)
235 PRK13768 GTPase; Provisional 98.7 1.7E-07 3.6E-12 94.3 13.4 68 26-93 97-177 (253)
236 cd01874 Cdc42 Cdc42 subfamily. 98.7 3.1E-07 6.7E-12 87.1 14.2 73 20-92 41-119 (175)
237 PLN00116 translation elongatio 98.7 2.6E-08 5.6E-13 116.4 7.5 70 540-610 486-557 (843)
238 PRK11058 GTPase HflX; Provisio 98.7 1.5E-07 3.2E-12 101.4 12.3 81 11-91 229-322 (426)
239 cd04125 RabA_like RabA-like su 98.7 1.9E-07 4E-12 89.6 11.7 68 24-91 47-118 (188)
240 PLN03110 Rab GTPase; Provision 98.7 9E-08 2E-12 94.1 9.7 73 19-91 52-130 (216)
241 PRK00741 prfC peptide chain re 98.7 4E-08 8.7E-13 108.5 7.9 71 539-610 390-460 (526)
242 cd04121 Rab40 Rab40 subfamily. 98.7 2.1E-07 4.6E-12 89.4 11.9 67 25-91 54-123 (189)
243 cd00157 Rho Rho (Ras homology) 98.6 1.4E-07 3.1E-12 88.4 10.0 70 24-93 46-119 (171)
244 PF00025 Arf: ADP-ribosylation 98.6 1.2E-07 2.6E-12 89.9 9.0 81 13-93 45-130 (175)
245 cd04118 Rab24 Rab24 subfamily. 98.6 3.2E-07 6.9E-12 88.3 11.9 66 26-91 50-118 (193)
246 cd04109 Rab28 Rab28 subfamily. 98.6 2.4E-07 5.2E-12 91.0 10.9 67 25-91 49-122 (215)
247 PRK12740 elongation factor G; 98.6 6.7E-08 1.4E-12 110.9 7.9 72 539-610 384-455 (668)
248 KOG0052|consensus 98.6 1.7E-08 3.7E-13 103.5 2.7 92 1-92 57-156 (391)
249 PLN03108 Rab family protein; P 98.6 4.4E-07 9.6E-12 88.8 12.5 67 25-91 54-124 (210)
250 KOG1423|consensus 98.6 3.1E-07 6.8E-12 90.9 11.2 81 12-92 106-199 (379)
251 cd01876 YihA_EngB The YihA (En 98.6 6.8E-07 1.5E-11 83.1 13.3 65 27-91 46-123 (170)
252 cd04132 Rho4_like Rho4-like su 98.6 2.9E-07 6.3E-12 88.0 11.0 67 25-91 48-118 (187)
253 COG0218 Predicted GTPase [Gene 98.6 6.9E-07 1.5E-11 84.3 12.8 94 11-107 58-165 (200)
254 cd04128 Spg1 Spg1p. Spg1p (se 98.6 3.8E-07 8.2E-12 87.1 11.3 66 25-91 48-117 (182)
255 cd01871 Rac1_like Rac1-like su 98.6 4E-07 8.7E-12 86.3 11.3 68 25-92 48-119 (174)
256 cd04130 Wrch_1 Wrch-1 subfamil 98.6 3.3E-07 7.2E-12 86.6 10.4 67 25-91 47-117 (173)
257 cd04089 eRF3_II eRF3_II: domai 98.6 4.4E-07 9.4E-12 74.6 9.5 76 260-340 1-81 (82)
258 KOG0464|consensus 98.6 8.9E-08 1.9E-12 97.5 6.4 70 539-608 454-523 (753)
259 smart00174 RHO Rho (Ras homolo 98.6 4.6E-07 9.9E-12 85.4 11.1 66 26-91 46-115 (174)
260 PTZ00416 elongation factor 2; 98.6 9.8E-08 2.1E-12 111.3 7.3 70 540-610 480-550 (836)
261 cd04134 Rho3 Rho3 subfamily. 98.5 4E-07 8.7E-12 87.5 10.3 69 25-93 47-119 (189)
262 cd04105 SR_beta Signal recogni 98.5 3.7E-07 8E-12 88.8 10.0 81 24-104 46-136 (203)
263 COG0486 ThdF Predicted GTPase 98.5 4.1E-07 8.8E-12 95.8 10.8 83 10-93 249-339 (454)
264 cd01859 MJ1464 MJ1464. This f 98.5 5.2E-07 1.1E-11 83.8 9.8 50 42-91 5-54 (156)
265 cd04111 Rab39 Rab39 subfamily. 98.5 9.7E-07 2.1E-11 86.4 12.0 66 26-91 52-122 (211)
266 PF10662 PduV-EutP: Ethanolami 98.5 3.7E-07 7.9E-12 82.3 8.0 60 29-91 39-102 (143)
267 cd01870 RhoA_like RhoA-like su 98.5 7.9E-07 1.7E-11 83.9 10.2 68 25-92 48-119 (175)
268 cd04148 RGK RGK subfamily. Th 98.5 6.6E-07 1.4E-11 88.3 10.0 67 23-91 47-119 (221)
269 cd04133 Rop_like Rop subfamily 98.5 9.4E-07 2E-11 83.9 10.6 67 25-91 48-118 (176)
270 cd01892 Miro2 Miro2 subfamily. 98.5 9E-07 1.9E-11 83.4 10.3 71 21-91 47-121 (169)
271 cd01875 RhoG RhoG subfamily. 98.5 1.2E-06 2.6E-11 84.4 11.2 68 25-92 50-121 (191)
272 cd04117 Rab15 Rab15 subfamily. 98.4 2.6E-06 5.6E-11 79.5 12.5 72 20-91 41-118 (161)
273 cd01896 DRG The developmentall 98.4 2.6E-06 5.6E-11 84.7 12.8 95 12-108 33-150 (233)
274 cd01858 NGP_1 NGP-1. Autoanti 98.4 2.1E-06 4.6E-11 79.9 10.2 50 42-91 1-52 (157)
275 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 3.3E-06 7.2E-11 83.6 12.0 67 25-91 60-130 (232)
276 COG0370 FeoB Fe2+ transport sy 98.4 1.9E-06 4.2E-11 94.6 11.2 79 11-91 35-121 (653)
277 cd03696 selB_II selB_II: this 98.4 2.6E-06 5.7E-11 70.1 9.2 75 262-340 2-82 (83)
278 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 4.3E-06 9.3E-11 80.8 12.1 83 9-92 32-130 (196)
279 PF01926 MMR_HSR1: 50S ribosom 98.4 1.8E-06 4E-11 75.8 8.7 77 10-87 31-116 (116)
280 cd03694 GTPBP_II Domain II of 98.3 3.6E-06 7.9E-11 69.9 9.4 75 262-340 2-86 (87)
281 PTZ00132 GTP-binding nuclear p 98.3 5E-06 1.1E-10 81.5 12.1 68 24-91 56-126 (215)
282 cd04131 Rnd Rnd subfamily. Th 98.3 4.1E-06 8.9E-11 79.7 10.8 67 25-91 48-118 (178)
283 cd03695 CysN_NodQ_II CysN_NodQ 98.3 4.7E-06 1E-10 68.2 9.5 75 262-340 2-80 (81)
284 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 6.3E-06 1.4E-10 78.7 11.6 67 25-91 52-122 (182)
285 cd03697 EFTU_II EFTU_II: Elong 98.3 3.6E-06 7.8E-11 70.0 8.5 75 262-340 2-84 (87)
286 KOG0070|consensus 98.3 8.2E-06 1.8E-10 75.6 10.7 81 13-93 48-133 (181)
287 PRK05433 GTP-binding protein L 98.2 1.4E-06 3E-11 98.0 6.7 70 539-610 294-368 (600)
288 cd01873 RhoBTB RhoBTB subfamil 98.2 8E-06 1.7E-10 78.9 11.1 66 25-92 65-134 (195)
289 PRK09435 membrane ATPase/prote 98.2 5.1E-06 1.1E-10 86.1 9.0 61 24-93 147-209 (332)
290 KOG0075|consensus 98.2 3.3E-05 7.2E-10 68.4 11.8 71 23-93 62-137 (186)
291 TIGR01393 lepA GTP-binding pro 98.2 3.3E-06 7.1E-11 94.9 7.1 70 539-610 290-364 (595)
292 KOG0094|consensus 98.1 2.9E-05 6.3E-10 72.3 11.7 69 24-92 69-142 (221)
293 cd04103 Centaurin_gamma Centau 98.1 3.3E-05 7.2E-10 71.9 12.4 67 20-91 39-112 (158)
294 KOG0078|consensus 98.1 3.3E-05 7.1E-10 73.2 11.8 74 19-92 54-131 (207)
295 cd04129 Rho2 Rho2 subfamily. 98.1 2E-05 4.3E-10 75.5 10.1 66 26-91 49-118 (187)
296 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.1 3.6E-05 7.8E-10 75.8 11.9 68 25-92 48-119 (222)
297 KOG0072|consensus 98.1 1.6E-05 3.4E-10 70.2 8.1 80 13-92 49-133 (182)
298 KOG0084|consensus 98.1 2.2E-05 4.8E-10 73.3 9.6 90 2-91 32-127 (205)
299 TIGR01394 TypA_BipA GTP-bindin 98.1 7.6E-06 1.6E-10 91.8 7.8 71 539-610 299-378 (594)
300 cd01856 YlqF YlqF. Proteins o 98.1 2E-05 4.3E-10 74.4 9.4 56 34-91 3-59 (171)
301 TIGR03596 GTPase_YlqF ribosome 98.0 2.1E-05 4.5E-10 80.3 9.7 56 34-91 5-61 (276)
302 KOG0469|consensus 98.0 8.7E-06 1.9E-10 85.2 6.8 70 538-608 484-554 (842)
303 cd04104 p47_IIGP_like p47 (47- 98.0 3.8E-05 8.3E-10 74.3 10.9 64 26-91 52-120 (197)
304 cd01849 YlqF_related_GTPase Yl 98.0 2.7E-05 5.9E-10 72.2 9.5 41 51-91 1-42 (155)
305 PF00071 Ras: Ras family; Int 98.0 4.2E-05 9E-10 71.0 10.7 68 24-91 46-117 (162)
306 COG2262 HflX GTPases [General 98.0 4.9E-05 1.1E-09 79.0 11.8 79 13-91 226-317 (411)
307 PF09439 SRPRB: Signal recogni 98.0 1.3E-05 2.9E-10 75.6 7.0 72 24-96 47-130 (181)
308 cd01855 YqeH YqeH. YqeH is an 98.0 1.4E-05 3.1E-10 76.8 7.4 56 34-91 19-74 (190)
309 KOG0092|consensus 98.0 1.6E-05 3.4E-10 74.0 7.1 80 13-92 37-124 (200)
310 PRK10218 GTP-binding protein; 98.0 1.2E-05 2.6E-10 90.1 7.4 71 539-610 303-382 (607)
311 KOG0098|consensus 98.0 2.5E-05 5.4E-10 72.2 7.5 70 22-91 51-124 (216)
312 cd03692 mtIF2_IVc mtIF2_IVc: t 97.9 8.6E-05 1.9E-09 61.2 9.7 72 264-339 4-82 (84)
313 COG3596 Predicted GTPase [Gene 97.9 0.00013 2.9E-09 72.0 12.3 69 23-91 84-161 (296)
314 COG1084 Predicted GTPase [Gene 97.9 6.8E-05 1.5E-09 75.7 9.8 73 19-92 208-294 (346)
315 cd01850 CDC_Septin CDC/Septin. 97.9 4.1E-05 9E-10 78.0 8.4 99 8-107 43-173 (276)
316 KOG0073|consensus 97.9 0.0003 6.6E-09 63.8 12.5 79 14-92 48-131 (185)
317 smart00053 DYNc Dynamin, GTPas 97.8 6E-05 1.3E-09 74.8 8.7 69 26-94 125-208 (240)
318 PRK09563 rbgA GTPase YlqF; Rev 97.8 5.4E-05 1.2E-09 77.7 8.7 57 33-91 7-64 (287)
319 KOG1489|consensus 97.8 0.00017 3.7E-09 72.3 11.4 75 13-91 230-325 (366)
320 cd04102 RabL3 RabL3 (Rab-like3 97.8 0.00018 3.8E-09 69.8 10.8 68 25-92 53-143 (202)
321 KOG0090|consensus 97.8 0.00057 1.2E-08 64.9 13.5 88 12-99 68-166 (238)
322 KOG0093|consensus 97.7 0.00028 6E-09 62.7 10.0 69 24-92 68-140 (193)
323 KOG1532|consensus 97.7 0.0001 2.3E-09 72.2 8.0 71 25-95 115-198 (366)
324 KOG0088|consensus 97.7 2.9E-05 6.3E-10 69.5 3.4 68 24-91 60-131 (218)
325 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 0.00017 3.7E-09 65.7 8.6 51 41-91 3-55 (141)
326 cd01899 Ygr210 Ygr210 subfamil 97.7 0.00028 6.1E-09 73.1 10.9 38 24-61 67-111 (318)
327 PLN00023 GTP-binding protein; 97.7 0.00026 5.6E-09 72.8 10.1 68 25-92 82-165 (334)
328 PF03029 ATP_bind_1: Conserved 97.6 0.00031 6.7E-09 69.9 10.4 67 27-93 92-171 (238)
329 KOG0076|consensus 97.6 0.00021 4.5E-09 65.4 8.1 81 13-93 56-141 (197)
330 KOG0080|consensus 97.6 9.7E-05 2.1E-09 66.5 5.4 81 11-91 45-130 (209)
331 KOG1191|consensus 97.6 0.00022 4.7E-09 75.5 8.8 79 10-88 300-387 (531)
332 cd03110 Fer4_NifH_child This p 97.6 0.00031 6.7E-09 66.7 9.3 69 23-93 90-158 (179)
333 COG1163 DRG Predicted GTPase [ 97.6 0.00031 6.7E-09 70.8 9.1 73 17-90 101-185 (365)
334 KOG0087|consensus 97.6 0.0003 6.5E-09 66.6 8.4 76 17-92 54-133 (222)
335 PF08477 Miro: Miro-like prote 97.6 6.1E-05 1.3E-09 66.1 3.5 80 10-89 34-119 (119)
336 TIGR02836 spore_IV_A stage IV 97.5 0.00095 2.1E-08 70.0 12.3 88 26-113 91-215 (492)
337 TIGR00750 lao LAO/AO transport 97.5 0.00049 1.1E-08 71.1 10.2 63 24-93 125-187 (300)
338 PRK12289 GTPase RsgA; Reviewed 97.5 0.00051 1.1E-08 72.2 9.4 47 45-91 85-133 (352)
339 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00054 1.2E-08 70.3 8.4 45 47-91 76-122 (287)
340 PRK00098 GTPase RsgA; Reviewed 97.3 0.00065 1.4E-08 70.1 8.3 46 46-91 77-124 (298)
341 KOG0071|consensus 97.3 0.0024 5.1E-08 56.5 10.3 79 15-93 50-133 (180)
342 cd03688 eIF2_gamma_II eIF2_gam 97.3 0.0015 3.3E-08 55.8 8.9 71 257-331 2-94 (113)
343 TIGR00157 ribosome small subun 97.3 0.00061 1.3E-08 68.2 7.3 53 39-91 26-80 (245)
344 KOG0086|consensus 97.3 0.0018 3.9E-08 57.9 9.0 81 12-92 44-128 (214)
345 PF04670 Gtr1_RagA: Gtr1/RagA 97.3 0.00091 2E-08 66.0 8.0 96 11-106 32-140 (232)
346 smart00275 G_alpha G protein a 97.2 0.0045 9.7E-08 65.1 13.5 84 8-91 166-264 (342)
347 cd02036 MinD Bacterial cell di 97.2 0.0022 4.7E-08 60.5 10.2 83 27-111 64-147 (179)
348 KOG0083|consensus 97.2 0.00082 1.8E-08 58.5 6.4 76 16-91 37-116 (192)
349 cd01853 Toc34_like Toc34-like 97.2 0.0022 4.8E-08 64.3 10.6 82 11-109 64-147 (249)
350 cd03702 IF2_mtIF2_II This fami 97.2 0.0033 7.1E-08 52.9 9.5 74 262-340 2-78 (95)
351 PRK01889 GTPase RsgA; Reviewed 97.1 0.0025 5.5E-08 67.4 10.2 45 48-92 111-156 (356)
352 PRK09602 translation-associate 97.1 0.0043 9.2E-08 66.5 12.0 36 26-61 72-114 (396)
353 KOG0095|consensus 97.0 0.0035 7.5E-08 55.8 8.5 67 25-91 55-125 (213)
354 TIGR03597 GTPase_YqeH ribosome 97.0 0.0031 6.7E-08 66.9 9.9 54 37-92 51-104 (360)
355 cd00066 G-alpha G protein alph 97.0 0.0014 3E-08 68.2 6.8 83 9-91 144-241 (317)
356 TIGR00073 hypB hydrogenase acc 97.0 0.0029 6.3E-08 61.7 8.5 61 25-92 102-162 (207)
357 COG4917 EutP Ethanolamine util 97.0 0.0031 6.8E-08 54.8 7.5 59 30-91 41-103 (148)
358 COG0536 Obg Predicted GTPase [ 96.9 0.0073 1.6E-07 61.6 11.1 64 24-91 205-288 (369)
359 TIGR00101 ureG urease accessor 96.9 0.0034 7.3E-08 60.8 8.5 57 25-92 91-151 (199)
360 PF00350 Dynamin_N: Dynamin fa 96.9 0.0013 2.7E-08 61.6 5.0 64 25-88 100-168 (168)
361 KOG0395|consensus 96.8 0.012 2.6E-07 56.7 11.4 68 25-92 50-122 (196)
362 KOG0394|consensus 96.8 0.0051 1.1E-07 57.1 8.1 68 25-92 57-132 (210)
363 PF14578 GTP_EFTU_D4: Elongati 96.8 0.015 3.3E-07 47.0 9.7 72 261-340 5-80 (81)
364 PRK13796 GTPase YqeH; Provisio 96.7 0.0087 1.9E-07 63.6 10.4 48 42-91 61-109 (365)
365 COG1100 GTPase SAR1 and relate 96.7 0.0036 7.8E-08 61.2 7.0 70 25-94 53-127 (219)
366 cd03701 IF2_IF5B_II IF2_IF5B_I 96.6 0.015 3.3E-07 49.0 8.9 74 262-340 2-78 (95)
367 cd03703 aeIF5B_II aeIF5B_II: T 96.6 0.018 3.9E-07 49.4 9.2 78 263-340 3-93 (110)
368 PRK12288 GTPase RsgA; Reviewed 96.6 0.013 2.8E-07 61.7 10.1 45 48-92 119-164 (347)
369 KOG0079|consensus 96.5 0.008 1.7E-07 53.6 6.9 68 25-92 56-126 (198)
370 KOG0074|consensus 96.4 0.011 2.3E-07 52.4 6.7 76 17-92 52-133 (185)
371 KOG0081|consensus 96.3 0.023 5E-07 51.3 8.8 67 26-92 67-138 (219)
372 cd03115 SRP The signal recogni 96.3 0.014 3E-07 54.9 7.6 67 24-92 81-153 (173)
373 cd04178 Nucleostemin_like Nucl 96.2 0.011 2.5E-07 55.7 6.5 41 51-91 1-43 (172)
374 PF03308 ArgK: ArgK protein; 96.2 0.021 4.5E-07 56.6 8.3 61 24-93 120-182 (266)
375 TIGR01007 eps_fam capsular exo 96.0 0.02 4.3E-07 55.6 7.4 68 24-92 126-194 (204)
376 TIGR00991 3a0901s02IAP34 GTP-b 95.9 0.068 1.5E-06 54.9 11.2 81 18-98 78-176 (313)
377 KOG0097|consensus 95.9 0.026 5.5E-07 49.8 6.8 73 19-91 53-129 (215)
378 PF06858 NOG1: Nucleolar GTP-b 95.9 0.022 4.8E-07 42.7 5.4 48 42-89 5-58 (58)
379 TIGR01969 minD_arch cell divis 95.9 0.12 2.7E-06 51.5 12.9 81 24-108 107-188 (251)
380 KOG0077|consensus 95.9 0.018 3.9E-07 52.6 5.9 89 16-107 54-147 (193)
381 cd02037 MRP-like MRP (Multiple 95.8 0.04 8.6E-07 51.7 8.1 83 24-108 66-159 (169)
382 KOG4252|consensus 95.8 0.012 2.6E-07 54.2 4.3 66 26-91 69-137 (246)
383 COG1703 ArgK Putative periplas 95.8 0.041 8.9E-07 55.4 8.4 71 25-106 143-215 (323)
384 cd02038 FleN-like FleN is a me 95.7 0.03 6.5E-07 50.8 6.9 77 26-105 45-123 (139)
385 KOG2486|consensus 95.7 0.028 6E-07 55.9 6.9 74 18-91 175-261 (320)
386 PRK14722 flhF flagellar biosyn 95.7 0.018 3.9E-07 60.8 6.1 78 23-101 213-303 (374)
387 KOG1954|consensus 95.7 0.025 5.5E-07 58.0 6.7 67 26-92 147-225 (532)
388 COG1162 Predicted GTPases [Gen 95.5 0.085 1.8E-06 53.6 9.8 45 49-93 79-125 (301)
389 KOG1490|consensus 95.3 0.052 1.1E-06 58.0 7.7 68 24-92 213-295 (620)
390 PRK00771 signal recognition pa 95.1 0.39 8.5E-06 52.1 14.0 62 25-91 175-245 (437)
391 cd03111 CpaE_like This protein 95.1 0.063 1.4E-06 46.2 6.5 59 27-87 44-106 (106)
392 PRK10463 hydrogenase nickel in 95.1 0.058 1.3E-06 54.9 7.0 25 203-227 262-286 (290)
393 PRK09601 GTP-binding protein Y 95.0 0.92 2E-05 47.9 15.9 34 27-60 67-107 (364)
394 PF04548 AIG1: AIG1 family; I 94.9 0.25 5.4E-06 48.3 11.0 82 11-93 34-131 (212)
395 PRK13849 putative crown gall t 94.9 0.11 2.3E-06 51.6 8.4 65 23-89 81-151 (231)
396 KOG0393|consensus 94.8 0.11 2.5E-06 49.5 7.8 66 26-91 53-122 (198)
397 PTZ00258 GTP-binding protein; 94.8 0.89 1.9E-05 48.5 15.2 50 11-60 53-126 (390)
398 TIGR03371 cellulose_yhjQ cellu 94.7 0.11 2.4E-06 51.7 7.9 83 25-109 114-199 (246)
399 TIGR01425 SRP54_euk signal rec 94.7 0.088 1.9E-06 56.7 7.5 65 25-91 182-252 (429)
400 TIGR00959 ffh signal recogniti 94.7 0.81 1.8E-05 49.5 14.9 78 24-108 181-267 (428)
401 COG0541 Ffh Signal recognition 94.7 0.36 7.8E-06 51.3 11.8 146 24-201 181-342 (451)
402 KOG0091|consensus 94.6 0.28 6E-06 44.8 9.3 66 26-91 58-129 (213)
403 TIGR01968 minD_bact septum sit 94.5 0.12 2.6E-06 51.8 7.9 82 25-108 111-195 (261)
404 PRK10867 signal recognition pa 94.4 1 2.2E-05 48.8 15.0 78 24-108 182-268 (433)
405 CHL00175 minD septum-site dete 94.3 0.15 3.1E-06 52.2 8.1 83 25-109 126-211 (281)
406 cd03114 ArgK-like The function 94.3 0.082 1.8E-06 48.5 5.6 59 24-89 90-148 (148)
407 TIGR00064 ftsY signal recognit 94.3 0.15 3.2E-06 51.8 7.9 65 24-91 153-230 (272)
408 COG5192 BMS1 GTP-binding prote 94.1 0.25 5.3E-06 53.5 9.1 78 24-106 111-189 (1077)
409 PRK11670 antiporter inner memb 94.0 0.28 6E-06 52.2 9.6 95 22-117 212-315 (369)
410 PHA02518 ParA-like protein; Pr 93.9 0.29 6.4E-06 47.3 8.9 77 24-102 75-157 (211)
411 cd02032 Bchl_like This family 93.7 0.28 6E-06 49.7 8.6 81 24-110 114-199 (267)
412 cd02117 NifH_like This family 93.4 0.27 5.8E-06 47.9 7.6 87 23-112 114-207 (212)
413 PRK10818 cell division inhibit 93.4 0.3 6.4E-06 49.5 8.2 84 24-109 112-206 (270)
414 CHL00189 infB translation init 93.2 0.45 9.7E-06 54.9 10.0 77 263-340 652-731 (742)
415 PF00448 SRP54: SRP54-type pro 93.2 0.26 5.6E-06 47.5 6.9 74 24-100 82-161 (196)
416 KOG0082|consensus 93.2 0.22 4.8E-06 51.9 6.8 83 9-91 178-275 (354)
417 PRK13185 chlL protochlorophyll 93.0 0.34 7.3E-06 49.1 8.0 82 24-111 116-202 (270)
418 TIGR00487 IF-2 translation ini 93.0 0.51 1.1E-05 53.3 9.9 77 263-340 495-575 (587)
419 PRK10416 signal recognition pa 93.0 0.42 9.1E-06 49.7 8.6 73 24-102 195-282 (318)
420 TIGR03815 CpaE_hom_Actino heli 92.7 0.36 7.7E-06 50.4 7.9 80 24-109 203-282 (322)
421 PRK13232 nifH nitrogenase redu 92.7 0.67 1.5E-05 47.1 9.7 86 22-109 113-203 (273)
422 KOG0468|consensus 92.6 0.21 4.6E-06 55.1 5.9 69 539-608 583-652 (971)
423 PF01656 CbiA: CobQ/CobB/MinD/ 92.5 0.21 4.5E-06 47.5 5.4 79 26-106 95-177 (195)
424 PRK05306 infB translation init 92.4 0.88 1.9E-05 53.0 11.1 77 263-340 697-777 (787)
425 cd03112 CobW_like The function 92.4 0.25 5.4E-06 45.8 5.5 63 25-90 86-158 (158)
426 COG1149 MinD superfamily P-loo 92.3 0.57 1.2E-05 46.8 8.1 63 26-90 164-226 (284)
427 PRK13869 plasmid-partitioning 92.2 0.38 8.3E-06 51.9 7.5 84 24-109 250-345 (405)
428 PRK00090 bioD dithiobiotin syn 92.2 0.19 4.1E-06 49.3 4.8 86 24-109 102-194 (222)
429 TIGR03029 EpsG chain length de 92.1 0.36 7.9E-06 49.0 6.9 63 24-87 211-274 (274)
430 KOG2484|consensus 92.1 0.39 8.5E-06 50.2 6.9 76 28-106 124-202 (435)
431 cd02035 ArsA ArsA ATPase funct 91.7 0.84 1.8E-05 44.7 8.6 67 25-91 113-183 (217)
432 COG0378 HypB Ni2+-binding GTPa 91.6 0.64 1.4E-05 44.2 7.2 26 203-228 174-199 (202)
433 COG0481 LepA Membrane GTPase L 91.6 0.36 7.8E-06 51.6 6.0 71 534-608 293-368 (603)
434 TIGR03453 partition_RepA plasm 91.5 0.61 1.3E-05 50.0 8.0 86 24-111 233-330 (387)
435 TIGR01281 DPOR_bchL light-inde 91.4 0.53 1.1E-05 47.6 7.1 83 23-111 113-200 (268)
436 CHL00072 chlL photochlorophyll 91.3 0.69 1.5E-05 47.5 7.8 86 24-116 114-204 (290)
437 COG3640 CooC CO dehydrogenase 91.3 0.22 4.9E-06 48.5 3.9 65 24-91 132-198 (255)
438 PRK14974 cell division protein 91.2 0.58 1.2E-05 49.0 7.2 63 24-91 221-292 (336)
439 PF00503 G-alpha: G-protein al 91.2 0.24 5.3E-06 53.1 4.6 82 10-91 219-316 (389)
440 KOG0462|consensus 90.7 0.36 7.9E-06 52.4 5.2 73 534-608 343-418 (650)
441 KOG0448|consensus 90.6 0.77 1.7E-05 51.2 7.6 87 16-105 189-287 (749)
442 KOG1673|consensus 90.5 2.5 5.5E-05 38.4 9.4 85 7-91 50-137 (205)
443 COG5019 CDC3 Septin family pro 90.2 1 2.2E-05 46.9 7.7 110 8-118 62-203 (373)
444 PHA02519 plasmid partition pro 90.0 1.1 2.4E-05 47.9 8.3 85 24-111 233-328 (387)
445 cd01900 YchF YchF subfamily. 90.0 0.59 1.3E-05 47.5 5.8 51 11-61 30-104 (274)
446 COG0532 InfB Translation initi 89.9 1.6 3.4E-05 47.7 9.2 78 262-340 415-496 (509)
447 PRK13705 plasmid-partitioning 89.5 1.5 3.3E-05 47.0 8.8 84 24-110 233-327 (388)
448 PRK10037 cell division protein 89.2 1.2 2.7E-05 44.5 7.5 58 24-89 116-174 (250)
449 PF00735 Septin: Septin; Inte 89.0 1.8 4E-05 44.2 8.6 99 8-107 43-172 (281)
450 cd02040 NifH NifH gene encodes 89.0 1.1 2.3E-05 45.3 7.0 86 24-110 115-205 (270)
451 PF10609 ParA: ParA/MinD ATPas 88.8 2 4.3E-05 34.9 6.9 60 28-88 3-63 (81)
452 TIGR00347 bioD dethiobiotin sy 88.6 1.2 2.5E-05 41.4 6.4 61 24-86 98-166 (166)
453 KOG3886|consensus 88.4 1.2 2.5E-05 43.4 6.1 95 9-103 35-141 (295)
454 cd02042 ParA ParA and ParB of 88.3 1.1 2.4E-05 38.0 5.6 45 26-72 40-84 (104)
455 PRK12727 flagellar biosynthesi 88.3 1.6 3.5E-05 48.2 8.0 76 24-102 427-507 (559)
456 KOG0467|consensus 88.2 0.3 6.6E-06 54.8 2.4 69 539-609 468-537 (887)
457 cd00550 ArsA_ATPase Oxyanion-t 88.1 1.6 3.5E-05 43.9 7.5 86 23-108 122-230 (254)
458 COG1161 Predicted GTPases [Gen 87.7 0.71 1.5E-05 48.2 4.8 61 30-92 14-75 (322)
459 TIGR00993 3a0901s04IAP86 chlor 87.3 5.2 0.00011 45.3 11.2 75 18-92 158-250 (763)
460 COG4108 PrfC Peptide chain rel 87.1 0.69 1.5E-05 49.0 4.2 61 549-610 402-462 (528)
461 KOG2485|consensus 87.1 1.6 3.5E-05 44.4 6.6 79 25-105 21-101 (335)
462 PRK06731 flhF flagellar biosyn 87.0 1.5 3.4E-05 44.4 6.6 65 25-92 154-225 (270)
463 KOG0096|consensus 86.9 0.76 1.6E-05 43.3 3.8 67 25-91 58-127 (216)
464 COG1192 Soj ATPases involved i 86.8 1.8 3.9E-05 43.4 7.0 83 23-107 117-206 (259)
465 TIGR03018 pepcterm_TyrKin exop 86.7 2.1 4.4E-05 41.5 7.1 57 27-86 150-207 (207)
466 PF05049 IIGP: Interferon-indu 86.5 4.8 0.0001 42.7 10.1 62 27-90 87-153 (376)
467 KOG3022|consensus 86.5 0.69 1.5E-05 46.2 3.6 69 21-90 152-222 (300)
468 PRK12726 flagellar biosynthesi 86.5 1.2 2.6E-05 47.1 5.6 71 25-100 285-363 (407)
469 PRK11889 flhF flagellar biosyn 86.5 1.5 3.3E-05 46.7 6.3 64 25-91 320-390 (436)
470 KOG3883|consensus 86.2 1.3 2.8E-05 40.2 4.8 66 26-91 60-131 (198)
471 TIGR01005 eps_transp_fam exopo 86.0 1.5 3.2E-05 51.5 6.7 67 24-91 654-721 (754)
472 PRK13235 nifH nitrogenase redu 85.9 7.6 0.00016 39.3 11.1 84 24-109 116-205 (274)
473 KOG1534|consensus 85.8 6.8 0.00015 37.8 9.6 67 26-92 98-178 (273)
474 PRK13233 nifH nitrogenase redu 85.5 1.6 3.5E-05 44.3 5.9 81 24-111 117-208 (275)
475 TIGR00491 aIF-2 translation in 85.3 5.2 0.00011 45.3 10.2 70 268-341 474-549 (590)
476 PRK13231 nitrogenase reductase 84.9 2.6 5.7E-05 42.4 7.2 87 23-111 111-199 (264)
477 PRK09841 cryptic autophosphory 84.4 2.4 5.3E-05 49.4 7.4 66 25-91 640-706 (726)
478 COG0455 flhG Antiactivator of 84.2 6 0.00013 39.9 9.2 78 26-106 113-193 (262)
479 COG0552 FtsY Signal recognitio 83.3 2.1 4.5E-05 44.2 5.4 78 24-108 220-312 (340)
480 TIGR01287 nifH nitrogenase iro 82.1 3.4 7.4E-05 41.9 6.7 84 25-110 115-204 (275)
481 PRK04004 translation initiatio 82.0 5.5 0.00012 45.2 8.8 69 268-340 476-550 (586)
482 COG0489 Mrp ATPases involved i 80.8 3.9 8.4E-05 41.4 6.4 68 22-91 163-232 (265)
483 PRK13230 nitrogenase reductase 80.7 4.5 9.8E-05 41.1 7.0 87 24-111 115-206 (279)
484 cd02033 BchX Chlorophyllide re 80.4 3.7 8.1E-05 42.9 6.3 85 21-116 144-239 (329)
485 PRK12723 flagellar biosynthesi 80.1 4.5 9.7E-05 43.3 6.9 66 24-91 253-325 (388)
486 KOG0099|consensus 79.9 4 8.7E-05 40.5 5.8 84 8-91 184-282 (379)
487 PRK11519 tyrosine kinase; Prov 79.9 5.1 0.00011 46.7 7.8 66 25-91 635-701 (719)
488 KOG0410|consensus 79.5 6.4 0.00014 40.5 7.2 68 24-91 224-307 (410)
489 KOG2423|consensus 78.3 3.7 8E-05 43.1 5.2 52 41-92 205-258 (572)
490 KOG1424|consensus 78.0 6.3 0.00014 42.9 7.0 69 38-109 163-233 (562)
491 KOG0447|consensus 77.5 8.6 0.00019 42.0 7.8 91 9-99 392-503 (980)
492 PRK13236 nitrogenase reductase 77.0 6.4 0.00014 40.5 6.8 85 22-110 118-210 (296)
493 PRK12724 flagellar biosynthesi 76.9 6.3 0.00014 42.5 6.7 74 24-100 298-380 (432)
494 PRK13234 nifH nitrogenase redu 76.9 4.3 9.3E-05 41.8 5.5 80 24-110 118-208 (295)
495 PRK05703 flhF flagellar biosyn 76.5 9.6 0.00021 41.4 8.2 75 24-101 298-379 (424)
496 KOG1486|consensus 76.1 2.7 5.8E-05 41.5 3.4 56 20-76 103-165 (364)
497 KOG3887|consensus 75.4 3.7 8E-05 40.3 4.1 68 27-94 76-151 (347)
498 cd03109 DTBS Dethiobiotin synt 74.8 27 0.00058 31.2 9.4 82 26-109 39-128 (134)
499 KOG2655|consensus 73.6 15 0.00033 38.6 8.3 103 9-112 60-193 (366)
500 KOG4423|consensus 73.4 3.1 6.7E-05 39.2 2.9 72 21-92 67-149 (229)
No 1
>KOG0465|consensus
Probab=100.00 E-value=5.3e-136 Score=1059.45 Aligned_cols=586 Identities=60% Similarity=0.943 Sum_probs=565.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||+|+.||+|||||+|+++++.|++++||+||||||+||.-||+||||+.||||+|+|++.||++||.++|||++++++|
T Consensus 79 md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP 158 (721)
T KOG0465|consen 79 MDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP 158 (721)
T ss_pred eehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
.|.|||||||.++++-.++++|+.+|+.+++.+|+|++..+.|.|++|++++++++|++++|..+...+||+++.+.+.+
T Consensus 159 ~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e 238 (721)
T KOG0465|consen 159 RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEE 238 (721)
T ss_pred eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
.|++|+|.+++.||+|+|.||+++.++.++|..++|+.++.+.|+|||||||++|.|||+|||++++|||+|.+...+++
T Consensus 239 ~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~ 318 (721)
T KOG0465|consen 239 KRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYAL 318 (721)
T ss_pred HHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cc-CcccceeecCCCCCCCCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 EN-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
.+ .++.+++.+.+.++.+ ||++++||+..+++|.+.|+|||+|+|++||.|||+++++++|+.+|++|+++..++|++
T Consensus 319 ~ke~~~~ekv~l~~~~d~~-Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~ 397 (721)
T KOG0465|consen 319 NKETNSKEKVTLSPSRDKD-PFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNE 397 (721)
T ss_pred ccCCCCccceEeccCCCCC-ceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhh
Confidence 64 2333456666653333 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCCcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcE
Q psy12559 320 VLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKET 399 (610)
Q Consensus 320 a~aGdiv~i~gl~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~ 399 (610)
+.|||||++.|+++.+|||++...+....+..+.+|+||++++|+|.+..|.+++.+||.++.+||||++++.|.|+||+
T Consensus 398 v~AG~I~alfGidcasGDTftd~~~~~~~m~si~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqT 477 (721)
T KOG0465|consen 398 VLAGDICALFGIDCASGDTFTDKQNLALSMESIHIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQT 477 (721)
T ss_pred hhccceeeeeccccccCceeccCccccceeeeeecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccc
Confidence 99999999999999999999944477889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEe
Q psy12559 400 LVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFID 479 (610)
Q Consensus 400 il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~ 479 (610)
+|+|||||||||..+||+++||+++++++|+|+|||||.++++++++||||+||.|||+++...++|++++....+.|.+
T Consensus 478 vIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~ 557 (721)
T KOG0465|consen 478 VISGMGELHLEIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSD 557 (721)
T ss_pred hhhccchhhHHHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987666789999
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhhHH
Q psy12559 480 ETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFS 559 (610)
Q Consensus 480 ~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~ 559 (610)
+++|+++|++|++|+++||.++|++|||.|+|+.||++.|.||.+|++||++.||+.|++.|++++...+.+ .++||+
T Consensus 558 ~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p--~iLEPI 635 (721)
T KOG0465|consen 558 EIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPP--RILEPI 635 (721)
T ss_pred cccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCc--ceeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 799999
Q ss_pred HHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 560 KAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 560 ~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
|++++.+|++..|.|..|++.|.++|.+..
T Consensus 636 M~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d 665 (721)
T KOG0465|consen 636 MNVEVTTPEEFQGTVIGDLNKRKAQITGID 665 (721)
T ss_pred eeeEEecchhhhhhhhhhhhhcccEEeccc
Confidence 999999999999999999999999999874
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-126 Score=1046.15 Aligned_cols=583 Identities=46% Similarity=0.711 Sum_probs=552.9
Q ss_pred CCChHHHHHhcceeecceeEEEecC-eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~-~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
||++++||+|||||+|+++++.|++ ++|||||||||+||+.||+||||++||||+|+||++||++||+++||||.++++
T Consensus 50 ~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~v 129 (697)
T COG0480 50 MDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGV 129 (697)
T ss_pred CCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCC
Confidence 7999999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 80 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 80 p~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
|+|+|||||||.++++..+.++++.+|+.++.++|+|++..+.|.||+|++.++++.|.. |......++|.+..+...
T Consensus 130 p~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~ 207 (697)
T COG0480 130 PRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAE 207 (697)
T ss_pred CeEEEEECccccccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 555566889988999999
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
++|..++|.+++.||+++++|+++.+++.+++..+|++.+..+.++|++||||++|.|++.|||+++++||+|.+.+.+.
T Consensus 208 e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~ 287 (697)
T COG0480 208 EAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIK 287 (697)
T ss_pred HHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
....++..+.+.. +.+.++|++|+|||+..+++ |+++|+|||||+|++|+.|+|.+++++++|.+|+.++|+++.+++
T Consensus 288 g~~~~~~~~~~~~-~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~ 366 (697)
T COG0480 288 GDLDDEIEKAVLR-KASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVD 366 (697)
T ss_pred ccCCccccchhcc-cCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecc
Confidence 3222222222222 32378999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCC
Q psy12559 319 EVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESK 397 (610)
Q Consensus 319 ~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etg 397 (610)
+++||||+++.|+ ++.+|||+| +.+.+..+..+.+|+||++++|+|++++|++||.++|++|++|||+++++.|+|||
T Consensus 367 ~~~AG~I~a~~Gl~~~~tGdTl~-~~~~~v~~~~~~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etg 445 (697)
T COG0480 367 EVPAGDIVALVGLKDATTGDTLC-DENKPVILESMEFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETG 445 (697)
T ss_pred cccCccEEEEEcccccccCCeee-cCCCccccccccCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcc
Confidence 9999999999999 779999999 44467889999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEE
Q psy12559 398 ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477 (610)
Q Consensus 398 e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f 477 (610)
|++|+|||||||||+++||+++|||++.+++|+|+|||||++++...++|+||+||+|||+++++++||+++ +.++.|
T Consensus 446 e~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~--~~~~~f 523 (697)
T COG0480 446 ETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLED--GSGFEF 523 (697)
T ss_pred cEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCC--CcceEE
Confidence 999999999999999999999999999999999999999999988899999999999999999999999975 558999
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhh
Q psy12559 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDN 557 (610)
Q Consensus 478 ~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e 557 (610)
.+.+.++.+|++|+++|++||+||+++|||+||||+||+|+|.|+++|++||++++|+.|+++|++.+..++.| .++|
T Consensus 524 ~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P--~lLE 601 (697)
T COG0480 524 VDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKP--VLLE 601 (697)
T ss_pred EeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCc--eEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 6999
Q ss_pred HHHHhchhccccceEeEEEeCCCCceEEEeccHH
Q psy12559 558 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGEL 591 (610)
Q Consensus 558 ~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~ 591 (610)
|++.+++.+|+|+++++++|+++||++|.+|.+.
T Consensus 602 Pi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~ 635 (697)
T COG0480 602 PIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQR 635 (697)
T ss_pred ceEEEEEEcchhhhchhHHhhhhcceEEeceeec
Confidence 9999999999999999999999999999998754
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2.7e-111 Score=955.09 Aligned_cols=583 Identities=45% Similarity=0.719 Sum_probs=549.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++|++|||||+++.+++.|++++|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+|+++.+.++|
T Consensus 50 ~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p 129 (693)
T PRK00007 50 MDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP 129 (693)
T ss_pred CCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecC-CCCCceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+||||||+.++++.++++++++.|+..+.+.++|++...+|.|++|++.+..+.|.. ..|..+...++|.....++.
T Consensus 130 ~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (693)
T PRK00007 130 RIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAE 209 (693)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999953 44666777889988899999
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
++|++|+|.+++.||++|++||+++.++.+++..++++++..+.++|||||||++|.|++.|||+|++++|+|.+++...
T Consensus 210 ~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~ 289 (693)
T PRK00007 210 EYREKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIK 289 (693)
T ss_pred HHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765421
Q ss_pred ccc-CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCccccc
Q psy12559 240 IEN-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDV 317 (610)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v 317 (610)
... +.........|+ +++|++++|||+.++++ |+++|+|||||+|++||+|++.++++.+++++|+.+.|.+..++
T Consensus 290 ~~~~~~~~~~~~~~~~--~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v 367 (693)
T PRK00007 290 GILPDGEEEEVERKAS--DDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEI 367 (693)
T ss_pred ccCCCccccceeecCC--CCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccc
Confidence 100 111234567788 89999999999999998 99999999999999999999998888999999999999999999
Q ss_pred CcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCC
Q psy12559 318 EEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPES 396 (610)
Q Consensus 318 ~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~et 396 (610)
+++.|||||++.|+ ++++||||+ +...+..++++.+|.|+++++|+|.+++|.+||.++|++|++|||+|++.+|++|
T Consensus 368 ~~~~aGdI~~i~gl~~~~~GdtL~-~~~~~~~l~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~et 446 (693)
T PRK00007 368 KEVRAGDIAAAVGLKDTTTGDTLC-DEKNPIILESMEFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEET 446 (693)
T ss_pred cccCCCcEEEEeCCccCCcCCEee-CCCCccccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCC
Confidence 99999999999999 889999999 5555667778888999999999999999999999999999999999999999999
Q ss_pred CcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcE
Q psy12559 397 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 476 (610)
Q Consensus 397 ge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~ 476 (610)
||++|+||||||||+|++||+++||+++++++|+|+|||||+++++..++|++|+||++||++|+++++|++. +.++.
T Consensus 447 ge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~--~~~~~ 524 (693)
T PRK00007 447 GQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEP--GKGYE 524 (693)
T ss_pred CCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCC--CCCcE
Confidence 9999999999999999999999999999999999999999999988889999999999999999999999975 56899
Q ss_pred EEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchh
Q psy12559 477 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRD 556 (610)
Q Consensus 477 f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~ 556 (610)
|+++++|+.+|++|++||++||++|+++||||||||+||+|+|+|+.+|++||++++|+.|++.|++.+..++.+ .++
T Consensus 525 f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p--~Ll 602 (693)
T PRK00007 525 FVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANP--VLL 602 (693)
T ss_pred EeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCC--EEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred hHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 557 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 557 e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
||++.+++.+|++.++.++.|+++||+.|.+|..
T Consensus 603 EPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~ 636 (693)
T PRK00007 603 EPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMED 636 (693)
T ss_pred cCcEEEEEEechhhhhhHHHHHHhCCCeEecccc
Confidence 9999999999999999999999999999998753
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.8e-110 Score=949.14 Aligned_cols=582 Identities=45% Similarity=0.709 Sum_probs=550.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++|++|||||+++.+++.|++++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|
T Consensus 48 ~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p 127 (691)
T PRK12739 48 MDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP 127 (691)
T ss_pred cCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecC-CCCCceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+|+||||+.++++.+.++++++.++..+.+.++|++...+|.|++|++++..+.|.. ..|..+...++|.++.+++.
T Consensus 128 ~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (691)
T PRK12739 128 RIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAE 207 (691)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999954 34666778889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
++|++|+|.+++.||+++|+||++.+++.+++..++++.+..++++||+||||++|.|++.|||+|++++|+|.+++..+
T Consensus 208 ~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~ 287 (691)
T PRK12739 208 EYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIK 287 (691)
T ss_pred HHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
.....+.......|+ +++|++++|||++++++ |+++|+|||||+|++||.|++.++++++++.+|+.++|++..+++
T Consensus 288 ~~~~~~~~~~~~~~~--~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 288 GINPDTEEEIERPAS--DDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIK 365 (691)
T ss_pred cccCCCCcceeeccC--CCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccccc
Confidence 221111134567888 89999999999999998 999999999999999999999998999999999999999999999
Q ss_pred cccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCC
Q psy12559 319 EVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESK 397 (610)
Q Consensus 319 ~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etg 397 (610)
+++|||||+|.|+ ++++||||+ +...+..++++.+|.|+++++|+|.+++|++||.+||++|+++||+|++++|++||
T Consensus 366 ~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~l~~~~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etg 444 (691)
T PRK12739 366 EVYAGDIAAAVGLKDTTTGDTLC-DEKAPIILESMEFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETG 444 (691)
T ss_pred ccCCCCEEEEeCCCcccCCCEEe-CCCCccccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCC
Confidence 9999999999999 789999999 55556677888889999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEE
Q psy12559 398 ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477 (610)
Q Consensus 398 e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f 477 (610)
|++|+||||||||+|++||+++||+++++|+|.|+|||||+++++..++|++|+||++||++++++++|++. +.++.|
T Consensus 445 e~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~--~~~~~~ 522 (691)
T PRK12739 445 QTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEE--GKGFEF 522 (691)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCC--CCCcEE
Confidence 999999999999999999999999999999999999999999998889999999999999999999999975 568999
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhh
Q psy12559 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDN 557 (610)
Q Consensus 478 ~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e 557 (610)
.+++.|+.+|++|++||++||+|||++||||||||+||+|+|+|+++|++||++++|+.|++.|++.+..++.+ .++|
T Consensus 523 ~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p--~LlE 600 (691)
T PRK12739 523 VNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGP--VILE 600 (691)
T ss_pred EEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCC--eeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 6999
Q ss_pred HHHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 558 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 558 ~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
|++.+++.+|++..+.++.|+++||+.|.++.
T Consensus 601 Pi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~ 632 (691)
T PRK12739 601 PIMKVEVVTPEEYMGDVIGDLNRRRGQIQGME 632 (691)
T ss_pred ceEEEEEEEchHhhhhHHHHHHhcCCeEECcc
Confidence 99999999999999999999999999998865
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.5e-109 Score=939.35 Aligned_cols=581 Identities=45% Similarity=0.716 Sum_probs=551.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++||+|||||+++..++.|++++++|||||||.||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|
T Consensus 50 ~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p 129 (689)
T TIGR00484 50 MDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP 129 (689)
T ss_pred cCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||||+.++++.+.+++|++.++..+.+.++|++...+|.|++|++.+..++|+...+..+...++|+++.+++.+
T Consensus 130 ~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (689)
T TIGR00484 130 RIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKE 209 (689)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987778888888999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
+|++|+|++++.||+|||+||+++.++.+++.+++++++..+.++|||||||++|.|++.|||+|+.++|+|.+++....
T Consensus 210 ~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~ 289 (689)
T TIGR00484 210 LRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKG 289 (689)
T ss_pred HHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
...+........|+ +++|++|+|||+.++++ |+++|+|||||+|+.||+|++.++++++++++|+.+.|++..++++
T Consensus 290 ~~~~~~~~~~~~~~--~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~ 367 (689)
T TIGR00484 290 IDPDTEKEIERKAS--DDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKE 367 (689)
T ss_pred cCCCCCceeeecCC--CCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccc
Confidence 11111234567788 89999999999999998 9999999999999999999999888899999999999999999999
Q ss_pred ccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCc
Q psy12559 320 VLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKE 398 (610)
Q Consensus 320 a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge 398 (610)
++|||||++.|+ ++.+||||+ +...+..++++.+|+|+++++|+|.+++|.+||.++|++|.++||+|++.+|++|||
T Consensus 368 ~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~~~~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge 446 (689)
T TIGR00484 368 VRAGDICAAIGLKDTTTGDTLC-DPKIDVILERMEFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQ 446 (689)
T ss_pred cCCCCEEEEcCCCCCCCCCEEe-CCCCccccCCCCCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCC
Confidence 999999999999 789999999 566667778888899999999999999999999999999999999999999999999
Q ss_pred EEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEE
Q psy12559 399 TLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478 (610)
Q Consensus 399 ~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~ 478 (610)
++|+||||||||++++||+++||+++++++|+|+|||||+++++..++|++|+||++||++|+++++|++. .++.|.
T Consensus 447 ~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~---~g~~~~ 523 (689)
T TIGR00484 447 TIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEP---KGYEFV 523 (689)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCC---CCcEEE
Confidence 99999999999999999999999999999999999999999988889999999999999999999999974 388999
Q ss_pred eccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhhH
Q psy12559 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNF 558 (610)
Q Consensus 479 ~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~ 558 (610)
+++.+|.+|++|++||++||+||+++||||||||+||+|+|+++++|++||++++|+.|++.+++.+..++.+ .++||
T Consensus 524 ~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~--~LlEP 601 (689)
T TIGR00484 524 NEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANP--VLLEP 601 (689)
T ss_pred EeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCC--eeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 69999
Q ss_pred HHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 559 SKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 559 ~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
++.+++.+|++..+.++.|+++||+.|.+|.
T Consensus 602 i~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~ 632 (689)
T TIGR00484 602 IMKVEVEVPEEYMGDVMGDLSSRRGIIEGME 632 (689)
T ss_pred cEEEEEEecHHHhHhHHHHHHhcCCeEeccc
Confidence 9999999999999999999999999999875
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.8e-106 Score=918.07 Aligned_cols=581 Identities=39% Similarity=0.633 Sum_probs=547.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||+||+++..++.|+++++||||||||.||..++.++++.+|++|+|+|+.+|++.||+.+|+++.+.++|
T Consensus 48 ~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p 127 (687)
T PRK13351 48 TDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP 127 (687)
T ss_pred CCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCC-CCCceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGP-LGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 159 (610)
+++|+||+|+.++++.+++++|++.|+..+.++|+|++.+..|.|++|++.++++.|... .+..+...++|+++.+++.
T Consensus 128 ~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (687)
T PRK13351 128 RLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVE 207 (687)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999653 3566777889999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
++|++|+|.+++.||+++|+||++..++.+++..++++++..++++|||||||++|.|++.|||+|++++|+|.+.+..+
T Consensus 208 ~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~ 287 (687)
T PRK13351 208 EAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPR 287 (687)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
... +........|+ +++|++++|||++++++ |+++|+|||||+|++||+|++.++++.+++.+|+.++|.+..+++
T Consensus 288 ~~~-~~~~~~~~~~~--~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~ 364 (687)
T PRK13351 288 GSK-DNGKPVKVDPD--PEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVD 364 (687)
T ss_pred ccC-CCCCceeecCC--CCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECC
Confidence 221 11122346777 89999999999999998 999999999999999999999998889999999999999999999
Q ss_pred cccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCC
Q psy12559 319 EVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESK 397 (610)
Q Consensus 319 ~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etg 397 (610)
++.||||+++.|+ ++.+||||+ +......++++.+|+|+++++|+|.+++|.++|.++|++|.+|||+|++++|++||
T Consensus 365 ~~~aGdI~~i~gl~~~~~gdtl~-~~~~~~~~~~~~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etg 443 (687)
T PRK13351 365 RAKAGDIVAVAGLKELETGDTLH-DSADPVLLELLTFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETG 443 (687)
T ss_pred ccCCCCEEEEECcccCccCCEEe-CCCCccccCCCCCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCC
Confidence 9999999999999 789999999 55555566778889999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEE
Q psy12559 398 ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477 (610)
Q Consensus 398 e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f 477 (610)
|++|+||||||||++++||+++|++++++++|.|+|||||++.++..++|++++||++||++|+++++|++. +.++.|
T Consensus 444 e~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~--~~g~~~ 521 (687)
T PRK13351 444 QTILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER--GAGFIF 521 (687)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC--CCCcEE
Confidence 999999999999999999999999999999999999999999988889999999999999999999999975 567999
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhh
Q psy12559 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDN 557 (610)
Q Consensus 478 ~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e 557 (610)
.+.++|+.+|++|++||++||++||++||||||||+||+|+|+++++|+++|++++|+.|++.+++.+..++.+ .++|
T Consensus 522 ~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~--~LlE 599 (687)
T PRK13351 522 VSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANP--VLLE 599 (687)
T ss_pred eecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCC--eeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998886 6999
Q ss_pred HHHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 558 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 558 ~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
|++.+++.+|++..+.++.|+++||+.|.++.
T Consensus 600 Pi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 631 (687)
T PRK13351 600 PIMELEITVPTEHVGDVLGDLSQRRGRIEGTE 631 (687)
T ss_pred ceEEEEEEechHhhhhHHHHHHhCCcEEecee
Confidence 99999999999999999999999999999875
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=3.3e-101 Score=875.48 Aligned_cols=578 Identities=45% Similarity=0.703 Sum_probs=545.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++||+|||||+++..++.|+++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+++...++|
T Consensus 35 ~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p 114 (668)
T PRK12740 35 MDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP 114 (668)
T ss_pred CCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
.++|+||+|+..+++.++++++++.|+..+.+.++|+..+..|.|++|++.++.++|+ .+..+...++|+...+++.+
T Consensus 115 ~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 192 (668)
T PRK12740 115 RIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEE 192 (668)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEEEECccceEEEec--CCCeeEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 46667778889888899999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
+|+.|+|.+++.||+++++|+++..++.+++...+++.+..+.++|||+|||++|.|++.|||+|+.++|+|.+++.+..
T Consensus 193 ~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~ 272 (668)
T PRK12740 193 AREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDG 272 (668)
T ss_pred HHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986543211
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
. .........|+ +++|++++|||++++++ |+++|+|||||+|++||+|++.++++.+++.+|+.++|++..++++
T Consensus 273 ~--~~~~~~~~~~~--~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~ 348 (668)
T PRK12740 273 E--DGEEGAELAPD--PDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDE 348 (668)
T ss_pred C--CCccccccccC--CCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCc
Confidence 0 11123345677 88999999999999998 9999999999999999999999888889999999999999999999
Q ss_pred ccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCc
Q psy12559 320 VLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKE 398 (610)
Q Consensus 320 a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge 398 (610)
+.||||+++.|+ ++.+||||+ +...+..++++.+++|+++++|+|.+++|.++|.++|++|+++||+|++..|++|||
T Consensus 349 ~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~~~~~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge 427 (668)
T PRK12740 349 AVAGDIVAVAKLKDAATGDTLC-DKGDPILLEPMEFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQ 427 (668)
T ss_pred cCCCCEEEEeccCccCCCCEEe-CCCCccccCCCCCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCC
Confidence 999999999999 789999999 555566778888899999999999999999999999999999999999999999999
Q ss_pred EEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEE
Q psy12559 399 TLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFI 478 (610)
Q Consensus 399 ~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~ 478 (610)
++|+|+||||||++++||+++||+++.+++|+|+|||||.++++..++|++++||++||++|+++++|++. +.++.|.
T Consensus 428 ~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~--~~~~~f~ 505 (668)
T PRK12740 428 TILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPR--GEGFEFV 505 (668)
T ss_pred EEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCC--CCceEEe
Confidence 99999999999999999999999999999999999999999988889999999999999999999999975 5689999
Q ss_pred eccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhhH
Q psy12559 479 DETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNF 558 (610)
Q Consensus 479 ~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~ 558 (610)
+++.++.+|++|++||++||++|+++||||||||+||+|+|+++.+|+++|++++|+.|++.+++.+..++.+ .++||
T Consensus 506 ~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~--~LlEP 583 (668)
T PRK12740 506 DKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKP--VLLEP 583 (668)
T ss_pred ecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCC--eeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876 69999
Q ss_pred HHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 559 SKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 559 ~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
++.+++.+|++..+.++.+++.||+.|.++.
T Consensus 584 i~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~ 614 (668)
T PRK12740 584 IMKVEVSVPEEFVGDVIGDLSSRRGRILGME 614 (668)
T ss_pred eEEEEEEechhhhhhHHHHHHhCCCeEeccc
Confidence 9999999999999999999999999998875
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.7e-97 Score=855.50 Aligned_cols=570 Identities=22% Similarity=0.326 Sum_probs=491.7
Q ss_pred CCChHHHHHhcceeecceeEEEec----------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK----------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 64 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~----------------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~ 64 (610)
||++++||+|||||+++.+++.|. +++|||||||||.||..++.+|++.+|+||+||||.+|++
T Consensus 57 ~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~ 136 (843)
T PLN00116 57 TDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136 (843)
T ss_pred ccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc
Confidence 699999999999999999999994 7899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCeEEEEecccCC-------C----CCHHHHHHHHHHH---hCCCee-Eeec-ccc----CCCCee
Q psy12559 65 SQTLTVNRQMKRYDVPCIAFINKLDRL-------G----ADPYRVINQMRQK---VGHNAA-FLQI-PIG----LGSETK 124 (610)
Q Consensus 65 ~qt~~v~~~~~~~~ip~i~~iNKiDr~-------~----~~~~~~~~~i~~~---l~~~~~-~~~~-p~~----~~~~~~ 124 (610)
.||+++|+++.+.++|+|+||||||++ . +++++++++++.. ++.... ++++ |.. +++.+.
T Consensus 137 ~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~ 216 (843)
T PLN00116 137 VQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLH 216 (843)
T ss_pred ccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeeccc
Confidence 999999999999999999999999998 3 6788888888832 221111 2344 544 478889
Q ss_pred EEEEcccceeE---------------------eecCCCCCceEeec--Cc---hhHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy12559 125 GIIDLIQRKAI---------------------YFEGPLGDNLRIEE--IP---ADLKKEAESKRQELIEHVAEGDEILGE 178 (610)
Q Consensus 125 g~~d~~~~~~~---------------------~~~~~~g~~~~~~~--~~---~~~~~~~~~~~~~l~e~~~~~dd~l~e 178 (610)
||++.+.+.+. +|+++ +..+...+ .+ ..+.+++.+++.+|+|.+++.|+++++
T Consensus 217 ~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~-~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle 295 (843)
T PLN00116 217 GWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA-TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLW 295 (843)
T ss_pred CEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC-CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99988876552 44322 33333333 33 235556678999999999999999999
Q ss_pred hhhcC--CCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc------Ccccceee
Q psy12559 179 MFLEE--KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVV 250 (610)
Q Consensus 179 ~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~ 250 (610)
+|+++ ..++.+++.. +++.+....+.|+|++| +.|||+|++++|+|.+++..+... .......+
T Consensus 296 ~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 367 (843)
T PLN00116 296 PMLEKLGVTLKSDEKEL-MGKALMKRVMQTWLPAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAI 367 (843)
T ss_pred HHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhcCCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchh
Confidence 99987 5799999987 99999999999999976 789999999999998765433221 11223467
Q ss_pred cCCCCCCCCCeEEEEEEEEeeCC-cc-EEEEEEEeceecCCCEEE----ecCCCeE-----EEeceEEEeccCcccccCc
Q psy12559 251 LNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCYQGKLRKGEMIY----NVRTDKK-----VRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 251 ~~~~~~~~~p~~~~V~k~~~~~~-G~-i~~~RV~sG~l~~g~~v~----~~~~~~~-----~~v~~i~~~~g~~~~~v~~ 319 (610)
..|+ +++|++++|||+.++++ |+ ++|+|||||+|++||+|+ |...++. +++++|+.++|++..++++
T Consensus 368 ~~~d--~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~ 445 (843)
T PLN00116 368 RNCD--PNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVED 445 (843)
T ss_pred hcCC--CCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcE
Confidence 8888 89999999999999877 76 999999999999999998 4444433 5899999999999999999
Q ss_pred ccCCCEEEEcCC-Cc-ccCceEecCCC--CccccccccCC-CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcC
Q psy12559 320 VLAGDIFALFGV-DC-ASGDTFVTDKN--NSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDP 394 (610)
Q Consensus 320 a~aGdiv~i~gl-~~-~~Gdtl~~~~~--~~~~~~~~~~~-~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~ 394 (610)
++|||||+|.|+ +. .+||||+ +.. .+..++++.+| +|+++++|+|.+++|++||.+||++|.+|||+|++. ++
T Consensus 446 ~~AGdI~ai~gl~~~~~~gdTL~-~~~~~~~~~l~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~-~~ 523 (843)
T PLN00116 446 VPCGNTVAMVGLDQFITKNATLT-NEKEVDAHPIKAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCT-IE 523 (843)
T ss_pred ECCCCEEEEEeecccccCCceec-CCcccCCccccccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEE-Ec
Confidence 999999999999 54 4499998 444 45677788888 999999999999999999999999999999999985 58
Q ss_pred CCCcEEEEEechhhHHHHHHHHhhhc--ccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCC-
Q psy12559 395 ESKETLVSGMGELHLEIYAQRMEREY--NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA- 471 (610)
Q Consensus 395 etge~il~g~GelhLei~~~~L~~~~--~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~- 471 (610)
+|||++|+||||||||+|++||+++| |+++++|+|+|+|||||.++++..++++ + +++|++|+++++|++++.
T Consensus 524 etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~ 599 (843)
T PLN00116 524 ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLA 599 (843)
T ss_pred CCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHH
Confidence 99999999999999999999999999 9999999999999999999987777743 4 568899999999997530
Q ss_pred ------------------------------------------CCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccC
Q psy12559 472 ------------------------------------------NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSG 509 (610)
Q Consensus 472 ------------------------------------------~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g 509 (610)
.+++.|++++.|..+.+++++||++||++|+++|||||
T Consensus 600 ~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g 679 (843)
T PLN00116 600 EAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAE 679 (843)
T ss_pred HHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccC
Confidence 13389999999877778888999999999999999999
Q ss_pred CceeeeEEEEecCcccC--CCCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEe
Q psy12559 510 SRVAGVRMVLKDGDNHM--VDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG 587 (610)
Q Consensus 510 ~pv~~v~v~l~~~~~h~--~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~g 587 (610)
|||+||+|+|+|+.+|+ .++++++|+.|++.|++++..++.+ .++||++.+++.+|++.++.++.|++.||+.|.+
T Consensus 680 ~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p--~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~ 757 (843)
T PLN00116 680 ENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKP--RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFE 757 (843)
T ss_pred CeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCC--EEeeceeEEEEEccHHHHhHHHHHHHhcCCccce
Confidence 99999999999999998 6777889999999999999999886 7999999999999999999999999999999998
Q ss_pred cc
Q psy12559 588 MG 589 (610)
Q Consensus 588 mg 589 (610)
+.
T Consensus 758 ~~ 759 (843)
T PLN00116 758 EM 759 (843)
T ss_pred ee
Confidence 65
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=5.2e-97 Score=849.65 Aligned_cols=566 Identities=26% Similarity=0.381 Sum_probs=490.2
Q ss_pred CCChHHHHHhcceeecceeEEEec----------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~----------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v 70 (610)
||++++||+|||||+++.+++.|. ++.|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+
T Consensus 57 ~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~ 136 (836)
T PTZ00416 57 TDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETV 136 (836)
T ss_pred cccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHH
Confidence 699999999999999999999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecccCC----C-------CCHHHHHHHHHHHhC-----------CCeeEeeccccCCC-------
Q psy12559 71 NRQMKRYDVPCIAFINKLDRL----G-------ADPYRVINQMRQKVG-----------HNAAFLQIPIGLGS------- 121 (610)
Q Consensus 71 ~~~~~~~~ip~i~~iNKiDr~----~-------~~~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~------- 121 (610)
|+++.+.++|+|+|+||||++ + +++++++++++..|+ .+|.+.|+|++++.
T Consensus 137 ~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~ 216 (836)
T PTZ00416 137 LRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTL 216 (836)
T ss_pred HHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeeh
Confidence 999999999999999999998 5 788888999998775 37888899998764
Q ss_pred ---------CeeEEEEcccceeE---eecCCCCCceEeec-------CchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhc
Q psy12559 122 ---------ETKGIIDLIQRKAI---YFEGPLGDNLRIEE-------IPADLKKEAESKRQELIEHVAEGDEILGEMFLE 182 (610)
Q Consensus 122 ---------~~~g~~d~~~~~~~---~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 182 (610)
+|.+.++.+.++.| +|+. .+..+...+ +|..|.+++.++|.+|+|.+++.||+++++|++
T Consensus 217 ~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~ 295 (836)
T PTZ00416 217 TTFARIYAKKFGVEESKMMERLWGDNFFDA-KTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLK 295 (836)
T ss_pred HHhhhhhhhhcCCcHHHHHHHHhccccccC-CCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 22222234444444 5543 244343333 456788999999999999999999999999999
Q ss_pred --CCCCCHHHH--HH-HHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc------Ccccceeec
Q psy12559 183 --EKSISEDDI--KK-AIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQEDKKVVL 251 (610)
Q Consensus 183 --~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~~~~~~ 251 (610)
+..++.+++ .. .+.+.+. ++|+|+ ++.|||+|++++|+|.+++..+... .++......
T Consensus 296 ~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv----------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (836)
T PTZ00416 296 SLNISLTGEDKELTGKPLLKAVM-QKWLPA----------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIR 364 (836)
T ss_pred HcCCCcChHHhccChHHHHHHHH-HHHhch----------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceee
Confidence 668888874 23 5666666 899998 6899999999999998765432211 112234567
Q ss_pred CCCCCCCCCeEEEEEEEEeeCC-cc-EEEEEEEeceecCCCEEE----ecCCCeEE-----EeceEEEeccCcccccCcc
Q psy12559 252 NPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCYQGKLRKGEMIY----NVRTDKKV-----RVSRLVRLHSNEMEDVEEV 320 (610)
Q Consensus 252 ~~~~~~~~p~~~~V~k~~~~~~-G~-i~~~RV~sG~l~~g~~v~----~~~~~~~~-----~v~~i~~~~g~~~~~v~~a 320 (610)
.|+ +++|++|+|||+.++++ |+ ++|+|||||+|+.||+|+ +...+.++ +|++||.++|++..++++|
T Consensus 365 ~~d--~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v 442 (836)
T PTZ00416 365 NCD--PNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDV 442 (836)
T ss_pred ccC--CCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEE
Confidence 888 89999999999999988 88 899999999999999998 44444444 5999999999999999999
Q ss_pred cCCCEEEEcCC-C--cccCceEecCCCCccccccccCC-CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCC
Q psy12559 321 LAGDIFALFGV-D--CASGDTFVTDKNNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPES 396 (610)
Q Consensus 321 ~aGdiv~i~gl-~--~~~Gdtl~~~~~~~~~~~~~~~~-~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~et 396 (610)
+|||||+|.|+ + +++| ||+ +...+..+.++.++ +|+++++|+|.+++|++||.++|++|.+|||++++.. ++|
T Consensus 443 ~AGdI~~i~gl~~~~~~tg-TL~-~~~~~~~l~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~et 519 (836)
T PTZ00416 443 PCGNTVGLVGVDQYLVKSG-TIT-TSETAHNIRDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EES 519 (836)
T ss_pred CCCCEEEEEecccceecce-eec-CCCCcccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCC
Confidence 99999999999 4 7899 998 55556677777775 9999999999999999999999999999999999865 899
Q ss_pred CcEEEEEechhhHHHHHHHHhhhc-ccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCC----
Q psy12559 397 KETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA---- 471 (610)
Q Consensus 397 ge~il~g~GelhLei~~~~L~~~~-~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~---- 471 (610)
||++|+||||+|||+|++||+++| +|++++|+|+|+|||||.++++..++|++++|+ ++|+++++|++++.
T Consensus 520 gE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~~~~~~ 595 (836)
T PTZ00416 520 GEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEELAEAI 595 (836)
T ss_pred CCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccccceEEEECCCCC----eeEEEEEEECCHHHHhHh
Confidence 999999999999999999999999 999999999999999999999999999999775 49999999997530
Q ss_pred ------------------CCCcE-----------EEeccccCCC------CcchHH----HHHHHHHHHHHcCCccCCce
Q psy12559 472 ------------------NTKLE-----------FIDETVGTNV------PKPFLP----AIIKGFKQMCEKGCLSGSRV 512 (610)
Q Consensus 472 ------------------~~~~~-----------f~~~~~g~~~------~~~~~~----av~~g~~~a~~~Gpl~g~pv 512 (610)
..++. |.+++.|+++ +++|++ ||++||+||+++||||||||
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv 675 (836)
T PTZ00416 596 EEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENM 675 (836)
T ss_pred hcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 01333 7777788877 667777 99999999999999999999
Q ss_pred eeeEEEEecCcccC--CCCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 513 AGVRMVLKDGDNHM--VDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 513 ~~v~v~l~~~~~h~--~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
+||+|+|+++++|+ +++++++|+.|+++|++.+..++.+ .++||++.+++.+|++.+++++.|++.||+.|.++.
T Consensus 676 ~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p--~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~ 752 (836)
T PTZ00416 676 RGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASP--RLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEE 752 (836)
T ss_pred cceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCC--EEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcc
Confidence 99999999999999 7899999999999999999999987 699999999999999999999999999999998865
No 10
>KOG0464|consensus
Probab=100.00 E-value=3.8e-97 Score=735.65 Aligned_cols=569 Identities=32% Similarity=0.484 Sum_probs=498.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+||+..||||||||+|++++|.|++|+|||||||||+||.-||+|++|+.|||+.|+||+.||++||.++|||+.++++|
T Consensus 77 tdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip 156 (753)
T KOG0464|consen 77 TDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP 156 (753)
T ss_pred HHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCe-eEEEEcccceeEee--cCCCCCceEeecC----chh
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSET-KGIIDLIQRKAIYF--EGPLGDNLRIEEI----PAD 153 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~-~g~~d~~~~~~~~~--~~~~g~~~~~~~~----~~~ 153 (610)
.++||||||+..++|+.++++++++||..++.+|+|+++..+| .|++|++..+.+.| +++.|..|...|+ .++
T Consensus 157 ~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpe 236 (753)
T KOG0464|consen 157 AHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPE 236 (753)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHH
Confidence 9999999999999999999999999999999999999999998 99999999999999 4556777777765 356
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhhhcC-----CCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHh
Q psy12559 154 LKKEAESKRQELIEHVAEGDEILGEMFLEE-----KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY 228 (610)
Q Consensus 154 ~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~-----~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~ 228 (610)
+.+...+++.+|++++|+.|+++.++||+. +.++.+++..++++.+...+..|++||||.+|.|+++|||++.-|
T Consensus 237 l~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmy 316 (753)
T KOG0464|consen 237 LAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMY 316 (753)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhc
Confidence 778888999999999999999999998875 357889999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEE
Q psy12559 229 LPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 307 (610)
Q Consensus 229 lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~ 307 (610)
+|||.+++.. ..+ - .+..++++.||+.+|.. |.++|.|+|||+++.+-.++|.+....+.+.+++
T Consensus 317 lpspeernye-flq-----------w--ykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~ 382 (753)
T KOG0464|consen 317 LPSPEERNYE-FLQ-----------W--YKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLF 382 (753)
T ss_pred cCChhhcchH-HHh-----------h--hhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhh
Confidence 9999887521 110 0 45678999999999977 9999999999999999999999999999999999
Q ss_pred EeccCcccccCcccCCCEEEEcCC-CcccCceEecCC-----------------------CCccccccccCCCceEEEEE
Q psy12559 308 RLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDK-----------------------NNSISLESIYVADPVVSMSI 363 (610)
Q Consensus 308 ~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~-----------------------~~~~~~~~~~~~~Pv~~~ai 363 (610)
...++++..++++.||+|...+|+ .+.+|||+..++ .+...+..+++|.|||+|.|
T Consensus 383 ~pfade~~~i~qlsagnialt~glk~tatgdtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~i 462 (753)
T KOG0464|consen 383 LPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCI 462 (753)
T ss_pred ccchhhhhhhhhcccccEEEEecceeeccCCeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEec
Confidence 999999999999999999999999 789999998421 12345778899999999999
Q ss_pred EeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeeccccee
Q psy12559 364 KAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDF 443 (610)
Q Consensus 364 ep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~ 443 (610)
||.+-..++.+..+|+.|.+||||+.+..|++|||+++.||||||+|++-+|+||+||+++-+++.+|+|||+|......
T Consensus 463 epps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~ 542 (753)
T KOG0464|consen 463 EPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRA 542 (753)
T ss_pred cCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred eeeeeeccCCCCccEEEEEEEEeCCCCCC---CCcEEEe--ccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEE
Q psy12559 444 DYLHKKQSGGSGQYGRVIGTLEPLPPSAN---TKLEFID--ETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMV 518 (610)
Q Consensus 444 ~~~~~~~~g~~~~~~~v~~~~ePl~~~~~---~~~~f~~--~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~ 518 (610)
..+..+..|...+...|.+.+.|-+.... ..++|+- .+.. .+.+--+.||++|+..||.+|||+|+|+.+|+++
T Consensus 543 t~~ld~~lgdkk~~~~velear~~~tqa~ip~kkiefe~~es~n~-~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~it 621 (753)
T KOG0464|consen 543 TAKLDDGLGDKKHLEFVELEARLEETQAHIPFKKIEFELAESANE-GLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAIT 621 (753)
T ss_pred hhhhhccccccccceEEEEEeeeccccccccceeEEeeccccccc-hhhhhHHHHHHhhHHHHHhcCCccCCchhheeEe
Confidence 55555556655555555555555332111 1234542 2111 1223348999999999999999999999999999
Q ss_pred EecCcccCCCCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccc-cceEeEEEeCCCCceEEE
Q psy12559 519 LKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKE-DPTFHFFYDPESKETLVS 586 (610)
Q Consensus 519 l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~e-dp~~~v~~d~~t~~~~I~ 586 (610)
|+.+-.|..-.++.-...++..++.++.-++.. .++||.|.|++-... ||+-.+..|+..||+.+.
T Consensus 622 l~~~~i~~gk~n~alisac~qkcvqealkkad~--~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e 688 (753)
T KOG0464|consen 622 LHECIIHGGKINPALISACAQKCVQEALKKADK--QLLEPLMELEIEIANDDPLQPILADLAQRRAHFE 688 (753)
T ss_pred eEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhH--HHhhhhhheEEEEecCCCccHHHHHHHHhhccch
Confidence 999999998778877888888888887777764 799999999987655 888777777766666544
No 11
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=3.6e-92 Score=801.07 Aligned_cols=532 Identities=30% Similarity=0.417 Sum_probs=463.3
Q ss_pred CCChHHHHHhcceeecceeE----EEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 1 MDSMELERQRGITIQSAATY----TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~----~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
+|++++|++||+||+++.++ +.|+++++||||||||.||..++.++++.+|+||+|+|+.+|++.||+.+|+++.+
T Consensus 57 ~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~ 136 (720)
T TIGR00490 57 LDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK 136 (720)
T ss_pred cCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH
Confidence 59999999999999999877 67889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHH
Q psy12559 77 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKK 156 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (610)
.++|+++|+||||+..++++...++++++|+..+..++.++... +++++
T Consensus 137 ~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------~~~~~-- 185 (720)
T TIGR00490 137 ENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLIKAM-----------------------------APEEF-- 185 (720)
T ss_pred cCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhhhcc-----------------------------CCHHH--
Confidence 99999999999999999999999999999876544333332110 01111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhc---------CCCCCHHHHHHHHHHhhhcC--ceeEEEeccccCCccHHHHHHHH
Q psy12559 157 EAESKRQELIEHVAEGDEILGEMFLE---------EKSISEDDIKKAIRRSTLTR--KFTPVLVGTALKNKGVQTLLDAV 225 (610)
Q Consensus 157 ~~~~~~~~l~e~~~~~dd~l~e~~l~---------~~~~~~~~l~~~l~~~~~~~--~~~Pv~~~Sa~~~~gv~~Lld~i 225 (610)
+..+.+..++.++.|++.|++ +..++.+++.+.+....... .|+|+ ++.|||+|
T Consensus 186 -----~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv----------~~~Lld~i 250 (720)
T TIGR00490 186 -----RDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPL----------HQVVLDMV 250 (720)
T ss_pred -----hhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhH----------HHHHHHHH
Confidence 112334556677777888776 55667777777776554444 68888 58899999
Q ss_pred HHhCCCCCCcccccccc------CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC
Q psy12559 226 LDYLPNPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD 298 (610)
Q Consensus 226 ~~~lPsp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~ 298 (610)
++++|+|.+++..+.+. +++......+|+ +++|++++|||+.++++ |+++|+|||||+|++||+|++.+++
T Consensus 251 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~ 328 (720)
T TIGR00490 251 IRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCD--PKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK 328 (720)
T ss_pred HHhCCChhhhhhhcccccccCCCCccchhhcccCC--CCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC
Confidence 99999998765333221 111224567788 89999999999999988 9999999999999999999999999
Q ss_pred eEEEeceEEEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCC-ccccccc-cCCCceEEEEEEeCCCcCHHHHH
Q psy12559 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNN-SISLESI-YVADPVVSMSIKAVNNKDRDNFS 375 (610)
Q Consensus 299 ~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~-~~~~~~~-~~~~Pv~~~aiep~~~~d~~kL~ 375 (610)
+.++|++|+.++|.+..+++++.|||||++.|+ ++.+||||+ +... ...++++ .+|+|+++++|+|.+++|++||.
T Consensus 329 ~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~-~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~ 407 (720)
T TIGR00490 329 AKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETIC-TTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLI 407 (720)
T ss_pred CeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCceee-cCCcccccCcccccCCCceEEEEEEECCHHHHHHHH
Confidence 999999999999999999999999999999999 788999999 4443 3345555 47899999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccce-eeeeeeeccCCC
Q psy12559 376 KAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGS 454 (610)
Q Consensus 376 ~~L~~L~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~-~~~~~~~~~g~~ 454 (610)
++|++|++|||+|++.+|++|||++|+||||||||++++||+++||+++++++|+|+|||||++.++ ..++| .
T Consensus 408 ~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~ 481 (720)
T TIGR00490 408 EVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------P 481 (720)
T ss_pred HHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 45443 3
Q ss_pred CccEEEEEEEEeCCCCC---------------------------------------CCCcEEEeccccCCCCcchHHHHH
Q psy12559 455 GQYGRVIGTLEPLPPSA---------------------------------------NTKLEFIDETVGTNVPKPFLPAII 495 (610)
Q Consensus 455 ~~~~~v~~~~ePl~~~~---------------------------------------~~~~~f~~~~~g~~~~~~~~~av~ 495 (610)
++|++|+++++|++++. +++|.|+++++|+.+|++|++||+
T Consensus 482 ~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~ 561 (720)
T TIGR00490 482 NKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELIL 561 (720)
T ss_pred CCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHH
Confidence 47899999999997531 168999999999999999999999
Q ss_pred HHHHHHHHcCCccCCceeeeEEEEecCcccC--CCCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEe
Q psy12559 496 KGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 573 (610)
Q Consensus 496 ~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~--~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~ 573 (610)
+||+||+++||||||||+||+|+|+|+++|+ +||++++|+.|+++|++.+..++.+ .++||++.+++.+|++.+++
T Consensus 562 ~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p--~LlEPi~~~ei~~p~~~~g~ 639 (720)
T TIGR00490 562 EGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKP--VLLEPYQKVFINVPQDMMGA 639 (720)
T ss_pred HHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCC--eEecceEEEEEEccHHHHhH
Confidence 9999999999999999999999999999995 8999999999999999999999987 69999999999999999999
Q ss_pred EEEeCCCCceEEEecc
Q psy12559 574 FFYDPESKETLVSGMG 589 (610)
Q Consensus 574 v~~d~~t~~~~I~gmg 589 (610)
++.|+++||+.|.+|.
T Consensus 640 v~~~L~~RRg~i~~~~ 655 (720)
T TIGR00490 640 ATREIQNRRGQILEMK 655 (720)
T ss_pred HHHHHhhCCceeeeec
Confidence 9999999999999985
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3.8e-91 Score=794.81 Aligned_cols=538 Identities=30% Similarity=0.412 Sum_probs=434.5
Q ss_pred CCChHHHHHhcceeecceeEEEe----cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 1 MDSMELERQRGITIQSAATYTLW----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~----~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
||++++||+|||||+++.+++.| ++++|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+
T Consensus 58 ~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~ 137 (731)
T PRK07560 58 LDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR 137 (731)
T ss_pred cCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH
Confidence 69999999999999999999988 57999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEccccee----EeecCCCCCceEeecCch
Q psy12559 77 YDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA----IYFEGPLGDNLRIEEIPA 152 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~----~~~~~~~g~~~~~~~~~~ 152 (610)
.++|+|+||||||+.+++++...+.++.+++... ..+.++++.+.+.. |.++...|+....+.
T Consensus 138 ~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa--- 204 (731)
T PRK07560 138 ERVKPVLFINKVDRLIKELKLTPQEMQQRLLKII----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSA--- 204 (731)
T ss_pred cCCCeEEEEECchhhcccccCCHHHHHHHHHHHH----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeec---
Confidence 9999999999999998887666666666554210 00001111111110 111111111100000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHh--hhcCceeEEEeccccCCccHHHHHHHHHHhCC
Q psy12559 153 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS--TLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 230 (610)
Q Consensus 153 ~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~--~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lP 230 (610)
........+.+.+. ....+++.+.+... -....++|++ +.|||+|++++|
T Consensus 205 -------------~~~~~~~~~~~~~~-----~~~~~~l~e~~~~~~~~~l~~~~Pv~----------~~Lld~I~~~lP 256 (731)
T PRK07560 205 -------------LYNWAISVPMMQKT-----GIKFKDIIDYYEKGKQKELAEKAPLH----------EVVLDMVVKHLP 256 (731)
T ss_pred -------------ccccceeHHHHHHh-----CCCHHHHHHHHhcCCHHHHHhhccch----------hHHHHHHHHhCC
Confidence 00001111111111 11112222211000 0001235552 579999999999
Q ss_pred CCCCcccccccc------CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEe
Q psy12559 231 NPGEVTNYAIEN------GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRV 303 (610)
Q Consensus 231 sp~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v 303 (610)
+|.+++..+.+. .++..+...+|+ +++|++++|||+.++++ |+++|+|||||+|++||+|++.+++.++++
T Consensus 257 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v 334 (731)
T PRK07560 257 NPIEAQKYRIPKIWKGDLNSEVGKAMLNCD--PNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRV 334 (731)
T ss_pred ChhhhhhhcccccccCCCCccccceeeccC--CCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEe
Confidence 998765433222 111224567788 89999999999999998 999999999999999999999999888999
Q ss_pred ceEEEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccc-cCCCceEEEEEEeCCCcCHHHHHHHHHHH
Q psy12559 304 SRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESI-YVADPVVSMSIKAVNNKDRDNFSKAVQRF 381 (610)
Q Consensus 304 ~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~-~~~~Pv~~~aiep~~~~d~~kL~~~L~~L 381 (610)
++|+.++|++..+++++.|||||++.|+ ++.+||||+ +......+.++ .+|+|+++++|+|.+++|.+||.++|++|
T Consensus 335 ~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~-~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L 413 (731)
T PRK07560 335 QQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVV-SVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQL 413 (731)
T ss_pred heehhhhcCCCceeeeECCCCEEEEEcccccccCCEEe-CCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 788999999 55555667775 48999999999999999999999999999
Q ss_pred HhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccce-eeeeeeeccCCCCccEEE
Q psy12559 382 TKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRV 460 (610)
Q Consensus 382 ~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v 460 (610)
++|||+|++..|++|||++|+||||||||++++||+++||+++++++|+|+|||||.++++ ..++ ++ ++|++|
T Consensus 414 ~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v 487 (731)
T PRK07560 414 AKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRF 487 (731)
T ss_pred HhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEE----CC--CCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999874 3322 32 458999
Q ss_pred EEEEEeCCCCC-----------------------------------------CCCcEEEeccccCCCCcchHHHHHHHHH
Q psy12559 461 IGTLEPLPPSA-----------------------------------------NTKLEFIDETVGTNVPKPFLPAIIKGFK 499 (610)
Q Consensus 461 ~~~~ePl~~~~-----------------------------------------~~~~~f~~~~~g~~~~~~~~~av~~g~~ 499 (610)
+++++|++++. +++|.|+++++|+.+|++|++||++||+
T Consensus 488 ~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~ 567 (731)
T PRK07560 488 YISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFR 567 (731)
T ss_pred EEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHH
Confidence 99999997531 1379999999999999999999999999
Q ss_pred HHHHcCCccCCceeeeEEEEecCccc--CCCCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEe
Q psy12559 500 QMCEKGCLSGSRVAGVRMVLKDGDNH--MVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYD 577 (610)
Q Consensus 500 ~a~~~Gpl~g~pv~~v~v~l~~~~~h--~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d 577 (610)
||+++||||||||+||+|+|+|+++| ..++++++|+.|++.|++.+..++.+ .++||++.+++.+|+++++.++.|
T Consensus 568 ~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p--~LlEPi~~veI~~p~~~~g~v~~~ 645 (731)
T PRK07560 568 EAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKP--TLLEPIQKVDINVPQDYMGAVTRE 645 (731)
T ss_pred HHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCC--EEeecEEEEEEEecHHHhhHHHHH
Confidence 99999999999999999999999999 56788999999999999999999986 799999999999999999999999
Q ss_pred CCCCceEEEeccH
Q psy12559 578 PESKETLVSGMGE 590 (610)
Q Consensus 578 ~~t~~~~I~gmge 590 (610)
+++||+.|.+|..
T Consensus 646 L~~rrg~i~~~~~ 658 (731)
T PRK07560 646 IQGRRGKILDMEQ 658 (731)
T ss_pred HHhcCCeeeeeec
Confidence 9999999999853
No 13
>KOG0469|consensus
Probab=100.00 E-value=1.3e-84 Score=658.77 Aligned_cols=565 Identities=25% Similarity=0.346 Sum_probs=452.2
Q ss_pred CCChHHHHHhcceeecceeEEEe----------------cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc
Q psy12559 1 MDSMELERQRGITIQSAATYTLW----------------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 64 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~----------------~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~ 64 (610)
||++++||||||||+|+++++.+ ++..|||||+|||+||++||.+|||+.|||++|||+++||+
T Consensus 57 ~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC 136 (842)
T KOG0469|consen 57 TDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC 136 (842)
T ss_pred cccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE
Confidence 79999999999999999999975 36899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCeEEEEecccCC----CCCHHHHHHHHHHHhC-CCeeEee-----------cc----ccCCCCee
Q psy12559 65 SQTLTVNRQMKRYDVPCIAFINKLDRL----GADPYRVINQMRQKVG-HNAAFLQ-----------IP----IGLGSETK 124 (610)
Q Consensus 65 ~qt~~v~~~~~~~~ip~i~~iNKiDr~----~~~~~~~~~~i~~~l~-~~~~~~~-----------~p----~~~~~~~~ 124 (610)
.||+++++||..++|.+++|+|||||. +.+.++.++.++++.. .|+..-+ .| ++++++++
T Consensus 137 VQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLh 216 (842)
T KOG0469|consen 137 VQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLH 216 (842)
T ss_pred echHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccc
Confidence 999999999999999999999999996 5677888888887764 3443221 12 45789999
Q ss_pred EEEEcccceeEeecCCCCC--------------------ceE-------eecCchhHHHHHHHHHHHHHHHHhcCCHHHH
Q psy12559 125 GIIDLIQRKAIYFEGPLGD--------------------NLR-------IEEIPADLKKEAESKRQELIEHVAEGDEILG 177 (610)
Q Consensus 125 g~~d~~~~~~~~~~~~~g~--------------------~~~-------~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~ 177 (610)
||.+.+++.+-.|..++|- .+. -.++...|..++.....++.+++.+...+-.
T Consensus 217 GWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei 296 (842)
T KOG0469|consen 217 GWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEI 296 (842)
T ss_pred hhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHH
Confidence 9999998776544332211 111 1123334555555566666666665544322
Q ss_pred HhhhcCCC--CCHHH--H-HHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc------Cccc
Q psy12559 178 EMFLEEKS--ISEDD--I-KKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN------GQED 246 (610)
Q Consensus 178 e~~l~~~~--~~~~~--l-~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~------~~~~ 246 (610)
..|++.-+ +..++ + -++|-+ ..+++|.|- -+.||++|.-+||||..++++|... +++.
T Consensus 297 ~~llekl~v~lk~~~kd~eGK~LlK-~vMr~wLPA----------adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~ 365 (842)
T KOG0469|consen 297 ATLLEKLEVTLKGDEKDLEGKALLK-VVMRKWLPA----------ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEA 365 (842)
T ss_pred HHHHHHhcceeccccccccchHHHH-HHHHHhcch----------HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHH
Confidence 22322111 11111 0 011111 235578886 3789999999999999999887655 2333
Q ss_pred ceeecCCCCCCCCCeEEEEEEEEeeCC-cc-EEEEEEEeceecCCCEEEecCC----CeEE-----EeceEEEeccCccc
Q psy12559 247 KKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCYQGKLRKGEMIYNVRT----DKKV-----RVSRLVRLHSNEME 315 (610)
Q Consensus 247 ~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-i~~~RV~sG~l~~g~~v~~~~~----~~~~-----~v~~i~~~~g~~~~ 315 (610)
...+.+|| +++|+++||+|+..... |+ ++|||||||++.+|+++++... |+++ .|.+...|+|+..+
T Consensus 366 a~aik~CD--~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~ve 443 (842)
T KOG0469|consen 366 AVAIKNCD--PKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVE 443 (842)
T ss_pred hhHhhccC--CCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhccccc
Confidence 45678999 99999999999998755 55 9999999999999999997544 3433 46677789999999
Q ss_pred ccCcccCCCEEEEcCCC---cccCceEecCCCCccccccccCC-CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEE
Q psy12559 316 DVEEVLAGDIFALFGVD---CASGDTFVTDKNNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFF 391 (610)
Q Consensus 316 ~v~~a~aGdiv~i~gl~---~~~Gdtl~~~~~~~~~~~~~~~~-~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~ 391 (610)
+++.++||+|+++.|+| .++| ||+ ..+....+..++++ +||++++||++++.|++||.++|++|+++||...+.
T Consensus 444 pied~PaGNIiGlvGvDqfLvKtG-TiT-t~e~AHNmrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~ 521 (842)
T KOG0469|consen 444 PIEDCPAGNIIGLVGVDQFLVKTG-TIT-TSEAAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCI 521 (842)
T ss_pred ccccCCCCcEEEEeehhHhhhccC-cee-ehhhhccceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEE
Confidence 99999999999999993 3556 888 45556666667664 899999999999999999999999999999999999
Q ss_pred EcCCCCcEEEEEechhhHHHHHHHHhhhc-ccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCC-
Q psy12559 392 YDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP- 469 (610)
Q Consensus 392 ~d~etge~il~g~GelhLei~~~~L~~~~-~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~- 469 (610)
+ +|+||++|.|.||||||||+++|++.| ++.++.|+|.|+||||+...+...+..|..+ .+.+++++++|++.
T Consensus 522 ~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtvs~~ss~~~lsKSpN----KHNRi~mtaeP~~~~ 596 (842)
T KOG0469|consen 522 I-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVSEESSQTCLSKSPN----KHNRIYMTAEPMDDG 596 (842)
T ss_pred e-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecccccccchhhhccCCc----ccceeEEecccCCch
Confidence 8 589999999999999999999999999 8999999999999999999988777766543 45788999999852
Q ss_pred ------------------------------------------CCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCc
Q psy12559 470 ------------------------------------------SANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCL 507 (610)
Q Consensus 470 ------------------------------------------~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl 507 (610)
+..+.|..++.+.|.++.+++.++|..||+||.++|||
T Consensus 597 l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l 676 (842)
T KOG0469|consen 597 LSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPL 676 (842)
T ss_pred hhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 12244677777777788899999999999999999999
Q ss_pred cCCceeeeEEEEecCcccCC--CCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEE
Q psy12559 508 SGSRVAGVRMVLKDGDNHMV--DSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLV 585 (610)
Q Consensus 508 ~g~pv~~v~v~l~~~~~h~~--ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I 585 (610)
+|+.+++|+|.++|...|.- +.........+++++....+.|.| .+.||+..+++-+||+.++.+++-++.+|+++
T Consensus 677 ~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P--~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v 754 (842)
T KOG0469|consen 677 FGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGP--ILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHV 754 (842)
T ss_pred ccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCc--eecCceEEEEEeCchhhhchhhheeeccccce
Confidence 99999999999999999963 344455566677777777778887 59999999999999999999999999999976
Q ss_pred Ee
Q psy12559 586 SG 587 (610)
Q Consensus 586 ~g 587 (610)
.-
T Consensus 755 ~~ 756 (842)
T KOG0469|consen 755 FE 756 (842)
T ss_pred ec
Confidence 53
No 14
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.3e-77 Score=651.25 Aligned_cols=404 Identities=29% Similarity=0.496 Sum_probs=370.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++|||||.++..++.|+++++||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++...++|
T Consensus 54 ~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP 133 (526)
T PRK00741 54 SDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP 133 (526)
T ss_pred CCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||||+.++++.+++++|++.|+..+.|++||++.+..|.|++|+++++++.|....|..
T Consensus 134 iiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~---------------- 197 (526)
T PRK00741 134 IFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHT---------------- 197 (526)
T ss_pred EEEEEECCcccccCHHHHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCc----------------
Confidence 9999999999999999999999999999999999999999999999999999999996433321
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHH-----------HHhhhcCceeEEEeccccCCccHHHHHHHHHHhC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAI-----------RRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 229 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l-----------~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~l 229 (610)
..+.|.+++.||++|++|++++.+ +++...+ ++++..+.++|||||||++|.||++|||+|++++
T Consensus 198 --~~~~e~~~~~dd~lle~~l~~~~~--~~l~~~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~ 273 (526)
T PRK00741 198 --IQEVEIIKGLDNPELDELLGEDLA--EQLREELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWA 273 (526)
T ss_pred --ceeeeeccCCCHHHHHHHhcccHH--HHHHHHHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHC
Confidence 134568899999999999998755 6666666 8899999999999999999999999999999999
Q ss_pred CCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEe---eCC-ccEEEEEEEeceecCCCEEEecCCCeEEEece
Q psy12559 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSR 305 (610)
Q Consensus 230 Psp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~---~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~ 305 (610)
|+|.++... .....+ .+.+|+|+|||+.+ +++ |+++|+|||||+|++|++|+|.++++++++++
T Consensus 274 P~P~~~~~~---------~~~~~~---~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~ 341 (526)
T PRK00741 274 PAPQPRQTD---------EREVEP---TEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISN 341 (526)
T ss_pred CCCCccccc---------ceeecC---CCCceEEEEEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecc
Confidence 999765321 011222 35679999999995 356 99999999999999999999999999999999
Q ss_pred EEEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhc
Q psy12559 306 LVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKE 384 (610)
Q Consensus 306 i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~e 384 (610)
++.++|.++.++++|.||||+++.|+ ++++||||+ +.. +..++++.+|+|+++++|+|++++|.+||..||++|++|
T Consensus 342 ~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~-~~~-~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eE 419 (526)
T PRK00741 342 ALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFT-QGE-KLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEE 419 (526)
T ss_pred eEEEecCCceECceeCCCCEEEEECCCCCccCCCcc-CCC-ccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999 899999999 444 677888999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecc
Q psy12559 385 DPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQ 439 (610)
Q Consensus 385 Dpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~ 439 (610)
|| +++..|++|||++|+|||+|||||+++||+++||+++.+++|.|++---|..
T Consensus 420 D~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 420 GA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIYEPVGVATARWVEC 473 (526)
T ss_pred CC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEEecCCccEEEEEeC
Confidence 95 9999999999999999999999999999999999999999999999888753
No 15
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.8e-73 Score=619.50 Aligned_cols=403 Identities=29% Similarity=0.472 Sum_probs=357.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++|||||.++..++.|+++++||||||||.||..++.++++.+|++|+|||+..|++.||+.+|+.++..++|
T Consensus 55 ~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P 134 (527)
T TIGR00503 55 SDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP 134 (527)
T ss_pred CCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEee------cCch--
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIE------EIPA-- 152 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~------~~~~-- 152 (610)
+|+|+||||+.+++++++++.|++.++..+.++++|++.+..|.|++|++.++++.|....|...... +.|.
T Consensus 135 iivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e 214 (527)
T TIGR00503 135 IFTFMNKLDRDIRDPLELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALD 214 (527)
T ss_pred EEEEEECccccCCCHHHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999965444433222 1221
Q ss_pred h--HHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCC
Q psy12559 153 D--LKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 230 (610)
Q Consensus 153 ~--~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lP 230 (610)
. ..+.+.++|+.+ |.+++.++++ + ++++..+.++|||||||++|.||+.|||+|++++|
T Consensus 215 ~~~~~~~~~~~~~~l-e~~~~~~~~~----------~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P 275 (527)
T TIGR00503 215 SAVGSDLAQQLRDEL-ELVEGASNEF----------D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAP 275 (527)
T ss_pred hhhhHHHHHHHHHHH-HHHhhhcccc----------C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCC
Confidence 1 123345667776 7777766532 2 24567789999999999999999999999999999
Q ss_pred CCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEe--e-CC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 231 NPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G-KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 231 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~-~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
+|.++... ...+.+ .++||+|+|||+.+ | ++ |+++|+|||||+|++|++|+|.++|++++++++
T Consensus 276 sP~~~~~~---------~~~~~~---~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~ 343 (527)
T TIGR00503 276 KPEARQSD---------TRTVEP---TEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDA 343 (527)
T ss_pred CCccccCC---------ceecCC---CCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecch
Confidence 99765321 112222 46779999999998 7 46 999999999999999999999999999999999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKED 385 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eD 385 (610)
+.++|.++.++++|.||||+++.|+ ++++||||| + ..+..++++.+|+|+++++|+|++++|.+||..||++|++||
T Consensus 344 ~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~-~-~~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED 421 (527)
T TIGR00503 344 LTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFT-Q-GEKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEG 421 (527)
T ss_pred hhhhcCCceEcceeCCCCEEEEECCCCcccCCEec-C-CCceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999 899999999 4 346777888999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEee
Q psy12559 386 PTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETL 437 (610)
Q Consensus 386 psl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti 437 (610)
| +++.+|++|+|++|+|||+|||||+++||+++||+++.+++|.|+.-==|
T Consensus 422 ~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~~~~~~v~~~rw~ 472 (527)
T TIGR00503 422 A-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEARYEPVNVATARWV 472 (527)
T ss_pred C-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEEEeCCCceEEEEE
Confidence 8 99999999999999999999999999999999999999999999865333
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=4.2e-65 Score=562.80 Aligned_cols=327 Identities=30% Similarity=0.471 Sum_probs=297.3
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||+|||||.++..++.|++++|||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|
T Consensus 39 ~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip 118 (594)
T TIGR01394 39 MDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK 118 (594)
T ss_pred ccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+|+||||+.+++++++++++++.|...
T Consensus 119 ~IVviNKiD~~~a~~~~v~~ei~~l~~~~--------------------------------------------------- 147 (594)
T TIGR01394 119 PIVVINKIDRPSARPDEVVDEVFDLFAEL--------------------------------------------------- 147 (594)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHhh---------------------------------------------------
Confidence 99999999999888888888887765310
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc----------cHHHHHHHHHHhCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLP 230 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~----------gv~~Lld~i~~~lP 230 (610)
.. +.+ ...+|++++||++|. |+.+|+++|++++|
T Consensus 148 ---------g~---------------~~e------------~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 148 ---------GA---------------DDE------------QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred ---------cc---------------ccc------------cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 00 000 012689999999995 89999999999999
Q ss_pred CCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC---eEEEeceE
Q psy12559 231 NPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRL 306 (610)
Q Consensus 231 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~---~~~~v~~i 306 (610)
+|... +++||.++||+++++++ |+++++||+||+|++||.|++.+.+ ..++|++|
T Consensus 192 ~P~~~---------------------~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i 250 (594)
T TIGR01394 192 APKGD---------------------LDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKL 250 (594)
T ss_pred CCCCC---------------------CCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEE
Confidence 99531 67899999999999999 9999999999999999999998763 25799999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCC---cCHHH------HHH
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN---KDRDN------FSK 376 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~---~d~~k------L~~ 376 (610)
+.+.|.++.++++|.|||||+++|+ ++.+||||| +...+..++++.+++|+++++++|++. ++..| |.+
T Consensus 251 ~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~-~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~ 329 (594)
T TIGR01394 251 LGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIA-DPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRD 329 (594)
T ss_pred EEccCCCceECCEECCCCEEEEeCCcccCCCCEEe-CCCccccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHH
Confidence 9999999999999999999999999 899999999 677788889999999999999999865 44444 999
Q ss_pred HHHHHHhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeec
Q psy12559 377 AVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLV 438 (610)
Q Consensus 377 ~L~~L~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~ 438 (610)
+|.++.++||+|+++.++++++++|+|+|||||+|++++|+|+ |+++.+++|+|+||| |.
T Consensus 330 ~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yre-i~ 389 (594)
T TIGR01394 330 RLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-GFELQVGRPQVIYKE-ID 389 (594)
T ss_pred HHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-CceEEEeCCEEEEEe-CC
Confidence 9999999999999999999999999999999999999999999 999999999999999 63
No 17
>KOG0468|consensus
Probab=100.00 E-value=8.6e-65 Score=528.96 Aligned_cols=567 Identities=20% Similarity=0.244 Sum_probs=418.6
Q ss_pred CCChHHHHHhcceeecceeEEEe-----cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~-----~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|.+..|||||+||++..+++.. +.+.+|++|||||+||+.|+.++|+.+|++++|||+.+||.-+|+++++++-
T Consensus 167 tD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai 246 (971)
T KOG0468|consen 167 TDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI 246 (971)
T ss_pred cccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH
Confidence 68999999999999999999976 4689999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecccCC----CCCHHHHHHHHHHHhCC-C---------eeEeecc----ccCCCCeeEEEEcccceeE--
Q psy12559 76 RYDVPCIAFINKLDRL----GADPYRVINQMRQKVGH-N---------AAFLQIP----IGLGSETKGIIDLIQRKAI-- 135 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~----~~~~~~~~~~i~~~l~~-~---------~~~~~~p----~~~~~~~~g~~d~~~~~~~-- 135 (610)
+.++|++++||||||+ +..+.+++-+++...+. | -.++--| +.+.+..-||-+.+...+-
T Consensus 247 q~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y 326 (971)
T KOG0468|consen 247 QNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLY 326 (971)
T ss_pred hccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHH
Confidence 9999999999999997 34455666555554421 1 1111122 3345666677776654443
Q ss_pred --------------------eecCCCCCceEee----cCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhc--CCCCCHH
Q psy12559 136 --------------------YFEGPLGDNLRIE----EIPADLKKEAESKRQELIEHVAEGDEILGEMFLE--EKSISED 189 (610)
Q Consensus 136 --------------------~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--~~~~~~~ 189 (610)
||.++. ..|... ..+..|.+++.+.-+++.+++....+.-+...+. +..++++
T Consensus 327 ~~~~~~~~~d~Fa~RLWGdvYf~~kt-rkF~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e 405 (971)
T KOG0468|consen 327 ADAHGHIDVDDFAKRLWGDVYFHSKT-RKFVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKE 405 (971)
T ss_pred HHhcCCcchhhhhhhhhccccccccc-cccccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHH
Confidence 332211 112222 2345788999999999988775444444444443 2456676
Q ss_pred HHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc--Cc----ccceeecCCCCCCCCCeEE
Q psy12559 190 DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN--GQ----EDKKVVLNPSRDGKHPFIA 263 (610)
Q Consensus 190 ~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~--~~----~~~~~~~~~~~~~~~p~~~ 263 (610)
++.-..+-.++ .+..-|+|.. ..+.|++++++|||.+.......+ .+ ..-..++.|+ +++|++.
T Consensus 406 ~~k~n~rPll~--lvc~~ffg~~------sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~--~~~pLm~ 475 (971)
T KOG0468|consen 406 AYKLNPRPLLR--LVCKSFFGIE------SGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECN--ASGPLMV 475 (971)
T ss_pred HhhcCccHHHH--HHHHHhccch------hhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhC--CCCceeE
Confidence 65432221110 0011133322 348899999999998855443322 12 2235678899 9999999
Q ss_pred EEEEEEeeCC--ccEEEEEEEeceecCCCEEEecCCC---------eEEEeceEEEeccCcccccCcccCCCEEEEcCCC
Q psy12559 264 LAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVD 332 (610)
Q Consensus 264 ~V~k~~~~~~--G~i~~~RV~sG~l~~g~~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl~ 332 (610)
.+.|++.... -..+|+||+||+++.|+.|.+...+ ....|++++...+++..+|.+|+||+++.|.|++
T Consensus 476 h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gid 555 (971)
T KOG0468|consen 476 HVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVD 555 (971)
T ss_pred EeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccc
Confidence 9999998655 5689999999999999999876543 2357889999999999999999999999999993
Q ss_pred --cccCceEecCC--CCccccccccC-CCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcEEEEEechh
Q psy12559 333 --CASGDTFVTDK--NNSISLESIYV-ADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGEL 407 (610)
Q Consensus 333 --~~~Gdtl~~~~--~~~~~~~~~~~-~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~il~g~Gel 407 (610)
.-...|+++.. .....++++.+ +.||++++++|.++++++||.+||.+.++.+|.+.... +|+||++|.|.|||
T Consensus 556 q~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGEl 634 (971)
T KOG0468|consen 556 QSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGEL 634 (971)
T ss_pred hHHhhhhheeccccccceeeccchhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchh
Confidence 33455777322 23456677654 78999999999999999999999999999999998887 79999999999999
Q ss_pred hHHHHHHHHhhhc-ccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCC-----------------
Q psy12559 408 HLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP----------------- 469 (610)
Q Consensus 408 hLei~~~~L~~~~-~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~----------------- 469 (610)
+|+|++++|+..| .+++++++|.|.|.||+..+++..|-.... +...++++..||++.
T Consensus 635 YmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfaetp----nkknkItmiaEPlek~l~eDiEng~v~I~wn~ 710 (971)
T KOG0468|consen 635 YMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAETP----NKKNKITMIAEPLEKGLAEDIENGVVVIDWNR 710 (971)
T ss_pred hHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhccCC----CccCceeeeechhhhhhhHHhhcCeEEeccch
Confidence 9999999999999 799999999999999999887765543322 233678888899742
Q ss_pred --------------------------CCCCCcEEEeccccCCCCc----chHHHHHHHHHHHHHcCCccCCceeeeEEEE
Q psy12559 470 --------------------------SANTKLEFIDETVGTNVPK----PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVL 519 (610)
Q Consensus 470 --------------------------~~~~~~~f~~~~~g~~~~~----~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l 519 (610)
|..++|.+.|++....+++ .+.++|.+||+|++++||||++|+++|+++|
T Consensus 711 krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKl 790 (971)
T KOG0468|consen 711 KRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKL 790 (971)
T ss_pred hhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEE
Confidence 1223466666665554444 4677899999999999999999999999999
Q ss_pred ecCcccCC--CCchhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEE
Q psy12559 520 KDGDNHMV--DSNEISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLV 585 (610)
Q Consensus 520 ~~~~~h~~--ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I 585 (610)
.|+..-+. +.........+|++...+.+.|.| .++||+.-+++.++.|..--++.-+..|||+|
T Consensus 791 ld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtP--rLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV 856 (971)
T KOG0468|consen 791 LDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATP--RLMEPVYLVEITAPADCVPAVYTVLSRRRGHV 856 (971)
T ss_pred eecccCccccccCCCccchHHHHHHHHHHHhhch--hhcCceEEEEEecccchHHHHHHHHHhhcCce
Confidence 99877542 333333445555555555555665 47777777777777766554444444444433
No 18
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.6e-64 Score=552.65 Aligned_cols=326 Identities=31% Similarity=0.465 Sum_probs=298.3
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++|++|||||.++..++.|++++|||||||||.||..++.++++.+|++|+|+|+.+|++.||+.+|+.+...++|
T Consensus 43 ~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip 122 (607)
T PRK10218 43 MDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK 122 (607)
T ss_pred eccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
.|+|+||||+.+++++++++++++.|..- +
T Consensus 123 ~IVviNKiD~~~a~~~~vl~ei~~l~~~l--------~------------------------------------------ 152 (607)
T PRK10218 123 PIVVINKVDRPGARPDWVVDQVFDLFVNL--------D------------------------------------------ 152 (607)
T ss_pred EEEEEECcCCCCCchhHHHHHHHHHHhcc--------C------------------------------------------
Confidence 99999999999999999999888876310 0
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc----------cHHHHHHHHHHhCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYLP 230 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~----------gv~~Lld~i~~~lP 230 (610)
... ...-+|++++||++|. |+.+||++|++++|
T Consensus 153 -------------------------~~~------------~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 153 -------------------------ATD------------EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred -------------------------ccc------------cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 000 0012799999999998 69999999999999
Q ss_pred CCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC-Ce--EEEeceE
Q psy12559 231 NPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT-DK--KVRVSRL 306 (610)
Q Consensus 231 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~-~~--~~~v~~i 306 (610)
+|... +++||.++|||++++++ |+++++||+||+|++||.|++.+. ++ .++|++|
T Consensus 196 ~P~~~---------------------~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l 254 (607)
T PRK10218 196 APDVD---------------------LDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKV 254 (607)
T ss_pred CCCCC---------------------CCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEE
Confidence 99521 67899999999999999 999999999999999999999876 44 6889999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCC---CcCHHHHHH---HHH
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVN---NKDRDNFSK---AVQ 379 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~---~~d~~kL~~---~L~ 379 (610)
+.+.|.++.++++|.|||||+++|+ ++.+||||| +...+..++.+++++|++++++.|++ .+++.|+.. +++
T Consensus 255 ~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~-~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~ 333 (607)
T PRK10218 255 LGHLGLERIETDLAEAGDIVAITGLGELNISDTVC-DTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILD 333 (607)
T ss_pred EEEecCCceECCEEcCCCEEEEECccccccCcEEe-cCCCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHH
Confidence 9999999999999999999999999 899999999 67777888899999999999999999 889999865 666
Q ss_pred HHHh---cCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEe
Q psy12559 380 RFTK---EDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKET 436 (610)
Q Consensus 380 ~L~~---eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEt 436 (610)
+|.+ +||+|+++.+++|++++|+|+|||||+|++++|+|+ |+++.+++|+|+||||
T Consensus 334 rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 334 RLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred HHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-CceEEEeCCEEEEEEE
Confidence 6666 899999999999999999999999999999999999 9999999999999999
No 19
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=9.4e-64 Score=554.21 Aligned_cols=376 Identities=29% Similarity=0.448 Sum_probs=330.3
Q ss_pred CCChHHHHHhcceeecceeEEEec-----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|++++||+|||||+++.+++.|+ ++.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+.
T Consensus 44 lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~ 123 (600)
T PRK05433 44 LDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL 123 (600)
T ss_pred ccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999999999999999996 689999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
..++|+|+|+||||+.+++++++.+++++.++.+
T Consensus 124 ~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~---------------------------------------------- 157 (600)
T PRK05433 124 ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID---------------------------------------------- 157 (600)
T ss_pred HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC----------------------------------------------
Confidence 8999999999999998777666655555444311
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCc
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 235 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~ 235 (610)
..+++++||++|.|++.|+++|.+.+|+|...
T Consensus 158 ------------------------------------------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~ 189 (600)
T PRK05433 158 ------------------------------------------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGD 189 (600)
T ss_pred ------------------------------------------------cceEEEEecCCCCCHHHHHHHHHHhCccccCC
Confidence 01367789999999999999999999999632
Q ss_pred cccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
+++|+.++||+++.+++ |.++++||++|+|++||+|++.+++..++|.+|+.+.+ +.
T Consensus 190 ---------------------~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~ 247 (600)
T PRK05433 190 ---------------------PDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KM 247 (600)
T ss_pred ---------------------CCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-Cc
Confidence 67899999999999998 99999999999999999999999999999999996655 88
Q ss_pred cccCcccCCCEEEEc-CC----CcccCceEecCCCCc--cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCe
Q psy12559 315 EDVEEVLAGDIFALF-GV----DCASGDTFVTDKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 387 (610)
Q Consensus 315 ~~v~~a~aGdiv~i~-gl----~~~~Gdtl~~~~~~~--~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDps 387 (610)
.+++++.||||+.+. |+ ++++||||+ +..++ ..++++..|+|+++++++|.+.+|.++|.++|.+|+.||||
T Consensus 248 ~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~-~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~s 326 (600)
T PRK05433 248 VPVDELSAGEVGYIIAGIKDVRDARVGDTIT-LAKNPAEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDAS 326 (600)
T ss_pred eECcEEcCCCEEEEecccccccccCCCCEEE-CCCCccccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCe
Confidence 899999999998874 44 688999999 55544 47888899999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcEEEEE-----echhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEE
Q psy12559 388 FHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIG 462 (610)
Q Consensus 388 l~~~~d~etge~il~g-----~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~ 462 (610)
|+++ ++|++.+++| ||+|||||+++||+++||+++.+++|+|+|||||++.
T Consensus 327 l~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g---------------------- 382 (600)
T PRK05433 327 LTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDG---------------------- 382 (600)
T ss_pred EEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCC----------------------
Confidence 9986 6899999999 9999999999999999999999999999999999751
Q ss_pred EEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcc
Q psy12559 463 TLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPV 542 (610)
Q Consensus 463 ~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~ 542 (610)
..+.|.| | .||| ||++++
T Consensus 383 ----------~~~~~~~--------------------------p-~~~p----------------ds~~~~--------- 400 (600)
T PRK05433 383 ----------EVIEVDN--------------------------P-SKLP----------------DPGKIE--------- 400 (600)
T ss_pred ----------cEEEEEC--------------------------c-ccCC----------------Cccccc---------
Confidence 0122332 1 1333 455442
Q ss_pred eeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 543 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 543 ~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
.++||++.+++.+|++++++++.+.++||+.+.+|..
T Consensus 401 -----------~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~ 437 (600)
T PRK05433 401 -----------EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEY 437 (600)
T ss_pred -----------eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEe
Confidence 5899999999999999999999999999999999875
No 20
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-63 Score=499.98 Aligned_cols=404 Identities=28% Similarity=0.500 Sum_probs=336.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|+|+.||+|||||.||+.+|.|+++.|||+|||||.||+..++|.|..+|.||+||||.+|+++||+++++-|+.+++|
T Consensus 56 SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP 135 (528)
T COG4108 56 SDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP 135 (528)
T ss_pred cHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCC-CceE---eecCc-hhHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLG-DNLR---IEEIP-ADLK 155 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g-~~~~---~~~~~-~~~~ 155 (610)
++-|||||||.+-++-+++++|.+.|+..+.|++|||+.+..|.|+.|+.+.....|.+..+ .... ...+. +++.
T Consensus 136 I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~ 215 (528)
T COG4108 136 IFTFINKLDREGRDPLELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELD 215 (528)
T ss_pred eEEEeeccccccCChHHHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999988866432 1111 11110 1111
Q ss_pred HHH-HHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCC
Q psy12559 156 KEA-ESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGE 234 (610)
Q Consensus 156 ~~~-~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~ 234 (610)
... ...++.+.|.+ +|++. .+..++. .+++.+...|||||||++|.||+.+|++++++.|+|..
T Consensus 216 ~~l~~~~~~~~~ee~-----EL~~~--a~~~Fd~--------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~ 280 (528)
T COG4108 216 ALLGEDLAEQLREEL-----ELVQG--AGNEFDL--------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRA 280 (528)
T ss_pred hhhchHHHHHHHHHH-----HHHHh--hccccCH--------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCc
Confidence 111 01112222111 00000 0011111 23456788999999999999999999999999999987
Q ss_pred ccccccccCcccceeecCCCCCCCCCeEEEEEEEEee--CC--ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEec
Q psy12559 235 VTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG--KF--GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH 310 (610)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~--~~--G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~ 310 (610)
++.. .-++.+ .+..|.+||||+... |. -++||.||+||.+..|+++..+++|+..+++.-..++
T Consensus 281 ~~a~---------~~~v~p---~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~ 348 (528)
T COG4108 281 RQAD---------TREVEP---TEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFM 348 (528)
T ss_pred ccCC---------cCcccC---CCCccceEEEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhh
Confidence 6531 112222 244599999999975 43 7899999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeE
Q psy12559 311 SNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 389 (610)
Q Consensus 311 g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~ 389 (610)
+.+++.+++|.||||++|.+- ..+.|||++ . .....+.++....|=++..|..+++...++|.++|++|++|-..-
T Consensus 349 A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t-~-Ge~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ- 425 (528)
T COG4108 349 AQDRETVEEAYAGDIIGLHNHGTIQIGDTFT-E-GEKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQ- 425 (528)
T ss_pred hhhhhhhhhccCCCeEeccCCCceeecceee-c-CceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeE-
Confidence 999999999999999999877 679999999 3 367788888877899999999999999999999999999998554
Q ss_pred EEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEE
Q psy12559 390 FFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFK 434 (610)
Q Consensus 390 ~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yr 434 (610)
+.....+.+.++...|.||+||+.+||+++||+++.+.+..++.-
T Consensus 426 ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~~~~a 470 (528)
T COG4108 426 VFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAVFEPVNFSTA 470 (528)
T ss_pred EEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEEEeeccceEE
Confidence 555567899999999999999999999999999999987655543
No 21
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=3.2e-62 Score=541.55 Aligned_cols=376 Identities=28% Similarity=0.461 Sum_probs=329.1
Q ss_pred CCChHHHHHhcceeecceeEEEec--C---eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK--D---HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~--~---~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|++++|++|||||+++.+++.|+ + +++||||||||.||..++.++++.+|++|+|+|+.+|++.||...|..+.
T Consensus 40 ~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~ 119 (595)
T TIGR01393 40 LDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL 119 (595)
T ss_pred cCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH
Confidence 589999999999999999999985 3 78999999999999999999999999999999999999999999999888
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
+.++|+|+|+||+|+..++.++..+++++.++..
T Consensus 120 ~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---------------------------------------------- 153 (595)
T TIGR01393 120 ENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---------------------------------------------- 153 (595)
T ss_pred HcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----------------------------------------------
Confidence 8999999999999998766555555554443311
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCc
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 235 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~ 235 (610)
..+++++||++|.|++.|+++|.+++|+|...
T Consensus 154 ------------------------------------------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~ 185 (595)
T TIGR01393 154 ------------------------------------------------ASEAILASAKTGIGIEEILEAIVKRVPPPKGD 185 (595)
T ss_pred ------------------------------------------------cceEEEeeccCCCCHHHHHHHHHHhCCCCCCC
Confidence 11367889999999999999999999999632
Q ss_pred cccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
+++|+.++||++++|++ |+++++||++|+|++||+|++.++++.++|.+|+.+.+..
T Consensus 186 ---------------------~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~- 243 (595)
T TIGR01393 186 ---------------------PDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL- 243 (595)
T ss_pred ---------------------CCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-
Confidence 67899999999999999 9999999999999999999999999999999999776665
Q ss_pred cccCcccCCCEEEEc-CC----CcccCceEecCCCCc--cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCe
Q psy12559 315 EDVEEVLAGDIFALF-GV----DCASGDTFVTDKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 387 (610)
Q Consensus 315 ~~v~~a~aGdiv~i~-gl----~~~~Gdtl~~~~~~~--~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDps 387 (610)
.+++++.||||+++. |+ ++++||||+ +..++ ..++++..|+|++++++.|.+.+|.++|.++|++|..|||+
T Consensus 244 ~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~-~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~s 322 (595)
T TIGR01393 244 TKTDELSAGEVGYIIAGIKDVSDVRVGDTIT-HVKNPAKEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDAS 322 (595)
T ss_pred eECCEEcCCCEEEEeccccccCccCCCCEEE-CCCCccccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCe
Confidence 899999999998874 44 688999999 55544 47888899999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcEEEEE-----echhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEE
Q psy12559 388 FHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIG 462 (610)
Q Consensus 388 l~~~~d~etge~il~g-----~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~ 462 (610)
|+++ ++|++.+++| ||+|||||+++||+++||+++.+++|+|+|||||++ | +
T Consensus 323 l~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yreti~~-------------g--~------ 379 (595)
T TIGR01393 323 LTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVIYRVYLTN-------------G--E------ 379 (595)
T ss_pred EEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEEEecC-------------C--c------
Confidence 9997 4899988775 999999999999999999999999999999999873 1 1
Q ss_pred EEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcc
Q psy12559 463 TLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPV 542 (610)
Q Consensus 463 ~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~ 542 (610)
++.|.| | .|||+.|.
T Consensus 380 -----------~~~~~~--------------------------p-~~~p~~~~--------------------------- 394 (595)
T TIGR01393 380 -----------VIEVDN--------------------------P-SDLPDPGK--------------------------- 394 (595)
T ss_pred -----------EEEEEC--------------------------c-ccCCCccc---------------------------
Confidence 122332 3 48888762
Q ss_pred eeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 543 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 543 ~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
. ..++||++.+++.+|++++++++.|.+.||+.+.+|..
T Consensus 395 -------~--~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~ 433 (595)
T TIGR01393 395 -------I--EHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEY 433 (595)
T ss_pred -------c--cceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEE
Confidence 0 26899999999999999999999999999999999874
No 22
>KOG0467|consensus
Probab=100.00 E-value=4e-59 Score=495.55 Aligned_cols=554 Identities=23% Similarity=0.313 Sum_probs=378.8
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||.||||++|+.++...++|.+||||+|||+||++||.+|++.+|+|+++||+++||++||..++|||+..++.
T Consensus 47 ld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~ 126 (887)
T KOG0467|consen 47 LDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK 126 (887)
T ss_pred ccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCC----CCCHHHHHHHHHHHhC-CCeeE---------------------eeccc-----cCCCCeeEEEEc
Q psy12559 81 CIAFINKLDRL----GADPYRVINQMRQKVG-HNAAF---------------------LQIPI-----GLGSETKGIIDL 129 (610)
Q Consensus 81 ~i~~iNKiDr~----~~~~~~~~~~i~~~l~-~~~~~---------------------~~~p~-----~~~~~~~g~~d~ 129 (610)
+|++||||||+ ..++.++|.++-+... .|.+. +++-+ .+.+...||++-
T Consensus 127 ~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 127 PILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFG 206 (887)
T ss_pred eEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccccc
Confidence 99999999986 5778888777665442 11111 01111 111223333332
Q ss_pred cccee---------------------EeecCCC-----C-CceEeecCc-----hhHHHHHHHHHHHHHH-HHhcCCHHH
Q psy12559 130 IQRKA---------------------IYFEGPL-----G-DNLRIEEIP-----ADLKKEAESKRQELIE-HVAEGDEIL 176 (610)
Q Consensus 130 ~~~~~---------------------~~~~~~~-----g-~~~~~~~~~-----~~~~~~~~~~~~~l~e-~~~~~dd~l 176 (610)
+.+.+ ++++++. + +..-..+++ +.+|. +.+ .+...|-+-
T Consensus 207 ~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~--------iy~~~~~~~d~~~ 278 (887)
T KOG0467|consen 207 IEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWR--------IYELALKSRDKEK 278 (887)
T ss_pred HHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhcccCcccCCCccceeehhhHHH--------HHHHHhccchHHH
Confidence 22111 1111100 0 000001111 11221 111 111222222
Q ss_pred HHhhhcC--CCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc---C-c-----c
Q psy12559 177 GEMFLEE--KSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN---G-Q-----E 245 (610)
Q Consensus 177 ~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~---~-~-----~ 245 (610)
+++.... .++.+.++...+. ..+.+|+|+ | +..+-+.+.++|+|.+.+..+... + + +
T Consensus 279 ~~ki~k~l~i~~l~r~~~~ll~--~im~~wLPl---s-------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~ 346 (887)
T KOG0467|consen 279 LEKIAKSLNIKLLPRDLRNLLD--AIMSTWLPL---S-------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPP 346 (887)
T ss_pred HHHHhhhcccccchHHHHHHHH--HHHHhhccc---c-------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChH
Confidence 3333221 2233444443332 246789998 2 445666778899998776543322 1 1 1
Q ss_pred cceeecCCCCCCCCCeEEEEEEEEeeC-----Cc-cEEEEEEEeceecCCCEEEecCC-------CeEEEeceEEEeccC
Q psy12559 246 DKKVVLNPSRDGKHPFIALAFKLEAGK-----FG-QLTYMRCYQGKLRKGEMIYNVRT-------DKKVRVSRLVRLHSN 312 (610)
Q Consensus 246 ~~~~~~~~~~~~~~p~~~~V~k~~~~~-----~G-~i~~~RV~sG~l~~g~~v~~~~~-------~~~~~v~~i~~~~g~ 312 (610)
....+..|+ +++|..+||.|+...+ .. .++++||||||++.||.++..+. -...+|.++|+++|+
T Consensus 347 ~~~~v~~~~--~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgq 424 (887)
T KOG0467|consen 347 LTKAVKSCS--KESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQ 424 (887)
T ss_pred hhhhhhcCC--CCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcc
Confidence 224456677 8999999999998763 23 58999999999999999998654 134689999999999
Q ss_pred cccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEE
Q psy12559 313 EMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFF 391 (610)
Q Consensus 313 ~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~ 391 (610)
+..+.+++++|++++|.|- ......|||+.....+.+....-.+|.++++|+|.++.++++|..+|+.|++.||++++.
T Consensus 425 elv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~ 504 (887)
T KOG0467|consen 425 ELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIR 504 (887)
T ss_pred cceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHH
Confidence 9999999999999999884 233455899432333333322335899999999999999999999999999999999998
Q ss_pred EcCCCCcEEEEEechhhHHHHHHHHhhhc-ccceEecCceeEEEEeecccceeee-------eeeeccCCCCccEEEEEE
Q psy12559 392 YDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQPFDFDY-------LHKKQSGGSGQYGRVIGT 463 (610)
Q Consensus 392 ~d~etge~il~g~GelhLei~~~~L~~~~-~v~v~~s~p~V~yrEti~~~~~~~~-------~~~~~~g~~~~~~~v~~~ 463 (610)
. +++||+++...||+|||.|+.+|++ | ++++.+|+|.|+||||+.+.+...- .+.+..| + ..+.++
T Consensus 505 v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~---~-~ki~~~ 578 (887)
T KOG0467|consen 505 V-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRG---Q-LKIKLR 578 (887)
T ss_pred H-hhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccchhhhccccchhhhhhhcCccccccccc---c-eeEEee
Confidence 8 5899999999999999999999999 7 8999999999999999955432210 0000010 0 222333
Q ss_pred EEeCCC----------------------------C-------------------C-C------CC-----cEEEeccccC
Q psy12559 464 LEPLPP----------------------------S-------------------A-N------TK-----LEFIDETVGT 484 (610)
Q Consensus 464 ~ePl~~----------------------------~-------------------~-~------~~-----~~f~~~~~g~ 484 (610)
+.|++. . . . +. ..|...-.|.
T Consensus 579 ~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~ 658 (887)
T KOG0467|consen 579 VVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGP 658 (887)
T ss_pred ecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCC
Confidence 333310 0 0 0 00 0122222222
Q ss_pred CC-------------------CcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCC---chhHHhhhccCcc
Q psy12559 485 NV-------------------PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDS---NEISFILAAHDPV 542 (610)
Q Consensus 485 ~~-------------------~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds---~~~~f~~a~~~~~ 542 (610)
++ .+ |-+++..||+.++.+||||.+|+.|+.|.+..+...+..+ ..+....|+..+.
T Consensus 659 nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kesc 737 (887)
T KOG0467|consen 659 NILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQLATSSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSC 737 (887)
T ss_pred ceeeccccchhhhhhhcchHHHH-HHHHHhhhHhhhhccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHH
Confidence 21 12 5589999999999999999999999999998855544333 1133344445555
Q ss_pred eeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEE
Q psy12559 543 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLV 585 (610)
Q Consensus 543 ~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I 585 (610)
+++...-.+ .+..++....+.+..|..|.++.-++.|++.|
T Consensus 738 r~Afl~~~p--Rl~~aMYsC~I~t~~e~LGkvYAVlskR~gkV 778 (887)
T KOG0467|consen 738 RAAFLCWSP--RIMAAMYSCDIQTASEVLGKVYAVLSKRHGKV 778 (887)
T ss_pred HHHHhcCCH--HHhhhheeeeeeehHHHhhhHHhhhhhhcchh
Confidence 554444444 57777777888889999999988887777766
No 23
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-56 Score=448.03 Aligned_cols=325 Identities=30% Similarity=0.466 Sum_probs=287.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||+...||||||||-+....+.|++++||++|||||.||.+||+|.|..+|+++|+|||.+|+.+||+.+++.|.+.+++
T Consensus 43 MDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~ 122 (603)
T COG1217 43 MDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK 122 (603)
T ss_pred cCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+||||+||+.++++++++++-+.|-
T Consensus 123 PIVVvNKiDrp~Arp~~Vvd~vfDLf~----------------------------------------------------- 149 (603)
T COG1217 123 PIVVINKIDRPDARPDEVVDEVFDLFV----------------------------------------------------- 149 (603)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHH-----------------------------------------------------
Confidence 999999999999999999988765441
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCC----------ccHHHHHHHHHHhCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYLP 230 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~----------~gv~~Lld~i~~~lP 230 (610)
.+...||+ --+|++..||+.| ..+.+|++.|.+|.|
T Consensus 150 -------~L~A~deQ---------------------------LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 150 -------ELGATDEQ---------------------------LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred -------HhCCChhh---------------------------CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 11111111 1257777777654 347899999999999
Q ss_pred CCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC---eEEEeceE
Q psy12559 231 NPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRL 306 (610)
Q Consensus 231 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~---~~~~v~~i 306 (610)
+|... .++||.++|+-..++++ |++..|||++|++|+|+.|.+...+ ...||+++
T Consensus 196 ~P~~~---------------------~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kl 254 (603)
T COG1217 196 APKGD---------------------LDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKL 254 (603)
T ss_pred CCCCC---------------------CCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEee
Confidence 99732 78999999999999999 9999999999999999999876543 45689999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCc---------CHHHHHH
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNK---------DRDNFSK 376 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~---------d~~kL~~ 376 (610)
+-+.|-++.++++|.||||++|+|+ +...|||+| ++.++..++.+.+-+|.+++.+..++.. --.++.+
T Consensus 255 lgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~-d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~d 333 (603)
T COG1217 255 LGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTIC-DPDNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRD 333 (603)
T ss_pred eeccceeeeecccccccCEEEEcCccccccccccc-CCCCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHH
Confidence 9999999999999999999999999 899999999 8999999999999999999999876643 1245677
Q ss_pred HHHHHHhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEE
Q psy12559 377 AVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKE 435 (610)
Q Consensus 377 ~L~~L~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrE 435 (610)
.|.+=...+-+|+++--++...+.++|.|||||-|+++-++|+ |.|+.+|.|+|.|||
T Consensus 334 RL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE-GfEl~VsrP~Vi~ke 391 (603)
T COG1217 334 RLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE-GFELQVSRPEVIIKE 391 (603)
T ss_pred HHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc-ceEEEecCceEEEEe
Confidence 7777777899999976555678999999999999999999998 999999999999998
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-55 Score=448.52 Aligned_cols=384 Identities=28% Similarity=0.472 Sum_probs=315.0
Q ss_pred CCChHHHHHhcceeecceeEEEecC-----eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKD-----HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~-----~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|+|+.||||||||++..+++.|+. |.+||||||||+||+-||.|+|..|.||+|||||+.||++||..-..+|.
T Consensus 46 LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl 125 (603)
T COG0481 46 LDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL 125 (603)
T ss_pred hhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH
Confidence 6999999999999999999999863 89999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
.+++-+|-||||||++.++++++.++|.+.+|..+.
T Consensus 126 e~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-------------------------------------------- 161 (603)
T COG0481 126 ENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-------------------------------------------- 161 (603)
T ss_pred HcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc--------------------------------------------
Confidence 999999999999999999999999999999885421
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCc
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 235 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~ 235 (610)
-.+..||++|.||+++|++|++.+|+|...
T Consensus 162 --------------------------------------------------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 162 --------------------------------------------------DAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred --------------------------------------------------hheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 014469999999999999999999999742
Q ss_pred cccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
+++|+.|++|..+.|++ |.++++||+.|++++||+|....+|++..|..+..+.. ..
T Consensus 192 ---------------------~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~ 249 (603)
T COG0481 192 ---------------------PDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KM 249 (603)
T ss_pred ---------------------CCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-Cc
Confidence 78999999999999999 99999999999999999999999999999999887765 67
Q ss_pred cccCcccCCCEEEE-cCC----CcccCceEecCC-CCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCee
Q psy12559 315 EDVEEVLAGDIFAL-FGV----DCASGDTFVTDK-NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTF 388 (610)
Q Consensus 315 ~~v~~a~aGdiv~i-~gl----~~~~Gdtl~~~~-~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl 388 (610)
.+.+++.||+++-+ +|+ +++.|||+++.. ....+++.++-..|++++.+.|.+.+|.+.|.+||.+|..+|.+|
T Consensus 250 ~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl 329 (603)
T COG0481 250 VKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASL 329 (603)
T ss_pred cccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhccccccee
Confidence 88999999999864 454 789999999432 234577888889999999999999999999999999999999999
Q ss_pred EEEEcCCCCcEEE-----EEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEE
Q psy12559 389 HFFYDPESKETLV-----SGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGT 463 (610)
Q Consensus 389 ~~~~d~etge~il-----~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 463 (610)
.++ +||.+.+- ..+|-|||||+++||+|+|++++....|.|.|+=..+........-....... ..+.-.
T Consensus 330 ~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~---~~I~~i 404 (603)
T COG0481 330 TYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTDGEEIEVDNPSDLPDP---NKIEEI 404 (603)
T ss_pred eec--cccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecCCceEEEEEEcCCcEEEecChHhCCCh---hhhhee
Confidence 986 46766543 34899999999999999999999999999999965544322111000000000 011111
Q ss_pred EEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceee-eEEEE
Q psy12559 464 LEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG-VRMVL 519 (610)
Q Consensus 464 ~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~-v~v~l 519 (610)
-|| |+... --.|.+|..+|.+=++ -++|......-.| -++.|
T Consensus 405 ~EP----------~v~~~--ii~P~eylG~vm~Lcq--~kRG~~~~m~yl~~~rv~l 447 (603)
T COG0481 405 EEP----------YVKAT--IITPQEYLGNVMELCQ--EKRGIQIDMEYLDQNRVML 447 (603)
T ss_pred eCc----------eeEEE--EeCcHHHHHHHHHHHH--HhcCceecceEecCceEEE
Confidence 122 11110 1368899999988777 4677655544444 34444
No 25
>KOG0462|consensus
Probab=100.00 E-value=1.3e-56 Score=462.51 Aligned_cols=321 Identities=29% Similarity=0.466 Sum_probs=283.1
Q ss_pred CCChHHHHHhcceeecceeEEEecC---eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~---~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
||.+..||||||||++...++.|++ |.+||||||||+||+.||.|+|..||||||||||.+|+++||...+..|.+.
T Consensus 97 LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~ 176 (650)
T KOG0462|consen 97 LDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA 176 (650)
T ss_pred hhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc
Confidence 6999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHH
Q psy12559 78 DVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 157 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (610)
|+.+|.||||||++.++++++..++.+.|+..+
T Consensus 177 ~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~----------------------------------------------- 209 (650)
T KOG0462|consen 177 GLAIIPVLNKIDLPSADPERVENQLFELFDIPP----------------------------------------------- 209 (650)
T ss_pred CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc-----------------------------------------------
Confidence 999999999999999999999999988876331
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccc
Q psy12559 158 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTN 237 (610)
Q Consensus 158 ~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~ 237 (610)
-+++..||++|.|+..+|++|++.+|+|...
T Consensus 210 -----------------------------------------------~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~-- 240 (650)
T KOG0462|consen 210 -----------------------------------------------AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI-- 240 (650)
T ss_pred -----------------------------------------------cceEEEEeccCccHHHHHHHHHhhCCCCCCC--
Confidence 1467789999999999999999999999743
Q ss_pred cccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEec--cCcc
Q psy12559 238 YAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH--SNEM 314 (610)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~--g~~~ 314 (610)
.++||.+++|..+.|++ |.|+++||..|.+++||+|....+++...++.+-.|. .-..
T Consensus 241 -------------------~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~ 301 (650)
T KOG0462|consen 241 -------------------RDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPV 301 (650)
T ss_pred -------------------CCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceee
Confidence 78999999999999999 9999999999999999999998888766666554444 3333
Q ss_pred cccCcccCCCEEEEcC-C-CcccCceEecCC--CCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEE
Q psy12559 315 EDVEEVLAGDIFALFG-V-DCASGDTFVTDK--NNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHF 390 (610)
Q Consensus 315 ~~v~~a~aGdiv~i~g-l-~~~~Gdtl~~~~--~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~ 390 (610)
.+++...+|+|++-.+ + +...|||+++.. .....++.++.+.|++++...|.+.+|...|.+++.+|..+|+++.+
T Consensus 302 ~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v 381 (650)
T KOG0462|consen 302 VELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTV 381 (650)
T ss_pred eeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhccccccee
Confidence 3444455566666555 4 788999999533 34466777888899999999999999999999999999999999999
Q ss_pred EEcCCCC----cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEee
Q psy12559 391 FYDPESK----ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETL 437 (610)
Q Consensus 391 ~~d~etg----e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti 437 (610)
..+ .++ -|.++++|.|||||+++||+++||.++.+++|+|+||=-.
T Consensus 382 ~~~-~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~ 431 (650)
T KOG0462|consen 382 IKE-SSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVY 431 (650)
T ss_pred eec-CCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEEEe
Confidence 874 444 3699999999999999999999999999999999999443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.6e-48 Score=393.44 Aligned_cols=232 Identities=61% Similarity=0.947 Sum_probs=225.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||+.++|++||+||+++..+|.|+++++||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+.+.+.++|
T Consensus 39 ~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p 118 (270)
T cd01886 39 MDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP 118 (270)
T ss_pred cCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||||+.+++++++++++++.++..+.+.++|++...+|.|++|++++++|.|....|......++|+++.+.+.+
T Consensus 119 ~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~ 198 (270)
T cd01886 119 RIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEE 198 (270)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999954457777888999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
+|++|+|.+|+.||+|||+||++++++.+++..+|++++..+.++|||||||.+|.|++.|||+|..++|+|
T Consensus 199 ~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 199 AREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=7.8e-43 Score=351.85 Aligned_cols=221 Identities=35% Similarity=0.538 Sum_probs=207.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||+||.++..++.|+++++||||||||.||..++.++++.+|++|+|+|+..|++.||+.+|+++...++|
T Consensus 46 ~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P 125 (267)
T cd04169 46 SDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP 125 (267)
T ss_pred CCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCC-ceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGD-NLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 159 (610)
+++|+||||+.++++.++++++++.|+..++++++|++.+..|.|++|++++++|.|....|. .....++|+++.
T Consensus 126 ~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~---- 201 (267)
T cd04169 126 IITFINKLDREGRDPLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD---- 201 (267)
T ss_pred EEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH----
Confidence 999999999999999999999999999999999999999999999999999999999433233 455566676544
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
|.+++.||+|||+|+++++++.+++...+++++..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 202 -------e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 202 -------PKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred -------HHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=2.3e-41 Score=343.61 Aligned_cols=230 Identities=38% Similarity=0.596 Sum_probs=221.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|+.++|++||+|+.++...+.|+++.++|||||||.+|..++..+++.+|++++|+|+..|++.||+.+|+++...++|
T Consensus 39 ~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p 118 (268)
T cd04170 39 SDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP 118 (268)
T ss_pred CCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
.++|+||||+.++++++.++++++.++..++++++|++.+.+|.|++|++.++++.|.. |......++|+++.+.+.+
T Consensus 119 ~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~ 196 (268)
T cd04170 119 RIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAE 196 (268)
T ss_pred EEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999964 3445667899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
+|.+|+|.+|+.||+|||+||++++++.+++..++++++..+.++|||||||+++.|++.|++++.+++|+|
T Consensus 197 ~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 197 AREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=2e-40 Score=329.06 Aligned_cols=199 Identities=42% Similarity=0.654 Sum_probs=186.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|+.++|++||+|+.++..++.|+++++||||||||.+|..++.++++.+|++++|+|+.+|++.||+.+|+++.+.++|
T Consensus 39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P 118 (237)
T cd04168 39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP 118 (237)
T ss_pred CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||||+.++++++++++|++.|+.+++|+|+|. +++.+. .. .+
T Consensus 119 ~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~--------~~~~~~--------------~~-----------~~ 165 (237)
T cd04168 119 TIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG--------LAPNIC--------------ET-----------NE 165 (237)
T ss_pred EEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--------Eeeeee--------------ee-----------ee
Confidence 9999999999999999999999999999999999994 222110 01 12
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
.+++|+|.+|+.||+|||+||++++++.+++..++++++..++++|||||||.+|.|++.|||+|++++|+|
T Consensus 166 ~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 166 IDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred ccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999999999999999999999999999999999999999999999998
No 30
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.8e-33 Score=298.55 Aligned_cols=230 Identities=25% Similarity=0.380 Sum_probs=189.6
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||.+++||+||+|++++...+.+++++++|||||||.+|..++.++++.+|++++|||+.+|++.||+++|+++...++|
T Consensus 50 ~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~ 129 (394)
T PRK12736 50 IDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVP 129 (394)
T ss_pred hcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-EEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 C-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~-i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
. |+++||||+... ++.++.+.+
T Consensus 130 ~~IvviNK~D~~~~--~~~~~~i~~------------------------------------------------------- 152 (394)
T PRK12736 130 YLVVFLNKVDLVDD--EELLELVEM------------------------------------------------------- 152 (394)
T ss_pred EEEEEEEecCCcch--HHHHHHHHH-------------------------------------------------------
Confidence 5 689999998631 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc--------cHHHHHHHHHHhCCC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPN 231 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~--------gv~~Lld~i~~~lPs 231 (610)
++...++........+|++++||++|. ++..|++++.+++|.
T Consensus 153 ------------------------------~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 153 ------------------------------EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred ------------------------------HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 111111111111234788999999983 689999999999997
Q ss_pred CCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--CeEEEeceEEE
Q psy12559 232 PGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVR 308 (610)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i~~ 308 (610)
|... .++||.++|++++.+++ |++++|||.+|+|+.||+|++.+. +...+|++|..
T Consensus 203 ~~~~---------------------~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~ 261 (394)
T PRK12736 203 PERD---------------------TDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM 261 (394)
T ss_pred CCCC---------------------CCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE
Confidence 7421 57899999999999988 999999999999999999998765 56678999874
Q ss_pred eccCcccccCcccCCCEEEE--cCC---CcccCceEecCC
Q psy12559 309 LHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDK 343 (610)
Q Consensus 309 ~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~ 343 (610)
...++++|.|||++++ .|+ +++.|++|| ++
T Consensus 262 ----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~-~~ 296 (394)
T PRK12736 262 ----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA-KP 296 (394)
T ss_pred ----CCEEccEECCCCEEEEEECCCcHHhCCcceEEe-cC
Confidence 2567899999999965 787 588999999 44
No 31
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=9.9e-33 Score=295.80 Aligned_cols=228 Identities=26% Similarity=0.399 Sum_probs=185.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++||+||+|++++...|.|++++++|+|||||.+|..++.++++.+|+|++|||+.+|++.||+++++++...++|
T Consensus 50 ~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~ 129 (409)
T CHL00071 50 IDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVP 129 (409)
T ss_pred ccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.|+++||||+... ++.++.+.+
T Consensus 130 ~iIvvvNK~D~~~~--~~~~~~~~~------------------------------------------------------- 152 (409)
T CHL00071 130 NIVVFLNKEDQVDD--EELLELVEL------------------------------------------------------- 152 (409)
T ss_pred EEEEEEEccCCCCH--HHHHHHHHH-------------------------------------------------------
Confidence 5689999998632 222222211
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc------------------cHHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK------------------GVQTL 221 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~------------------gv~~L 221 (610)
++...|+........+|++++||++|. |+..|
T Consensus 153 ------------------------------~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~l 202 (409)
T CHL00071 153 ------------------------------EVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNL 202 (409)
T ss_pred ------------------------------HHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHH
Confidence 111112211111224677777887764 46889
Q ss_pred HHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecC--CC
Q psy12559 222 LDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TD 298 (610)
Q Consensus 222 ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~--~~ 298 (610)
+++|.+++|+|... .++||.++|++++.+++ |.+++|||++|+++.||+|.+.+ .+
T Consensus 203 l~~l~~~~~~p~~~---------------------~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~ 261 (409)
T CHL00071 203 MDAVDSYIPTPERD---------------------TDKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRET 261 (409)
T ss_pred HHHHHhhCCCCCCC---------------------CCCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCC
Confidence 99999999887421 57899999999999988 99999999999999999998754 34
Q ss_pred eEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 299 KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 299 ~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
...+|++|... ..++++|.|||+|++ .|+ +++.||+|+
T Consensus 262 ~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~ 304 (409)
T CHL00071 262 KTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLA 304 (409)
T ss_pred cEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEe
Confidence 66789998743 347899999999964 576 589999999
No 32
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=9.8e-33 Score=297.39 Aligned_cols=225 Identities=23% Similarity=0.223 Sum_probs=186.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
||++++||+||+||+++..+|.|+++.+||||||||.||..++.++++.+|+||+||||.+|+ +.||+++|++
T Consensus 60 ~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~ 139 (446)
T PTZ00141 60 LDKLKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL 139 (446)
T ss_pred hcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHhcCCCe-EEEEecccCCCC-----CHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe
Q psy12559 74 MKRYDVPC-IAFINKLDRLGA-----DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI 147 (610)
Q Consensus 74 ~~~~~ip~-i~~iNKiDr~~~-----~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~ 147 (610)
+...++|. |++|||||+... .++++.++++..|+..
T Consensus 140 ~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~-------------------------------------- 181 (446)
T PTZ00141 140 AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKV-------------------------------------- 181 (446)
T ss_pred HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhc--------------------------------------
Confidence 99999996 589999996542 3444444444443210
Q ss_pred ecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH--------
Q psy12559 148 EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ-------- 219 (610)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~-------- 219 (610)
-....-+|+++.||++|.|+.
T Consensus 182 ---------------------------------------------------g~~~~~~~~ipiSa~~g~ni~~~~~~~~W 210 (446)
T PTZ00141 182 ---------------------------------------------------GYNPEKVPFIPISGWQGDNMIEKSDNMPW 210 (446)
T ss_pred ---------------------------------------------------CCCcccceEEEeecccCCCcccCCCCCcc
Confidence 000112677777999999885
Q ss_pred ----HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEe
Q psy12559 220 ----TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYN 294 (610)
Q Consensus 220 ----~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~ 294 (610)
.|+++|.+. +.|... .+.||.+.|..++..++ |+++.|||.+|+|+.||+|.+
T Consensus 211 y~G~tL~~~l~~~-~~~~~~---------------------~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i 268 (446)
T PTZ00141 211 YKGPTLLEALDTL-EPPKRP---------------------VDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTF 268 (446)
T ss_pred cchHHHHHHHhCC-CCCCcC---------------------CCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEE
Confidence 488988654 434211 56899999999999888 999999999999999999999
Q ss_pred cCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 295 VRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 295 ~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
.+.+...+|++|... ..++++|.|||.+++ .++ +++.|++|+
T Consensus 269 ~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 269 APSGVTTEVKSVEMH----HEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred ccCCcEEEEEEEEec----CcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 998888899998743 467999999999985 555 578999999
No 33
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2e-32 Score=294.81 Aligned_cols=225 Identities=22% Similarity=0.233 Sum_probs=184.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
||+.++||+|||||+++...|.|+++.+||||||||.||..++.++++.+|+||+||||.+|. ..||+++|..
T Consensus 60 ~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~ 139 (447)
T PLN00043 60 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL 139 (447)
T ss_pred hcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999984 2799999999
Q ss_pred HHhcCCCe-EEEEecccCCC-----CCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe
Q psy12559 74 MKRYDVPC-IAFINKLDRLG-----ADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI 147 (610)
Q Consensus 74 ~~~~~ip~-i~~iNKiDr~~-----~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~ 147 (610)
+...++|. |+++||||+.. .++++++++++..++..
T Consensus 140 ~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~-------------------------------------- 181 (447)
T PLN00043 140 AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-------------------------------------- 181 (447)
T ss_pred HHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHc--------------------------------------
Confidence 99999976 77999999872 23444444444433210
Q ss_pred ecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH--------
Q psy12559 148 EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ-------- 219 (610)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~-------- 219 (610)
.+ ...-+|+++.||++|.|+.
T Consensus 182 -------------------------------------g~--------------~~~~~~~ipiSa~~G~ni~~~~~~~~W 210 (447)
T PLN00043 182 -------------------------------------GY--------------NPDKIPFVPISGFEGDNMIERSTNLDW 210 (447)
T ss_pred -------------------------------------CC--------------CcccceEEEEeccccccccccccCCcc
Confidence 00 0011456666898888863
Q ss_pred ----HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEe
Q psy12559 220 ----TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYN 294 (610)
Q Consensus 220 ----~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~ 294 (610)
.|+++|.+ +|.|... .+.||.+.|..++..++ |+++.|||.+|++++||+|.+
T Consensus 211 y~g~tLl~~l~~-i~~p~~~---------------------~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~ 268 (447)
T PLN00043 211 YKGPTLLEALDQ-INEPKRP---------------------SDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTF 268 (447)
T ss_pred cchHHHHHHHhh-cCCCccc---------------------cCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEE
Confidence 48888865 4444311 56899999999999888 999999999999999999999
Q ss_pred cCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 295 VRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 295 ~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
.+.+...+|++|.. ...++++|.|||.+++ .++ +++.|++|+
T Consensus 269 ~P~~~~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 269 GPTGLTTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred cCCCCEEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEc
Confidence 99888889999974 3568999999999975 565 578999999
No 34
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=6.2e-32 Score=288.66 Aligned_cols=228 Identities=26% Similarity=0.396 Sum_probs=186.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||.+++|++||+|++++.+.+.+++++++|||||||.+|..++.++++.+|++++|||+.+|+..||++++..+...++|
T Consensus 50 ~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~ 129 (394)
T TIGR00485 50 IDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVP 129 (394)
T ss_pred ccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eE-EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i-~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.+ +++||||+... ++.++.+.+
T Consensus 130 ~iIvvvNK~Dl~~~--~~~~~~~~~------------------------------------------------------- 152 (394)
T TIGR00485 130 YIVVFLNKCDMVDD--EELLELVEM------------------------------------------------------- 152 (394)
T ss_pred EEEEEEEecccCCH--HHHHHHHHH-------------------------------------------------------
Confidence 87 68999998631 122211111
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc--------cHHHHHHHHHHhCCC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK--------GVQTLLDAVLDYLPN 231 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~--------gv~~Lld~i~~~lPs 231 (610)
++...++........+|++++||+++. ++..|+++|.+++|.
T Consensus 153 ------------------------------~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~ 202 (394)
T TIGR00485 153 ------------------------------EVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPT 202 (394)
T ss_pred ------------------------------HHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCC
Confidence 111111111111234788999999874 567899999998887
Q ss_pred CCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--CeEEEeceEEE
Q psy12559 232 PGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVR 308 (610)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i~~ 308 (610)
|... .++||.++|++++.+++ |++++|||.+|++++||+|++.+. +...+|++|..
T Consensus 203 ~~~~---------------------~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~ 261 (394)
T TIGR00485 203 PERE---------------------TDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEM 261 (394)
T ss_pred CCCC---------------------CCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEE
Confidence 7422 56899999999999988 999999999999999999998763 56778999884
Q ss_pred eccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 309 LHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 309 ~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
. ..++++|.|||.+++ .|+ +++.|++|+
T Consensus 262 ~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 262 F----RKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred C----CeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 3 467899999999975 777 578999999
No 35
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2e-31 Score=300.48 Aligned_cols=272 Identities=24% Similarity=0.338 Sum_probs=221.1
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEec
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 87 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNK 87 (610)
..+|||+.....++.|+++.|+|||||||.+|...+.++++.+|++|||||+.+|+..||+.+|+++...++|+|+++||
T Consensus 319 e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNK 398 (787)
T PRK05306 319 EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINK 398 (787)
T ss_pred ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEEC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHH
Q psy12559 88 LDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 167 (610)
Q Consensus 88 iDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e 167 (610)
||+.+++++++..++.. .+.
T Consensus 399 iDl~~a~~e~V~~eL~~-~~~----------------------------------------------------------- 418 (787)
T PRK05306 399 IDKPGANPDRVKQELSE-YGL----------------------------------------------------------- 418 (787)
T ss_pred ccccccCHHHHHHHHHH-hcc-----------------------------------------------------------
Confidence 99987776665555432 110
Q ss_pred HHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccc
Q psy12559 168 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 247 (610)
Q Consensus 168 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 247 (610)
..++ .+..+|++++||++|.|++.|+++|...... .+
T Consensus 419 -------------------~~e~----------~g~~vp~vpvSAktG~GI~eLle~I~~~~e~-~~------------- 455 (787)
T PRK05306 419 -------------------VPEE----------WGGDTIFVPVSAKTGEGIDELLEAILLQAEV-LE------------- 455 (787)
T ss_pred -------------------cHHH----------hCCCceEEEEeCCCCCCchHHHHhhhhhhhh-hh-------------
Confidence 0000 0223688889999999999999999753210 00
Q ss_pred eeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEE
Q psy12559 248 KVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 326 (610)
Q Consensus 248 ~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv 326 (610)
+.++ ++.|+.++|++++.+++ |.++++||++|+|+.||.|++.+ +.++++.+.+.+..++++|.|||+|
T Consensus 456 ---l~~~--~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V 525 (787)
T PRK05306 456 ---LKAN--PDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPV 525 (787)
T ss_pred ---cccC--CCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeE
Confidence 1122 67899999999999998 99999999999999999999853 4667777788788899999999999
Q ss_pred EEcCC-Cc-ccCceEecCCCC-----------------------ccccccccCC-----CceEEEEEEeCCCcCHHHHHH
Q psy12559 327 ALFGV-DC-ASGDTFVTDKNN-----------------------SISLESIYVA-----DPVVSMSIKAVNNKDRDNFSK 376 (610)
Q Consensus 327 ~i~gl-~~-~~Gdtl~~~~~~-----------------------~~~~~~~~~~-----~Pv~~~aiep~~~~d~~kL~~ 376 (610)
.|.|| ++ .+||||+...+. ...+..+..+ .+.+.+.|.+...+..+.|..
T Consensus 526 ~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~ 605 (787)
T PRK05306 526 EILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKD 605 (787)
T ss_pred EEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHH
Confidence 99999 66 899999831110 1122222111 136899999999999999999
Q ss_pred HHHHHHhcCCeeEEEE
Q psy12559 377 AVQRFTKEDPTFHFFY 392 (610)
Q Consensus 377 ~L~~L~~eDpsl~~~~ 392 (610)
+|.+|..+++.+.+-.
T Consensus 606 ~l~~l~~~~v~~~i~~ 621 (787)
T PRK05306 606 SLEKLSTDEVKVNIIH 621 (787)
T ss_pred HHHhhcccCCceEEEe
Confidence 9999999999998865
No 36
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.9e-31 Score=284.44 Aligned_cols=228 Identities=26% Similarity=0.382 Sum_probs=186.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++|++||+|++++...+.|++++|+|||||||.+|..++.++++.+|++++|||+.+|++.||+++|+++...++|
T Consensus 50 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p 129 (396)
T PRK00049 50 IDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129 (396)
T ss_pred ccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eE-EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i-~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.+ +++||||+.. .++.++.+...
T Consensus 130 ~iiVvvNK~D~~~--~~~~~~~~~~~------------------------------------------------------ 153 (396)
T PRK00049 130 YIVVFLNKCDMVD--DEELLELVEME------------------------------------------------------ 153 (396)
T ss_pred EEEEEEeecCCcc--hHHHHHHHHHH------------------------------------------------------
Confidence 86 6899999863 11222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc----------cHHHHHHHHHHhC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK----------GVQTLLDAVLDYL 229 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~----------gv~~Lld~i~~~l 229 (610)
+...++..-.....+|++++||+++. |+..|+++|.+++
T Consensus 154 -------------------------------i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 154 -------------------------------VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred -------------------------------HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 11111110001134677778888764 6789999999999
Q ss_pred CCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--CeEEEeceE
Q psy12559 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRL 306 (610)
Q Consensus 230 Psp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i 306 (610)
|.|... .++||.+.|..++..++ |.++.|||.+|++++||+|++.+. ++..+|++|
T Consensus 203 ~~p~~~---------------------~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI 261 (396)
T PRK00049 203 PTPERA---------------------IDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGV 261 (396)
T ss_pred CCCCCC---------------------CCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEE
Confidence 877421 57899999999999888 999999999999999999998764 567788888
Q ss_pred EEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
... ..++++|.|||.+++ .|+ +++.|++|+
T Consensus 262 ~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 262 EMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 743 467999999999986 776 688999999
No 37
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3e-31 Score=283.20 Aligned_cols=230 Identities=25% Similarity=0.370 Sum_probs=187.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|.+++|++||+|++++...+.+++.+++|||||||.+|..++.+++..+|+|++|||+.+|+..||++++..+...++|
T Consensus 50 ~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~ 129 (396)
T PRK12735 50 IDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129 (396)
T ss_pred ccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eE-EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i-~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.| +++||||+.. .++.++.+...
T Consensus 130 ~iivvvNK~Dl~~--~~~~~~~~~~e------------------------------------------------------ 153 (396)
T PRK12735 130 YIVVFLNKCDMVD--DEELLELVEME------------------------------------------------------ 153 (396)
T ss_pred eEEEEEEecCCcc--hHHHHHHHHHH------------------------------------------------------
Confidence 77 5799999863 11222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCC----------ccHHHHHHHHHHhC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYL 229 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~----------~gv~~Lld~i~~~l 229 (610)
+...++..-.....+|++++||+++ .|+..|+++|.+.+
T Consensus 154 -------------------------------i~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 154 -------------------------------VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred -------------------------------HHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1111111000112467888899887 47899999999999
Q ss_pred CCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--CeEEEeceE
Q psy12559 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRL 306 (610)
Q Consensus 230 Psp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i 306 (610)
|.|... .++||.++|..++..++ |.++.|||.+|++++||+|++.+. ++..+|++|
T Consensus 203 ~~p~~~---------------------~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI 261 (396)
T PRK12735 203 PEPERA---------------------IDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGV 261 (396)
T ss_pred CCCCcc---------------------CCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEE
Confidence 977421 57899999999999988 999999999999999999998865 456788888
Q ss_pred EEeccCcccccCcccCCCEEEE--cCC---CcccCceEecCC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDK 343 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~ 343 (610)
.. ...++++|.|||.+++ .|+ +++.|++|| ++
T Consensus 262 ~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~-~~ 298 (396)
T PRK12735 262 EM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLA-KP 298 (396)
T ss_pred EE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEE-cC
Confidence 74 3568999999999986 777 688999999 44
No 38
>PLN03126 Elongation factor Tu; Provisional
Probab=99.98 E-value=4.6e-31 Score=285.15 Aligned_cols=224 Identities=27% Similarity=0.396 Sum_probs=182.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||+|||||+++...|.|++++++|||||||.+|..++.++++.+|+|++||||.+|++.||+++|+++...++|
T Consensus 119 ~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~ 198 (478)
T PLN03126 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 198 (478)
T ss_pred ccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEecccCCCCCHHHHHH----HHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 81 -CIAFINKLDRLGADPYRVIN----QMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~----~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
.|+++||||+.. .++.++ ++++.|.
T Consensus 199 ~iIvvvNK~Dl~~--~~~~~~~i~~~i~~~l~------------------------------------------------ 228 (478)
T PLN03126 199 NMVVFLNKQDQVD--DEELLELVELEVRELLS------------------------------------------------ 228 (478)
T ss_pred eEEEEEecccccC--HHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 568999999864 222222 2322221
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc------------------c
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK------------------G 217 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~------------------g 217 (610)
..-.....+|++++||+++. +
T Consensus 229 -----------------------------------------~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~ 267 (478)
T PLN03126 229 -----------------------------------------SYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDK 267 (478)
T ss_pred -----------------------------------------hcCCCcCcceEEEEEccccccccccccccccCCCchhhh
Confidence 10001123455555655542 2
Q ss_pred HHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecC
Q psy12559 218 VQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR 296 (610)
Q Consensus 218 v~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~ 296 (610)
+..|+++|.++.|.|... .+.||.++|..++..++ |.++.|+|.+|++++||+|++.+
T Consensus 268 i~~Ll~~l~~~~~~p~r~---------------------~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p 326 (478)
T PLN03126 268 IYELMDAVDSYIPIPQRQ---------------------TDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVG 326 (478)
T ss_pred HHHHHHHHHHhCCCCCCc---------------------cccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEec
Confidence 567999999887766421 56899999999999988 99999999999999999999987
Q ss_pred CC--eEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 297 TD--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 297 ~~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
.+ ...+|++|... ..++++|.|||.+++ .|+ +++.|++|+
T Consensus 327 ~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~ 373 (478)
T PLN03126 327 LRETRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLA 373 (478)
T ss_pred CCCceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEe
Confidence 64 45788888733 467999999999986 676 588999999
No 39
>PLN03127 Elongation factor Tu; Provisional
Probab=99.98 E-value=1.1e-30 Score=280.85 Aligned_cols=228 Identities=25% Similarity=0.375 Sum_probs=183.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|.+++||+|||||+++...|.+++++|+|||||||.+|..++.+++..+|++++|||+.+|++.||++++..+...++|
T Consensus 99 ~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip 178 (447)
T PLN03127 99 IDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 178 (447)
T ss_pred ccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-EEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 C-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~-i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
. |+++||||+.. .++.++.+...+
T Consensus 179 ~iIvviNKiDlv~--~~~~~~~i~~~i----------------------------------------------------- 203 (447)
T PLN03127 179 SLVVFLNKVDVVD--DEELLELVEMEL----------------------------------------------------- 203 (447)
T ss_pred eEEEEEEeeccCC--HHHHHHHHHHHH-----------------------------------------------------
Confidence 6 68999999863 122222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEecccc---CCcc-------HHHHHHHHHHhC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTAL---KNKG-------VQTLLDAVLDYL 229 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~---~~~g-------v~~Lld~i~~~l 229 (610)
.+.+...-.....+|++++||+ ++.| +..|+++|.+++
T Consensus 204 --------------------------------~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 204 --------------------------------RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred --------------------------------HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 0101000001123677777765 4444 788999999999
Q ss_pred CCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC----CeEEEec
Q psy12559 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT----DKKVRVS 304 (610)
Q Consensus 230 Psp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~----~~~~~v~ 304 (610)
|.|... .++||.+.|..++..++ |.++.|||.+|++++||.|++.+. +...+|+
T Consensus 252 p~p~r~---------------------~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~Vk 310 (447)
T PLN03127 252 PEPVRV---------------------LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVT 310 (447)
T ss_pred CCCCcc---------------------cccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEE
Confidence 977421 56899999999999888 999999999999999999988754 3567888
Q ss_pred eEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 305 RLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 305 ~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
+|... ..+++++.|||.+++ .|+ +++.|++|+
T Consensus 311 sI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~ 347 (447)
T PLN03127 311 GVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVIC 347 (447)
T ss_pred EEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEe
Confidence 88744 456899999999985 777 688999999
No 40
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=265.09 Aligned_cols=230 Identities=25% Similarity=0.326 Sum_probs=184.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-------cchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-------v~~qt~~v~~~ 73 (610)
||.+++|||||+||+.+..+|+...+.++++|||||.||..+++.+.+++|.|||||||..| +..||++++-.
T Consensus 60 lD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 60 LDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL 139 (428)
T ss_pred ecCChhHHhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHhcCCCe-EEEEecccCCCCC---HHHHHHHHHH---HhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceE
Q psy12559 74 MKRYDVPC-IAFINKLDRLGAD---PYRVINQMRQ---KVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLR 146 (610)
Q Consensus 74 ~~~~~ip~-i~~iNKiDr~~~~---~~~~~~~i~~---~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~ 146 (610)
++..|+.. |++|||||....+ |+++..++.. .+|.++.
T Consensus 140 a~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~----------------------------------- 184 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPK----------------------------------- 184 (428)
T ss_pred HHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCcc-----------------------------------
Confidence 99999987 5899999998644 3333333222 1121111
Q ss_pred eecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccH--------
Q psy12559 147 IEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGV-------- 218 (610)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv-------- 218 (610)
.-.|+|+ ||++|.++
T Consensus 185 ------------------------------------------------------~v~FIPi---Sg~~G~Nl~~~s~~~p 207 (428)
T COG5256 185 ------------------------------------------------------DVPFIPI---SGFKGDNLTKKSENMP 207 (428)
T ss_pred ------------------------------------------------------CCeEEec---ccccCCcccccCcCCc
Confidence 0123333 66666554
Q ss_pred ----HHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEE
Q psy12559 219 ----QTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIY 293 (610)
Q Consensus 219 ----~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~ 293 (610)
..||++|- .+..|.. .-+.||+..|..++.... |++..+||.+|.|++||+|+
T Consensus 208 WY~GpTLleaLd-~~~~p~~---------------------~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~ 265 (428)
T COG5256 208 WYKGPTLLEALD-QLEPPER---------------------PLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVT 265 (428)
T ss_pred CccCChHHHHHh-ccCCCCC---------------------CCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEE
Confidence 33667765 4444431 157999999999998655 99999999999999999999
Q ss_pred ecCCCeEEEeceEEEeccCcccccCcccCCCEEE--EcCC---CcccCceEecCCCCcccc
Q psy12559 294 NVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFVTDKNNSISL 349 (610)
Q Consensus 294 ~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~~~~~~~~~~ 349 (610)
+.+.+....|+++. .++++++.+.+||.+. +.|+ +++.||+++ ++.+++..
T Consensus 266 ~~p~~~~~evksie----~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~-~~~n~~t~ 321 (428)
T COG5256 266 FMPAGVVGEVKSIE----MHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG-HSDNPPTV 321 (428)
T ss_pred EecCcceEEEeeee----ecccccccCCCCCeEEEEecCCchhccCCccEec-cCCCCccc
Confidence 99998888888887 4488899999999997 5776 799999999 55555443
No 41
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.97 E-value=4.5e-30 Score=274.80 Aligned_cols=229 Identities=21% Similarity=0.253 Sum_probs=176.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||+||+||+++...|.|++++++|||||||.+|..++..+++.+|+||+||||.+|++.||+++|..+...++|
T Consensus 55 ~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~ 134 (406)
T TIGR02034 55 VDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIR 134 (406)
T ss_pred ccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+|+||||+...+ .+.++.+.+.+.
T Consensus 135 ~iivviNK~D~~~~~-~~~~~~i~~~~~---------------------------------------------------- 161 (406)
T TIGR02034 135 HVVLAVNKMDLVDYD-EEVFENIKKDYL---------------------------------------------------- 161 (406)
T ss_pred cEEEEEEecccccch-HHHHHHHHHHHH----------------------------------------------------
Confidence 46799999997543 222322222110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------HHHHHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLD 227 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------Lld~i~~ 227 (610)
..++. .. ...+|+++.||++|.|+.. |+++|..
T Consensus 162 ---------------------------------~~~~~-~~-~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~ 206 (406)
T TIGR02034 162 ---------------------------------AFAEQ-LG-FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET 206 (406)
T ss_pred ---------------------------------HHHHH-cC-CCCccEEEeecccCCCCcccccCCCccchhHHHHHHHh
Confidence 00100 00 0124666679999998864 6676655
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
+|.|... .++||.+.|..++...+ +.-..|+|.+|+|++||+|++.+.+...+|++|
T Consensus 207 -~~~~~~~---------------------~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI 264 (406)
T TIGR02034 207 -VEVERDA---------------------QDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARI 264 (406)
T ss_pred -cCCCCCc---------------------CCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEE
Confidence 4444311 46788877776654322 223569999999999999999998888999999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC---CcccCceEecCCC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV---DCASGDTFVTDKN 344 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl---~~~~Gdtl~~~~~ 344 (610)
... ..++++|.|||.+++..- +++.|++|+ ++.
T Consensus 265 ~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~-~~~ 300 (406)
T TIGR02034 265 VTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLA-AAD 300 (406)
T ss_pred EEC----CcccCEeCCCCEEEEEECCccccCCccEEE-cCC
Confidence 743 346899999999987542 578999999 443
No 42
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.97 E-value=1.2e-29 Score=274.20 Aligned_cols=228 Identities=24% Similarity=0.287 Sum_probs=185.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC--CcchhhHHHHHHHHhcC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~--Gv~~qt~~v~~~~~~~~ 78 (610)
||++++||+||+|++++...|.|++++++|||||||.+|..++.++++.+|++|+|||+.+ |+..||+.++..+...+
T Consensus 59 ~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~ 138 (425)
T PRK12317 59 MDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG 138 (425)
T ss_pred hccCHhHhhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC
Confidence 5899999999999999999999999999999999999999999999999999999999999 99999999999999889
Q ss_pred CC-eEEEEecccCCCCCH---HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhH
Q psy12559 79 VP-CIAFINKLDRLGADP---YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADL 154 (610)
Q Consensus 79 ip-~i~~iNKiDr~~~~~---~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (610)
+| +++++||||+...+. ++..+++++.+.
T Consensus 139 ~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~----------------------------------------------- 171 (425)
T PRK12317 139 INQLIVAINKMDAVNYDEKRYEEVKEEVSKLLK----------------------------------------------- 171 (425)
T ss_pred CCeEEEEEEccccccccHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 85 678999999875321 122222222110
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------HH
Q psy12559 155 KKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LL 222 (610)
Q Consensus 155 ~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------Ll 222 (610)
..-.....+|+++.||++|.|+.. |+
T Consensus 172 ------------------------------------------~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~ 209 (425)
T PRK12317 172 ------------------------------------------MVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLL 209 (425)
T ss_pred ------------------------------------------hhCCCcCcceEEEeecccCCCccccccCCCcccHHHHH
Confidence 000011135778889999999874 88
Q ss_pred HHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEE
Q psy12559 223 DAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKV 301 (610)
Q Consensus 223 d~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~ 301 (610)
++|.. +|.|... .++||.+.|..++..++ |+++.|||.+|+++.||+|++.+.+...
T Consensus 210 ~~l~~-~~~~~~~---------------------~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~ 267 (425)
T PRK12317 210 EALDN-LKPPEKP---------------------TDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVG 267 (425)
T ss_pred HHHhc-CCCCccc---------------------cCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeE
Confidence 88754 6655321 57899999999999888 9999999999999999999999988888
Q ss_pred EeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEecCCC
Q psy12559 302 RVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 344 (610)
Q Consensus 302 ~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~~ 344 (610)
+|++|.. ...+++.|.|||.|++ .|+ ++..|++|+ ++.
T Consensus 268 ~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~-~~~ 310 (425)
T PRK12317 268 EVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCG-HPD 310 (425)
T ss_pred EEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEec-CCC
Confidence 9999884 3567999999999975 566 578999999 443
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.97 E-value=4.3e-29 Score=275.81 Aligned_cols=271 Identities=25% Similarity=0.330 Sum_probs=213.0
Q ss_pred HhcceeecceeEEEecCe-eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEec
Q psy12559 9 QRGITIQSAATYTLWKDH-NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 87 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~-~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNK 87 (610)
.+|||++....++.|++. .++|||||||.+|...+.++++.+|++|+|+|+.+|+..||..+|+++...++|+|+++||
T Consensus 117 ~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNK 196 (587)
T TIGR00487 117 AGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINK 196 (587)
T ss_pred CCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEEC
Confidence 578999999999999765 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHH
Q psy12559 88 LDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIE 167 (610)
Q Consensus 88 iDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e 167 (610)
+|+.+++++++...++. ++..
T Consensus 197 iDl~~~~~e~v~~~L~~-~g~~---------------------------------------------------------- 217 (587)
T TIGR00487 197 IDKPEANPDRVKQELSE-YGLV---------------------------------------------------------- 217 (587)
T ss_pred cccccCCHHHHHHHHHH-hhhh----------------------------------------------------------
Confidence 99987776555444322 1100
Q ss_pred HHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccc
Q psy12559 168 HVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDK 247 (610)
Q Consensus 168 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~ 247 (610)
.+. .+...|++.+||++|.|++.|+++|...- ...+
T Consensus 218 ---------~~~---------------------~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~~------------- 253 (587)
T TIGR00487 218 ---------PED---------------------WGGDTIFVPVSALTGDGIDELLDMILLQS-EVEE------------- 253 (587)
T ss_pred ---------HHh---------------------cCCCceEEEEECCCCCChHHHHHhhhhhh-hhcc-------------
Confidence 000 01124677789999999999999986421 0000
Q ss_pred eeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEE
Q psy12559 248 KVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIF 326 (610)
Q Consensus 248 ~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv 326 (610)
+..+ ++.|+.++|++++.+++ |.++++||++|+|++||.|.+.+. ..+|..|+.. +...+++|.||++|
T Consensus 254 ---l~~~--~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~---~g~~v~~a~~g~~v 323 (587)
T TIGR00487 254 ---LKAN--PNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDE---NGKSVKEAGPSKPV 323 (587)
T ss_pred ---ccCC--CCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECC---CCCCCCEECCCCEE
Confidence 1112 67899999999999988 999999999999999999998763 3456666543 44578999999999
Q ss_pred EEcCC-Cc-ccCceEecCCCC-----------------------ccccccccC-----CCceEEEEEEeCCCcCHHHHHH
Q psy12559 327 ALFGV-DC-ASGDTFVTDKNN-----------------------SISLESIYV-----ADPVVSMSIKAVNNKDRDNFSK 376 (610)
Q Consensus 327 ~i~gl-~~-~~Gdtl~~~~~~-----------------------~~~~~~~~~-----~~Pv~~~aiep~~~~d~~kL~~ 376 (610)
.|.|+ ++ .+||+|+.-.+. ...+..+.. ..|.+.+.|.+...+..+.|.+
T Consensus 324 ~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~ 403 (587)
T TIGR00487 324 EILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKN 403 (587)
T ss_pred EEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHH
Confidence 99999 55 889999831110 111222211 2488999999999999999999
Q ss_pred HHHHHHhcCCeeEEEE
Q psy12559 377 AVQRFTKEDPTFHFFY 392 (610)
Q Consensus 377 ~L~~L~~eDpsl~~~~ 392 (610)
+|++|..+++++.+..
T Consensus 404 ~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 404 SLEKLNNEEVKVKVIH 419 (587)
T ss_pred HHHhhcccCCeEEEEE
Confidence 9999999999998865
No 44
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.97 E-value=1.6e-29 Score=271.25 Aligned_cols=224 Identities=18% Similarity=0.230 Sum_probs=177.9
Q ss_pred CCChHHHHHhcceeecceeEEEe---------------c------------------CeeEEEecCCCCcCcHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLW---------------K------------------DHNINIIDTPGHVDFTVEVERAL 47 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~---------------~------------------~~~inlIDTPGh~dF~~ev~~al 47 (610)
+|.+++|++|||||+....++.| . .++++|||||||.+|..++.+++
T Consensus 59 ~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~ 138 (460)
T PTZ00327 59 TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGA 138 (460)
T ss_pred cccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHH
Confidence 57889999999999999887632 0 24799999999999999999999
Q ss_pred hhcCEEEEEEecCCC-cchhhHHHHHHHHhcCCCe-EEEEecccCCCC-CHHHHHHHHHHHhCCCeeEeeccccCCCCee
Q psy12559 48 RVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVPC-IAFINKLDRLGA-DPYRVINQMRQKVGHNAAFLQIPIGLGSETK 124 (610)
Q Consensus 48 ~~~D~ailVvDa~~G-v~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~-~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~ 124 (610)
..+|+|++||||.+| +++||++++..+...++|. |+++||||+... ..++.++++++.+
T Consensus 139 ~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l------------------ 200 (460)
T PTZ00327 139 AVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFV------------------ 200 (460)
T ss_pred hhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHH------------------
Confidence 999999999999997 8999999999999999975 789999998731 1122222222211
Q ss_pred EEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCce
Q psy12559 125 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKF 204 (610)
Q Consensus 125 g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~ 204 (610)
+.. ....
T Consensus 201 -----------------------------------------------------------------------~~~--~~~~ 207 (460)
T PTZ00327 201 -----------------------------------------------------------------------KGT--IADN 207 (460)
T ss_pred -----------------------------------------------------------------------Hhh--ccCC
Confidence 000 1135
Q ss_pred eEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeC--------C-cc
Q psy12559 205 TPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK--------F-GQ 275 (610)
Q Consensus 205 ~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~--------~-G~ 275 (610)
.|++++||++|.|++.|+++|.+.+|.|... .+.|+.++|..++... + |.
T Consensus 208 ~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~---------------------~~~p~r~~Idr~F~V~~~g~~~~~~~Gt 266 (460)
T PTZ00327 208 APIIPISAQLKYNIDVVLEYICTQIPIPKRD---------------------LTSPPRMIVIRSFDVNKPGEDIENLKGG 266 (460)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHhhCCCCCCC---------------------CCCCcEEEEEEEEeecccCCcccCCceE
Confidence 6888889999999999999999999987421 5678888888776442 2 88
Q ss_pred EEEEEEEeceecCCCEEEecCCC-------------eEEEeceEEEeccCcccccCcccCCCEEEEc-----CC---Ccc
Q psy12559 276 LTYMRCYQGKLRKGEMIYNVRTD-------------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCA 334 (610)
Q Consensus 276 i~~~RV~sG~l~~g~~v~~~~~~-------------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~ 334 (610)
++.|+|.+|++++||+|.+.+.+ ...+|++|.. ...++++|.|||.+++. ++ ++.
T Consensus 267 Vv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~~~v~~a~aG~~vai~l~ld~~v~~~dv~ 342 (460)
T PTZ00327 267 VAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----ENNELQYAVPGGLIGVGTTIDPTLTRADRL 342 (460)
T ss_pred EEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CCeECCEEcCCCEEEEEeccCCCcchhhcc
Confidence 99999999999999999998754 2457888873 46789999999999884 44 567
Q ss_pred cCceEe
Q psy12559 335 SGDTFV 340 (610)
Q Consensus 335 ~Gdtl~ 340 (610)
.|++|+
T Consensus 343 rG~Vl~ 348 (460)
T PTZ00327 343 VGQVLG 348 (460)
T ss_pred cccEEE
Confidence 899999
No 45
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.97 E-value=3.4e-29 Score=271.97 Aligned_cols=229 Identities=24% Similarity=0.278 Sum_probs=176.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||+|||||+++...|.|++++++|||||||.+|..++.++++.+|+||+||||.+|++.||+.++..+...++|
T Consensus 82 ~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~ 161 (474)
T PRK05124 82 VDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIK 161 (474)
T ss_pred ccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.|+++||||+...+ .+.+..+.+.+.
T Consensus 162 ~iIvvvNKiD~~~~~-~~~~~~i~~~l~---------------------------------------------------- 188 (474)
T PRK05124 162 HLVVAVNKMDLVDYS-EEVFERIREDYL---------------------------------------------------- 188 (474)
T ss_pred ceEEEEEeeccccch-hHHHHHHHHHHH----------------------------------------------------
Confidence 57899999987543 222222222110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------HHHHHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLD 227 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------Lld~i~~ 227 (610)
..+.. .......|+++.||++|.|+.. |+++| +
T Consensus 189 ---------------------------------~~~~~-~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~ 233 (474)
T PRK05124 189 ---------------------------------TFAEQ-LPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-E 233 (474)
T ss_pred ---------------------------------HHHHh-cCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-h
Confidence 00000 0001235677779999988754 55544 4
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
.+|.|... .+.|+.+.|..++...+ ..-..|||.+|+|+.||+|++.+.+...+|++|
T Consensus 234 ~i~~~~~~---------------------~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI 292 (474)
T PRK05124 234 TVDIQRVV---------------------DAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARI 292 (474)
T ss_pred hcCCCCCC---------------------CCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEE
Confidence 55554311 56788888877765333 222569999999999999999999988999999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC---CcccCceEecCC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV---DCASGDTFVTDK 343 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl---~~~~Gdtl~~~~ 343 (610)
... ..++++|.|||.+++..- +++.||+|| ++
T Consensus 293 ~~~----~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~-~~ 327 (474)
T PRK05124 293 VTF----DGDLEEAFAGEAITLVLEDEIDISRGDLLV-AA 327 (474)
T ss_pred EEc----CccccCcCCCCEEEEEeCCccccCCccEEE-CC
Confidence 844 346899999999987542 688999999 44
No 46
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-29 Score=243.33 Aligned_cols=227 Identities=30% Similarity=0.392 Sum_probs=181.4
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
|..|+||+|||||.++-+.++..++.+-.+|||||.||...|+.+...+|+|||||+|.+|.++||+.++-.+++.++|.
T Consensus 51 d~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ 130 (394)
T COG0050 51 DNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPY 130 (394)
T ss_pred ccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcE
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E-EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 82 I-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 82 i-~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
| +|+||+|.....
T Consensus 131 ivvflnK~Dmvdd~------------------------------------------------------------------ 144 (394)
T COG0050 131 IVVFLNKVDMVDDE------------------------------------------------------------------ 144 (394)
T ss_pred EEEEEecccccCcH------------------------------------------------------------------
Confidence 5 899999987411
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCC--------ccHHHHHHHHHHhCCCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKN--------KGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~--------~gv~~Lld~i~~~lPsp 232 (610)
+|+|.+.+.--+|++.| --.+.-.|+..|||++- .-|.+||+++.+|+|.|
T Consensus 145 ---ellelVemEvreLLs~y------------------~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 145 ---ELLELVEMEVRELLSEY------------------GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred ---HHHHHHHHHHHHHHHHc------------------CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 12222222222233333 12234578888888763 23678999999999999
Q ss_pred CCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC--eEEEeceEEEe
Q psy12559 233 GEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVRL 309 (610)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~i~~~ 309 (610)
... .+.||.+.|-.++...+ |++++|||-+|+|+.|+.+.+..-. ++..+..+..
T Consensus 204 er~---------------------~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvem- 261 (394)
T COG0050 204 ERD---------------------IDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEM- 261 (394)
T ss_pred CCc---------------------ccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHH-
Confidence 632 78999999999998877 9999999999999999999987543 2223443321
Q ss_pred ccCcccccCcccCCCEEE--EcCC---CcccCceEe
Q psy12559 310 HSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFV 340 (610)
Q Consensus 310 ~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~ 340 (610)
-++..++..|||-++ +.|. ++..|.+|+
T Consensus 262 ---frk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 262 ---FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred ---HHHHHhccccCCCcceEEEeccccceecceEee
Confidence 255678899999886 4666 788899998
No 47
>KOG0460|consensus
Probab=99.97 E-value=8.2e-30 Score=250.11 Aligned_cols=229 Identities=29% Similarity=0.404 Sum_probs=184.9
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
|.-|+|+.|||||.++.+.++...+.+--+|||||.||...|+.+....|||||||.|.+|..+||++++-.|++-|++.
T Consensus 93 D~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ 172 (449)
T KOG0460|consen 93 DKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKH 172 (449)
T ss_pred hcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCce
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred E-EEEecccCCC-CCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 82 I-AFINKLDRLG-ADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 82 i-~~iNKiDr~~-~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
| +||||.|... .+.-+.++
T Consensus 173 ivvfiNKvD~V~d~e~leLVE----------------------------------------------------------- 193 (449)
T KOG0460|consen 173 IVVFINKVDLVDDPEMLELVE----------------------------------------------------------- 193 (449)
T ss_pred EEEEEecccccCCHHHHHHHH-----------------------------------------------------------
Confidence 5 8999999872 11111110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccC-------Ccc---HHHHHHHHHHhC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALK-------NKG---VQTLLDAVLDYL 229 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~-------~~g---v~~Lld~i~~~l 229 (610)
-|+++.|...--.+.-.||++|||+- ..| |..|||++-+|+
T Consensus 194 -----------------------------mE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 194 -----------------------------MEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred -----------------------------HHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 01111122112234558999999863 233 677999999999
Q ss_pred CCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeE--EEeceE
Q psy12559 230 PNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK--VRVSRL 306 (610)
Q Consensus 230 Psp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~--~~v~~i 306 (610)
|.|.. +.+.||++.|-.++..++ |+++.||+.+|+|++|+++.+...++. ..|+.|
T Consensus 245 p~P~R---------------------~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgi 303 (449)
T KOG0460|consen 245 PTPER---------------------DLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGI 303 (449)
T ss_pred CCccc---------------------ccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehH
Confidence 99952 278999999999999988 999999999999999999998765543 445555
Q ss_pred EEeccCcccccCcccCCCEEE--EcCC---CcccCceEecCCC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFVTDKN 344 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~~~~~ 344 (610)
..+ +..+++|.|||-++ +.|+ +++.|.+++ .+.
T Consensus 304 emF----~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~-~pG 341 (449)
T KOG0460|consen 304 EMF----RKSLDEAQAGDNLGALLRGIKREDVKRGMVLA-KPG 341 (449)
T ss_pred HHH----HHHHHhcccccceehhhhcCCHHHHhcccEEe-cCC
Confidence 422 56789999999987 4787 789999999 443
No 48
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=1.5e-28 Score=265.65 Aligned_cols=225 Identities=24% Similarity=0.301 Sum_probs=182.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC---cchhhHHHHHHHHhc
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---VQSQTLTVNRQMKRY 77 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G---v~~qt~~v~~~~~~~ 77 (610)
||.+++||+||+|++.+...|.|+++.++|+|||||.+|...+..+++.+|++|+|+|+.+| ...||..++..+...
T Consensus 60 ~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~ 139 (426)
T TIGR00483 60 MDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL 139 (426)
T ss_pred hccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc
Confidence 58899999999999999999999999999999999999999999999999999999999999 889999888888777
Q ss_pred CCC-eEEEEecccCCCCCHH---HHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchh
Q psy12559 78 DVP-CIAFINKLDRLGADPY---RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPAD 153 (610)
Q Consensus 78 ~ip-~i~~iNKiDr~~~~~~---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (610)
+++ +|+++||||+...+.+ +..+++++.+
T Consensus 140 ~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~----------------------------------------------- 172 (426)
T TIGR00483 140 GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLI----------------------------------------------- 172 (426)
T ss_pred CCCeEEEEEEChhccCccHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 765 6789999998753321 1111211111
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------H
Q psy12559 154 LKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------L 221 (610)
Q Consensus 154 ~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------L 221 (610)
+..-.....+|++..||++|.|+.. |
T Consensus 173 ------------------------------------------~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l 210 (426)
T TIGR00483 173 ------------------------------------------KKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTL 210 (426)
T ss_pred ------------------------------------------HHcCCCcccceEEEeeccccccccccccCCccccchHH
Confidence 1100111235677779999988864 8
Q ss_pred HHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeE
Q psy12559 222 LDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK 300 (610)
Q Consensus 222 ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~ 300 (610)
+++|.+ +|.|... .++||.+.|..++..++ |+++.|||.+|+++.||.|.+.+.+..
T Consensus 211 ~~~l~~-~~~~~~~---------------------~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~ 268 (426)
T TIGR00483 211 LEALDA-LEPPEKP---------------------TDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVS 268 (426)
T ss_pred HHHHhc-CCCCCCc---------------------cCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcE
Confidence 899865 5544311 56899999999999988 999999999999999999999998888
Q ss_pred EEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 301 VRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 301 ~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
.+|++|... ..++++|.|||.+++ .|+ +++.|++|+
T Consensus 269 ~~VksI~~~----~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 269 GEVKSIEMH----HEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred EEEEEEEEC----CcccCEEcCCCEEEEEECCCChhhcccceEEe
Confidence 899999833 467899999999986 665 678999999
No 49
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.96 E-value=2.4e-28 Score=272.00 Aligned_cols=223 Identities=23% Similarity=0.303 Sum_probs=183.4
Q ss_pred CCChHHHHHhcceeecceeEEEe-cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~-~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
+|..++|++|||||+.....+.+ ++..++|||||||.+|...+.+++..+|++++|||+.+|+.+||++++..+...++
T Consensus 25 ~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi 104 (614)
T PRK10512 25 ADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN 104 (614)
T ss_pred CccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 47889999999999999888866 46789999999999999999999999999999999999999999999999999999
Q ss_pred Ce-EEEEecccCCCC-CHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHH
Q psy12559 80 PC-IAFINKLDRLGA-DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKE 157 (610)
Q Consensus 80 p~-i~~iNKiDr~~~-~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (610)
|. |+++||||+... .++.+.+++++.+
T Consensus 105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l--------------------------------------------------- 133 (614)
T PRK10512 105 PMLTVALTKADRVDEARIAEVRRQVKAVL--------------------------------------------------- 133 (614)
T ss_pred CeEEEEEECCccCCHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 96 699999998631 1122222222111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccc
Q psy12559 158 AESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTN 237 (610)
Q Consensus 158 ~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~ 237 (610)
... .....|+++.||++|.|++.|++.|.++.+ |...
T Consensus 134 --------------------------------------~~~--~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~-~~~~-- 170 (614)
T PRK10512 134 --------------------------------------REY--GFAEAKLFVTAATEGRGIDALREHLLQLPE-REHA-- 170 (614)
T ss_pred --------------------------------------Hhc--CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc-cccC--
Confidence 000 012367888899999999999999987643 3211
Q ss_pred cccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccc
Q psy12559 238 YAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMED 316 (610)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~ 316 (610)
.++||.++|..++..++ |+++.|+|.+|+++.||+|.+.+.+...+|++|.. +..+
T Consensus 171 -------------------~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~----~~~~ 227 (614)
T PRK10512 171 -------------------AQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHA----QNQP 227 (614)
T ss_pred -------------------cCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEec----CCcC
Confidence 46789999999998888 99999999999999999999998888889998873 3568
Q ss_pred cCcccCCCEEEE--cC-C---CcccCceEe
Q psy12559 317 VEEVLAGDIFAL--FG-V---DCASGDTFV 340 (610)
Q Consensus 317 v~~a~aGdiv~i--~g-l---~~~~Gdtl~ 340 (610)
+++|.||+.+++ .| + +++.||+|+
T Consensus 228 v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 228 TEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred CCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 999999999986 66 6 679999999
No 50
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.96 E-value=3.1e-27 Score=252.94 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=178.2
Q ss_pred CCChHHHHHhcceeecceeEEEec--------------------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK--------------------------DHNINIIDTPGHVDFTVEVERALRVLDGAI 54 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~--------------------------~~~inlIDTPGh~dF~~ev~~al~~~D~ai 54 (610)
+|+.++|++||+|++++...+.|. .++++|+|||||.+|..++.++++.+|+++
T Consensus 34 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~l 113 (411)
T PRK04000 34 TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAI 113 (411)
T ss_pred cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEE
Confidence 588999999999999987766552 268999999999999999999999999999
Q ss_pred EEEecCCCc-chhhHHHHHHHHhcCCC-eEEEEecccCCCCCH-HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEccc
Q psy12559 55 LVLCAVGGV-QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 131 (610)
Q Consensus 55 lVvDa~~Gv-~~qt~~v~~~~~~~~ip-~i~~iNKiDr~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~ 131 (610)
+|+|+.+|+ ..||..++..+...+++ .++++||+|+...+. .+.+++++..+
T Consensus 114 lVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l------------------------- 168 (411)
T PRK04000 114 LVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFV------------------------- 168 (411)
T ss_pred EEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHh-------------------------
Confidence 999999998 89999999999888875 688999999864221 11111111111
Q ss_pred ceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEecc
Q psy12559 132 RKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGT 211 (610)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~S 211 (610)
+.. ....+|++..|
T Consensus 169 ----------------------------------------------------------------~~~--~~~~~~ii~vS 182 (411)
T PRK04000 169 ----------------------------------------------------------------KGT--VAENAPIIPVS 182 (411)
T ss_pred ----------------------------------------------------------------ccc--cCCCCeEEEEE
Confidence 000 01236788889
Q ss_pred ccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeC--------C-ccEEEEEEE
Q psy12559 212 ALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK--------F-GQLTYMRCY 282 (610)
Q Consensus 212 a~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~--------~-G~i~~~RV~ 282 (610)
|++|.|++.|++.|.+++|.|... .+.|+.+.|..++... + |.++.|||.
T Consensus 183 A~~g~gI~~L~~~L~~~l~~~~~~---------------------~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~ 241 (411)
T PRK04000 183 ALHKVNIDALIEAIEEEIPTPERD---------------------LDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLI 241 (411)
T ss_pred CCCCcCHHHHHHHHHHhCCCCCCC---------------------CCCCceEEEEeeeeecCCCccccCCcceEEEEEEE
Confidence 999999999999999999877421 5688999999887532 3 669999999
Q ss_pred eceecCCCEEEecCCCe------------EEEeceEEEeccCcccccCcccCCCEEEEc-----CC---CcccCceEecC
Q psy12559 283 QGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFVTD 342 (610)
Q Consensus 283 sG~l~~g~~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~~Gdtl~~~ 342 (610)
+|++++||.|.+.+.++ ..+|++|.. ...++++|.|||.+++. ++ ++..|++|+ +
T Consensus 242 ~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~----~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~-~ 316 (411)
T PRK04000 242 QGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA----GGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG-K 316 (411)
T ss_pred eCEEecCCEEEEcCCcceecccccccccceEEEeEEEE----CCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE-c
Confidence 99999999999987653 357888873 35679999999998874 44 578899999 4
Q ss_pred CC
Q psy12559 343 KN 344 (610)
Q Consensus 343 ~~ 344 (610)
+.
T Consensus 317 ~~ 318 (411)
T PRK04000 317 PG 318 (411)
T ss_pred CC
Confidence 43
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=5.3e-27 Score=262.34 Aligned_cols=271 Identities=20% Similarity=0.289 Sum_probs=210.6
Q ss_pred HHHhcceeecceeEEEec----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE
Q psy12559 7 ERQRGITIQSAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 82 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~~----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i 82 (610)
+..+|+|+......+.|. ++.++|||||||.+|...+.++++.+|++|+|||+.+|++.||...|+++...++|+|
T Consensus 272 ~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI 351 (742)
T CHL00189 272 KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII 351 (742)
T ss_pred ccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE
Confidence 345899998888777774 5899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHH
Q psy12559 83 AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKR 162 (610)
Q Consensus 83 ~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 162 (610)
+++||||+...+++++.+++... +.
T Consensus 352 VViNKiDl~~~~~e~v~~eL~~~-~l------------------------------------------------------ 376 (742)
T CHL00189 352 VAINKIDKANANTERIKQQLAKY-NL------------------------------------------------------ 376 (742)
T ss_pred EEEECCCccccCHHHHHHHHHHh-cc------------------------------------------------------
Confidence 99999999876655444433210 00
Q ss_pred HHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc
Q psy12559 163 QELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN 242 (610)
Q Consensus 163 ~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~ 242 (610)
-.+ ..+..+|++++||++|.|++.|+++|..+.+.+.
T Consensus 377 ------------------------l~e----------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~--------- 413 (742)
T CHL00189 377 ------------------------IPE----------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED--------- 413 (742)
T ss_pred ------------------------chH----------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc---------
Confidence 000 0123578999999999999999999987643211
Q ss_pred CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCccc
Q psy12559 243 GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVL 321 (610)
Q Consensus 243 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~ 321 (610)
+.++ ++.|+.++|+++..+++ |.++++||++|+|+.||.|++.+ +.++++.+.+....++++|.
T Consensus 414 --------lk~~--~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~ 478 (742)
T CHL00189 414 --------LKAD--PTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLAT 478 (742)
T ss_pred --------ccCC--CCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEc
Confidence 0112 67889999999999988 99999999999999999999876 34667777778888999999
Q ss_pred CCCEEEEcCC--CcccCceEecCCCC--------------------ccccccc-----cCCCceEEEEEEeCCCcCHHHH
Q psy12559 322 AGDIFALFGV--DCASGDTFVTDKNN--------------------SISLESI-----YVADPVVSMSIKAVNNKDRDNF 374 (610)
Q Consensus 322 aGdiv~i~gl--~~~~Gdtl~~~~~~--------------------~~~~~~~-----~~~~Pv~~~aiep~~~~d~~kL 374 (610)
||++|+|.|+ ...+||+|..-.+. ...+... .--.+.+.+-|.+...+-.+.+
T Consensus 479 pgdiV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi 558 (742)
T CHL00189 479 PSSVVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRITLSTTKTINKKDNKKQINLIIKTDTQGSIEAI 558 (742)
T ss_pred CCCceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhcccchHHHHHHhhhcCCceeeEEEEeCCcchHHHH
Confidence 9999999999 45789999731110 0000000 0124678888999999999999
Q ss_pred HHHHHHHHhcCCeeEE
Q psy12559 375 SKAVQRFTKEDPTFHF 390 (610)
Q Consensus 375 ~~~L~~L~~eDpsl~~ 390 (610)
..+|.++..+.-.+.+
T Consensus 559 ~~~l~~~~~~~v~i~i 574 (742)
T CHL00189 559 INSISQIPQKKVQLNI 574 (742)
T ss_pred HHHHHhcCCCcEEEEE
Confidence 9999988655434433
No 52
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=8.8e-27 Score=249.64 Aligned_cols=226 Identities=21% Similarity=0.281 Sum_probs=177.1
Q ss_pred CCChHHHHHhcceeecceeEEEec--------------------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK--------------------------DHNINIIDTPGHVDFTVEVERALRVLDGAI 54 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~--------------------------~~~inlIDTPGh~dF~~ev~~al~~~D~ai 54 (610)
+|..++|++||+|++++...+.|. ++.++|+|||||.+|..++.++++.+|+++
T Consensus 29 ~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aI 108 (406)
T TIGR03680 29 TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAL 108 (406)
T ss_pred cccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEE
Confidence 488999999999999997766532 468999999999999999999999999999
Q ss_pred EEEecCCCc-chhhHHHHHHHHhcCCC-eEEEEecccCCCCCH-HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEccc
Q psy12559 55 LVLCAVGGV-QSQTLTVNRQMKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQ 131 (610)
Q Consensus 55 lVvDa~~Gv-~~qt~~v~~~~~~~~ip-~i~~iNKiDr~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~ 131 (610)
+|||+.+|+ +.||++++..+...+++ .++++||||+...+. .+.++++++.+
T Consensus 109 lVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l------------------------- 163 (406)
T TIGR03680 109 LVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFV------------------------- 163 (406)
T ss_pred EEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhh-------------------------
Confidence 999999999 99999999999888876 689999999874221 11111111100
Q ss_pred ceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEecc
Q psy12559 132 RKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGT 211 (610)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~S 211 (610)
+.. ....+|+++.|
T Consensus 164 ----------------------------------------------------------------~~~--~~~~~~ii~vS 177 (406)
T TIGR03680 164 ----------------------------------------------------------------KGT--VAENAPIIPVS 177 (406)
T ss_pred ----------------------------------------------------------------hhc--ccCCCeEEEEE
Confidence 000 01236788889
Q ss_pred ccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC---------ccEEEEEEE
Q psy12559 212 ALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF---------GQLTYMRCY 282 (610)
Q Consensus 212 a~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~---------G~i~~~RV~ 282 (610)
|++|.|++.|+++|..++|.|... .+.|+.++|..++...+ |.+..|||.
T Consensus 178 A~~g~gi~~L~e~L~~~l~~~~~~---------------------~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~ 236 (406)
T TIGR03680 178 ALHNANIDALLEAIEKFIPTPERD---------------------LDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLI 236 (406)
T ss_pred CCCCCChHHHHHHHHHhCCCCCCC---------------------CCCCcEEEEEEEEeecCCCccccCCceeEEEEEEE
Confidence 999999999999999999877321 56789999998885432 568999999
Q ss_pred eceecCCCEEEecCCCe------------EEEeceEEEeccCcccccCcccCCCEEEEc-----CC---CcccCceEecC
Q psy12559 283 QGKLRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFVTD 342 (610)
Q Consensus 283 sG~l~~g~~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~~Gdtl~~~ 342 (610)
+|+|++||.|.+.+.+. ..+|++|.. ...++++|.|||.+++. ++ ++..|++|+ +
T Consensus 237 ~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~----~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~-~ 311 (406)
T TIGR03680 237 QGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA----GGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVG-K 311 (406)
T ss_pred eCEEeCCCEEEEccCccccccccccccccceEEeEEEE----CCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEE-c
Confidence 99999999999987642 347888873 35789999999999972 45 568899999 4
Q ss_pred C
Q psy12559 343 K 343 (610)
Q Consensus 343 ~ 343 (610)
+
T Consensus 312 ~ 312 (406)
T TIGR03680 312 P 312 (406)
T ss_pred C
Confidence 4
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.3e-27 Score=239.23 Aligned_cols=222 Identities=27% Similarity=0.371 Sum_probs=188.6
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|..|+|++|||||+....++...++.+.|||+|||.||...+..++...|.|++|||+.+|+.+||.+++..+...+++
T Consensus 25 ~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~ 104 (447)
T COG3276 25 TDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK 104 (447)
T ss_pred cccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-EEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 C-IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~-i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
. |+++||+|+... .++-+.+++.++
T Consensus 105 ~giivltk~D~~d~--~r~e~~i~~Il~---------------------------------------------------- 130 (447)
T COG3276 105 NGIIVLTKADRVDE--ARIEQKIKQILA---------------------------------------------------- 130 (447)
T ss_pred ceEEEEeccccccH--HHHHHHHHHHHh----------------------------------------------------
Confidence 9 899999998732 122222222221
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
.+ . -...|+|..|+.+|.||++|-+.|.+.+- +.++
T Consensus 131 --------~l--------------------------~-----l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~e~---- 166 (447)
T COG3276 131 --------DL--------------------------S-----LANAKIFKTSAKTGRGIEELKNELIDLLE-EIER---- 166 (447)
T ss_pred --------hc--------------------------c-----cccccccccccccCCCHHHHHHHHHHhhh-hhhh----
Confidence 00 0 12256677899999999999999988764 2111
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
+.+.||..+|...+...+ |+++.|.++||+++.||++++.+.|+..+|++|. ..-.+++
T Consensus 167 ----------------d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq----~~d~d~~ 226 (447)
T COG3276 167 ----------------DEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQ----AHDVDVE 226 (447)
T ss_pred ----------------ccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeee----ecCcchh
Confidence 278999999999999988 9999999999999999999999999999999998 3456789
Q ss_pred cccCCCEEEE--cCC---CcccCceEe
Q psy12559 319 EVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 319 ~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
+|.||+.|++ .|. ++..|+.|.
T Consensus 227 ~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 227 EAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred hccccceeeeecCCCCHHHhhcccEec
Confidence 9999999985 565 578899998
No 54
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=261.04 Aligned_cols=229 Identities=22% Similarity=0.266 Sum_probs=174.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||..++||+||+||+++...+.|++++++|||||||.+|...+..++..+|++++|||+.+|++.||++++..+...++|
T Consensus 79 ~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~ 158 (632)
T PRK05506 79 VDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIR 158 (632)
T ss_pred ccCCHHHHhCCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+++||||+...+. +.++.+...+
T Consensus 159 ~iivvvNK~D~~~~~~-~~~~~i~~~i----------------------------------------------------- 184 (632)
T PRK05506 159 HVVLAVNKMDLVDYDQ-EVFDEIVADY----------------------------------------------------- 184 (632)
T ss_pred eEEEEEEecccccchh-HHHHHHHHHH-----------------------------------------------------
Confidence 567999999874221 1121111100
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH------------HHHHHHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLD 227 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~Lld~i~~ 227 (610)
...+++ . ....+|+++.||++|.|+. .|+++|..
T Consensus 185 --------------------------------~~~~~~-~-~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~ 230 (632)
T PRK05506 185 --------------------------------RAFAAK-L-GLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLET 230 (632)
T ss_pred --------------------------------HHHHHH-c-CCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhc
Confidence 000000 0 0022456677999999986 47776654
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
+|.|... .++||.+.|..++...+ +.-..|+|.+|+|++||+|.+.+.+...+|++|
T Consensus 231 -~~~~~~~---------------------~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI 288 (632)
T PRK05506 231 -VEIASDR---------------------NLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRI 288 (632)
T ss_pred -CCCCCCc---------------------CCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEE
Confidence 3433211 46788887777665432 233569999999999999999998888999999
Q ss_pred EEeccCcccccCcccCCCEEEEcCC---CcccCceEecCCC
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFGV---DCASGDTFVTDKN 344 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~gl---~~~~Gdtl~~~~~ 344 (610)
... ..++++|.|||.+++.-- +++.|++|| +++
T Consensus 289 ~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~-~~~ 324 (632)
T PRK05506 289 VTP----DGDLDEAFAGQAVTLTLADEIDISRGDMLA-RAD 324 (632)
T ss_pred EEC----CceeCEEcCCCeEEEEecCccccCCccEEe-cCC
Confidence 833 446899999999987432 678999999 444
No 55
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.94 E-value=3.7e-26 Score=253.88 Aligned_cols=226 Identities=24% Similarity=0.293 Sum_probs=183.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|..++|++||||++.....+.++++.++|||||||.+|...+..++..+|++++|||+.+|+..||.+++..+...++|
T Consensus 25 ~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~ 104 (581)
T TIGR00475 25 ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIP 104 (581)
T ss_pred CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEecccCCCCC-HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHH
Q psy12559 81 -CIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEA 158 (610)
Q Consensus 81 -~i~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (610)
.|+++||||+...+ ++...+++++.
T Consensus 105 ~iIVVlNK~Dlv~~~~~~~~~~ei~~~----------------------------------------------------- 131 (581)
T TIGR00475 105 HTIVVITKADRVNEEEIKRTEMFMKQI----------------------------------------------------- 131 (581)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHH-----------------------------------------------------
Confidence 89999999986421 11111111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccc
Q psy12559 159 ESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY 238 (610)
Q Consensus 159 ~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~ 238 (610)
+.. .......|++..||++|.|++.+.+.|...++.....
T Consensus 132 ------------------------------------l~~-~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~--- 171 (581)
T TIGR00475 132 ------------------------------------LNS-YIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIK--- 171 (581)
T ss_pred ------------------------------------HHH-hCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCc---
Confidence 100 0001135778889999999999999988776543211
Q ss_pred ccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCccccc
Q psy12559 239 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDV 317 (610)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v 317 (610)
. .++||.+.|..++..++ |+++.|+|.+|+++.||+|.+.+.+...+|++|.. +..++
T Consensus 172 ---------------~--~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~----~~~~v 230 (581)
T TIGR00475 172 ---------------R--IQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQA----QNQDV 230 (581)
T ss_pred ---------------C--cCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEE----CCccC
Confidence 0 46899999999998887 99999999999999999999999998999999973 35679
Q ss_pred CcccCCCEEEE--cCC---CcccCceEe
Q psy12559 318 EEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 318 ~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
++|.||+.+++ .|+ +++.|.+++
T Consensus 231 ~~a~aG~rval~L~~i~~~~i~rG~~~~ 258 (581)
T TIGR00475 231 EIAYAGQRIALNLMDVEPESLKRGLLIL 258 (581)
T ss_pred CEEECCCEEEEEeCCCCHHHcCCceEEc
Confidence 99999999985 566 478895555
No 56
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=228.83 Aligned_cols=284 Identities=21% Similarity=0.236 Sum_probs=204.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|-++.|||.||||+-++..|....++|.+.|||||..|...|..+.+-||.||++|||.+|+..||+++--.+...||+
T Consensus 61 vDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIr 140 (431)
T COG2895 61 VDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIR 140 (431)
T ss_pred hhhhHHHHhcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCc
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eE-EEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CI-AFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i-~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.+ +.|||||+.+.+ ++.++.|+.-+..
T Consensus 141 hvvvAVNKmDLvdy~-e~~F~~I~~dy~~--------------------------------------------------- 168 (431)
T COG2895 141 HVVVAVNKMDLVDYS-EEVFEAIVADYLA--------------------------------------------------- 168 (431)
T ss_pred EEEEEEeeecccccC-HHHHHHHHHHHHH---------------------------------------------------
Confidence 85 899999998765 3344444332110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH------------HHHHHHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ------------TLLDAVLD 227 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~------------~Lld~i~~ 227 (610)
+.+.+ .+....++|+ ||+.|.+|- .||+.+-.
T Consensus 169 -----fa~~L----------------------------~~~~~~~IPi---SAl~GDNV~~~s~~mpWY~GptLLe~LE~ 212 (431)
T COG2895 169 -----FAAQL----------------------------GLKDVRFIPI---SALLGDNVVSKSENMPWYKGPTLLEILET 212 (431)
T ss_pred -----HHHHc----------------------------CCCcceEEec---hhccCCcccccccCCCcccCccHHHHHhh
Confidence 00000 0011133444 666665542 23333211
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
.- ...+ ...+||.+.|--+..-.. -+---|+|-||++++||.|.+.++|+..+|++|
T Consensus 213 v~---------------------i~~~-~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~I 270 (431)
T COG2895 213 VE---------------------IADD-RSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRI 270 (431)
T ss_pred cc---------------------cccc-ccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEE
Confidence 11 1000 145567766655543221 233357899999999999999999999999999
Q ss_pred EEeccCcccccCcccCCCEEEEcC---CCcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHh
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALFG---VDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTK 383 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~g---l~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~ 383 (610)
..+.|. .++|.||+-+.+.= +++..||.|+ ..+.++. ..-.+..-++++.=+|..++..-+|..+-++...
T Consensus 271 vt~dg~----~~~A~aG~aVtl~L~deidisRGd~i~-~~~~~~~-~~~~f~A~vvWm~~~pl~pGr~Y~lK~~t~~v~a 344 (431)
T COG2895 271 VTFDGE----LAQASAGEAVTLVLADEIDISRGDLIV-AADAPPA-VADAFDADVVWMDEEPLLPGRSYDLKIATRTVRA 344 (431)
T ss_pred eccCCc----hhhccCCceEEEEEcceeecccCcEEE-ccCCCcc-hhhhcceeEEEecCCCCCCCceEEEEecceEEEE
Confidence 988664 67899999998753 3789999999 4443333 3445566799999999888887777666666555
Q ss_pred cCCeeEEEEcCCCCcEE
Q psy12559 384 EDPTFHFFYDPESKETL 400 (610)
Q Consensus 384 eDpsl~~~~d~etge~i 400 (610)
.-..++...|-.|.+..
T Consensus 345 ~V~~i~~~ldvntl~~~ 361 (431)
T COG2895 345 RVEEIKHQLDVNTLEQE 361 (431)
T ss_pred EeeeeEEEEeccccccc
Confidence 55666666665555444
No 57
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=1.2e-26 Score=223.12 Aligned_cols=102 Identities=36% Similarity=0.509 Sum_probs=93.5
Q ss_pred CChHHHHHhcceeecceeEEE--ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 2 DSMELERQRGITIQSAATYTL--WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~--~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
|..++|++||+|++++...+. ++++.++|||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++...++
T Consensus 44 ~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~ 123 (188)
T PF00009_consen 44 DKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGI 123 (188)
T ss_dssp HSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-
T ss_pred cccchhhhcccccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccccccccccccccccc
Confidence 678999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCCCHHHHHHHHH
Q psy12559 80 PCIAFINKLDRLGADPYRVINQMR 103 (610)
Q Consensus 80 p~i~~iNKiDr~~~~~~~~~~~i~ 103 (610)
|+|+|+||||+...++.+.+++++
T Consensus 124 p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 124 PIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred ceEEeeeeccchhhhHHHHHHHHH
Confidence 999999999998555555554444
No 58
>KOG0458|consensus
Probab=99.93 E-value=3.3e-25 Score=232.89 Aligned_cols=226 Identities=23% Similarity=0.298 Sum_probs=178.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
+|...+|||||+|++.+..+|+.+.+.++|||+|||-||..+|+.+...+|.|||||||+-|. ..||+++...
T Consensus 230 LDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~l 309 (603)
T KOG0458|consen 230 LDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALL 309 (603)
T ss_pred eccchhhhhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999998663 6899999999
Q ss_pred HHhcCCCe-EEEEecccCCCCC---HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeec
Q psy12559 74 MKRYDVPC-IAFINKLDRLGAD---PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEE 149 (610)
Q Consensus 74 ~~~~~ip~-i~~iNKiDr~~~~---~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~ 149 (610)
++..|+.- |++|||||..+.+ |+++...+..-|...+
T Consensus 310 lr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~--------------------------------------- 350 (603)
T KOG0458|consen 310 LRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESC--------------------------------------- 350 (603)
T ss_pred HHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence 99999987 6899999998765 3333333333221100
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH----------
Q psy12559 150 IPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ---------- 219 (610)
Q Consensus 150 ~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~---------- 219 (610)
.+.. ..-+|+|+ |++.|.|+-
T Consensus 351 -----------------------------------gf~e-----------s~v~FIPi---SGl~GeNL~k~~~~~~l~~ 381 (603)
T KOG0458|consen 351 -----------------------------------GFKE-----------SSVKFIPI---SGLSGENLIKIEQENELSQ 381 (603)
T ss_pred -----------------------------------Cccc-----------CCcceEec---ccccCCcccccccchhhhh
Confidence 0000 01145665 666666542
Q ss_pred -----HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEE
Q psy12559 220 -----TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIY 293 (610)
Q Consensus 220 -----~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~ 293 (610)
.||+.|-. +-.|.. ..+.||++-|..++..+. |..++|||.||.+.+||+||
T Consensus 382 WY~Gp~LL~~id~-~~~p~~---------------------~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~ 439 (603)
T KOG0458|consen 382 WYKGPTLLSQIDS-FKIPER---------------------PIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLY 439 (603)
T ss_pred hhcCChHHHHHhh-ccCCCC---------------------cccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEE
Confidence 25666655 333321 145699999999999977 88899999999999999999
Q ss_pred ecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 294 NVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 294 ~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
+.+......|..|. .+..+...+.|||-|.+ .|+ .+..||+++
T Consensus 440 i~~s~e~~~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 440 IMTSREDATVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred EecCcceEEEEeee----cCCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 99988888888887 44677888999999874 665 578999998
No 59
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.93 E-value=8.2e-25 Score=214.28 Aligned_cols=106 Identities=45% Similarity=0.618 Sum_probs=96.9
Q ss_pred CCChHHHHHhcceeecceeEEEec----------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK----------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~----------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v 70 (610)
||++++||+|||||+++.+++.|. ++++||||||||.||..++.++++.+|+||+|+|+.+|+..||+.+
T Consensus 38 ~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~ 117 (222)
T cd01885 38 MDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV 117 (222)
T ss_pred ccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH
Confidence 699999999999999999999987 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecccCC----CCCHHHHHHHHHHHh
Q psy12559 71 NRQMKRYDVPCIAFINKLDRL----GADPYRVINQMRQKV 106 (610)
Q Consensus 71 ~~~~~~~~ip~i~~iNKiDr~----~~~~~~~~~~i~~~l 106 (610)
|+++.+.++|+|+|+||||+. ..++++++..+++.+
T Consensus 118 l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii 157 (222)
T cd01885 118 LRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARII 157 (222)
T ss_pred HHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHH
Confidence 999999999999999999997 456666666655533
No 60
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.92 E-value=7.5e-26 Score=201.12 Aligned_cols=118 Identities=37% Similarity=0.552 Sum_probs=110.0
Q ss_pred ceeEEEEeecccce-eeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCc
Q psy12559 429 PKVAFKETLVQPFD-FDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCL 507 (610)
Q Consensus 429 p~V~yrEti~~~~~-~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl 507 (610)
|+|+|||||+++++ ..+.++++.|+.++|+.+.++++|++ +++|.|++++.++.+|++|++||++||++++++|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 88999999999999999999999986 779999999999999999999999999999999999
Q ss_pred cCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeec
Q psy12559 508 SGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKA 549 (610)
Q Consensus 508 ~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a 549 (610)
+||||+||+|+|.++.+|+++|++.+|+.|++.++++++.+|
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A 119 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKA 119 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999876654
No 61
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.92 E-value=1.3e-25 Score=197.11 Aligned_cols=113 Identities=20% Similarity=0.228 Sum_probs=101.8
Q ss_pred eEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCC
Q psy12559 431 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGS 510 (610)
Q Consensus 431 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~ 510 (610)
|+|||||+++++. ..++ +.++++|||+|+++++|+++ +.++.|.+++.++.+|++|++||++|++++|++||| ||
T Consensus 1 VaYRETI~~~~~~-~~~~-~~~~~~~~a~v~l~veP~~~--g~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-VEHI-EVPPNPFWATVGLRVEPLPR--GSGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-EEEE-ccCCCcEEEEEEEEEEECCC--CCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999999773 4444 45577889999999999975 568999999999999999999999999999999999 99
Q ss_pred ceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeee
Q psy12559 511 RVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIK 548 (610)
Q Consensus 511 pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~ 548 (610)
||+||+|+|.++.+|++||++++|++||++|+++++.+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~ 113 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKK 113 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998886644
No 62
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=5e-24 Score=205.30 Aligned_cols=91 Identities=32% Similarity=0.452 Sum_probs=88.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||+|++++...|.|++++++|||||||.+|..++.++++.+|+|++|||+.+|++.||+++|+.+.+.++|
T Consensus 40 ~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~ 119 (195)
T cd01884 40 IDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVP 119 (195)
T ss_pred ccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -eEEEEecccCC
Q psy12559 81 -CIAFINKLDRL 91 (610)
Q Consensus 81 -~i~~iNKiDr~ 91 (610)
.|+|+||||+.
T Consensus 120 ~iIvviNK~D~~ 131 (195)
T cd01884 120 YIVVFLNKADMV 131 (195)
T ss_pred cEEEEEeCCCCC
Confidence 56899999986
No 63
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-22 Score=212.75 Aligned_cols=268 Identities=24% Similarity=0.329 Sum_probs=196.8
Q ss_pred hcceeecceeEEEec---CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEe
Q psy12559 10 RGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFIN 86 (610)
Q Consensus 10 RgiTi~s~~~~~~~~---~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iN 86 (610)
=|||-...+..+.++ ...|+|||||||.-|+.--.|+..++|.||||||+.+|+.+||.+-+++++..++|+|+++|
T Consensus 36 GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiN 115 (509)
T COG0532 36 GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAIN 115 (509)
T ss_pred CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEe
Confidence 389999999999984 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHH
Q psy12559 87 KLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELI 166 (610)
Q Consensus 87 KiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 166 (610)
|||++.++++....++++. |..
T Consensus 116 KiDk~~~np~~v~~el~~~-gl~--------------------------------------------------------- 137 (509)
T COG0532 116 KIDKPEANPDKVKQELQEY-GLV--------------------------------------------------------- 137 (509)
T ss_pred cccCCCCCHHHHHHHHHHc-CCC---------------------------------------------------------
Confidence 9999999998888777653 211
Q ss_pred HHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCccc
Q psy12559 167 EHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQED 246 (610)
Q Consensus 167 e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~ 246 (610)
.+++ +..+.++.+||++|.|+++||++|.-.. +..
T Consensus 138 ---------------------~E~~----------gg~v~~VpvSA~tg~Gi~eLL~~ill~a----ev~---------- 172 (509)
T COG0532 138 ---------------------PEEW----------GGDVIFVPVSAKTGEGIDELLELILLLA----EVL---------- 172 (509)
T ss_pred ---------------------Hhhc----------CCceEEEEeeccCCCCHHHHHHHHHHHH----HHH----------
Confidence 1110 1124556669999999999999986422 110
Q ss_pred ceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCE
Q psy12559 247 KKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI 325 (610)
Q Consensus 247 ~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdi 325 (610)
.+..+ ++.+..+.|....-+++ |.++..-|+.|||+.||.|..... ..+|..++ -....+++.+.++--
T Consensus 173 ---elka~--~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~--~g~I~t~v---~~~~~~i~~a~ps~~ 242 (509)
T COG0532 173 ---ELKAN--PEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGE--YGRVRTMV---DDLGKPIKEAGPSKP 242 (509)
T ss_pred ---hhhcC--CCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccC--CCceEEee---hhcCCCccccCCCCC
Confidence 12222 78999999999999988 999999999999999999988653 23444444 344456677777766
Q ss_pred EEEcCC-Cc-ccCceEecCCCC---------------c--------c----ccccccCCCc--eEEEEEEeCCCcCHHHH
Q psy12559 326 FALFGV-DC-ASGDTFVTDKNN---------------S--------I----SLESIYVADP--VVSMSIKAVNNKDRDNF 374 (610)
Q Consensus 326 v~i~gl-~~-~~Gdtl~~~~~~---------------~--------~----~~~~~~~~~P--v~~~aiep~~~~d~~kL 374 (610)
+-+.|+ ++ ..||....-++. . . .+..+....+ .+.+-+.....+-.+.|
T Consensus 243 v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~viiKaDt~GSlEAL 322 (509)
T COG0532 243 VEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELASKKKGELEELIAEIKIRGELKELNVILKADTQGSLEAL 322 (509)
T ss_pred eEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhhhHHHHHHHHHHHhhhccCCcceecEEEEEcccchHHHH
Confidence 667776 32 345555421100 0 0 0111221223 37777888888888888
Q ss_pred HHHHHHHHhcCCeeEE
Q psy12559 375 SKAVQRFTKEDPTFHF 390 (610)
Q Consensus 375 ~~~L~~L~~eDpsl~~ 390 (610)
..+|+++.-..-.+++
T Consensus 323 ~~~L~~~~~~~v~~~i 338 (509)
T COG0532 323 KGSLKKLGVDEVKVRI 338 (509)
T ss_pred HHHHHhcCCCceEEEE
Confidence 8888887666544443
No 64
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-22 Score=197.97 Aligned_cols=276 Identities=22% Similarity=0.270 Sum_probs=192.1
Q ss_pred CCChHHHHHhcceeecceeEEEec--------------------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK--------------------------DHNINIIDTPGHVDFTVEVERALRVLDGAI 54 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~--------------------------~~~inlIDTPGh~dF~~ev~~al~~~D~ai 54 (610)
+|.+.+|.+|||||+..++....- -+++.|+|+|||.-++..|.++..+.|||+
T Consensus 35 T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAl 114 (415)
T COG5257 35 TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGAL 114 (415)
T ss_pred eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceE
Confidence 588999999999999998754320 157999999999999999999999999999
Q ss_pred EEEecCCC-cchhhHHHHHHHHhcCCCe-EEEEecccCCCCCHHHH---HHHHHHHhCCCeeEeeccccCCCCeeEEEEc
Q psy12559 55 LVLCAVGG-VQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRV---INQMRQKVGHNAAFLQIPIGLGSETKGIIDL 129 (610)
Q Consensus 55 lVvDa~~G-v~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~~~~~---~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~ 129 (610)
|||+|.+. .|+||++++-.+.-.++.- |++-||+|+.. .+++ |++|++-+.
T Consensus 115 LvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~Fvk---------------------- 170 (415)
T COG5257 115 LVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKEFVK---------------------- 170 (415)
T ss_pred EEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--HHHHHHHHHHHHHHhc----------------------
Confidence 99999986 4999999999998889887 58899999873 2333 233322211
Q ss_pred ccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEe
Q psy12559 130 IQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLV 209 (610)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~ 209 (610)
| ... .-.|+++
T Consensus 171 -----------------------------------------------------G--------------t~A--e~aPIIP 181 (415)
T COG5257 171 -----------------------------------------------------G--------------TVA--ENAPIIP 181 (415)
T ss_pred -----------------------------------------------------c--------------ccc--CCCceee
Confidence 1 111 1246667
Q ss_pred ccccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC---------ccEEEEE
Q psy12559 210 GTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF---------GQLTYMR 280 (610)
Q Consensus 210 ~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~---------G~i~~~R 280 (610)
.||.++.+++.|+++|.+++|.|.. +.+.|..++|.+.|..+. |-+.-|-
T Consensus 182 iSA~~~~NIDal~e~i~~~IptP~r---------------------d~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGs 240 (415)
T COG5257 182 ISAQHKANIDALIEAIEKYIPTPER---------------------DLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGS 240 (415)
T ss_pred ehhhhccCHHHHHHHHHHhCCCCcc---------------------CCCCCceEEEEeecccCCCCCCHHHccCceecce
Confidence 7999999999999999999999963 277888999999886532 4478899
Q ss_pred EEeceecCCCEEEecCC------CeEE---EeceEEEeccCcccccCcccCCCEEEE-cCC--CcccCceEecCCCCccc
Q psy12559 281 CYQGKLRKGEMIYNVRT------DKKV---RVSRLVRLHSNEMEDVEEVLAGDIFAL-FGV--DCASGDTFVTDKNNSIS 348 (610)
Q Consensus 281 V~sG~l~~g~~v~~~~~------~~~~---~v~~i~~~~g~~~~~v~~a~aGdiv~i-~gl--~~~~Gdtl~~~~~~~~~ 348 (610)
+.+|.|+.||++.+.+. ++.. -.+.+..+++. ...+++|.+|-.+++ ++| .+..+|-|. .. +.
T Consensus 241 l~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag-~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~-G~---V~ 315 (415)
T COG5257 241 LVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG-GEDVEEARPGGLVGVGTKLDPTLTKADALV-GQ---VV 315 (415)
T ss_pred eeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC-CeeeeeccCCceEEEecccCcchhhhhhhc-cc---cc
Confidence 99999999999998642 1110 11233333333 457999999999887 455 344455444 11 11
Q ss_pred cccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcEEEEEech
Q psy12559 349 LESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 406 (610)
Q Consensus 349 ~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~il~g~Ge 406 (610)
-.+-..|+...++.++-. -|.++.-.+-.++++- -.++|.++...|-
T Consensus 316 G~pG~lPpv~~~~~ie~~----------LL~RvvG~~~e~kvep-ik~~E~Lml~VGt 362 (415)
T COG5257 316 GKPGTLPPVWTSIRIEYH----------LLERVVGTKEELKVEP-IKTNEVLMLNVGT 362 (415)
T ss_pred cCCCCCCCceEEEEEEee----------ehhhhhCccccccccc-ccCCCeEEEEeec
Confidence 112233444555556532 2444544555555543 3577777765553
No 65
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.90 E-value=3.9e-24 Score=188.61 Aligned_cols=115 Identities=45% Similarity=0.799 Sum_probs=108.0
Q ss_pred EEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCce
Q psy12559 433 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 512 (610)
Q Consensus 433 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv 512 (610)
|||||+++++..+.+++++||.+|||.|+++++|+++ +.++.|.+++.++.+|++|++||++|+++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~--g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPR--GSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCC--CCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 8999999998779999999999999999999999864 56899999999999999999999999999999999999999
Q ss_pred eeeEEEEecCcccCCCCchhHHhhhccCcceeeeeec
Q psy12559 513 AGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKA 549 (610)
Q Consensus 513 ~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a 549 (610)
+||+|+|.++.+|+++|++++|+.|++++++++..++
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988866443
No 66
>KOG1145|consensus
Probab=99.90 E-value=4.1e-22 Score=207.08 Aligned_cols=268 Identities=24% Similarity=0.336 Sum_probs=208.7
Q ss_pred cceeecceeEEEe-cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 11 GITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 11 giTi~s~~~~~~~-~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
|||....+.++.. +|..|+|+|||||.-|..-..|+.+++|.+||||.|.+||.+||.+.+++|+..++|+|+.|||+|
T Consensus 185 GITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiD 264 (683)
T KOG1145|consen 185 GITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKID 264 (683)
T ss_pred CccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccC
Confidence 7888777766554 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHH
Q psy12559 90 RLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHV 169 (610)
Q Consensus 90 r~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ 169 (610)
+++++++.++.++-+. |
T Consensus 265 kp~a~pekv~~eL~~~-g-------------------------------------------------------------- 281 (683)
T KOG1145|consen 265 KPGANPEKVKRELLSQ-G-------------------------------------------------------------- 281 (683)
T ss_pred CCCCCHHHHHHHHHHc-C--------------------------------------------------------------
Confidence 9999999988776431 0
Q ss_pred hcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCccccee
Q psy12559 170 AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKV 249 (610)
Q Consensus 170 ~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~ 249 (610)
+-.|+ -+--++++..||++|.|++.|.+++.-..- . .
T Consensus 282 ----------------i~~E~----------~GGdVQvipiSAl~g~nl~~L~eaill~Ae----~-------------m 318 (683)
T KOG1145|consen 282 ----------------IVVED----------LGGDVQVIPISALTGENLDLLEEAILLLAE----V-------------M 318 (683)
T ss_pred ----------------ccHHH----------cCCceeEEEeecccCCChHHHHHHHHHHHH----H-------------h
Confidence 00011 122366777799999999999998864321 1 0
Q ss_pred ecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE
Q psy12559 250 VLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL 328 (610)
Q Consensus 250 ~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i 328 (610)
.+..+ +++|+-++|....-|++ |.++.+-|-.|||++|+.+.... .-.||..|+-.+| .++++|.+|.-+-|
T Consensus 319 dLkA~--p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V 391 (683)
T KOG1145|consen 319 DLKAD--PKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEV 391 (683)
T ss_pred hcccC--CCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEe
Confidence 12223 88999999999999988 99999999999999999887753 3457777765554 57999999999999
Q ss_pred cCC-Cc-ccCceEecCCC----------------------------------------Ccccc------ccc--cCCCce
Q psy12559 329 FGV-DC-ASGDTFVTDKN----------------------------------------NSISL------ESI--YVADPV 358 (610)
Q Consensus 329 ~gl-~~-~~Gdtl~~~~~----------------------------------------~~~~~------~~~--~~~~Pv 358 (610)
.|+ ++ ..||-+..-.+ ..... ..+ ....|.
T Consensus 392 ~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~~~v~~~~~~~~ 471 (683)
T KOG1145|consen 392 LGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRKTRVELHEQNPL 471 (683)
T ss_pred ecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccceecccccCCcc
Confidence 999 66 56887752100 00000 011 223588
Q ss_pred EEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEE
Q psy12559 359 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFF 391 (610)
Q Consensus 359 ~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~ 391 (610)
+++-|.....+-.+.+.++|+-|..+.-.+++-
T Consensus 472 ~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v 504 (683)
T KOG1145|consen 472 FNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVV 504 (683)
T ss_pred eEEEEEecccchHHHHHHHHhhcCCCceEEEEE
Confidence 999999999999999999999998666555553
No 67
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=3.9e-23 Score=183.46 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=101.9
Q ss_pred eEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCC--CCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCcc
Q psy12559 431 VAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSA--NTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLS 508 (610)
Q Consensus 431 V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~--~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~ 508 (610)
|+|||||+++++..++|++++||.+||++|+++++|++++. +.++.|.+.. ++.+|++|++||++|+++++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 68999999998877999999999999999999999997543 1246777555 78899999999999999999999999
Q ss_pred CCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeee
Q psy12559 509 GSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIK 548 (610)
Q Consensus 509 g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~ 548 (610)
||||+||+|+|+++.+|+++|+++.+ +|+++|++++..+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~ 118 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKS 118 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHh
Confidence 99999999999999999998887777 8788888876543
No 68
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.88 E-value=4.9e-23 Score=181.93 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=107.3
Q ss_pred EEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCce
Q psy12559 433 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRV 512 (610)
Q Consensus 433 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv 512 (610)
|||||.++++..+.+++++||.+||++|+++++|+++ +.++.|.+.+.++.+|++|+++|++||++++.+||||||||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~--~~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLER--GSGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCC--CCCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 9999999998888999999999999999999999975 56899999999999999999999999999999999999999
Q ss_pred eeeEEEEecCcccCCCCchhHHhhhccCcceeeeee
Q psy12559 513 AGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIK 548 (610)
Q Consensus 513 ~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~ 548 (610)
+||+|+|.++.+|+.++++++|+.|++.|++++..+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~ 114 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQK 114 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876543
No 69
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.88 E-value=2.4e-21 Score=215.01 Aligned_cols=235 Identities=26% Similarity=0.355 Sum_probs=159.4
Q ss_pred EEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCHHHHHHHHHHHh
Q psy12559 28 INIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKV 106 (610)
Q Consensus 28 inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~~~~~~~i~~~l 106 (610)
++|+|||||.+|...+.++++.+|++++|+|+.+|++.||...++.+...++|+++++||||+.. .....
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~--------- 143 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTE--------- 143 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhc---------
Confidence 79999999999999999999999999999999999999999999999999999999999999852 10000
Q ss_pred CCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCC
Q psy12559 107 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSI 186 (610)
Q Consensus 107 ~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 186 (610)
+ .+ ++... . .-+........+...++. .+|.+..+
T Consensus 144 ~-------~~-------------------~~e~~-----~--~~~~~v~~~f~~~l~ev~------------~~L~~~g~ 178 (586)
T PRK04004 144 D-------AP-------------------FLESI-----E--KQSQRVQQELEEKLYELI------------GQLSELGF 178 (586)
T ss_pred C-------ch-------------------HHHHH-----h--hhhHHHHHHHHHHHHHHH------------HHHHhcCC
Confidence 0 00 00000 0 000000000011111111 13333344
Q ss_pred CHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHH----hCCCCCCccccccccCcccceeecCCCCCCCCCeE
Q psy12559 187 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLD----YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFI 262 (610)
Q Consensus 187 ~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~----~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 262 (610)
..+.+.. ++. .+..+|++..||++|.|+++|++.+.. ++|.+..+ + ++.|+.
T Consensus 179 ~~e~~~~-~~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~------------------~--~~~~~~ 234 (586)
T PRK04004 179 SADRFDR-VKD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKI------------------D--VEGPGK 234 (586)
T ss_pred Chhhhhh-hhc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhcc------------------C--CCCCeE
Confidence 4433322 221 234577888899999999999988864 34444322 1 678999
Q ss_pred EEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCe--EEEeceEEEec--------cCcccccCcccCCCEEEE--c
Q psy12559 263 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLH--------SNEMEDVEEVLAGDIFAL--F 329 (610)
Q Consensus 263 ~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~--------g~~~~~v~~a~aGdiv~i--~ 329 (610)
+.|++++.+++ |++++++|++|+|++||.|...+.+. ..+|+.|+... +.....++++.|..-+-+ .
T Consensus 235 ~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~ 314 (586)
T PRK04004 235 GTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAP 314 (586)
T ss_pred EEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeC
Confidence 99999999988 99999999999999999999887653 35888887652 123456677766665544 3
Q ss_pred CC-CcccCceEe
Q psy12559 330 GV-DCASGDTFV 340 (610)
Q Consensus 330 gl-~~~~Gdtl~ 340 (610)
|+ ++..|+.+.
T Consensus 315 gl~~~~~g~~~~ 326 (586)
T PRK04004 315 DLEDALAGSPLR 326 (586)
T ss_pred CccccCCCCeEE
Confidence 76 556677655
No 70
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=187.35 Aligned_cols=244 Identities=21% Similarity=0.294 Sum_probs=190.2
Q ss_pred CCChHHHHHhcceeecceeEEEec-----------------------CeeEEEecCCCCcCcHHHHHHHHh--hcCEEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----------------------DHNINIIDTPGHVDFTVEVERALR--VLDGAIL 55 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----------------------~~~inlIDTPGh~dF~~ev~~al~--~~D~ail 55 (610)
+|..+.|.+||.|-..+..-+-++ ++.+.|+||-||.-+...++++|- ..|..+|
T Consensus 153 ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglL 232 (527)
T COG5258 153 LDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLL 232 (527)
T ss_pred hhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEE
Confidence 367789999999877666554332 478999999999999999999994 6899999
Q ss_pred EEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCHHHHHHHHHHHhCC-CeeEeeccccCCCCeeEEEEcccce
Q psy12559 56 VLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQMRQKVGH-NAAFLQIPIGLGSETKGIIDLIQRK 133 (610)
Q Consensus 56 VvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~~~~~~~i~~~l~~-~~~~~~~p~~~~~~~~g~~d~~~~~ 133 (610)
+|.|.+|++..|++++-.+...++|+|++++|+|... ..++.+.++|...|.. +-+|+. +.
T Consensus 233 vVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~--vk--------------- 295 (527)
T COG5258 233 VVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLI--VK--------------- 295 (527)
T ss_pred EEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhccccee--ee---------------
Confidence 9999999999999999999999999999999999973 4577788888877753 111111 00
Q ss_pred eEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCc-eeEEEeccc
Q psy12559 134 AIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK-FTPVLVGTA 212 (610)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~-~~Pv~~~Sa 212 (610)
+.| +...+. .+...++ ++|+|..|+
T Consensus 296 -------------------------------------~~~----------------d~v~aa-~a~k~~~~vvPi~~tSs 321 (527)
T COG5258 296 -------------------------------------DTD----------------DVVLAA-KAMKAGRGVVPIFYTSS 321 (527)
T ss_pred -------------------------------------ccc----------------hhHHhh-hhhhcCCceEEEEEEec
Confidence 001 111111 1222344 899999999
Q ss_pred cCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCE
Q psy12559 213 LKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEM 291 (610)
Q Consensus 213 ~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~ 291 (610)
.+|.|++ ||+.+..+||.-... +..+||.+||.|++...+ |.++.|.|-||.++.||+
T Consensus 322 VTg~Gld-lL~e~f~~Lp~rr~~--------------------~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~ 380 (527)
T COG5258 322 VTGEGLD-LLDEFFLLLPKRRRW--------------------DDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDT 380 (527)
T ss_pred ccCccHH-HHHHHHHhCCccccc--------------------CCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCE
Confidence 9999998 667777788754311 168999999999999999 999999999999999999
Q ss_pred EEecCC--C--eEEEeceEEEeccCcccccCcccCCCEEE--EcCC---CcccCceEe
Q psy12559 292 IYNVRT--D--KKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFV 340 (610)
Q Consensus 292 v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~ 340 (610)
|++.+. | ...+|++|. .++..+++|.||+|++ +.|. .+..|.+|.
T Consensus 381 vllGP~~~G~fr~v~vkSIe----mh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~ 434 (527)
T COG5258 381 VLLGPFKDGKFREVVVKSIE----MHHYRVDSAKAGSIIGIALKGVEKEELERGMVLS 434 (527)
T ss_pred EEEccCCCCcEEEEEEEEEE----EeeEEeccccCCcEEEEEecccCHHHHhcceEec
Confidence 998764 3 346777876 4577899999999986 5677 478898887
No 71
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.87 E-value=1.8e-20 Score=216.00 Aligned_cols=302 Identities=21% Similarity=0.224 Sum_probs=196.6
Q ss_pred HHHHhcceeecceeEEEecCe------------------eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh
Q psy12559 6 LERQRGITIQSAATYTLWKDH------------------NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT 67 (610)
Q Consensus 6 ~E~eRgiTi~s~~~~~~~~~~------------------~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt 67 (610)
++-.+|||.+..+..+.++.. .++|+|||||.+|.....++++.+|++++|+|+.+|++.||
T Consensus 488 ~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT 567 (1049)
T PRK14845 488 KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQT 567 (1049)
T ss_pred cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhH
Confidence 456789999999999887521 28999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEecccCC-CCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceE
Q psy12559 68 LTVNRQMKRYDVPCIAFINKLDRL-GADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLR 146 (610)
Q Consensus 68 ~~v~~~~~~~~ip~i~~iNKiDr~-~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~ 146 (610)
..+++.+...++|+|+++||+|+. +.+... +
T Consensus 568 ~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~--------------------------------------------~---- 599 (1049)
T PRK14845 568 IEAINILRQYKTPFVVAANKIDLIPGWNISE--------------------------------------------D---- 599 (1049)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcccccccc--------------------------------------------c----
Confidence 999999999999999999999985 222000 0
Q ss_pred eecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHH
Q psy12559 147 IEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVL 226 (610)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~ 226 (610)
.++-..+........+++-+.+.+.-.+ |....+..+.. ..+. ..+..+|+++.||++|.|++.|+++|.
T Consensus 600 -~~~~~~~~~q~~~~~~el~~~l~~v~~~-----L~~~G~~~e~~-~~~~---d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 600 -EPFLLNFNEQDQHALTELEIKLYELIGK-----LYELGFDADRF-DRVQ---DFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred -hhhhhhhhhhHHHHHHHHHHHHHHHhhH-----HHhcCcchhhh-hhhh---hcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 0000000000011111111111000000 11111122111 1111 124568888889999999999999887
Q ss_pred HhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCe--EEEe
Q psy12559 227 DYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRV 303 (610)
Q Consensus 227 ~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v 303 (610)
...+.-.+.. +..+ +++|+.++|..++.+++ |.++.++|++|+|++||.|.+.+.+. ..+|
T Consensus 670 ~l~~~~l~~~--------------L~~~--~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kV 733 (1049)
T PRK14845 670 GLAQKYLEER--------------LKLN--VEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKV 733 (1049)
T ss_pred HhhHHhhhhh--------------hccC--CCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEE
Confidence 5433211100 0111 67899999999999988 99999999999999999999987654 5677
Q ss_pred ceEEEe--------ccCcccccCcccCCCEEEEc--CC-CcccCceEecCCCCc--c--------ccccccCCCceEEEE
Q psy12559 304 SRLVRL--------HSNEMEDVEEVLAGDIFALF--GV-DCASGDTFVTDKNNS--I--------SLESIYVADPVVSMS 362 (610)
Q Consensus 304 ~~i~~~--------~g~~~~~v~~a~aGdiv~i~--gl-~~~~Gdtl~~~~~~~--~--------~~~~~~~~~Pv~~~a 362 (610)
+.|+.. .+.....++++.|+.-|-|. |+ ++..||.+....+.. . .+....+...-+.+-
T Consensus 734 RaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~vi 813 (1049)
T PRK14845 734 RALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIVPTKEKIEKAKEEVMKEVEEAKIETDKEGIL 813 (1049)
T ss_pred EEecCcccccccccccccccccccccCCCceEEecCCccccCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCcceeeEE
Confidence 777642 12245578888887777664 77 677888876211100 0 000111223446666
Q ss_pred EEeCCCcCHHHHHHHHHHH
Q psy12559 363 IKAVNNKDRDNFSKAVQRF 381 (610)
Q Consensus 363 iep~~~~d~~kL~~~L~~L 381 (610)
|.+...+-.+.|.++|+++
T Consensus 814 vKaDt~GSlEAl~~~L~~~ 832 (1049)
T PRK14845 814 IKADTLGSLEALANELRKA 832 (1049)
T ss_pred EEecccchHHHHHHHHHhC
Confidence 7777777777777777655
No 72
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=2e-19 Score=198.75 Aligned_cols=253 Identities=24% Similarity=0.314 Sum_probs=166.1
Q ss_pred HhcceeecceeEEEecC------------------eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH
Q psy12559 9 QRGITIQSAATYTLWKD------------------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~------------------~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v 70 (610)
.+|+|.......+.+.. ..++|+|||||.+|.....++++.+|++++|+|+.+|+..||...
T Consensus 34 ~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~ 113 (590)
T TIGR00491 34 AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEA 113 (590)
T ss_pred CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHH
Confidence 35677766665555421 138999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe--e
Q psy12559 71 NRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI--E 148 (610)
Q Consensus 71 ~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~--~ 148 (610)
++.++..++|.|+++||+|+...- .... +..+.+ .
T Consensus 114 i~~l~~~~vpiIVv~NK~Dl~~~~--------~~~~-----------------------------------~~~f~e~sa 150 (590)
T TIGR00491 114 LNILRMYKTPFVVAANKIDRIPGW--------RSHE-----------------------------------GRPFMESFS 150 (590)
T ss_pred HHHHHHcCCCEEEEEECCCccchh--------hhcc-----------------------------------CchHHHHHH
Confidence 999999999999999999986310 0000 000000 0
Q ss_pred cCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHh
Q psy12559 149 EIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY 228 (610)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~ 228 (610)
.-+........+....++..+++. .+..+.+.. +. ..+..+|+++.||++|.|++.|+++|...
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~~------------G~~~e~~~~-i~---~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHEE------------GFEAERFDR-VT---DFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhc------------CccHHhhhh-hh---hcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000001111112222222222221 122221111 11 12345788888999999999999988643
Q ss_pred ----CCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCe--EE
Q psy12559 229 ----LPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KV 301 (610)
Q Consensus 229 ----lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~--~~ 301 (610)
++.... .+ +++|+.+.|..++.+.+ |.++.++|++|+|++||.|...+.+. ..
T Consensus 215 ~~~~l~~~l~------------------~~--~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~ 274 (590)
T TIGR00491 215 AQQYLEEQLK------------------LE--EEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVT 274 (590)
T ss_pred HHHHhhhhhc------------------cC--CCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccE
Confidence 222211 11 67899999999999988 99999999999999999999987653 46
Q ss_pred EeceEEEecc--------CcccccCcccC--CCEEEEcCC-CcccCceEe
Q psy12559 302 RVSRLVRLHS--------NEMEDVEEVLA--GDIFALFGV-DCASGDTFV 340 (610)
Q Consensus 302 ~v~~i~~~~g--------~~~~~v~~a~a--Gdiv~i~gl-~~~~Gdtl~ 340 (610)
+|+.|+...+ .+...++++.| |--+.+.|+ +...|+.+.
T Consensus 275 kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 275 RVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDDVMAGSPIR 324 (590)
T ss_pred EEEEecCCCccccccccccccCCcceecCCCceeEEecCCCCCCCCCEEE
Confidence 7888775542 12335566443 444555677 456676664
No 73
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.85 E-value=1.2e-21 Score=157.67 Aligned_cols=75 Identities=39% Similarity=0.702 Sum_probs=70.6
Q ss_pred CCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecC
Q psy12559 354 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGK 428 (610)
Q Consensus 354 ~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~ 428 (610)
+|+|+++++|+|.+++|.++|.+||++|++|||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 1 ~p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SSS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred CCCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999874
No 74
>KOG0461|consensus
Probab=99.85 E-value=8.1e-21 Score=187.04 Aligned_cols=217 Identities=24% Similarity=0.249 Sum_probs=174.3
Q ss_pred CChHHHHHhcceeecceeEEEec---------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH
Q psy12559 2 DSMELERQRGITIQSAATYTLWK---------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 72 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~---------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~ 72 (610)
|..|+-+|||||.+.....+... .-+++|+|||||......++.+..+.|.+++|||+..|.+.||.+.+-
T Consensus 37 Dk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi 116 (522)
T KOG0461|consen 37 DKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI 116 (522)
T ss_pred ccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhh
Confidence 77889999999999999888642 357899999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCeEEEEecccCCCCCHH-HHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCc
Q psy12559 73 QMKRYDVPCIAFINKLDRLGADPY-RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 151 (610)
Q Consensus 73 ~~~~~~ip~i~~iNKiDr~~~~~~-~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~ 151 (610)
.........+++|||+|..-.+-. ..++++..++
T Consensus 117 ig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~--------------------------------------------- 151 (522)
T KOG0461|consen 117 IGELLCKKLVVVINKIDVLPENQRASKIEKSAKKV--------------------------------------------- 151 (522)
T ss_pred hhhhhccceEEEEeccccccchhhhhHHHHHHHHH---------------------------------------------
Confidence 888888899999999998733211 1111111111
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCC----ccHHHHHHHHHH
Q psy12559 152 ADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKN----KGVQTLLDAVLD 227 (610)
Q Consensus 152 ~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~----~gv~~Lld~i~~ 227 (610)
.+.|. .+..+...|++..||..| .++++|.+++.+
T Consensus 152 ----------------------------------------~KtLe-~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 152 ----------------------------------------RKTLE-STGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred ----------------------------------------HHHHH-hcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 11111 112233467888899998 999999999987
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceE
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRL 306 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i 306 (610)
.+-.|. |++.+||.++|..++...+ |++..|.|.+|+++.|+.|..+.-+...||+++
T Consensus 191 ~if~P~---------------------Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKsl 249 (522)
T KOG0461|consen 191 RIFEPK---------------------RDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSL 249 (522)
T ss_pred hhcCCC---------------------cCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhH
Confidence 776664 2388999999999999988 999999999999999999999888877788877
Q ss_pred EEeccCcccccCcccCCCEEEEc
Q psy12559 307 VRLHSNEMEDVEEVLAGDIFALF 329 (610)
Q Consensus 307 ~~~~g~~~~~v~~a~aGdiv~i~ 329 (610)
..+ +.+|.+|.+||..++.
T Consensus 250 qmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 250 QMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred HHH----hhhhhhhhcccceeee
Confidence 644 5578999999998864
No 75
>KOG0459|consensus
Probab=99.84 E-value=2.3e-20 Score=187.79 Aligned_cols=238 Identities=23% Similarity=0.290 Sum_probs=178.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
||+..+||++|-|+.....+|+....+++++|+|||.-|..+++.++..+|.+++|++|..|- ..||+.+...
T Consensus 132 ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~L 211 (501)
T KOG0459|consen 132 LDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML 211 (501)
T ss_pred EcCchhhhhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999997653 4699999999
Q ss_pred HHhcCCCe-EEEEecccCCCCC-----HHHHHHHHHHHh---CCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCc
Q psy12559 74 MKRYDVPC-IAFINKLDRLGAD-----PYRVINQMRQKV---GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDN 144 (610)
Q Consensus 74 ~~~~~ip~-i~~iNKiDr~~~~-----~~~~~~~i~~~l---~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~ 144 (610)
++..++.. |++|||||-+..+ ++++.+.+...| |.++
T Consensus 212 akt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~---------------------------------- 257 (501)
T KOG0459|consen 212 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNP---------------------------------- 257 (501)
T ss_pred HHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccC----------------------------------
Confidence 99999987 6899999988544 223333222211 1110
Q ss_pred eEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHH
Q psy12559 145 LRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDA 224 (610)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~ 224 (610)
.....++|+ |.++|.++....+.
T Consensus 258 ------------------------------------------------------~~d~~f~p~---sg~tG~~~k~~~~s 280 (501)
T KOG0459|consen 258 ------------------------------------------------------KPDKHFVPV---SGLTGANVKDRTDS 280 (501)
T ss_pred ------------------------------------------------------CCCceeeec---ccccccchhhcccc
Confidence 011234555 77777777665542
Q ss_pred HHHh--CCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEE
Q psy12559 225 VLDY--LPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVR 302 (610)
Q Consensus 225 i~~~--lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~ 302 (610)
++.. .|++.+.- ..+-+.+|+.++|+.+.|..-+.|- |++.+|+|.||+++.||.+.+.+++....
T Consensus 281 ~cpwy~gp~fl~~l-----------d~l~~~~R~~~GP~~~pI~~Kykdm-GTvv~GKvEsGsi~kg~~lvvMPnk~~ve 348 (501)
T KOG0459|consen 281 VCPWYKGPIFLEYL-----------DELPHLERILNGPIRCPVANKYKDM-GTVVGGKVESGSIKKGQQLVVMPNKTNVE 348 (501)
T ss_pred cCCcccCCccceeh-----------hccCcccccCCCCEEeehhhhcccc-ceEEEEEecccceecCCeEEEccCCcceE
Confidence 2211 12221110 0011223458899998876544433 79999999999999999999999988889
Q ss_pred eceEEEeccCcccccCcccCCCEEE--EcCC---CcccCceEecCCCCc
Q psy12559 303 VSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFVTDKNNS 346 (610)
Q Consensus 303 v~~i~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~~~~~~~ 346 (610)
|..|| .+-.+++++.+|+.+- +.|+ ++.+|-+|| +++++
T Consensus 349 V~~I~----~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~-~~~n~ 392 (501)
T KOG0459|consen 349 VLGIY----SDDVETDRVAPGENVKLRLKGIEEEDISPGFILC-SPNNP 392 (501)
T ss_pred EEEEe----cccceeeeccCCcceEEEecccchhhccCceEEe-cCCCc
Confidence 99998 5577899999999986 5787 789999999 56544
No 76
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.84 E-value=8.6e-21 Score=186.89 Aligned_cols=92 Identities=28% Similarity=0.353 Sum_probs=86.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC-------CcchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-------GVQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~-------Gv~~qt~~v~~~ 73 (610)
+|++++||+||+|++++..+|.|++++++|||||||.+|..++.++++.+|++|+|||+.+ |+..||..+|..
T Consensus 52 ~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~ 131 (219)
T cd01883 52 LDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL 131 (219)
T ss_pred hcCCHHHhhCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998 678899999999
Q ss_pred HHhcCC-CeEEEEecccCCC
Q psy12559 74 MKRYDV-PCIAFINKLDRLG 92 (610)
Q Consensus 74 ~~~~~i-p~i~~iNKiDr~~ 92 (610)
+...++ |+|+|+||||+..
T Consensus 132 ~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 132 ARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHcCCCeEEEEEEcccccc
Confidence 888885 5678999999984
No 77
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=9.2e-20 Score=178.15 Aligned_cols=93 Identities=30% Similarity=0.382 Sum_probs=87.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++||+||+|++++...+.|+++.++|+|||||.+|..++..+++.+|++|+|+|+.+|+..|++.++..+...++|
T Consensus 52 ~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~ 131 (208)
T cd04166 52 VDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIR 131 (208)
T ss_pred ccCChhhhcCCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred e-EEEEecccCCCC
Q psy12559 81 C-IAFINKLDRLGA 93 (610)
Q Consensus 81 ~-i~~iNKiDr~~~ 93 (610)
. |+|+||||+...
T Consensus 132 ~iIvviNK~D~~~~ 145 (208)
T cd04166 132 HVVVAVNKMDLVDY 145 (208)
T ss_pred cEEEEEEchhcccC
Confidence 5 668999998753
No 78
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=1.2e-19 Score=178.71 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=91.8
Q ss_pred CCChHHHHHhcceeecceeE------------------------EEecCeeEEEecCCCCcCcHHHHHHHHh--hcCEEE
Q psy12559 1 MDSMELERQRGITIQSAATY------------------------TLWKDHNINIIDTPGHVDFTVEVERALR--VLDGAI 54 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~------------------------~~~~~~~inlIDTPGh~dF~~ev~~al~--~~D~ai 54 (610)
+|.++.|++||+|+..+... +..+++.++|||||||.+|..++.++++ .+|+++
T Consensus 35 ~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~l 114 (224)
T cd04165 35 LFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAM 114 (224)
T ss_pred hhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEE
Confidence 47789999999997544422 2345789999999999999999999996 799999
Q ss_pred EEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCC-CHHHHHHHHHHHhC
Q psy12559 55 LVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVG 107 (610)
Q Consensus 55 lVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~-~~~~~~~~i~~~l~ 107 (610)
+|||+.+|++.||+.+++++...++|.++++||+|+... .+.+.++++++.|.
T Consensus 115 lVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 115 LVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILK 168 (224)
T ss_pred EEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998754 46677888877765
No 79
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=1.4e-19 Score=176.23 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=83.4
Q ss_pred CCChHHHHHhcceeecceeEEEec---------------------------C------eeEEEecCCCCcCcHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK---------------------------D------HNINIIDTPGHVDFTVEVERAL 47 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~---------------------------~------~~inlIDTPGh~dF~~ev~~al 47 (610)
+|+.++|++||+|++++..++.|. + ++++|||||||.+|..++.+++
T Consensus 25 ~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 104 (203)
T cd01888 25 TVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGA 104 (203)
T ss_pred CCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhh
Confidence 488899999999999999999885 4 8899999999999999999999
Q ss_pred hhcCEEEEEEecCC-CcchhhHHHHHHHHhcCCC-eEEEEecccCCC
Q psy12559 48 RVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVP-CIAFINKLDRLG 92 (610)
Q Consensus 48 ~~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~~ip-~i~~iNKiDr~~ 92 (610)
+.+|++++|+|+.+ +++.||...|..+...++| +|+++||+|+..
T Consensus 105 ~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 105 AVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred hcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 99999999999998 4788999999988877774 688999999864
No 80
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=2.3e-18 Score=163.92 Aligned_cols=102 Identities=44% Similarity=0.652 Sum_probs=87.9
Q ss_pred CCChHHHHHhcceeecceeEEEe-----cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLW-----KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~-----~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|+.+.|++||+|+++..+.+.| +++.++|+|||||.+|...+.++++.+|++|+|+|+.++.+.++...|..+.
T Consensus 37 ~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~ 116 (179)
T cd01890 37 LDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL 116 (179)
T ss_pred ccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH
Confidence 36778899999999999888877 4678999999999999999999999999999999999999999999888888
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i 102 (610)
..++|+++++||+|+.+....+..+++
T Consensus 117 ~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 117 ENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred HcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 889999999999998754433333333
No 81
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=2.4e-18 Score=168.83 Aligned_cols=91 Identities=43% Similarity=0.584 Sum_probs=85.7
Q ss_pred CCChHHHHHhcceeecceeEEEec-----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|.+++|++||+|++++..++.|. .+.++|+|||||.+|..++.++++.+|++|+|+|+.+|...+++.+++.+.
T Consensus 41 ~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~ 120 (213)
T cd04167 41 TDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAI 120 (213)
T ss_pred CCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 578899999999999999999875 388999999999999999999999999999999999999999999999998
Q ss_pred hcCCCeEEEEecccCC
Q psy12559 76 RYDVPCIAFINKLDRL 91 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~ 91 (610)
..++|.++++||+|+.
T Consensus 121 ~~~~p~iiviNK~D~~ 136 (213)
T cd04167 121 LEGLPIVLVINKIDRL 136 (213)
T ss_pred HcCCCEEEEEECcccC
Confidence 8899999999999986
No 82
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=1.8e-18 Score=167.14 Aligned_cols=105 Identities=44% Similarity=0.619 Sum_probs=95.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|+.++|+++|+|+......+.|+++.++|+|||||.+|...+..+++.+|++++|+|+.+|...+++.+++.+...++|
T Consensus 40 ~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p 119 (194)
T cd01891 40 MDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK 119 (194)
T ss_pred cccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQK 105 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~ 105 (610)
+++++||+|+...++...++++++.
T Consensus 120 ~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 120 PIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHH
Confidence 9999999999876666555555443
No 83
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=3.3e-18 Score=165.07 Aligned_cols=92 Identities=24% Similarity=0.326 Sum_probs=84.9
Q ss_pred CCChHHHHHhcceeecceeEEEec--------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK--------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ 66 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~--------------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q 66 (610)
+|..++|++||+|+.....++.|. ++.++|+|||||.+|..++.++++.+|++++|+|+.+|.+.|
T Consensus 29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHH
Confidence 477889999999999999999887 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 67 TLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 67 t~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
+...+..+...++|+++++||+|+..
T Consensus 109 ~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 109 TAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHHcCCCEEEEEECcccCC
Confidence 98888877778999999999999874
No 84
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.74 E-value=1.3e-18 Score=163.93 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=106.4
Q ss_pred CceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCC--------------------------------------
Q psy12559 428 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP-------------------------------------- 469 (610)
Q Consensus 428 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~-------------------------------------- 469 (610)
+|.|+|||||...+...+..|..+ ...++++.++||+.
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~n----k~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPN----KKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeECCC----cccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 599999999998876555544433 34799999999852
Q ss_pred -----CCCCCcEEEeccccCC----CCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccC--CCCchhHHhhhc
Q psy12559 470 -----SANTKLEFIDETVGTN----VPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHM--VDSNEISFILAA 538 (610)
Q Consensus 470 -----~~~~~~~f~~~~~g~~----~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~--~ds~~~~f~~a~ 538 (610)
+..++|.|+|.+.+.. +.++++++|++||++|+++||||||||+||+|+|.++.+|+ .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 1224588888777443 45678999999999999999999999999999999999999 899999999999
Q ss_pred cCcceeeeeecccccchhhHHHH
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKA 561 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~ 561 (610)
+.|++.+...+.+ .++||++.
T Consensus 157 r~a~~~a~l~a~p--rLLEPim~ 177 (178)
T cd01683 157 RRACYSAFLLATP--RLMEPIYE 177 (178)
T ss_pred HHHHHHHHHHCCC--EEEcceEe
Confidence 9999999999976 68888764
No 85
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.74 E-value=8.9e-18 Score=139.15 Aligned_cols=82 Identities=28% Similarity=0.480 Sum_probs=77.8
Q ss_pred CCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC-Cccc
Q psy12559 258 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCAS 335 (610)
Q Consensus 258 ~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~ 335 (610)
++||+++|||+.+|++ |+++|+|||||+|++||.|++.. ++.+++.+|+.++|.+..+++++.||||+++.|+ ++.+
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~ 79 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGLRV 79 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCCcC
Confidence 3689999999999999 99999999999999999999877 6678999999999999999999999999999999 8999
Q ss_pred CceEe
Q psy12559 336 GDTFV 340 (610)
Q Consensus 336 Gdtl~ 340 (610)
||||+
T Consensus 80 Gdtl~ 84 (85)
T cd03690 80 GDVLG 84 (85)
T ss_pred ccccC
Confidence 99996
No 86
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.72 E-value=3.2e-17 Score=135.50 Aligned_cols=80 Identities=38% Similarity=0.680 Sum_probs=76.7
Q ss_pred eEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC-CcccCce
Q psy12559 261 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 338 (610)
Q Consensus 261 ~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdt 338 (610)
|+++|||++++++ |+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|+ ++++|||
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdt 80 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDT 80 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCE
Confidence 5789999999998 9999999999999999999998888889999999999999999999999999999999 8999999
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
||
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 98
No 87
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.70 E-value=8.2e-17 Score=132.30 Aligned_cols=80 Identities=78% Similarity=1.242 Sum_probs=76.7
Q ss_pred eEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCCCcccCceEe
Q psy12559 261 FIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGVDCASGDTFV 340 (610)
Q Consensus 261 ~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~Gdtl~ 340 (610)
|+++|||+.+|++|+++|+|||||+|++||.|++...++++++.+|+.++|.+..+++++.||||+++.|+++++||||+
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~~~~Gdtl~ 80 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGIDCASGDTFT 80 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCCcccCCEec
Confidence 57999999999889999999999999999999999888889999999999999999999999999999999999999997
No 88
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.69 E-value=1.1e-16 Score=132.48 Aligned_cols=78 Identities=29% Similarity=0.550 Sum_probs=74.8
Q ss_pred EEEEEEEe---eCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC-CcccCc
Q psy12559 263 ALAFKLEA---GKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGD 337 (610)
Q Consensus 263 ~~V~k~~~---~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gd 337 (610)
++|||+.+ +++ |+++|+|||||+|++||.|++...++.+++++|+.++|.+..+++++.||||+++.|+ ++.+||
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gd 80 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGD 80 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccC
Confidence 57999999 998 9999999999999999999999888889999999999999999999999999999999 899999
Q ss_pred eEe
Q psy12559 338 TFV 340 (610)
Q Consensus 338 tl~ 340 (610)
|||
T Consensus 81 tl~ 83 (85)
T cd03689 81 TLT 83 (85)
T ss_pred Eee
Confidence 998
No 89
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.69 E-value=3.5e-17 Score=155.27 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=104.5
Q ss_pred CceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCC--------------------------------------
Q psy12559 428 KPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPP-------------------------------------- 469 (610)
Q Consensus 428 ~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~-------------------------------------- 469 (610)
+|.|+|||||...+......+.. +...++.++++||+.
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~----n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSP----NKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcC----CcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 59999999999877533333322 234789999999852
Q ss_pred -----CCCCCcEEEeccccCCC----CcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCC--CCchhHHhhhc
Q psy12559 470 -----SANTKLEFIDETVGTNV----PKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMV--DSNEISFILAA 538 (610)
Q Consensus 470 -----~~~~~~~f~~~~~g~~~----~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~--ds~~~~f~~a~ 538 (610)
.+.+.|.|.|.+.+... +++|+++|++||++|+++||||||||+||+|+|.++.+|+. ++++++|+.|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 12256888887776555 78999999999999999999999999999999999999985 88999999999
Q ss_pred cCcceeeeeecccccchhhHHH
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSK 560 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~ 560 (610)
+.|++++...+.+ .++||++
T Consensus 157 r~a~~~a~~~a~p--~LlEPi~ 176 (177)
T cd01681 157 RRACYAAFLLASP--RLMEPMY 176 (177)
T ss_pred HHHHHHHHhhCCC--EEEcccc
Confidence 9999999998876 6888765
No 90
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.69 E-value=9.7e-16 Score=146.65 Aligned_cols=106 Identities=46% Similarity=0.682 Sum_probs=94.3
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
|....|+++|+|+......+.+.+..++|+||||+.+|......+++.+|++++|+|+.++...+.+..++.+...++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i 117 (189)
T cd00881 38 DVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI 117 (189)
T ss_pred cCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCe
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEEecccCCC-CCHHHHHHHHHHHhC
Q psy12559 82 IAFINKLDRLG-ADPYRVINQMRQKVG 107 (610)
Q Consensus 82 i~~iNKiDr~~-~~~~~~~~~i~~~l~ 107 (610)
++++||+|+.. .........+++.++
T Consensus 118 ~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 118 IVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred EEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 99999999985 455555666655554
No 91
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.68 E-value=1.8e-16 Score=131.16 Aligned_cols=80 Identities=48% Similarity=0.799 Sum_probs=76.6
Q ss_pred eEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC-CcccCce
Q psy12559 261 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDT 338 (610)
Q Consensus 261 ~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~Gdt 338 (610)
++|+|||+.++++ |+++|+|||||+|++||.|++..+++.+++.+|+.++|.+..+++++.||||+++.|+ ++++|||
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~Gdt 80 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTATGDT 80 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCCccCCE
Confidence 4789999999998 9999999999999999999999888889999999999999999999999999999999 8899999
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
|+
T Consensus 81 l~ 82 (83)
T cd04088 81 LC 82 (83)
T ss_pred ee
Confidence 97
No 92
>KOG1144|consensus
Probab=99.64 E-value=2.1e-15 Score=161.39 Aligned_cols=209 Identities=22% Similarity=0.292 Sum_probs=139.1
Q ss_pred hcceeecceeEEEecC------------------eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH
Q psy12559 10 RGITIQSAATYTLWKD------------------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 71 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~------------------~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~ 71 (610)
-|||-+..+..|...+ --+.+||||||..|+.-..|+...||.||+|||..+|+++||..-+
T Consensus 506 ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi 585 (1064)
T KOG1144|consen 506 GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI 585 (1064)
T ss_pred cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH
Confidence 4788888888776421 2488999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEecccCCCC---C-HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe
Q psy12559 72 RQMKRYDVPCIAFINKLDRLGA---D-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI 147 (610)
Q Consensus 72 ~~~~~~~ip~i~~iNKiDr~~~---~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~ 147 (610)
+.++..+.|.|+.+||+||+-- . ...+++.+.+.-.
T Consensus 586 ~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k---------------------------------------- 625 (1064)
T KOG1144|consen 586 NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK---------------------------------------- 625 (1064)
T ss_pred HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH----------------------------------------
Confidence 9999999999999999999810 0 0011111111000
Q ss_pred ecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHH
Q psy12559 148 EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLD 227 (610)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~ 227 (610)
.+-.+|..++ ..++-..++..-. .+.|+++ .-++.++.+++.||..|.||..||-.|++
T Consensus 626 -~v~~EF~~R~----~~ii~efaEQgLN-~~LyykN---------------k~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 626 -DVQNEFKERL----NNIIVEFAEQGLN-AELYYKN---------------KEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred -HHHHHHHHHH----HHHHHHHHHcccc-hhheeec---------------ccccceEEeeecccccCCCcHHHHHHHHH
Confidence 0001111111 1111111111100 1112221 22567788889999999999999999987
Q ss_pred hCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC
Q psy12559 228 YLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT 297 (610)
Q Consensus 228 ~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~ 297 (610)
+.-.-... .+. ....+-+.|..+-..++ |+-.-+-+..|+|+.||.|.+...
T Consensus 685 ltQk~m~~---kl~---------------y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~ 737 (1064)
T KOG1144|consen 685 LTQKTMVE---KLA---------------YVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGL 737 (1064)
T ss_pred HHHHHHHH---HHh---------------hhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCC
Confidence 65322110 000 22345677787777777 887777788999999999987643
No 93
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.60 E-value=4.1e-15 Score=123.79 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=73.9
Q ss_pred eEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC---eEEEeceEEEeccCcccccCcccCCCEEEEcCC-Cccc
Q psy12559 261 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DCAS 335 (610)
Q Consensus 261 ~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~ 335 (610)
|.++|||+.++++ |+++|+|||||+|++||+|++...+ +.+++++++.++|.+..+++++.||||+++.|+ ++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 4689999999998 9999999999999999999987653 357899999999999999999999999999999 8999
Q ss_pred CceEe
Q psy12559 336 GDTFV 340 (610)
Q Consensus 336 Gdtl~ 340 (610)
||||+
T Consensus 81 Gdtl~ 85 (86)
T cd03691 81 GDTIC 85 (86)
T ss_pred cceec
Confidence 99996
No 94
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.60 E-value=4.3e-15 Score=123.49 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=71.5
Q ss_pred eEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEc-C---C-Ccc
Q psy12559 261 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF-G---V-DCA 334 (610)
Q Consensus 261 ~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l-~~~ 334 (610)
|.++|||+.++++ |+++|+|||||+|++||.|++...++++++++|+.+ +.+..+++++.||||+++. | + ++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEEccccccCccc
Confidence 4789999999998 999999999999999999999888888999999955 7778999999999999985 4 4 578
Q ss_pred cCceEe
Q psy12559 335 SGDTFV 340 (610)
Q Consensus 335 ~Gdtl~ 340 (610)
+||||+
T Consensus 80 ~Gdtl~ 85 (86)
T cd03699 80 VGDTIT 85 (86)
T ss_pred cccEee
Confidence 999997
No 95
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.59 E-value=1.2e-14 Score=135.60 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=80.6
Q ss_pred CChHHHHHhcceeecceeEEEec-CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC-
Q psy12559 2 DSMELERQRGITIQSAATYTLWK-DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV- 79 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~-~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i- 79 (610)
|..+.|..+|+|+......+.+. ++.++++|||||.+|...+..+++.+|++++|+|+.++...|+...+..+...+.
T Consensus 26 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~ 105 (164)
T cd04171 26 DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIK 105 (164)
T ss_pred ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCC
Confidence 34567788999999988888887 8899999999999999999999999999999999999998999888877776676
Q ss_pred CeEEEEecccCCC
Q psy12559 80 PCIAFINKLDRLG 92 (610)
Q Consensus 80 p~i~~iNKiDr~~ 92 (610)
|+++++||+|+..
T Consensus 106 ~~ilv~NK~Dl~~ 118 (164)
T cd04171 106 RGLVVLTKADLVD 118 (164)
T ss_pred cEEEEEECccccC
Confidence 8899999999864
No 96
>KOG1143|consensus
Probab=99.56 E-value=1.2e-13 Score=137.95 Aligned_cols=225 Identities=17% Similarity=0.233 Sum_probs=168.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCHHHHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQ 101 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~~~~~~~ 101 (610)
++.++|||..||..|...++.+|.. -|.|++||+|..|+.--|++++..+...++|.+++++|||... ...+.++.+
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHH
Confidence 4789999999999999999999974 5999999999999999999999999999999999999999974 345777777
Q ss_pred HHHHhC---CCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy12559 102 MRQKVG---HNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGE 178 (610)
Q Consensus 102 i~~~l~---~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e 178 (610)
+.+.+. +..+|.-+-
T Consensus 328 l~nll~~~Gc~kvp~~Vt-------------------------------------------------------------- 345 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVT-------------------------------------------------------------- 345 (591)
T ss_pred HHHHHhhcCccccceEee--------------------------------------------------------------
Confidence 777663 332222110
Q ss_pred hhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCC
Q psy12559 179 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGK 258 (610)
Q Consensus 179 ~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (610)
+.++-..+-++ ...+.++|+|+.|+..|.|+. |+..+.+.||+-..... +..+ ..
T Consensus 346 --------~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~e----------~~~L-----~q 400 (591)
T KOG1143|consen 346 --------TKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAEE----------RIQL-----VQ 400 (591)
T ss_pred --------chHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChHH----------HHHH-----hc
Confidence 11222222222 456789999999999999988 66677777764432211 1111 33
Q ss_pred CCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--C--eEEEeceEEEeccCcccccCcccCCCEEEEcC-C-
Q psy12559 259 HPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--D--KKVRVSRLVRLHSNEMEDVEEVLAGDIFALFG-V- 331 (610)
Q Consensus 259 ~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~g-l- 331 (610)
.|.-+.|-.++..|. |.++-|-+-+|.++.|+.+.+.+. | .+.+|.+|. +++.++..+.||+-..++= .
T Consensus 401 ~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~----Rnr~acrvvraGqaAslsl~d~ 476 (591)
T KOG1143|consen 401 LPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIR----RNRQACRVVRAGQAASLSLNDP 476 (591)
T ss_pred CcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeee----ccccceeeecCccceeeeccCC
Confidence 455677888898999 999999999999999999998764 3 345677887 6677888899999887642 1
Q ss_pred ---CcccCceEe
Q psy12559 332 ---DCASGDTFV 340 (610)
Q Consensus 332 ---~~~~Gdtl~ 340 (610)
.++.|.++.
T Consensus 477 D~~~LR~GMVl~ 488 (591)
T KOG1143|consen 477 DGVSLRRGMVLA 488 (591)
T ss_pred CccchhcceEEe
Confidence 356677766
No 97
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.56 E-value=1.6e-14 Score=122.01 Aligned_cols=80 Identities=26% Similarity=0.401 Sum_probs=72.4
Q ss_pred eEEEEEEEEeeC-C-ccEEEEEEEeceecCCCEEEecC---------CCeEEEeceEEEeccCcccccCcccCCCEEEEc
Q psy12559 261 FIALAFKLEAGK-F-GQLTYMRCYQGKLRKGEMIYNVR---------TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 329 (610)
Q Consensus 261 ~~~~V~k~~~~~-~-G~i~~~RV~sG~l~~g~~v~~~~---------~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~ 329 (610)
++++|||+.+++ + |+++|+|||||+|++|+.|++.. ..+.+++.+|+.++|.+..++++|+|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 6 99999999999999999998876 345688999999999999999999999999999
Q ss_pred CC-CcccCceEe
Q psy12559 330 GV-DCASGDTFV 340 (610)
Q Consensus 330 gl-~~~~Gdtl~ 340 (610)
|+ ++++|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 99 788898754
No 98
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.55 E-value=5e-15 Score=119.27 Aligned_cols=72 Identities=38% Similarity=0.679 Sum_probs=67.5
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|+++++|||++.+.+|.+|+|.+|+|||++||||+.++|+++||++|+|
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~ 73 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEF 73 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEE
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEe
Confidence 368999999999999999999999999999999999999999999999999999999999999999999975
No 99
>KOG0466|consensus
Probab=99.55 E-value=1e-14 Score=142.03 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=150.6
Q ss_pred hHHHHHhcceeecceeEEEe---c----------------------------------CeeEEEecCCCCcCcHHHHHHH
Q psy12559 4 MELERQRGITIQSAATYTLW---K----------------------------------DHNINIIDTPGHVDFTVEVERA 46 (610)
Q Consensus 4 ~~~E~eRgiTi~s~~~~~~~---~----------------------------------~~~inlIDTPGh~dF~~ev~~a 46 (610)
.+.|-||.|||+..++.... . -+.+.|+|||||.-++..|..+
T Consensus 66 FK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnG 145 (466)
T KOG0466|consen 66 FKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNG 145 (466)
T ss_pred ehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcc
Confidence 35799999999998876542 0 0568999999999999999999
Q ss_pred HhhcCEEEEEEecCCC-cchhhHHHHHHHHhcCCCeE-EEEecccCCCCC-HHHHHHHHHHHhCCCeeEeeccccCCCCe
Q psy12559 47 LRVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVPCI-AFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSET 123 (610)
Q Consensus 47 l~~~D~ailVvDa~~G-v~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~ 123 (610)
..+.|+|+++|.+.+. .|+||-+++....-++++.| ++-||+|+...+ ..+-+++|+.
T Consensus 146 aAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~k------------------- 206 (466)
T KOG0466|consen 146 AAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQK------------------- 206 (466)
T ss_pred hHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHH-------------------
Confidence 9999999999999985 58999999998888888875 788999987432 1111222211
Q ss_pred eEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCc
Q psy12559 124 KGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRK 203 (610)
Q Consensus 124 ~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 203 (610)
.++.....
T Consensus 207 ----------------------------------------------------------------------Fi~~t~ae-- 214 (466)
T KOG0466|consen 207 ----------------------------------------------------------------------FIQGTVAE-- 214 (466)
T ss_pred ----------------------------------------------------------------------HHhccccC--
Confidence 11111111
Q ss_pred eeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeC---------Cc
Q psy12559 204 FTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK---------FG 274 (610)
Q Consensus 204 ~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---------~G 274 (610)
-.|+++.||.-+.+++.+.+.|++++|-|... ...|..+.|.+.+... +|
T Consensus 215 ~aPiiPisAQlkyNId~v~eyivkkIPvPvRd---------------------f~s~prlIVIRSFDVNkPG~ev~~lkG 273 (466)
T KOG0466|consen 215 GAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD---------------------FTSPPRLIVIRSFDVNKPGSEVDDLKG 273 (466)
T ss_pred CCceeeehhhhccChHHHHHHHHhcCCCCccc---------------------cCCCCcEEEEEeeccCCCCchhhcccC
Confidence 24667779999999999999999999998632 4455566666666432 25
Q ss_pred cEEEEEEEeceecCCCEEEecCC-------Ce-EEE--eceEEEeccCcccccCcccCCCEEEE
Q psy12559 275 QLTYMRCYQGKLRKGEMIYNVRT-------DK-KVR--VSRLVRLHSNEMEDVEEVLAGDIFAL 328 (610)
Q Consensus 275 ~i~~~RV~sG~l~~g~~v~~~~~-------~~-~~~--v~~i~~~~g~~~~~v~~a~aGdiv~i 328 (610)
-++-+.+..|.|+.||.+.+.+. |. ..+ .++|..+.+ +..+++.|.+|-.+++
T Consensus 274 gvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 274 GVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred ccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 68999999999999999987542 11 111 223333333 3445777778776665
No 100
>KOG0463|consensus
Probab=99.54 E-value=8.4e-14 Score=139.13 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=172.2
Q ss_pred eeEEEecCCCCcCcHHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC-HHHHHHHH
Q psy12559 26 HNINIIDTPGHVDFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQM 102 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~-~~~~~~~i 102 (610)
+.|+|||..||..|...+.-++. .-|...++|-|..|+-..|++++-.|...++|+++|++|||..-++ .++.+.-+
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqEtmKll 298 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQETMKLL 298 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHHH
Confidence 67999999999999999888886 5799999999999999999999999999999999999999999877 46677777
Q ss_pred HHHhCC---CeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHh
Q psy12559 103 RQKVGH---NAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 179 (610)
Q Consensus 103 ~~~l~~---~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 179 (610)
.+.+.. +.+|+-+ .+-++ ++. .+.
T Consensus 299 ~rllkS~gcrK~PvlV--rs~DD------Vv~-~A~-------------------------------------------- 325 (641)
T KOG0463|consen 299 TRLLKSPGCRKLPVLV--RSMDD------VVH-AAV-------------------------------------------- 325 (641)
T ss_pred HHHhcCCCcccCcEEE--ecccc------eEE-eec--------------------------------------------
Confidence 776642 2222211 11000 000 000
Q ss_pred hhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCC
Q psy12559 180 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKH 259 (610)
Q Consensus 180 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (610)
+ +...+..|+|-.|..+|.+++ ||.++.+.+|.-...+ .+.
T Consensus 326 -----N-------------F~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~~~--------------------E~~ 366 (641)
T KOG0463|consen 326 -----N-------------FPSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQLN--------------------END 366 (641)
T ss_pred -----c-------------CccccccceEEeccccCCChH-HHHHHHhhcCcccccc--------------------cCC
Confidence 0 112356899999999999976 8999999987543221 677
Q ss_pred CeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC----eEEEeceEEEeccCcccccCcccCCCEE--EEcCC-
Q psy12559 260 PFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD----KKVRVSRLVRLHSNEMEDVEEVLAGDIF--ALFGV- 331 (610)
Q Consensus 260 p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~----~~~~v~~i~~~~g~~~~~v~~a~aGdiv--~i~gl- 331 (610)
|.-+.+..+|+.++ |+++.+..++|+++.+|.+...+.. -...|++|. +++-+|..+.+|+.. ++.++
T Consensus 367 PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIk 442 (641)
T KOG0463|consen 367 PAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIK 442 (641)
T ss_pred CcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccchhhhHhhhcc
Confidence 88889999999999 9999999999999999999987642 234566665 778899999999986 46666
Q ss_pred --CcccCceEecCCCC
Q psy12559 332 --DCASGDTFVTDKNN 345 (610)
Q Consensus 332 --~~~~Gdtl~~~~~~ 345 (610)
+++.|.++. ++..
T Consensus 443 r~~vRKGMVmV-sp~l 457 (641)
T KOG0463|consen 443 RKDVRKGMVMV-SPKL 457 (641)
T ss_pred hhhhhcceEEe-cCCC
Confidence 789999998 5543
No 101
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.49 E-value=1.3e-13 Score=157.52 Aligned_cols=209 Identities=22% Similarity=0.225 Sum_probs=152.4
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH--------HHHH--HH--hhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVER--AL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~--------ev~~--al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.|.|+......+.|++++++++||||+.+|.. |... .+ ..+|++++|+|++.... ...++.++.+.
T Consensus 34 pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~ 111 (772)
T PRK09554 34 AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLEL 111 (772)
T ss_pred CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHc
Confidence 58899888888999999999999999999863 2211 11 26899999999998643 34577888999
Q ss_pred CCCeEEEEecccCC-CCCHHHHHHHHHHHhCCCeeEeeccccCC-CCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 78 DVPCIAFINKLDRL-GADPYRVINQMRQKVGHNAAFLQIPIGLG-SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 78 ~ip~i~~iNKiDr~-~~~~~~~~~~i~~~l~~~~~~~~~p~~~~-~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
++|+++++||+|+. ........+++++++|...++++.+.+.+ +.+.+.++... .+.+ ....++|+++.
T Consensus 112 giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~-------~~~~--~~~~~yp~~le 182 (772)
T PRK09554 112 GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ-------ANEN--VELVHYPQPLL 182 (772)
T ss_pred CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh-------hccC--CcccCCCHHHH
Confidence 99999999999987 34556667889999999888887776654 22222211110 0011 11245677777
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHhhhcCCCCCHH------HHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHh
Q psy12559 156 KEAESKRQELIEHVAEG-DEILGEMFLEEKSISED------DIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDY 228 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~-dd~l~e~~l~~~~~~~~------~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~ 228 (610)
+.+.+.++.+.+.+++. ++.++.+|+|++....+ +..+.+++........|.+++|+.+..+++.+++.++..
T Consensus 183 ~~I~~l~~~L~e~iae~~~RwLAiKlLEgD~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~ 262 (772)
T PRK09554 183 NEADSLAKVMPSDIPLQQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNT 262 (772)
T ss_pred HHHHHHHHHhhhhhccccchHHHHHHhcCchHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77888888888877765 78899999998755443 444555555555556788899999999999999999865
Q ss_pred C
Q psy12559 229 L 229 (610)
Q Consensus 229 l 229 (610)
.
T Consensus 263 ~ 263 (772)
T PRK09554 263 L 263 (772)
T ss_pred c
Confidence 4
No 102
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.49 E-value=1.6e-13 Score=116.05 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=66.1
Q ss_pred eEEEEEEEEeeCC--ccEEEEEEEeceecCCCEEEecCCC---------eEEEeceEEEeccCcccccCcccCCCEEEEc
Q psy12559 261 FIALAFKLEAGKF--GQLTYMRCYQGKLRKGEMIYNVRTD---------KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF 329 (610)
Q Consensus 261 ~~~~V~k~~~~~~--G~i~~~RV~sG~l~~g~~v~~~~~~---------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~ 329 (610)
++++|||+.++++ |+++|+|||||+|++||.|++...+ ..++|++|+.++|.+..++++|.||||+++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4789999999987 4699999999999999999874321 4589999999999999999999999999999
Q ss_pred CC-CcccCc
Q psy12559 330 GV-DCASGD 337 (610)
Q Consensus 330 gl-~~~~Gd 337 (610)
|+ +..++.
T Consensus 81 gl~~~~~~~ 89 (94)
T cd04090 81 GIDSSIVKT 89 (94)
T ss_pred Ccchheece
Confidence 99 444443
No 103
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.47 E-value=6.2e-13 Score=124.76 Aligned_cols=87 Identities=37% Similarity=0.419 Sum_probs=76.3
Q ss_pred HHhcceeecceeEEEec---CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEE
Q psy12559 8 RQRGITIQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 84 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~---~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~ 84 (610)
..+++|.......+.+. ++.++|+|||||.+|......+++.+|++++|+|+.++...++...++.+...++|++++
T Consensus 29 ~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv 108 (168)
T cd01887 29 EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVA 108 (168)
T ss_pred cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEE
Confidence 34577877777777775 789999999999999988888999999999999999999999999999888899999999
Q ss_pred EecccCCCCC
Q psy12559 85 INKLDRLGAD 94 (610)
Q Consensus 85 iNKiDr~~~~ 94 (610)
+||+|+...+
T Consensus 109 ~NK~Dl~~~~ 118 (168)
T cd01887 109 LNKIDKPNAN 118 (168)
T ss_pred EEceeccccc
Confidence 9999987544
No 104
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=5.6e-13 Score=138.97 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=75.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCc----------CcHH-HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHV----------DFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~----------dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ 78 (610)
-|+|+++-.+.++|++.+|.||||.|.. .|+. .+..|+..+|.+++|+||.+|+..|..++..++.+.+
T Consensus 210 aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g 289 (444)
T COG1160 210 AGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG 289 (444)
T ss_pred CCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC
Confidence 4899999999999999999999999942 3332 4778888999999999999999999999999999999
Q ss_pred CCeEEEEecccCCC
Q psy12559 79 VPCIAFINKLDRLG 92 (610)
Q Consensus 79 ip~i~~iNKiDr~~ 92 (610)
.+.++++||||...
T Consensus 290 ~~~vIvvNKWDl~~ 303 (444)
T COG1160 290 RGIVIVVNKWDLVE 303 (444)
T ss_pred CCeEEEEEccccCC
Confidence 99999999999874
No 105
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.43 E-value=9.3e-13 Score=137.32 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=75.7
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcH---------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFT---------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~---------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
-|+|.+..+...+|.++.|.+|||+|..+.. .++..|+..||.+|+|||+.+|++++++.+.+.+++.++|
T Consensus 35 pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp 114 (444)
T COG1160 35 PGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP 114 (444)
T ss_pred CCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999987543 2588999999999999999999999999999999988899
Q ss_pred eEEEEecccCC
Q psy12559 81 CIAFINKLDRL 91 (610)
Q Consensus 81 ~i~~iNKiDr~ 91 (610)
+|+++||+|..
T Consensus 115 viLvvNK~D~~ 125 (444)
T COG1160 115 VILVVNKIDNL 125 (444)
T ss_pred EEEEEEcccCc
Confidence 99999999976
No 106
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.7e-12 Score=141.35 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=74.1
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcH-----------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~-----------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
..+|+|.++....+.+++..++|+||||+.+.. ..+.++++.+|++|+|+|+.+|...|+..+++++.+
T Consensus 203 ~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~ 282 (435)
T PRK00093 203 DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALE 282 (435)
T ss_pred CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 357899999888899999999999999975421 235578899999999999999999999999999999
Q ss_pred cCCCeEEEEecccCC
Q psy12559 77 YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~ 91 (610)
.++|+++++||||+.
T Consensus 283 ~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 283 AGRALVIVVNKWDLV 297 (435)
T ss_pred cCCcEEEEEECccCC
Confidence 999999999999986
No 107
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=1.6e-12 Score=141.43 Aligned_cols=83 Identities=23% Similarity=0.201 Sum_probs=73.8
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHH-----------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~-----------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
..|+|.++....+.+++..+.|+||||+.++.. .+..+++.+|++|+|+|+.+|++.|+..+++++.+.
T Consensus 203 ~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~ 282 (429)
T TIGR03594 203 IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA 282 (429)
T ss_pred CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc
Confidence 568899888888999999999999999865432 245678999999999999999999999999999999
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+|+++||+|+.
T Consensus 283 ~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 283 GKALVIVVNKWDLV 296 (429)
T ss_pred CCcEEEEEECcccC
Confidence 99999999999987
No 108
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.41 E-value=4.1e-12 Score=117.52 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=73.3
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHH--------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~--------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
..++|.......+.++++.++++|||||.++.. +....++.+|++++|+|+..+.+.++..+++++++.++|
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p 107 (157)
T cd01894 28 TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP 107 (157)
T ss_pred CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC
Confidence 346677777778888899999999999999654 566788999999999999999888888888999889999
Q ss_pred eEEEEecccCCCC
Q psy12559 81 CIAFINKLDRLGA 93 (610)
Q Consensus 81 ~i~~iNKiDr~~~ 93 (610)
+++++||+|+...
T Consensus 108 iiiv~nK~D~~~~ 120 (157)
T cd01894 108 VILVVNKVDNIKE 120 (157)
T ss_pred EEEEEECcccCCh
Confidence 9999999998743
No 109
>PRK15494 era GTPase Era; Provisional
Probab=99.33 E-value=2e-11 Score=127.96 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=64.8
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCc--------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDF--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 82 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF--------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i 82 (610)
+.|.......+.+++++++|+||||..+. ......+++.+|++|+|+|+..+....++.+++.+...+.|+|
T Consensus 85 ~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I 164 (339)
T PRK15494 85 QTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI 164 (339)
T ss_pred CCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence 44544444456788999999999998543 2223456889999999999999988888888888888889999
Q ss_pred EEEecccCCC
Q psy12559 83 AFINKLDRLG 92 (610)
Q Consensus 83 ~~iNKiDr~~ 92 (610)
+++||+|+..
T Consensus 165 lViNKiDl~~ 174 (339)
T PRK15494 165 FLLNKIDIES 174 (339)
T ss_pred EEEEhhcCcc
Confidence 9999999753
No 110
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.32 E-value=1.2e-11 Score=114.55 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=66.1
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHH------HHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE------VERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e------v~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
..|+|+......+.|+++.++|+||||+.+|... ....++ .+|++|+|+|+... .+....+.++.+.++|
T Consensus 26 ~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~ 103 (158)
T cd01879 26 WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLP 103 (158)
T ss_pred CCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCC
Confidence 4688998888889999999999999999887642 233343 89999999999873 3445566777788999
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
+++++||+|...
T Consensus 104 ~iiv~NK~Dl~~ 115 (158)
T cd01879 104 VVVALNMIDEAE 115 (158)
T ss_pred EEEEEehhhhcc
Confidence 999999999864
No 111
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.32 E-value=2.7e-11 Score=123.30 Aligned_cols=69 Identities=23% Similarity=0.185 Sum_probs=56.1
Q ss_pred EecCeeEEEecCCCCcCc--------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDF--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF--------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
..++.++.|+||||+.+. ...+..+++.+|++++|+|+..+...+ +.++..+...++|.++++||+|..
T Consensus 44 ~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 44 TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 345678999999997653 234567889999999999999876554 677788888899999999999986
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.30 E-value=4.8e-11 Score=112.04 Aligned_cols=86 Identities=21% Similarity=0.232 Sum_probs=71.1
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcH-----------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~-----------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
..++.|.......+.+++..+++|||||+.++. .....+++.+|++++|+|+..+...+...+++++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~ 111 (174)
T cd01895 32 DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILE 111 (174)
T ss_pred CCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh
Confidence 346777777667778888999999999986552 234456788999999999999998888889999888
Q ss_pred cCCCeEEEEecccCCCC
Q psy12559 77 YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~~ 93 (610)
.+.|+++++||+|+...
T Consensus 112 ~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 112 EGKALVIVVNKWDLVEK 128 (174)
T ss_pred cCCCEEEEEeccccCCc
Confidence 89999999999998754
No 113
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=2.2e-11 Score=133.51 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=71.6
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCc---------CcHHH--HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHV---------DFTVE--VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~---------dF~~e--v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
..|+|.++....+.+++..+.|+||||.. +|... ...+++.+|++|+|+|+.+++..|...++.++...
T Consensus 242 ~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~ 321 (472)
T PRK03003 242 VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA 321 (472)
T ss_pred CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 46888888888888999999999999952 33332 23567899999999999999999999999999989
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+|+++||+|+..
T Consensus 322 ~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 322 GRALVLAFNKWDLVD 336 (472)
T ss_pred CCCEEEEEECcccCC
Confidence 999999999999864
No 114
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.29 E-value=2.4e-11 Score=113.95 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=63.4
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHH----hcCCCeEEEE
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMK----RYDVPCIAFI 85 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~----~~~ip~i~~i 85 (610)
..|+......+.+++..++|+|||||.+|.......++.+|++++|+|+.+.-. .+....++.+. ..++|+++++
T Consensus 35 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 35 TPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 445555666788889999999999999999999999999999999999986421 12233333332 3589999999
Q ss_pred ecccCCC
Q psy12559 86 NKLDRLG 92 (610)
Q Consensus 86 NKiDr~~ 92 (610)
||+|+..
T Consensus 115 NK~D~~~ 121 (167)
T cd04160 115 NKQDLPD 121 (167)
T ss_pred Ecccccc
Confidence 9999864
No 115
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.28 E-value=2.4e-11 Score=132.22 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=75.2
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcC--------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~d--------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
..|+|.+.....+.|++..++||||||+.+ +...+..+++.+|++++|+|+..|+..+++.+++.+++.++|
T Consensus 30 ~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p 109 (429)
T TIGR03594 30 TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP 109 (429)
T ss_pred CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC
Confidence 358888888889999999999999999843 455678899999999999999999999999999999999999
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
+++++||+|...
T Consensus 110 iilVvNK~D~~~ 121 (429)
T TIGR03594 110 VILVANKIDGKK 121 (429)
T ss_pred EEEEEECccCCc
Confidence 999999999763
No 116
>COG1159 Era GTPase [General function prediction only]
Probab=99.27 E-value=5.1e-11 Score=118.06 Aligned_cols=70 Identities=26% Similarity=0.359 Sum_probs=61.8
Q ss_pred ecCeeEEEecCCCCcC--------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 23 WKDHNINIIDTPGHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 23 ~~~~~inlIDTPGh~d--------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
.++++|.|+||||... ...++..++..+|.+++|||+.++.....+.+++++++.+.|.|+++||+|+..
T Consensus 51 ~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~ 128 (298)
T COG1159 51 TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVK 128 (298)
T ss_pred cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCC
Confidence 3578999999999532 344688889999999999999999999999999999988899999999999874
No 117
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.26 E-value=7.8e-11 Score=108.20 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=74.6
Q ss_pred HhcceeecceeEEEecC-eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC-CCeEEEEe
Q psy12559 9 QRGITIQSAATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFIN 86 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~-~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~-ip~i~~iN 86 (610)
.|..|+-...-++...+ +.++|.|||||..|..-+.-.++.++|||++||++.+.....+.+++.....+ +|.++++|
T Consensus 50 kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~N 129 (187)
T COG2229 50 KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAIN 129 (187)
T ss_pred ccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEee
Confidence 34477766666777666 99999999999999999999999999999999999998887788888888777 99999999
Q ss_pred cccCCCCC
Q psy12559 87 KLDRLGAD 94 (610)
Q Consensus 87 KiDr~~~~ 94 (610)
|.|+..+.
T Consensus 130 K~DL~~a~ 137 (187)
T COG2229 130 KQDLFDAL 137 (187)
T ss_pred ccccCCCC
Confidence 99998654
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=2.8e-11 Score=138.94 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=71.9
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCc---------CcHHH--HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHV---------DFTVE--VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~---------dF~~e--v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
..|+|.++....+.+++..++|+||||+. +|... ...+++.+|++|+|+|+.+|++.|+..+++.+...
T Consensus 481 ~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~ 560 (712)
T PRK09518 481 LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA 560 (712)
T ss_pred CCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 46888888888888999999999999963 33322 34567899999999999999999999999999989
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+|+|+||||+..
T Consensus 561 ~~piIiV~NK~DL~~ 575 (712)
T PRK09518 561 GRALVLVFNKWDLMD 575 (712)
T ss_pred CCCEEEEEEchhcCC
Confidence 999999999999864
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.25 E-value=6.2e-11 Score=110.33 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=58.4
Q ss_pred ceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHH-HHHh---cCCCeEEEEecccCC
Q psy12559 17 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNR-QMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 17 ~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~-~~~~---~~ip~i~~iNKiDr~ 91 (610)
....+.+.+..++|+||||+.+|.......++.+|++|+|+|+.+.-..+ ....|. .... .++|+++++||+|+.
T Consensus 34 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 34 NVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 33456678899999999999999988888999999999999998743222 223333 2222 479999999999987
Q ss_pred CC
Q psy12559 92 GA 93 (610)
Q Consensus 92 ~~ 93 (610)
+.
T Consensus 114 ~~ 115 (158)
T cd04151 114 GA 115 (158)
T ss_pred CC
Confidence 54
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.25 E-value=7.1e-11 Score=110.02 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=58.6
Q ss_pred eeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHH------HhcCCCeEEEEecccC
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM------KRYDVPCIAFINKLDR 90 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~------~~~~ip~i~~iNKiDr 90 (610)
...+.+++..++++||||+.+|.......++.+|++|+|+|+.++.... ....++.+ ...++|+++++||+|+
T Consensus 37 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 37 VESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred eEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 3456678899999999999999999999999999999999998764321 12222222 1257999999999998
Q ss_pred CCC
Q psy12559 91 LGA 93 (610)
Q Consensus 91 ~~~ 93 (610)
...
T Consensus 117 ~~~ 119 (162)
T cd04157 117 PDA 119 (162)
T ss_pred cCC
Confidence 643
No 121
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.23 E-value=1.6e-11 Score=112.83 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=61.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH----H--HHHHH--hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV----E--VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~----e--v~~al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
.|.|+......+.+++..+.|+||||..++.. | +...+ ...|++|+|+||.. -.+...+..|+.+.++|+
T Consensus 31 pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~ 108 (156)
T PF02421_consen 31 PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPV 108 (156)
T ss_dssp TTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSE
T ss_pred CCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCE
Confidence 58899888889999999999999999655431 2 22333 46899999999986 456677888999999999
Q ss_pred EEEEecccCC
Q psy12559 82 IAFINKLDRL 91 (610)
Q Consensus 82 i~~iNKiDr~ 91 (610)
++++||||..
T Consensus 109 vvvlN~~D~a 118 (156)
T PF02421_consen 109 VVVLNKMDEA 118 (156)
T ss_dssp EEEEETHHHH
T ss_pred EEEEeCHHHH
Confidence 9999999975
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.22 E-value=1e-10 Score=108.71 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=62.3
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-chhhHHHHHH----HHhcCCCeEEEEe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQ----MKRYDVPCIAFIN 86 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~----~~~~~ip~i~~iN 86 (610)
.|+......+.+++..++++||||+..|.......++.+|++++|+|+..+- ..+....++. +...+.|++++.|
T Consensus 29 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 29 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 3444555667788899999999999999888888889999999999999762 1223333333 3345899999999
Q ss_pred cccCCC
Q psy12559 87 KLDRLG 92 (610)
Q Consensus 87 KiDr~~ 92 (610)
|+|+..
T Consensus 109 K~D~~~ 114 (158)
T cd00878 109 KQDLPG 114 (158)
T ss_pred ccCCcc
Confidence 999874
No 123
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.19 E-value=1.6e-10 Score=109.30 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=56.8
Q ss_pred eeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHH----HhcCCCeEEEEecccCCC
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~----~~~~ip~i~~iNKiDr~~ 92 (610)
...+.++++.++++||||+..|.......++.+|++++|+|+...-..+ ....+... ...++|+++++||+|+.+
T Consensus 50 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 50 IKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 3455667899999999999999888888899999999999998762211 12222222 236899999999999864
No 124
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.19 E-value=1.1e-11 Score=122.48 Aligned_cols=116 Identities=12% Similarity=0.185 Sum_probs=95.0
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEE-EEecccCCCC--CHHHHH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIA-FINKLDRLGA--DPYRVI 99 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~-~iNKiDr~~~--~~~~~~ 99 (610)
.++.+++|+||||+. .++..+++.+|.+++|+|+.+|++.++..+|+.+...++|.++ |+||+|+... +.++..
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~ 156 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTK 156 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHH
Confidence 368899999999975 6778888999999999999999999999999999999999754 9999999642 345667
Q ss_pred HHHHHHhCCCe------e------EeeccccCCCCeeEEEEcccceeEeecCCC
Q psy12559 100 NQMRQKVGHNA------A------FLQIPIGLGSETKGIIDLIQRKAIYFEGPL 141 (610)
Q Consensus 100 ~~i~~~l~~~~------~------~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~ 141 (610)
.+|++.+.... . ++++|..++..+.+.+++++++++.|....
T Consensus 157 ~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r 210 (225)
T cd01882 157 KRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSH 210 (225)
T ss_pred HHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCC
Confidence 77777554211 1 456788888999999999999999996543
No 125
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=1.7e-10 Score=126.56 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=73.5
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcC--------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~d--------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
..-|+|.+.....+.|+++.++|+||||+.. |...+..+++.+|++|+|+|+..|.......+++.+++.++
T Consensus 68 ~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~ 147 (472)
T PRK03003 68 DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGK 147 (472)
T ss_pred CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3557888877778889999999999999863 44557778999999999999999988888888899988999
Q ss_pred CeEEEEecccCCC
Q psy12559 80 PCIAFINKLDRLG 92 (610)
Q Consensus 80 p~i~~iNKiDr~~ 92 (610)
|+|+|+||+|+..
T Consensus 148 piilV~NK~Dl~~ 160 (472)
T PRK03003 148 PVILAANKVDDER 160 (472)
T ss_pred CEEEEEECccCCc
Confidence 9999999999763
No 126
>PRK00089 era GTPase Era; Reviewed
Probab=99.15 E-value=7.3e-10 Score=114.17 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=58.3
Q ss_pred cCeeEEEecCCCCcCc--------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDF--------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF--------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
++.++.|+||||+.+. ...+..++..+|++++|+|+..+.+.....+++.+...++|.++++||+|+.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 5579999999998654 3456678889999999999999888888888888887789999999999986
No 127
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.14 E-value=7.7e-10 Score=101.62 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=68.7
Q ss_pred HhcceeecceeEEEec-CeeEEEecCCCCcCcH-------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWK-DHNINIIDTPGHVDFT-------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~-~~~inlIDTPGh~dF~-------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
.++.|.......+.+. +..++|+||||+.++. ......++.+|++++|+|+..+....+..++.+....++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~ 106 (163)
T cd00880 27 VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP 106 (163)
T ss_pred CCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe
Confidence 4556666666666665 7899999999998875 3455688999999999999999888777777788889999
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
.++++||+|+..
T Consensus 107 ~ivv~nK~D~~~ 118 (163)
T cd00880 107 VLLVLNKIDLLP 118 (163)
T ss_pred EEEEEEccccCC
Confidence 999999999874
No 128
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.14 E-value=3.9e-10 Score=129.57 Aligned_cols=83 Identities=20% Similarity=0.373 Sum_probs=73.8
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcC--------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~d--------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
.-|+|.+.......|++..++||||||+.. |..++..+++.+|++|+|+|+.+|+....+.+++.+++.++|
T Consensus 306 ~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p 385 (712)
T PRK09518 306 TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP 385 (712)
T ss_pred CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 457888877778889999999999999763 566778889999999999999999999999899999999999
Q ss_pred eEEEEecccCC
Q psy12559 81 CIAFINKLDRL 91 (610)
Q Consensus 81 ~i~~iNKiDr~ 91 (610)
+|+++||+|..
T Consensus 386 vIlV~NK~D~~ 396 (712)
T PRK09518 386 VVLAVNKIDDQ 396 (712)
T ss_pred EEEEEECcccc
Confidence 99999999975
No 129
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.14 E-value=3.1e-10 Score=106.34 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=61.9
Q ss_pred ceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH---hcCCCeEEEE
Q psy12559 12 ITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFI 85 (610)
Q Consensus 12 iTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~---~~~ip~i~~i 85 (610)
++.+.....+.+++ ..++|+||||+.+|.......++.+|++++|+|+......+....| +.+. ..++|+|+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~ 115 (165)
T cd01864 36 IGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIG 115 (165)
T ss_pred cceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEE
Confidence 33344445666666 5789999999999999999999999999999999987655554344 3333 2478999999
Q ss_pred ecccCCC
Q psy12559 86 NKLDRLG 92 (610)
Q Consensus 86 NKiDr~~ 92 (610)
||+|+..
T Consensus 116 nK~Dl~~ 122 (165)
T cd01864 116 NKCDLEE 122 (165)
T ss_pred ECccccc
Confidence 9999863
No 130
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.14 E-value=5.1e-10 Score=106.06 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=62.0
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh--hHHHHHHHHh---cCCCeEEEEe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKR---YDVPCIAFIN 86 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q--t~~v~~~~~~---~~ip~i~~iN 86 (610)
-|+......+.+++..+.|+||||+..|.......++.+|++|+|+|+++.-..+ .+.+.+.+.. .++|+++++|
T Consensus 45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 4555556677888899999999999999988889999999999999998753221 1223333322 3689999999
Q ss_pred cccCCC
Q psy12559 87 KLDRLG 92 (610)
Q Consensus 87 KiDr~~ 92 (610)
|+|+.+
T Consensus 125 K~Dl~~ 130 (174)
T cd04153 125 KQDLKG 130 (174)
T ss_pred CCCCCC
Confidence 999864
No 131
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.12 E-value=5.2e-10 Score=121.91 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=72.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcC----c----HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVD----F----TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~d----F----~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
-|+|.+.....+.|+++.++||||||+.+ + ...+..+++.+|++|+|+|+.+|....+..+++++++.++|+
T Consensus 33 ~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pi 112 (435)
T PRK00093 33 PGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV 112 (435)
T ss_pred CCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcE
Confidence 47777777788899999999999999998 3 344677889999999999999999988888889999999999
Q ss_pred EEEEecccCC
Q psy12559 82 IAFINKLDRL 91 (610)
Q Consensus 82 i~~iNKiDr~ 91 (610)
|+++||+|..
T Consensus 113 ilv~NK~D~~ 122 (435)
T PRK00093 113 ILVVNKVDGP 122 (435)
T ss_pred EEEEECccCc
Confidence 9999999964
No 132
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.12 E-value=4.6e-10 Score=104.68 Aligned_cols=71 Identities=25% Similarity=0.172 Sum_probs=54.0
Q ss_pred EEEecCeeEEEecCCCC----cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC
Q psy12559 20 YTLWKDHNINIIDTPGH----VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 94 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh----~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~ 94 (610)
.+.|... ++|||||. .++..++..+++.+|++++|+|+.++...++..+++. ..+.|+++++||+|....+
T Consensus 33 ~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 33 AVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred EEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc
Confidence 3444433 47999995 5778888888999999999999998876666555443 2478999999999986433
No 133
>KOG0465|consensus
Probab=99.12 E-value=5.7e-11 Score=126.16 Aligned_cols=73 Identities=62% Similarity=0.978 Sum_probs=70.1
Q ss_pred ccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 538 AHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 538 ~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
...|+.+++++|.++.+..++.++|.++..|||++++..|.+++|++|+||||+||||..+||+++||+++++
T Consensus 432 vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~ 504 (721)
T KOG0465|consen 432 IPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAEL 504 (721)
T ss_pred cCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCcccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999864
No 134
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.12 E-value=4.6e-10 Score=107.80 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=61.0
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHH----HhcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~----~~~~ip~i~~iNK 87 (610)
|+......+.+.+..++++||||+.+|.......++.+|++++|+|+.+.-..+ ....+... ...+.|+++++||
T Consensus 50 T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK 129 (190)
T cd00879 50 TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNK 129 (190)
T ss_pred ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeC
Confidence 555555677888999999999999999888888899999999999998642211 22233322 2357999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 130 ~Dl~~ 134 (190)
T cd00879 130 IDLPG 134 (190)
T ss_pred CCCCC
Confidence 99864
No 135
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.10 E-value=6.3e-10 Score=103.99 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=58.4
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHhc--CCCeEEEEecccCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
..+..+...++|+||||+..|.......++.+|++|+|+|+..+...+... +++.+++. ++|++++.||+|+.
T Consensus 42 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 42 AKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 334445678999999999999999999999999999999998877655543 33444443 79999999999974
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.09 E-value=1.2e-09 Score=102.53 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=57.5
Q ss_pred cceeecceeEEEecCe-eEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCC-cchhh-HHHHHHHHh----
Q psy12559 11 GITIQSAATYTLWKDH-NINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG-VQSQT-LTVNRQMKR---- 76 (610)
Q Consensus 11 giTi~s~~~~~~~~~~-~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~G-v~~qt-~~v~~~~~~---- 76 (610)
+.|+......+.++++ .++|+||||+.+ +.....+.++.+|++++|+|+..+ -..+. ..+.+.+..
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~ 111 (170)
T cd01898 32 FTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPE 111 (170)
T ss_pred ccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcc
Confidence 4455555556677777 999999999743 344556667789999999999986 22233 233333333
Q ss_pred -cCCCeEEEEecccCCC
Q psy12559 77 -YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 -~~ip~i~~iNKiDr~~ 92 (610)
.++|+++++||+|...
T Consensus 112 ~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 112 LLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccccccEEEEEchhcCC
Confidence 3689999999999753
No 137
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.09 E-value=7.1e-10 Score=106.06 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=53.7
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-----HHHHHHHHhcCCCeEEEEecccCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-----LTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-----~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+.+..++++||||+..|.......++.+|++|+|+|+...-..+. ..+++.....++|+++++||+|..
T Consensus 49 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 49 SKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred CCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 356889999999999998878888899999999999987532222 223333344689999999999976
No 138
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.08 E-value=9.8e-10 Score=102.51 Aligned_cols=66 Identities=26% Similarity=0.370 Sum_probs=51.8
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHH----HhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM----KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~----~~~~ip~i~~iNKiDr~ 91 (610)
..++++||||+.+|.......++.+|++++|+|+.+.-..+.. .++... ...++|+++++||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 5788999999999999999999999999999999875433222 222222 23578999999999975
No 139
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.08 E-value=1.1e-09 Score=102.65 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=54.6
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH--------HHHHHH-hhcCEEEEEEecCCCcc---hhhHHHHHHHHhc-
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERAL-RVLDGAILVLCAVGGVQ---SQTLTVNRQMKRY- 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~--------ev~~al-~~~D~ailVvDa~~Gv~---~qt~~v~~~~~~~- 77 (610)
+.|.......+.+++..++|+||||+.++.. ....++ ..+|++|+|+|+..... .....+++.+++.
T Consensus 32 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~ 111 (168)
T cd01897 32 FTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF 111 (168)
T ss_pred CcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc
Confidence 3344445555667789999999999864211 122222 23699999999986432 2223455666555
Q ss_pred -CCCeEEEEecccCCC
Q psy12559 78 -DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 -~ip~i~~iNKiDr~~ 92 (610)
++|+|+++||+|...
T Consensus 112 ~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 112 KNKPVIVVLNKIDLLT 127 (168)
T ss_pred CcCCeEEEEEccccCc
Confidence 899999999999863
No 140
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.07 E-value=1.7e-09 Score=102.56 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=57.4
Q ss_pred eeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-chhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
...+.+++..++|+||||+..|.......++.+|++|+|+|++.-- .......|..+.. .++|++++.||+|+.+
T Consensus 49 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 49 VETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred eEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 3355677889999999999999988888899999999999987632 1223444544422 3689999999999864
No 141
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.07 E-value=1e-09 Score=101.31 Aligned_cols=81 Identities=25% Similarity=0.259 Sum_probs=64.1
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHH--------HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e--------v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
+|+|.......+.+.+..++++||||+.++... +...++.+|++++|+|+...........+++ ..++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~v 110 (157)
T cd04164 33 AGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPI 110 (157)
T ss_pred CCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCE
Confidence 466666666677888999999999999887543 4467788999999999998666655555554 568999
Q ss_pred EEEEecccCCC
Q psy12559 82 IAFINKLDRLG 92 (610)
Q Consensus 82 i~~iNKiDr~~ 92 (610)
++++||+|+..
T Consensus 111 i~v~nK~D~~~ 121 (157)
T cd04164 111 IVVLNKSDLLP 121 (157)
T ss_pred EEEEEchhcCC
Confidence 99999999863
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.06 E-value=1.3e-09 Score=105.76 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=61.8
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcH-----------HHH----HHHHhhcCEEEEEEecCCC----------
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFT-----------VEV----ERALRVLDGAILVLCAVGG---------- 62 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~-----------~ev----~~al~~~D~ailVvDa~~G---------- 62 (610)
...|+|.... .+.++ .++++||||+.++. ..+ .+++..+|++++|+|+...
T Consensus 38 ~~~~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~ 113 (201)
T PRK04213 38 KRPGVTRKPN--HYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGR 113 (201)
T ss_pred CCCceeeCce--EEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccC
Confidence 3457776543 44444 68999999964322 111 2244567899999999653
Q ss_pred -cchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHh
Q psy12559 63 -VQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 106 (610)
Q Consensus 63 -v~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l 106 (610)
...++..+++.+...++|+++++||+|+.... .+..+++.+.+
T Consensus 114 ~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 114 GEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 23456778888888899999999999986433 23344444433
No 143
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.06 E-value=9.4e-10 Score=103.30 Aligned_cols=76 Identities=21% Similarity=0.109 Sum_probs=58.6
Q ss_pred cceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH----HHHHhcCCCeEEEEeccc
Q psy12559 16 SAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 16 s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~----~~~~~~~ip~i~~iNKiD 89 (610)
.....+.+.+ ..+.++||||+.+|.......++.+|++++|+|...+...+....| ++....++|.+++.||+|
T Consensus 44 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D 123 (169)
T cd04114 44 FMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKID 123 (169)
T ss_pred EEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 4444566766 4578899999999999999999999999999999877554433334 333345799999999999
Q ss_pred CC
Q psy12559 90 RL 91 (610)
Q Consensus 90 r~ 91 (610)
+.
T Consensus 124 ~~ 125 (169)
T cd04114 124 LA 125 (169)
T ss_pred cc
Confidence 75
No 144
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.05 E-value=1.5e-09 Score=101.07 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=55.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHH---HhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~---~~~~ip~i~~iNKiDr~ 91 (610)
....++|+|||||.+|.......++.+|++|+|+|+.++.+.+...-| ... ...++|++++.||+|..
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 346789999999999999889999999999999999987766554444 333 23589999999999976
No 145
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.04 E-value=2.4e-10 Score=92.17 Aligned_cols=67 Identities=34% Similarity=0.570 Sum_probs=61.5
Q ss_pred ccEEEEEEEeceecCCCEEEe--cCCCeE---EEeceEEEeccCcccccCcccCCCEEEEcCC-C-cccCceEe
Q psy12559 274 GQLTYMRCYQGKLRKGEMIYN--VRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-D-CASGDTFV 340 (610)
Q Consensus 274 G~i~~~RV~sG~l~~g~~v~~--~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~-~~~Gdtl~ 340 (610)
|+++++||+||+|++||+|++ ..++++ .+|.+|+.+++....+++.+.+|+++++.++ + +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999 545555 8999999999999999999999999999999 7 79999996
No 146
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.04 E-value=1.7e-09 Score=103.54 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=60.2
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-hhHHHHHHHH----hcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMK----RYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-qt~~v~~~~~----~~~ip~i~~iNK 87 (610)
|+......+.+++..++++||||+..|.......++.+|++|+|+|+.+.-.. +....+..+. ..++|+++++||
T Consensus 48 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 48 TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred ccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 34444456677889999999999999988888899999999999999864322 2222333322 258999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+.+
T Consensus 128 ~Dl~~ 132 (184)
T smart00178 128 IDAPY 132 (184)
T ss_pred ccccC
Confidence 99864
No 147
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.04 E-value=2.2e-09 Score=101.14 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=55.4
Q ss_pred EEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-hhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 20 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
.+.+.+..++|+||||+..|.......++.+|++|+|+|+..-... .....|..... .++|++++.||+|...
T Consensus 47 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 47 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 4556789999999999999988777888999999999999874221 22333433322 4689999999999753
No 148
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.03 E-value=5.7e-09 Score=96.92 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=58.3
Q ss_pred EEecCeeEEEecCCCCcCcH--------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 21 TLWKDHNINIIDTPGHVDFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~~~inlIDTPGh~dF~--------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+...+..+.++||||+.+.. ......++.+|++++|+|+..........+++++...+.|.++++||+|+.
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 44556889999999987643 244566889999999999999876777777888888889999999999986
No 149
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.03 E-value=2.9e-09 Score=98.11 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=58.3
Q ss_pred eeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
...+.+++..++++||||+..|.......++.+|++++|+|+...-. .+....+..+.. .++|+++++||+|..+
T Consensus 36 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 36 MRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 34556678899999999999999999999999999999999986332 233344444332 5789999999999764
No 150
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.03 E-value=2.4e-09 Score=103.69 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=56.0
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-----HHHHhcCCCeEEEEecccCC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-----~~~~~~~ip~i~~iNKiDr~ 91 (610)
..+.+++ ..++|+|||||.+|.......++.+|++|+|+|+++.-..+....| +.....++|+|+++||+|+.
T Consensus 38 ~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 38 KEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 3455666 6789999999999988888889999999999999876443322222 22223579999999999986
Q ss_pred C
Q psy12559 92 G 92 (610)
Q Consensus 92 ~ 92 (610)
.
T Consensus 118 ~ 118 (198)
T cd04147 118 E 118 (198)
T ss_pred c
Confidence 3
No 151
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.03 E-value=2.9e-09 Score=99.27 Aligned_cols=75 Identities=16% Similarity=0.064 Sum_probs=55.7
Q ss_pred ceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-hhHHHHHHHHhc---CCCeEEEEecccCC
Q psy12559 17 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQMKRY---DVPCIAFINKLDRL 91 (610)
Q Consensus 17 ~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-qt~~v~~~~~~~---~ip~i~~iNKiDr~ 91 (610)
..+.+...+..++++||||+..|.......++.+|++++|+|+...-.- +...+++.+... ++|+++++||+|+.
T Consensus 41 ~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 41 QTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 3334444457889999999999988888888999999999999865332 233444444443 58899999999976
No 152
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.03 E-value=3.4e-09 Score=98.91 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred EEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 20 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
.+......++|+||||+..|.......++.+|++|+|+|+..--. .+....|+.+.. .+.|++++.||+|+.+
T Consensus 38 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 455678899999999999998888888999999999999976321 122333443322 3589999999999864
No 153
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.02 E-value=1.8e-09 Score=100.51 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=53.2
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-----chhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-----QSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-----~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+...+.++||||+.+|.......++.+|++++|+|....- ......+++.....++|+++++||+|..
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 4568999999999999999999999999999999987532 1222233333233689999999999976
No 154
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.02 E-value=1.3e-09 Score=121.94 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=64.4
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHH-----HHHH---HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE-----VERA---LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e-----v~~a---l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
.+|+|++.....+.++++.++++||||+.+|... +.+. .+.+|++++|+|++.. .+......++.+.++|
T Consensus 24 ~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P 101 (591)
T TIGR00437 24 WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP 101 (591)
T ss_pred CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC
Confidence 4689998888889999999999999999988542 2332 2368999999999873 2344556677788999
Q ss_pred eEEEEecccCC
Q psy12559 81 CIAFINKLDRL 91 (610)
Q Consensus 81 ~i~~iNKiDr~ 91 (610)
+++++||+|..
T Consensus 102 iIIVlNK~Dl~ 112 (591)
T TIGR00437 102 MILALNLVDEA 112 (591)
T ss_pred EEEEEehhHHH
Confidence 99999999975
No 155
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.02 E-value=2.4e-09 Score=100.89 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=58.5
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.+++..++++||||+..|.......++.+|++++|+|++..-. ......+..+.+ .+.|++++.||
T Consensus 30 T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 109 (169)
T cd04158 30 TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANK 109 (169)
T ss_pred cCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeC
Confidence 3333334567788999999999999998888888999999999999976321 112333443332 24899999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 110 ~Dl~~ 114 (169)
T cd04158 110 QDVAG 114 (169)
T ss_pred cCccc
Confidence 99863
No 156
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.01 E-value=3.2e-09 Score=101.40 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=56.3
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHH-h---cCCCeEEEEecccCCCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMK-R---YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~-~---~~ip~i~~iNKiDr~~~ 93 (610)
..+.+++..++++||||+..|.......++.+|++|+|+|+++.-.-+ .+..+.... . .++|++++.||+|..+.
T Consensus 54 ~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 456678899999999999999888888889999999999998643221 122233221 1 37899999999998643
No 157
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=5.5e-10 Score=125.40 Aligned_cols=71 Identities=41% Similarity=0.765 Sum_probs=69.1
Q ss_pred CcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 540 ~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
.|+.+.+++|+.+.|..++..+|.++++|||++.++.|.+|+|++|+||||+||||++++|+++||+++++
T Consensus 404 ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~ 474 (697)
T COG0480 404 EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEV 474 (697)
T ss_pred CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999864
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.00 E-value=4e-09 Score=99.53 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=59.2
Q ss_pred hcceeecceeEEEec-CeeEEEecCCCCcCc-------HHHHHHHHhhcCEEEEEEecCCCc------ch-hhHHHHHHH
Q psy12559 10 RGITIQSAATYTLWK-DHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVGGV------QS-QTLTVNRQM 74 (610)
Q Consensus 10 RgiTi~s~~~~~~~~-~~~inlIDTPGh~dF-------~~ev~~al~~~D~ailVvDa~~Gv------~~-qt~~v~~~~ 74 (610)
.+.|+......+.++ ++.++|+||||+.+. ..+..+.++.+|++++|+|+...- .. +...++..+
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 106 (176)
T cd01881 27 PFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAEL 106 (176)
T ss_pred CceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHH
Confidence 466777776777888 999999999998542 234566788899999999998762 11 222222222
Q ss_pred H----------hcCCCeEEEEecccCCC
Q psy12559 75 K----------RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 75 ~----------~~~ip~i~~iNKiDr~~ 92 (610)
. ..++|+++++||+|...
T Consensus 107 ~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 107 KLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred HHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2 14799999999999863
No 159
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.00 E-value=4.6e-09 Score=97.88 Aligned_cols=81 Identities=20% Similarity=0.121 Sum_probs=61.6
Q ss_pred cceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHHh---cCCCeEEE
Q psy12559 11 GITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAF 84 (610)
Q Consensus 11 giTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~~---~~ip~i~~ 84 (610)
.++.......+.+++ ..++++||||+..|.......++.+|++|+|+|+......+....|. ...+ .++|++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv 111 (164)
T smart00175 32 TIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLV 111 (164)
T ss_pred ceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 334444444555555 68899999999999999999999999999999999876665544453 3333 46999999
Q ss_pred EecccCC
Q psy12559 85 INKLDRL 91 (610)
Q Consensus 85 iNKiDr~ 91 (610)
+||+|..
T Consensus 112 ~nK~D~~ 118 (164)
T smart00175 112 GNKSDLE 118 (164)
T ss_pred EEchhcc
Confidence 9999975
No 160
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.00 E-value=2.9e-09 Score=103.18 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=57.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH-HHh--cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~-~~~--~~ip~i~~iNKiDr~ 91 (610)
+...++|+||||+.+|.......++.+|++|+|+|.+.....+....|.. +.+ .++|+|+|.||+|+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 35789999999999999988899999999999999999876665555543 544 579999999999974
No 161
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.99 E-value=3.4e-09 Score=101.28 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred eeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
...+.+.+..++++||||+..|.......++.+|++|+|+|+.+--. ......|....+ .++|++++.||.|..+
T Consensus 53 ~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 53 VETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 33456678999999999999998888888999999999999875211 112233333322 3589999999999864
No 162
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.99 E-value=6e-09 Score=97.01 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=54.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+.+|.......++.+|++++|+|+.+.-..+...-|..... .++|+++++||+|..
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 5689999999999999999999999999999999987654444444433222 489999999999975
No 163
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.98 E-value=4.6e-09 Score=98.06 Aligned_cols=67 Identities=25% Similarity=0.332 Sum_probs=51.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH-HHH----HHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQ----MKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v-~~~----~~~~~ip~i~~iNKiDr~ 91 (610)
...++++||||+.+|.......++.+|++++|+|+...-.-+...- +.. ....++|++++.||+|..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3678899999999999988899999999999999987433222222 222 223478999999999976
No 164
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.98 E-value=4.2e-09 Score=98.01 Aligned_cols=68 Identities=24% Similarity=0.208 Sum_probs=53.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-H----HHHhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-R----QMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~----~~~~~~ip~i~~iNKiDr~ 91 (610)
....++|+||||+..|.......++.+|++++|+|+......+....| + .+...++|+++++||+|+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 346789999999999988888889999999999999876554443333 2 2234578999999999986
No 165
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=6.1e-09 Score=97.99 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=63.5
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh----cCCCeEEEEe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFIN 86 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~----~~ip~i~~iN 86 (610)
-|+.....++.++++.++++||||+..|.......++.+|++|+|+|+...-..+ ....+..+.+ .++|+++|+|
T Consensus 29 ~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 29 PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred CcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 3444445567788999999999999999998899999999999999998743222 2334444432 4789999999
Q ss_pred cccCCCCC
Q psy12559 87 KLDRLGAD 94 (610)
Q Consensus 87 KiDr~~~~ 94 (610)
|+|+.++.
T Consensus 109 K~Dl~~~~ 116 (167)
T cd04161 109 KQDKKNAL 116 (167)
T ss_pred CCCCcCCC
Confidence 99987543
No 166
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.97 E-value=1.3e-09 Score=100.10 Aligned_cols=86 Identities=27% Similarity=0.258 Sum_probs=60.7
Q ss_pred HHHHhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhc-------CEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 6 LERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVL-------DGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 6 ~E~eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~-------D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
.+..+++|.......+.+++ +.++++|||||.+|........+.+ |.+++|+|+..+...+...+++.+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~ 107 (161)
T TIGR00231 28 TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES 107 (161)
T ss_pred CcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc
Confidence 34456777777666677777 8899999999999965554445544 44444455555555566666666654
Q ss_pred cCCCeEEEEecccCCC
Q psy12559 77 YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~ 92 (610)
++|+++++||+|+..
T Consensus 108 -~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 108 -NVPIILVGNKIDLRD 122 (161)
T ss_pred -CCcEEEEEEcccCCc
Confidence 899999999999874
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.96 E-value=2.9e-09 Score=115.77 Aligned_cols=82 Identities=24% Similarity=0.229 Sum_probs=66.6
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHH--------HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e--------v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
..|.|.+.....+.++++.++|+||||+.++... +...++.+|++++|+|+..+...+...+|.. ..++|
T Consensus 246 ~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p 323 (449)
T PRK05291 246 IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP 323 (449)
T ss_pred CCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC
Confidence 3577777777788889999999999999876543 3345778999999999999887777777776 55799
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
+++++||+|+..
T Consensus 324 iiiV~NK~DL~~ 335 (449)
T PRK05291 324 VIVVLNKADLTG 335 (449)
T ss_pred cEEEEEhhhccc
Confidence 999999999863
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.96 E-value=4.1e-09 Score=99.41 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=56.9
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHH----HHHHhcCCCeEEEEecccCCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVN----RQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~----~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+.+.+..++++||||+..|...+...++.+|++++|+|+.+-.. .++...+ +.....++|+++++||+|+..
T Consensus 51 ~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 51 KTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 3566778999999999999999888889999999999999986321 1222233 223345799999999999864
No 169
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.96 E-value=5.4e-09 Score=97.96 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=52.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
...+.|+||||+.+|.......++.+|++++|+|....-.-+. ..+++.+.+ .+.|++++.||+|+..
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 3679999999999999989999999999999999876433322 233334433 3678999999999753
No 170
>PTZ00369 Ras-like protein; Provisional
Probab=98.96 E-value=4.6e-09 Score=100.96 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=53.7
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH----hcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
..+.+.++|+||||+.+|.......++.+|++|+|+|+.+.-.-+.. .+++... ..++|++++.||+|+.
T Consensus 49 ~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 49 DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 33456788999999999999999999999999999999876542222 2223332 3478999999999975
No 171
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.95 E-value=6.6e-09 Score=96.57 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHH----hcCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMK----RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~----~~~ip~i~~iNKiDr~~ 92 (610)
+++.++++||||+..|.......++.+|++|+|+|+.+.-... ....+..+. ..++|+++++||+|+..
T Consensus 42 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 42 KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 3578999999999999888888899999999999998764211 122233322 25899999999999863
No 172
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.95 E-value=9.9e-09 Score=96.26 Aligned_cols=81 Identities=19% Similarity=0.161 Sum_probs=61.8
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHH--hcCCCeEEEEeccc
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMK--RYDVPCIAFINKLD 89 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~--~~~ip~i~~iNKiD 89 (610)
|+......+.+++..+.++||||+.+|.......++.+|++|+|+|+.+.-... .+..+..+. ..++|+++|.||+|
T Consensus 31 t~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~D 110 (164)
T cd04162 31 TTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQD 110 (164)
T ss_pred cCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcC
Confidence 333334567788999999999999999998889999999999999998754322 223334333 25899999999999
Q ss_pred CCCC
Q psy12559 90 RLGA 93 (610)
Q Consensus 90 r~~~ 93 (610)
+...
T Consensus 111 l~~~ 114 (164)
T cd04162 111 LPAA 114 (164)
T ss_pred CcCC
Confidence 8654
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.93 E-value=4e-09 Score=100.42 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=54.9
Q ss_pred eeEEEecCCCCc----------CcHHHHHHHHh---hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGHV----------DFTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh~----------dF~~ev~~al~---~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..++|+||||+. +|...+...++ .+|++++|+|+..++..++..+++.+...++|+++++||+|+..
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 379999999963 34443444444 46899999999999999999999999999999999999999863
No 174
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.93 E-value=9.9e-09 Score=96.34 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=55.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHH-HHHHh--cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~-~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
.+..++++||||+.++...+...++.+|++++|+|+...-..+.. ..| +.++. .++|++++.||+|+..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 567899999999999888888889999999999999887665552 234 33432 3789999999999864
No 175
>PTZ00099 rab6; Provisional
Probab=98.93 E-value=8.6e-09 Score=97.87 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=52.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
+..+++|+||||+..|.......++.+|++|+|+|++..-.-+.. .++..+.+ .++|+|++.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 357889999999999999899999999999999999885433332 23333322 357889999999975
No 176
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.92 E-value=1.1e-08 Score=96.21 Aligned_cols=66 Identities=27% Similarity=0.308 Sum_probs=52.2
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-----HHHHHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-----VNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-----v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
..++++||||+.+|.......++.+|++|+|+|....-..+... +++.....++|++++.||+|+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 57789999999999999999999999999999988754333322 2232234579999999999975
No 177
>PRK09866 hypothetical protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=110.85 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=58.1
Q ss_pred CeeEEEecCCCCcC-----cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC--CCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVD-----FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD--VPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~d-----F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~--ip~i~~iNKiDr~ 91 (610)
..++.|+||||... +...+..++..+|.+++|||+..+.....+.+.+.+++.+ .|++++|||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 36899999999642 4556788999999999999999998888899999888877 4999999999985
No 178
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.91 E-value=1.2e-08 Score=95.96 Aligned_cols=72 Identities=22% Similarity=0.185 Sum_probs=54.1
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH-----HH---hcCCCeEEEEeccc
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-----MK---RYDVPCIAFINKLD 89 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~-----~~---~~~ip~i~~iNKiD 89 (610)
.+.+++ ..++++||||+.+|.......++.+|++|+|+|+......+...-|.. +. ..++|+++++||+|
T Consensus 41 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (172)
T cd01862 41 EVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKID 120 (172)
T ss_pred EEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcc
Confidence 344544 567899999999999988899999999999999987654333333322 11 12799999999999
Q ss_pred CC
Q psy12559 90 RL 91 (610)
Q Consensus 90 r~ 91 (610)
+.
T Consensus 121 l~ 122 (172)
T cd01862 121 LE 122 (172)
T ss_pred cc
Confidence 86
No 179
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.91 E-value=1.4e-08 Score=95.60 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=54.2
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHHh---cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~~---~~ip~i~~iNKiDr~ 91 (610)
+...++++||||+..|.......++.+|++|+|+|+.....-+...-|- .+++ .++|++++.||+|+.
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3468999999999999988899999999999999998755555444343 3333 378999999999976
No 180
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.90 E-value=9.2e-09 Score=96.40 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=56.3
Q ss_pred EEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh------cCCCeEEEEecccCC
Q psy12559 20 YTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR------YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~------~~ip~i~~iNKiDr~ 91 (610)
.+.++...++++||||+.+|......+++.+|++|+|+|.......+ ...+|..+.+ .++|++++.||+|..
T Consensus 43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 43 SCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 33445678999999999999988888899999999999998765443 2344444443 468999999999975
No 181
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.89 E-value=2.9e-08 Score=92.25 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=61.5
Q ss_pred HhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH-hc--CCCeE
Q psy12559 9 QRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK-RY--DVPCI 82 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~-~~--~ip~i 82 (610)
..+++++.....+.+++ .+++++||||+..|...+...++.+|++++|+|.......+.. .++.+.. .. ++|++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii 109 (161)
T cd01861 30 QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV 109 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 34455555555566655 5689999999999998889999999999999999876544433 3333333 33 48999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++||+|..
T Consensus 110 lv~nK~D~~ 118 (161)
T cd01861 110 LVGNKTDLS 118 (161)
T ss_pred EEEEChhcc
Confidence 999999975
No 182
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.89 E-value=1.2e-08 Score=94.62 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=51.3
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH----hcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
+.++++||||+..|..-....++.+|++++|+|.......+.. .++..+. ..++|++++.||+|+.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5688999999999999999999999999999998864332322 2233332 3578999999999976
No 183
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.88 E-value=1.4e-08 Score=109.85 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=67.0
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHH--------HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEV--------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev--------~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
-|.|.+.....+.++++.++++||||+.++...+ ...++.+|++|+|+|+..+...+.. ++..+...++|+
T Consensus 235 pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~pi 313 (442)
T TIGR00450 235 KGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPF 313 (442)
T ss_pred CCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCE
Confidence 4677777777888999999999999987765432 3567889999999999988766555 667777678999
Q ss_pred EEEEecccCCCC
Q psy12559 82 IAFINKLDRLGA 93 (610)
Q Consensus 82 i~~iNKiDr~~~ 93 (610)
|+|+||+|+...
T Consensus 314 IlV~NK~Dl~~~ 325 (442)
T TIGR00450 314 ILVLNKIDLKIN 325 (442)
T ss_pred EEEEECccCCCc
Confidence 999999998643
No 184
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.88 E-value=1.1e-08 Score=96.09 Aligned_cols=68 Identities=21% Similarity=0.198 Sum_probs=53.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHhc--CCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~~--~ip~i~~iNKiDr~ 91 (610)
+...+.++||||+.+|.......++.+|++|+|+|...+..-+...-| +.+.+. ++|++++.||+|+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 456889999999999887777788899999999999987655544333 444332 69999999999975
No 185
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.88 E-value=1.9e-08 Score=93.85 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=52.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh--------cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--------YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~--------~~ip~i~~iNKiDr~ 91 (610)
....++|+||||+..|.......++.+|++|+|+|..+....+...-| +.+.+ .++|++++.||+|..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 457889999999999988888888999999999999875443333333 22322 468899999999975
No 186
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.88 E-value=2.2e-08 Score=93.83 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=51.9
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...++++||||+..|.......++.+|++|+|+|+.+.-.-+. ..+++.+.+ .++|++++.||+|..
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 3578999999999999988899999999999999987443322 223333333 468999999999975
No 187
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.88 E-value=2.2e-08 Score=104.27 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=56.4
Q ss_pred cceeecceeEEEecC-eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCC---cc-hhhHHHHHHHHh--
Q psy12559 11 GITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG---VQ-SQTLTVNRQMKR-- 76 (610)
Q Consensus 11 giTi~s~~~~~~~~~-~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~G---v~-~qt~~v~~~~~~-- 76 (610)
..|.....-.+.+.+ ..+.|+||||+.+ +.....+.+..+|++|+|+|+... -. .+-+.+.+++..
T Consensus 189 fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 189 FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 345555555566666 8999999999853 344566777789999999998863 11 222333333433
Q ss_pred ---cCCCeEEEEecccCCC
Q psy12559 77 ---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~~ 92 (610)
.++|+++++||+|...
T Consensus 269 ~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 269 PELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred hhhccCCEEEEEeCccCCC
Confidence 3689999999999863
No 188
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.87 E-value=1.5e-08 Score=97.60 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=51.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+..|.......++.+|++|+|+|+...-..+. +.++..+.+ .++|++++.||+|..
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 4688999999999998888888999999999999987533222 223333333 478999999999975
No 189
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.87 E-value=2.2e-08 Score=106.49 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=58.3
Q ss_pred cceeecceeEEEecC-eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC----CcchhhHHHHHHHHhc-
Q psy12559 11 GITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG----GVQSQTLTVNRQMKRY- 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~-~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~----Gv~~qt~~v~~~~~~~- 77 (610)
+.|.....-.+.+.+ ..|.|+||||... +...+.+.+..+|++++|||+.. ....+...+.+++..+
T Consensus 191 ~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 191 FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 455555555666665 4699999999754 45567788999999999999872 2223334555655553
Q ss_pred ----CCCeEEEEecccCC
Q psy12559 78 ----DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ----~ip~i~~iNKiDr~ 91 (610)
+.|.|+++||+|..
T Consensus 271 ~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 271 PKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred hhhcCCCEEEEEeCCccC
Confidence 68999999999976
No 190
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.87 E-value=2.6e-08 Score=96.84 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=54.6
Q ss_pred cceeecceeEEEecCe-eEEEecCCCCcCc-HH-------HHHHHHhhcCEEEEEEecCCCcchhhHH-H---HHHHHhc
Q psy12559 11 GITIQSAATYTLWKDH-NINIIDTPGHVDF-TV-------EVERALRVLDGAILVLCAVGGVQSQTLT-V---NRQMKRY 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~-~inlIDTPGh~dF-~~-------ev~~al~~~D~ailVvDa~~Gv~~qt~~-v---~~~~~~~ 77 (610)
+.|+......+.+.+. .++|+||||+.+. .. .+...+..+|++++|+|+..+...+... + ++.+...
T Consensus 73 ~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~ 152 (204)
T cd01878 73 FATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE 152 (204)
T ss_pred ceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC
Confidence 3455555555666664 9999999998542 11 1223456799999999999876544332 2 2333334
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+++|+||+|+..
T Consensus 153 ~~~viiV~NK~Dl~~ 167 (204)
T cd01878 153 DIPMILVLNKIDLLD 167 (204)
T ss_pred CCCEEEEEEccccCC
Confidence 689999999999864
No 191
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.86 E-value=2.3e-08 Score=92.00 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=57.3
Q ss_pred cceeEEEe--cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc---CCCeEEEEeccc
Q psy12559 16 SAATYTLW--KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY---DVPCIAFINKLD 89 (610)
Q Consensus 16 s~~~~~~~--~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~---~ip~i~~iNKiD 89 (610)
.....+.+ ....++++||||+..|.......++.+|++|+|+|+.+.-..+. ..++...... ++|.++++||+|
T Consensus 37 ~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 37 FKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred eEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 33344444 45788999999999999999999999999999999987443333 2333344443 489999999999
Q ss_pred CC
Q psy12559 90 RL 91 (610)
Q Consensus 90 r~ 91 (610)
..
T Consensus 117 ~~ 118 (159)
T cd00154 117 LE 118 (159)
T ss_pred cc
Confidence 75
No 192
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.85 E-value=1.7e-08 Score=94.44 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=52.4
Q ss_pred EecCeeEEEecCCCCcC-cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH-----hcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK-----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~d-F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~-----~~~ip~i~~iNKiDr~ 91 (610)
.++...++++||||+.. |.....+.++.+|++|+|+|+.....-+....| ..+. ..++|+|++.||+|+.
T Consensus 43 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 43 DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 33445789999999985 566788899999999999999987554433223 2222 2379999999999974
No 193
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.85 E-value=3.3e-08 Score=92.40 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=54.2
Q ss_pred EEEec--CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEecccCC
Q psy12559 20 YTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~--~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
.+..+ .+.++++||||+..|..-....++.+|++++|+|....-..+. ..++..+. ..++|++++.||+|..
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 41 QVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 34444 4567899999999999999999999999999999876543332 22333332 3579999999999975
No 194
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.85 E-value=2.7e-08 Score=93.42 Aligned_cols=72 Identities=22% Similarity=0.137 Sum_probs=55.1
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
.+.+++ ..++|+||||+.+|.......++.+|++|+|+|+.++..-+. +.++..+.+ .++|++++.||+|+.
T Consensus 44 ~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 44 TIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 444544 578999999999999988888999999999999987654433 233333332 468999999999986
No 195
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=3.1e-08 Score=96.20 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=52.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHH-------hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK-------RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~-------~~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+..|.......++.+|++|+|+|....-.-+....|. .+. ..++|++++.||+|+.
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 567899999999999888888899999999999988754444333332 221 2578999999999985
No 196
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.84 E-value=1.1e-08 Score=93.24 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=49.0
Q ss_pred EEEecCeeEEEecCCCCc----CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 20 YTLWKDHNINIIDTPGHV----DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh~----dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.|.+ ++|||||.. .+...+..+++.+|++|+|+|+.++...++..++... +.|.++++||+|+.
T Consensus 32 ~~~~~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~---~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 32 AVEYND---GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF---VKPVIGLVTKIDLA 101 (142)
T ss_pred eEEEcC---eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc---cCCeEEEEEeeccC
Confidence 345544 789999973 3334444567899999999999998887776544432 45999999999975
No 197
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.84 E-value=3.2e-08 Score=91.77 Aligned_cols=67 Identities=24% Similarity=0.215 Sum_probs=52.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-H---HHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-Q---MKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~---~~~~~ip~i~~iNKiDr~ 91 (610)
...++++||||+..|.......++.+|++++|+|..++-..+...-|. . ....++|+++++||+|..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 357899999999999888888889999999999998876544443332 2 222378999999999976
No 198
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.82 E-value=4.2e-08 Score=91.99 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=53.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH---hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~---~~~ip~i~~iNKiDr~ 91 (610)
...++++||||+..|.......++.+|++|+|+|....-.-+...-| +.+. ..+.|++++.||+|+.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 45789999999999999999999999999999999875544443333 3332 2467899999999986
No 199
>PLN03118 Rab family protein; Provisional
Probab=98.82 E-value=2.1e-08 Score=98.10 Aligned_cols=73 Identities=23% Similarity=0.183 Sum_probs=55.8
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHH-HH----hcCCCeEEEEecccC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQ-MK----RYDVPCIAFINKLDR 90 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~-~~----~~~ip~i~~iNKiDr 90 (610)
..+.+++ +.++|+||||+.+|.......++.+|++|+|+|+......+.. ..|.. .. ..++|.+++.||+|+
T Consensus 53 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 53 KQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3444543 6789999999999999899999999999999999875544443 23433 22 246799999999997
Q ss_pred C
Q psy12559 91 L 91 (610)
Q Consensus 91 ~ 91 (610)
.
T Consensus 133 ~ 133 (211)
T PLN03118 133 E 133 (211)
T ss_pred c
Confidence 6
No 200
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.81 E-value=6.4e-08 Score=93.77 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=51.2
Q ss_pred EEEecC--eeEEEecCCCCcCcH----HH----HHHHHhhcCEEEEEEecCCCcchhhHHH-HHHHH------hcCCCeE
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFT----VE----VERALRVLDGAILVLCAVGGVQSQTLTV-NRQMK------RYDVPCI 82 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~----~e----v~~al~~~D~ailVvDa~~Gv~~qt~~v-~~~~~------~~~ip~i 82 (610)
.+.+++ +.++|+||||+.+|. .+ ...+++.+|++|+|+|+...-.-+.... ++.+. ..++|++
T Consensus 41 ~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii 120 (198)
T cd04142 41 AVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV 120 (198)
T ss_pred EEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE
Confidence 345566 678899999987652 12 4466889999999999987654443332 33332 2568999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
++.||+|+.
T Consensus 121 ivgNK~Dl~ 129 (198)
T cd04142 121 VVGNKRDQQ 129 (198)
T ss_pred EEEECcccc
Confidence 999999985
No 201
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.81 E-value=5e-08 Score=91.18 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=57.0
Q ss_pred ceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEE
Q psy12559 12 ITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFI 85 (610)
Q Consensus 12 iTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~i 85 (610)
++.......+..++ ..++++||||+..|.......++.+|++|+|+|+.+.-..+.. .+++.+.+ .++|++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~ 115 (165)
T cd01868 36 IGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVG 115 (165)
T ss_pred cceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 33333344445555 5789999999999988888889999999999999864443332 23333332 368999999
Q ss_pred ecccCC
Q psy12559 86 NKLDRL 91 (610)
Q Consensus 86 NKiDr~ 91 (610)
||.|..
T Consensus 116 nK~Dl~ 121 (165)
T cd01868 116 NKSDLR 121 (165)
T ss_pred ECcccc
Confidence 999975
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.81 E-value=2.5e-08 Score=96.76 Aligned_cols=73 Identities=22% Similarity=0.163 Sum_probs=57.4
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH-HH---hcCCCeEEEEecccCC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK---RYDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~-~~---~~~ip~i~~iNKiDr~ 91 (610)
..+.+++ ..++|+||||+..|.......++.+|++|+|+|.+..-.-+...-|.. +. ..++|++++.||+|+.
T Consensus 40 ~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 40 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 3455555 778999999999999988999999999999999998665555444432 32 2468999999999975
No 203
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.81 E-value=4.6e-08 Score=91.07 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=50.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
...+.|+||||+..|..-....++.+|++++|+|....-..+. ..+++.+.+ .++|++++.||+|..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3567889999999998888888899999999999876433222 223333332 478999999999975
No 204
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.80 E-value=4.4e-08 Score=82.24 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---
Q psy12559 258 KHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 331 (610)
Q Consensus 258 ~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--- 331 (610)
+.||.+.|.+++...+ |+++.|||.+|+++.||+|++.+.+...+|++|... ..++++|.|||.+++ .++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHH
Confidence 4689999999998776 999999999999999999999999988999999733 456899999999985 665
Q ss_pred CcccCceEe
Q psy12559 332 DCASGDTFV 340 (610)
Q Consensus 332 ~~~~Gdtl~ 340 (610)
+++.||.||
T Consensus 78 ~v~~G~vl~ 86 (91)
T cd03693 78 DIKRGDVAG 86 (91)
T ss_pred HcCCcCEEc
Confidence 578999999
No 205
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.80 E-value=5.3e-08 Score=94.40 Aligned_cols=73 Identities=21% Similarity=0.166 Sum_probs=54.9
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
..+.+.+ ..++|+||||+..|.......++.+|++|+|+|+...-.-+.. .++..+.. ..+|+++++||+|+.
T Consensus 46 ~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 46 RTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 3444444 5788999999999998889999999999999999875443332 23333332 358999999999975
No 206
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.80 E-value=5.9e-08 Score=101.22 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=58.9
Q ss_pred cceeecceeEEEe-cCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh-----
Q psy12559 11 GITIQSAATYTLW-KDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----- 76 (610)
Q Consensus 11 giTi~s~~~~~~~-~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----- 76 (610)
+.|+....-.+.+ ++..|.++||||..+ +..+..+.+..+|++|+|+|+...-..+. +.+...+..
T Consensus 190 fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L 269 (335)
T PRK12299 190 FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL 269 (335)
T ss_pred CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 4577777767777 567899999999753 44566777788999999999985322233 333344443
Q ss_pred cCCCeEEEEecccCCC
Q psy12559 77 YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~ 92 (610)
.++|.++++||+|...
T Consensus 270 ~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 270 ADKPRILVLNKIDLLD 285 (335)
T ss_pred ccCCeEEEEECcccCC
Confidence 3689999999999864
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.79 E-value=1.8e-08 Score=95.35 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=55.3
Q ss_pred EEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHH----hcCCCeEEEEecccCC
Q psy12559 21 TLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
+.+++ ..++|+||||..+|..-....++.+|++|+|+|..+.-..++.. +++.+. ..++|++++.||+|+.
T Consensus 43 ~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 43 ARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 34444 67899999999999988889999999999999998876655533 222222 3579999999999975
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.79 E-value=5.5e-08 Score=93.75 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=51.7
Q ss_pred CeeEEEecCCCCcC----------cHHHHHHHHhh---cCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVD----------FTVEVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~d----------F~~ev~~al~~---~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+..++|+||||+.+ |..-+...++. ++++++|+|+..+....+..+++.+...++|+++++||+|..
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 46899999999642 32333334443 468889999988887777777888888899999999999986
Q ss_pred C
Q psy12559 92 G 92 (610)
Q Consensus 92 ~ 92 (610)
.
T Consensus 149 ~ 149 (196)
T PRK00454 149 K 149 (196)
T ss_pred C
Confidence 3
No 209
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.78 E-value=5.2e-08 Score=90.13 Aligned_cols=73 Identities=25% Similarity=0.299 Sum_probs=55.6
Q ss_pred EEEec--CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 20 YTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~--~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
.+.++ .+.++++||||+.++.......++.+|++++|+|....-. .+...+|..... .++|+++++||+|+..
T Consensus 39 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 39 TIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 34444 4689999999999999999999999999999999876432 123344444432 4799999999999863
No 210
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.78 E-value=3.1e-08 Score=93.30 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=58.6
Q ss_pred cceeEEEecC--eeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHHh----cCCCeEEEEec
Q psy12559 16 SAATYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKR----YDVPCIAFINK 87 (610)
Q Consensus 16 s~~~~~~~~~--~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~~----~~ip~i~~iNK 87 (610)
.....+.+++ +.++++||||+.+|.. -....++.+|++++|+|+......+...-|. .+.. .++|++++.||
T Consensus 39 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 39 FRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 3334455555 6899999999999975 3566678999999999999887777666665 3443 35899999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+.+
T Consensus 119 ~Dl~~ 123 (170)
T cd04115 119 CDLRE 123 (170)
T ss_pred ccchh
Confidence 99763
No 211
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.77 E-value=4.7e-08 Score=91.89 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH-HH-------hcCCCeEEEEeccc
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK-------RYDVPCIAFINKLD 89 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~-~~-------~~~ip~i~~iNKiD 89 (610)
.+.+++ ..+.|+||||+..|.......++.+|++|+|+|....-..+...-|.. .. ..++|++++.||+|
T Consensus 46 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 46 DLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred EEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 344444 567889999999999888889999999999999887654444333321 11 24689999999999
Q ss_pred CC
Q psy12559 90 RL 91 (610)
Q Consensus 90 r~ 91 (610)
..
T Consensus 126 l~ 127 (170)
T cd04116 126 IP 127 (170)
T ss_pred cc
Confidence 75
No 212
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.77 E-value=5.1e-08 Score=88.23 Aligned_cols=69 Identities=23% Similarity=0.200 Sum_probs=58.8
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-----HHHHhcCCCeEEEEecccCCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-----~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
+..++++||||+.++.......++.+|++++|+|+..+...+....| ......++|+++++||+|....
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 77899999999999999888999999999999999998776666544 3445678999999999998743
No 213
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.77 E-value=5.8e-08 Score=102.08 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=56.3
Q ss_pred cceeecceeEEEe-cCeeEEEecCCCCc-CcHH-------HHHHHHhhcCEEEEEEecCCCcchhhH----HHHHHHHhc
Q psy12559 11 GITIQSAATYTLW-KDHNINIIDTPGHV-DFTV-------EVERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRY 77 (610)
Q Consensus 11 giTi~s~~~~~~~-~~~~inlIDTPGh~-dF~~-------ev~~al~~~D~ailVvDa~~Gv~~qt~----~v~~~~~~~ 77 (610)
+.|++.....+.+ ++..+.|+||||.. +... .+...++.+|++|+|+|+++....+.. .+++.+...
T Consensus 221 ~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~ 300 (351)
T TIGR03156 221 FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAE 300 (351)
T ss_pred ccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC
Confidence 5566666666777 57899999999972 2111 123346789999999999876544332 233333334
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++|+||+|+.
T Consensus 301 ~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 301 DIPQLLVYNKIDLL 314 (351)
T ss_pred CCCEEEEEEeecCC
Confidence 78999999999985
No 214
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.76 E-value=3.6e-08 Score=91.97 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=52.5
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh--cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
....++++||||+..|..-+...++.+|++++|+|....-.... +.+++.+.+ .++|.++++||+|..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 34789999999999998888899999999999999986433222 233344443 368999999999975
No 215
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.76 E-value=5e-08 Score=79.28 Aligned_cols=75 Identities=33% Similarity=0.418 Sum_probs=64.9
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecC--CCeEEEeceEEEeccCcccccCcccCCCEEEEcCC---Cccc
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVR--TDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV---DCAS 335 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~--~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl---~~~~ 335 (610)
.++|++++.+++ |+++++||++|+|++||.+++.+ .....++.+|+... .+++++.||+++++.+. +.++
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~~ 77 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIKI 77 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccCC
Confidence 578899998887 99999999999999999999988 66778899888664 56889999999999876 3889
Q ss_pred CceEe
Q psy12559 336 GDTFV 340 (610)
Q Consensus 336 Gdtl~ 340 (610)
||+++
T Consensus 78 g~~l~ 82 (83)
T cd01342 78 GDTLT 82 (83)
T ss_pred CCEec
Confidence 99886
No 216
>PRK12739 elongation factor G; Reviewed
Probab=98.76 E-value=1.4e-08 Score=116.54 Aligned_cols=72 Identities=39% Similarity=0.727 Sum_probs=69.4
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+.+++++|..+.|..++..+|++++.+||++.+.+|.+++|.+|+||||+|||+++++|+++||+++.+
T Consensus 402 ~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~ 473 (691)
T PRK12739 402 PEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANV 473 (691)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999864
No 217
>PRK00007 elongation factor G; Reviewed
Probab=98.75 E-value=1.4e-08 Score=116.37 Aligned_cols=72 Identities=35% Similarity=0.708 Sum_probs=69.3
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+.+++++|..+.+..++..+|++++.+||++.+.+|.+++|.+|+||||+|||+++++|+++||+++.+
T Consensus 405 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~ 476 (693)
T PRK00007 405 PEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANV 476 (693)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999864
No 218
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.75 E-value=9.5e-09 Score=118.18 Aligned_cols=73 Identities=40% Similarity=0.656 Sum_probs=69.8
Q ss_pred ccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 538 AHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 538 ~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
...|+..++++|..+.+..++..+|++++.|||++.+..|.+|+|.+|+||||+|||+++++|+++||+++.+
T Consensus 386 ~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~ 458 (720)
T TIGR00490 386 ISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVET 458 (720)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceee
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999864
No 219
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.75 E-value=1.5e-08 Score=116.31 Aligned_cols=72 Identities=38% Similarity=0.773 Sum_probs=69.4
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+.+.+++|..+.+..++..+|++++.+||++.+.+|.+|+|.+|+||||+|||+++++|+++||+++.+
T Consensus 403 ~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~ 474 (689)
T TIGR00484 403 PEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANV 474 (689)
T ss_pred CCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999864
No 220
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.75 E-value=8.9e-08 Score=95.95 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=51.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh------------cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR------------YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~------------~~ip~i~~iNKiDr~ 91 (610)
.+.++|+||||+.+|.......++.+|++|+|+|....-.-+. ..+++++.. .++|+|++.||+|+.
T Consensus 47 ~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 47 VYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 3788999999999998776777889999999999987543332 233334332 368999999999975
No 221
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.75 E-value=1.2e-07 Score=93.15 Aligned_cols=80 Identities=24% Similarity=0.135 Sum_probs=59.4
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecc
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKL 88 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKi 88 (610)
|+........|+.+.++|+||||+..|..-....++.+|++|+|+|+..--.-+.. ..|..+.+ .++|+|+|.||+
T Consensus 31 Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 31 TVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred ccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 44333344457788899999999999998888889999999999999874333332 23443332 468999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|+..
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9864
No 222
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.75 E-value=9.8e-08 Score=90.64 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=52.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh----cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~----~~ip~i~~iNKiDr~ 91 (610)
...+.|+||||+..|.......++.+|++|+|+|+.+.-.-+...-| ..... .+.|++++.||+|+.
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 36789999999999999889999999999999999874433333223 33332 368899999999975
No 223
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.75 E-value=6.6e-08 Score=79.68 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=66.5
Q ss_pred CeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEE--EcCC---Ccc
Q psy12559 260 PFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCA 334 (610)
Q Consensus 260 p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~ 334 (610)
||.+.|..++..+.|++..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.++ +.++ +++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v~ 76 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDIS 76 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHCC
Confidence 57788888886557899999999999999999999999988899998733 57799999999998 5676 578
Q ss_pred cCceEe
Q psy12559 335 SGDTFV 340 (610)
Q Consensus 335 ~Gdtl~ 340 (610)
.|++|+
T Consensus 77 ~G~vl~ 82 (83)
T cd03698 77 PGDVLC 82 (83)
T ss_pred CCCEEe
Confidence 999997
No 224
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.75 E-value=9.2e-08 Score=91.99 Aligned_cols=66 Identities=26% Similarity=0.382 Sum_probs=51.8
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh------cCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR------YDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~------~~ip~i~~iNKiDr~ 91 (610)
..++|+||||+.+|.......++.+|++|+|+|....-.... ..++..+.. .++|+|++.||+|+.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 458899999999999988899999999999999987543333 333343332 468999999999975
No 225
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.74 E-value=8.2e-08 Score=91.21 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=53.9
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHH----hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
++.++|+||||+.+|.......+..+|++++|+|...+...+... +|+... ..++|.|+++||+|..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 467899999999999988889999999999999999876555433 333332 3478999999999975
No 226
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.74 E-value=1.1e-07 Score=101.78 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=55.9
Q ss_pred cceeecceeEEEec-CeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCC--cc--hhhHHHHHHHHh--
Q psy12559 11 GITIQSAATYTLWK-DHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGG--VQ--SQTLTVNRQMKR-- 76 (610)
Q Consensus 11 giTi~s~~~~~~~~-~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~G--v~--~qt~~v~~~~~~-- 76 (610)
+.|+....-.+.+. +..++|+||||... +..+..+.+..+|++|+|||++.. -. .+-+.+.+.+..
T Consensus 190 fTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~ 269 (424)
T PRK12297 190 FTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN 269 (424)
T ss_pred cceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc
Confidence 45666655566666 78999999999753 334556667779999999999742 12 222334444443
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.++|.++++||+|..
T Consensus 270 ~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 270 PRLLERPQIVVANKMDLP 287 (424)
T ss_pred hhccCCcEEEEEeCCCCc
Confidence 378999999999964
No 227
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.74 E-value=1.2e-07 Score=102.86 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=56.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC---Ccc--hhhHHHHHHH---
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG---GVQ--SQTLTVNRQM--- 74 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~---Gv~--~qt~~v~~~~--- 74 (610)
-+.|+....-.+.+++..|.|+||||..+ ...+..+.+.-+|++|+|||++. +-. .+-..+.+.+
T Consensus 190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 35677777777788899999999999653 22345666778999999999974 111 1112222222
Q ss_pred -----------HhcCCCeEEEEecccCC
Q psy12559 75 -----------KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 75 -----------~~~~ip~i~~iNKiDr~ 91 (610)
...+.|+|+++||+|..
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccch
Confidence 22468999999999976
No 228
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.74 E-value=5.9e-08 Score=90.49 Aligned_cols=66 Identities=27% Similarity=0.292 Sum_probs=50.7
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
..++|+||||+..|..-....++.+|++|+|+|.++.-.-+. ..+++.+.+ .++|++++.||+|..
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 467889999999998888888899999999999987543222 223333332 579999999999974
No 229
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.73 E-value=7.1e-08 Score=95.00 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=53.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH--hcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK--RYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~--~~~ip~i~~iNKiDr~ 91 (610)
+...++|+||||+.+|..-....++.+|++|+|+|.+..-.-+...-| +.+. ..++|+++|.||+|+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 457899999999999987777778999999999999987655544334 3332 2479999999999974
No 230
>PRK13351 elongation factor G; Reviewed
Probab=98.73 E-value=1.8e-08 Score=115.75 Aligned_cols=73 Identities=34% Similarity=0.608 Sum_probs=69.7
Q ss_pred ccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 538 AHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 538 ~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
...|+.+.+++|..+.+..++..+|+++..+||++.+..|.+|+|.+|+||||+|||+++++|+++||+++.+
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~ 472 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNT 472 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEe
Confidence 4669999999999999999999999999999999999999999999999999999999999999999999864
No 231
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.73 E-value=9.2e-08 Score=90.26 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=50.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHhcC----CCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKRYD----VPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~~~----ip~i~~iNKiDr~ 91 (610)
...++|+||||...|..-....++.+|++++|+|+...-..+.. .+++...+.. .|++++.||+|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 36799999999999998888889999999999999764323222 2333333332 4578999999975
No 232
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.72 E-value=1.6e-08 Score=116.63 Aligned_cols=72 Identities=42% Similarity=0.682 Sum_probs=69.2
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.|..++..+|+++++|||++++..|++|+|.+|+||||+|||+++++|+++||+++.+
T Consensus 387 p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~ 458 (731)
T PRK07560 387 SEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVT 458 (731)
T ss_pred CCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEe
Confidence 569999999999999999999999999999999999999999999999999999999999999999999864
No 233
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.72 E-value=8.5e-08 Score=90.47 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=51.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHH--hcCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMK--RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~--~~~ip~i~~iNKiDr~~ 92 (610)
.+.++++||||+.+|.......++.+|++|+|+|..+.-..+.. .+.+.+. ..++|++++.||+|+..
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 45688999999999988777788899999999999875443332 1222222 35899999999999763
No 234
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.72 E-value=2.1e-08 Score=110.71 Aligned_cols=71 Identities=17% Similarity=0.366 Sum_probs=68.1
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|...++++|+.+.+..++..+|+++++||| +.+.+|.++++.+|.|||++||||++++|+++||+++.|
T Consensus 391 ~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~~ 461 (527)
T TIGR00503 391 FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEARY 461 (527)
T ss_pred CCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEEE
Confidence 56899999999999999999999999999998 899999999999999999999999999999999999875
No 235
>PRK13768 GTPase; Provisional
Probab=98.71 E-value=1.7e-07 Score=94.31 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=49.0
Q ss_pred eeEEEecCCCCcCcHH---H---HHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHH-----hcCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGHVDFTV---E---VERALRV--LDGAILVLCAVGGVQSQTLTVNRQMK-----RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~---e---v~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~-----~~~ip~i~~iNKiDr~~ 92 (610)
..+.+|||||..++.. . ..+.+.. .|++++|+|+..+.+..+........ +.++|+++++||+|...
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 4789999999877432 2 2233333 89999999999887776644433222 57999999999999875
Q ss_pred C
Q psy12559 93 A 93 (610)
Q Consensus 93 ~ 93 (610)
.
T Consensus 177 ~ 177 (253)
T PRK13768 177 E 177 (253)
T ss_pred c
Confidence 4
No 236
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.70 E-value=3.1e-07 Score=87.14 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=54.6
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHH-HHHHh--cCCCeEEEEecccCCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~-~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
.+.+++ +.++|+||||+.+|..-....++.+|++|+|+|....-.-+.. ..| ..+.+ .++|+|++.||+|+..
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 41 TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 344455 6788999999999987777788999999999999876544433 234 33332 3689999999999753
No 237
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.68 E-value=2.6e-08 Score=116.35 Aligned_cols=70 Identities=29% Similarity=0.560 Sum_probs=66.8
Q ss_pred CcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc--CCeeEC
Q psy12559 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY--NCPVVL 610 (610)
Q Consensus 540 ~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~--~~~~~~ 610 (610)
.|+..++++|..+.|..++..+|+++..|||++++ .+.+|+|.+|+||||+|||+++++|+++| |+++.+
T Consensus 486 ~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v-~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~ 557 (843)
T PLN00116 486 SPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQC-TIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKV 557 (843)
T ss_pred CceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEE-EEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEE
Confidence 79999999999999999999999999999999998 56899999999999999999999999999 999864
No 238
>PRK11058 GTPase HflX; Provisional
Probab=98.67 E-value=1.5e-07 Score=101.36 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=58.5
Q ss_pred cceeecceeEEEecCe-eEEEecCCCCcCc--------HHHHHHHHhhcCEEEEEEecCCCcchhhH----HHHHHHHhc
Q psy12559 11 GITIQSAATYTLWKDH-NINIIDTPGHVDF--------TVEVERALRVLDGAILVLCAVGGVQSQTL----TVNRQMKRY 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~-~inlIDTPGh~dF--------~~ev~~al~~~D~ailVvDa~~Gv~~qt~----~v~~~~~~~ 77 (610)
|.|++.....+.|.+. .+.|+||||.... ...+...++.+|++|+|+|+++....... .+++.+...
T Consensus 229 ~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~ 308 (426)
T PRK11058 229 FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH 308 (426)
T ss_pred CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC
Confidence 6777777777777664 8999999998442 11234456789999999999986543332 334444455
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++++||+|+.
T Consensus 309 ~~pvIiV~NKiDL~ 322 (426)
T PRK11058 309 EIPTLLVMNKIDML 322 (426)
T ss_pred CCCEEEEEEcccCC
Confidence 79999999999985
No 239
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=1.9e-07 Score=89.59 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=52.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~iNKiDr~ 91 (610)
+...+.++||||+.+|.......++.+|++|+|+|....-......-| ..... .++|++++.||+|+.
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 346789999999999999999999999999999999875433322223 33332 358899999999976
No 240
>PLN03110 Rab GTPase; Provisional
Probab=98.67 E-value=9e-08 Score=94.08 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=55.6
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
..+.+++ ..++|+||||+..|.......++.+|++|+|+|..+.-.-+.. .+++.+.. .++|++++.||+|+.
T Consensus 52 ~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 3444444 5889999999999999888899999999999999865443333 33344443 479999999999974
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.67 E-value=4e-08 Score=108.46 Aligned_cols=71 Identities=18% Similarity=0.441 Sum_probs=67.6
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|+.+.+..++..+|+++++||+ +.+.+|.+|++.+|.|||++||||+++||+++||+++.+
T Consensus 390 ~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~ 460 (526)
T PRK00741 390 FAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIY 460 (526)
T ss_pred CCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEE
Confidence 45899999999999999999999999999995 999999999999999999999999999999999999875
No 242
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.66 E-value=2.1e-07 Score=89.37 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=53.3
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+..|.......++.+|++|+|+|....-.-+.. .+++++.+ .++|+|++-||+|+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 37889999999999998888888999999999999875544333 34444543 478999999999975
No 243
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.64 E-value=1.4e-07 Score=88.43 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=51.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HH-HHHHHHh--cCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LT-VNRQMKR--YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~-v~~~~~~--~~ip~i~~iNKiDr~~~ 93 (610)
..+.+.++||||+.+|.......++.+|++++|+|+......+. .. ++..... .++|++++.||+|+...
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 35679999999999987666667788999999999987433322 12 2333333 35999999999998743
No 244
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.63 E-value=1.2e-07 Score=89.94 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=60.4
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-chhhHHHHHHHH----hcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMK----RYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~~~----~~~ip~i~~iNK 87 (610)
|+.....++.++++.++++|.+|+..|..-....+..+|++|+|||+.+-- -.+....+..+. ..++|++++.||
T Consensus 45 T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK 124 (175)
T PF00025_consen 45 TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANK 124 (175)
T ss_dssp ESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEES
T ss_pred ccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecc
Confidence 334445567789999999999999888777777888999999999998632 123333333322 347999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
.|..++
T Consensus 125 ~D~~~~ 130 (175)
T PF00025_consen 125 QDLPDA 130 (175)
T ss_dssp TTSTTS
T ss_pred ccccCc
Confidence 998864
No 245
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.62 E-value=3.2e-07 Score=88.29 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=50.0
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc--CCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
..++++||||...|.......++.+|++|+|+|......-+. ..+++.+... ++|++++.||+|+.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 567799999998887777777889999999999987543332 2333444433 68999999999975
No 246
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.61 E-value=2.4e-07 Score=91.01 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=51.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh------cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR------YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~------~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+..|..-....++.+|++|+|+|+...-..+. +.++..+.+ .+.|++++.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 4689999999999988888888999999999999886433332 233344433 235788999999975
No 247
>PRK12740 elongation factor G; Reviewed
Probab=98.61 E-value=6.7e-08 Score=110.93 Aligned_cols=72 Identities=38% Similarity=0.694 Sum_probs=69.0
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|++++.+||++.+..|.+++|.+|+||||+|||+++++|+++||+++.+
T Consensus 384 ~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~ 455 (668)
T PRK12740 384 PEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVET 455 (668)
T ss_pred CCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEe
Confidence 469999999999999999999999999999999999999999999999999999999999999999999864
No 248
>KOG0052|consensus
Probab=98.61 E-value=1.7e-08 Score=103.51 Aligned_cols=92 Identities=32% Similarity=0.348 Sum_probs=81.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-------cchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-------v~~qt~~v~~~ 73 (610)
+|....|++|||||+.+...|....+.+++||.|||.||...+..+.+.+|.|+++|.+..| ...||+++.-.
T Consensus 57 ~dk~~ae~~r~i~I~~~l~~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehall 136 (391)
T KOG0052|consen 57 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 136 (391)
T ss_pred echhhhccccceEEEEEeecccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhh
Confidence 58889999999999999999998999999999999999999999999999999999999332 35899999999
Q ss_pred HHhcCCC-eEEEEecccCCC
Q psy12559 74 MKRYDVP-CIAFINKLDRLG 92 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~ 92 (610)
+..+++. .++-+||||...
T Consensus 137 a~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 137 AFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred hccccceeeeEEeecccccC
Confidence 9888755 478999999863
No 249
>PLN03108 Rab family protein; Provisional
Probab=98.60 E-value=4.4e-07 Score=88.76 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=52.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...++++||||+.+|.......++.+|++|+|+|+...-..+...-| ..+.+ .++|++++.||+|+.
T Consensus 54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 35688999999999998888889999999999999875444433223 32322 478999999999975
No 250
>KOG1423|consensus
Probab=98.60 E-value=3.1e-07 Score=90.87 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=58.7
Q ss_pred ceeecceeEEEecCeeEEEecCCCCc------------CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh-cC
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHV------------DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YD 78 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~------------dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~-~~ 78 (610)
.|.......+.-+.+++.|.||||.+ .|......|+..+|.+++|+|+..--..-.-++++.+.+ .+
T Consensus 106 TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ 185 (379)
T KOG1423|consen 106 TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK 185 (379)
T ss_pred ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc
Confidence 34444445555678999999999943 244468899999999999999986222222346666654 47
Q ss_pred CCeEEEEecccCCC
Q psy12559 79 VPCIAFINKLDRLG 92 (610)
Q Consensus 79 ip~i~~iNKiDr~~ 92 (610)
+|-|++.||+|.+.
T Consensus 186 ips~lvmnkid~~k 199 (379)
T KOG1423|consen 186 IPSILVMNKIDKLK 199 (379)
T ss_pred CCceeeccchhcch
Confidence 99999999999873
No 251
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.60 E-value=6.8e-07 Score=83.07 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=51.5
Q ss_pred eEEEecCCCCcCc----------HHHHHHHHh---hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 27 NINIIDTPGHVDF----------TVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 27 ~inlIDTPGh~dF----------~~ev~~al~---~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.++|||||.+. ...+...++ .++++++|+|.....+.....+++.+...+.|+++++||+|..
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 8999999998663 222222233 4578999999998877887888888888899999999999985
No 252
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.60 E-value=2.9e-07 Score=88.04 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=51.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHH-HHH--hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNR-QMK--RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~-~~~--~~~ip~i~~iNKiDr~ 91 (610)
...+.|+||||+.+|.......++.+|++|+|+|+...-.-+.. ..|. ... ..++|+|++.||.|..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 35789999999999988777788999999999999875444433 2342 222 2478999999999975
No 253
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=6.9e-07 Score=84.30 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=67.5
Q ss_pred cceeecceeEEEecCeeEEEecCCCCc----------CcHHHHHHHHh---hcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHV----------DFTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~----------dF~~ev~~al~---~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
|-|.... .|.|++. +.|+|-||+- .....+..-|+ ...+++++||+..++...++++++.+...
T Consensus 58 GrTq~iN--ff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~ 134 (200)
T COG0218 58 GRTQLIN--FFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL 134 (200)
T ss_pred CccceeE--EEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc
Confidence 4444433 3445443 8999999962 11222333332 46899999999999999999999999999
Q ss_pred CCCeEEEEecccCCCC-CHHHHHHHHHHHhC
Q psy12559 78 DVPCIAFINKLDRLGA-DPYRVINQMRQKVG 107 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~~-~~~~~~~~i~~~l~ 107 (610)
++|+++++||+|.... ...+.+..+++.++
T Consensus 135 ~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 135 GIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred CCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 9999999999999863 34445566665554
No 254
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.59 E-value=3.8e-07 Score=87.12 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=49.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...++++||+|+..|..-....++.+|++++|+|+++--..+.. .+++++.+ .+.| |++.||+|+.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 36789999999999988888889999999999998874433332 23344443 2345 7889999985
No 255
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.58 E-value=4e-07 Score=86.25 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=52.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHH-HHHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~-~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...++|+||||..+|..-....++.+|++|+|+|...--.-+.. ..| +.+.. .++|+|++.||+|+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 46788999999999988778888999999999999875444433 234 33332 3689999999999853
No 256
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.57 E-value=3.3e-07 Score=86.56 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=52.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHHHHHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+..|..-....++.+|++|+|+|..+--.-+. +.++.++.+ .++|++++.||+|+.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 3578899999999988777778889999999999987543332 344555543 468999999999975
No 257
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.57 E-value=4.4e-07 Score=74.60 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=63.8
Q ss_pred CeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---Ccc
Q psy12559 260 PFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCA 334 (610)
Q Consensus 260 p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~ 334 (610)
||.+.|..++... |++..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.+++ .++ +++
T Consensus 1 plr~~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~i~~~~v~ 75 (82)
T cd04089 1 PLRLPIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRLRLKGIEEEDIS 75 (82)
T ss_pred CeEEEEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEEEecCCCHHHCC
Confidence 5677777777654 899999999999999999999999988899998733 467999999999985 555 578
Q ss_pred cCceEe
Q psy12559 335 SGDTFV 340 (610)
Q Consensus 335 ~Gdtl~ 340 (610)
.|+.|+
T Consensus 76 ~G~vl~ 81 (82)
T cd04089 76 PGFVLC 81 (82)
T ss_pred CCCEEe
Confidence 899887
No 258
>KOG0464|consensus
Probab=98.56 E-value=8.9e-08 Score=97.53 Aligned_cols=70 Identities=33% Similarity=0.637 Sum_probs=66.2
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCee
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPV 608 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~ 608 (610)
..|+-.+.++|+....++.+-.+|+.+..|||++.+..|+.++|+++.||||+|+|++.+++++.||+++
T Consensus 454 pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey~ldt 523 (753)
T KOG0464|consen 454 PDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREYGLDT 523 (753)
T ss_pred CCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhcCchh
Confidence 3478889999998888999999999999999999999999999999999999999999999999999985
No 259
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.56 E-value=4.6e-07 Score=85.44 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=50.5
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
..+.++||||+.+|.......++.+|++|+|+|....-.-+.. .++....+ .++|+|++.||+|+.
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 4689999999999988777788899999999998864322222 23344433 389999999999986
No 260
>PTZ00416 elongation factor 2; Provisional
Probab=98.55 E-value=9.8e-08 Score=111.31 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=66.4
Q ss_pred CcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc-CCeeEC
Q psy12559 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVL 610 (610)
Q Consensus 540 ~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~-~~~~~~ 610 (610)
.|+.+++++|..+.|..++..+|+++..|||++.+. +.+|+|.+|+||||+|||+++++|+++| ++++.+
T Consensus 480 ~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~-~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~ 550 (836)
T PTZ00416 480 SPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCT-TEESGEHIVAGCGELHVEICLKDLEDDYANIDIIV 550 (836)
T ss_pred CCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEE-EcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEe
Confidence 799999999999999999999999999999999885 5899999999999999999999999999 899864
No 261
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.55 E-value=4e-07 Score=87.47 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=52.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~~~ 93 (610)
...++|+||||+.+|..-....++.+|++|+|.|...--.-+.. .++..+.. .++|++++.||+|+...
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 46899999999999877666677899999999998775444433 23344443 37899999999998643
No 262
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.54 E-value=3.7e-07 Score=88.82 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=58.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhc-CEEEEEEecCCCcc--hhhHHHHHH----HH--hcCCCeEEEEecccCCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVL-DGAILVLCAVGGVQ--SQTLTVNRQ----MK--RYDVPCIAFINKLDRLGAD 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~-D~ailVvDa~~Gv~--~qt~~v~~~----~~--~~~ip~i~~iNKiDr~~~~ 94 (610)
++..+.|+|||||.+|.......++.+ +++|+|+|+..... ..+...|.. .. ..++|++++.||+|...+.
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 468899999999999999999999998 99999999998631 122222222 11 2489999999999998654
Q ss_pred HH-HHHHHHHH
Q psy12559 95 PY-RVINQMRQ 104 (610)
Q Consensus 95 ~~-~~~~~i~~ 104 (610)
.. .+.+.+.+
T Consensus 126 ~~~~i~~~le~ 136 (203)
T cd04105 126 PAKKIKEQLEK 136 (203)
T ss_pred CHHHHHHHHHH
Confidence 43 33334433
No 263
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.54 E-value=4.1e-07 Score=95.83 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=68.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHH--------HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e--------v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
-|.|.+.-...+..+|+.+.|+||.|..+-... ...++..+|.+++|+|+.++...+...++. +...+.|+
T Consensus 249 ~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~ 327 (454)
T COG0486 249 AGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPI 327 (454)
T ss_pred CCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCE
Confidence 377888888899999999999999996543332 345667899999999999998888877777 56778999
Q ss_pred EEEEecccCCCC
Q psy12559 82 IAFINKLDRLGA 93 (610)
Q Consensus 82 i~~iNKiDr~~~ 93 (610)
++++||.|+...
T Consensus 328 i~v~NK~DL~~~ 339 (454)
T COG0486 328 IVVLNKADLVSK 339 (454)
T ss_pred EEEEechhcccc
Confidence 999999998754
No 264
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=5.2e-07 Score=83.77 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 42 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 42 ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.....++.+|.+|+|+|+.++...+...+.+.+...++|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 34566677999999999999888888777777777789999999999975
No 265
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.51 E-value=9.7e-07 Score=86.41 Aligned_cols=66 Identities=17% Similarity=0.086 Sum_probs=49.5
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
..++++||||+..|.......++.+|++|+|+|....-.-+. ..+++.+.+ .+.|.+++.||+|+.
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 578999999999998888888999999999999987432222 223333332 346678899999975
No 266
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.50 E-value=3.7e-07 Score=82.33 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=47.8
Q ss_pred EEecCCC----CcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 29 NIIDTPG----HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 29 nlIDTPG----h~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
++||||| +..|..-.......+|.+++|.||++.-+.-. -..+..++.|+|-||||+|+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 6799999 66777778888889999999999997543222 234556789999999999998
No 267
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.48 E-value=7.9e-07 Score=83.89 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=48.9
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHH-HHHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN-RQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~-~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...+.|+||||+.+|..-....++.+|++++|.|...--.-+. ...| ..+.+ .++|++++.||+|...
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 3568999999999988766677889999999999875322111 1223 23332 4899999999999763
No 268
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.48 E-value=6.6e-07 Score=88.25 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=48.0
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHh-hcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALR-VLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~-~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
.....++|+||||+.++.. ...++ .+|++++|+|+.+.-..+. ..++..+.+ .++|+|+|.||+|..
T Consensus 47 ~~~~~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 47 GEESTLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred CEEEEEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 3567899999999984433 23556 8999999999987543332 233344433 478999999999975
No 269
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.48 E-value=9.4e-07 Score=83.88 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=53.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
..+++++||+|+..|..-....++.+|++|+|.|...--.-+.. .+++.+++ .++|+|++.||+|+.
T Consensus 48 ~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 48 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 46789999999999998888889999999999999865444432 34444442 479999999999975
No 270
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.47 E-value=9e-07 Score=83.39 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=52.4
Q ss_pred EEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH-hcCCCeEEEEecccCC
Q psy12559 21 TLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK-RYDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~-~~~ip~i~~iNKiDr~ 91 (610)
+.+++ ..++++||+|...|.......++.+|++|+|+|+.+.-.-+. ..+++... ..++|+++++||+|..
T Consensus 47 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 47 VEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred EEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 44445 568899999999987777777899999999999977532221 23444432 2479999999999975
No 271
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.47 E-value=1.2e-06 Score=84.39 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=52.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHH-HHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNR-QMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~-~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...++++||||+..|..-....++.+|++|+|.|...--.-+... .|. .+.. .++|++++.||.|+..
T Consensus 50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 467899999999999887777889999999999998754444432 343 2322 4799999999999853
No 272
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.44 E-value=2.6e-06 Score=79.51 Aligned_cols=72 Identities=21% Similarity=0.139 Sum_probs=52.5
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh---cCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
.+..++ ..++++||||...|.......++.+|++++|+|...--.-+... +++.+.. .++|++++.||+|..
T Consensus 41 ~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 41 TIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 344444 57889999999999988888999999999999987643222222 2222222 368999999999975
No 273
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.43 E-value=2.6e-06 Score=84.68 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=63.4
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC-----
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV----- 79 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i----- 79 (610)
.|+......+.+++..++++||||+.+ +..++...++.+|++++|+|+...- .|-..+++.+...|+
T Consensus 33 tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi~l~~~ 111 (233)
T cd01896 33 TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGIRLNKR 111 (233)
T ss_pred ccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCceecCC
Confidence 344445556778899999999999864 3346778899999999999998643 355566777766554
Q ss_pred CeEE-----------EEecccCCCCCHHHHHHHHHHHhCC
Q psy12559 80 PCIA-----------FINKLDRLGADPYRVINQMRQKVGH 108 (610)
Q Consensus 80 p~i~-----------~iNKiDr~~~~~~~~~~~i~~~l~~ 108 (610)
|..+ +.+|.|..+++.+.+.. +-+.++.
T Consensus 112 ~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~-~l~~~~i 150 (233)
T cd01896 112 PPNITIKKKKKGGINITSTVPLTKLDEKTIKA-ILREYKI 150 (233)
T ss_pred CCeEEEEEEecCCEEEeccCCCCCCCHHHHHH-HHHHhCe
Confidence 2222 33466666677544444 4445554
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.38 E-value=2.1e-06 Score=79.86 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=42.7
Q ss_pred HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeEEEEecccCC
Q psy12559 42 EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 42 ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
++.+++..+|.+++|+|+..+...+.+.+.+.+... ++|+|+++||+|+.
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 367899999999999999998877888888777653 48999999999985
No 275
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=3.3e-06 Score=83.60 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=52.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHH-HHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN-RQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~-~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...++|+||||...|..-....++.+|++|+|.|.+..-.-+. ...| ..+.+ .+.|+|+|.||+|+.
T Consensus 60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 4678999999999998877788899999999999987655443 2233 44443 368999999999974
No 276
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.9e-06 Score=94.59 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=60.7
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH-----HH-HHHH--hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV-----EV-ERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 82 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~-----ev-~~al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i 82 (610)
|.|+.-....+.++++.|.++|.||--++.. .+ ...+ ...|..|-|+||+. -.....+--|+.+.++|+|
T Consensus 35 GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~i 112 (653)
T COG0370 35 GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMI 112 (653)
T ss_pred CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeE
Confidence 8899999999999999999999999765533 12 2222 24699999999975 2233334457788999999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++|++|..
T Consensus 113 laLNm~D~A 121 (653)
T COG0370 113 LALNMIDEA 121 (653)
T ss_pred EEeccHhhH
Confidence 999999965
No 277
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.36 E-value=2.6e-06 Score=70.15 Aligned_cols=75 Identities=27% Similarity=0.286 Sum_probs=61.8
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---Cccc
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCAS 335 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~ 335 (610)
.+.|..++..++ |.+..|||.+|++++|+++.+.+.+...+|++|.. ...++++|.|||.+++ .++ ++..
T Consensus 2 r~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~----~~~~~~~a~aGd~v~i~l~~~~~~~i~~ 77 (83)
T cd03696 2 RLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV----HGKDVEEAKAGDRVALNLTGVDAKDLER 77 (83)
T ss_pred EEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEE----CCcCcCEEcCCCEEEEEEcCCCHHHcCC
Confidence 456677776666 88999999999999999999999888888999873 3567899999999985 555 5678
Q ss_pred CceEe
Q psy12559 336 GDTFV 340 (610)
Q Consensus 336 Gdtl~ 340 (610)
||+|+
T Consensus 78 G~vl~ 82 (83)
T cd03696 78 GDVLS 82 (83)
T ss_pred ccEEc
Confidence 98887
No 278
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.36 E-value=4.3e-06 Score=80.84 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=64.4
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcH-------HHHHHHH----hhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------VEVERAL----RVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~-------~ev~~al----~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.+|.|.........|+++.+++|||||..|+. .++.+++ ...|++|+|+|+.. .....+.+++.+++.
T Consensus 32 ~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~ 110 (196)
T cd01852 32 ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQEL 110 (196)
T ss_pred CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHH
Confidence 45788888888899999999999999988763 2333333 34689999999887 777778888777653
Q ss_pred -C----CCeEEEEecccCCC
Q psy12559 78 -D----VPCIAFINKLDRLG 92 (610)
Q Consensus 78 -~----ip~i~~iNKiDr~~ 92 (610)
+ .++|+++||.|...
T Consensus 111 fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 111 FGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred hChHhHhcEEEEEECccccC
Confidence 2 57789999999774
No 279
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.35 E-value=1.8e-06 Score=75.76 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=60.8
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcC---------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~d---------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
.+.|.....-.+.+++..+.|+||||..+ ...+..+.++.+|.+++|+|+......+...++++++ .+.|
T Consensus 31 ~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~ 109 (116)
T PF01926_consen 31 PGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP 109 (116)
T ss_dssp TTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE
T ss_pred ccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC
Confidence 35566665556678899999999999765 2334667778899999999988855566778888886 8999
Q ss_pred eEEEEec
Q psy12559 81 CIAFINK 87 (610)
Q Consensus 81 ~i~~iNK 87 (610)
+++++||
T Consensus 110 ~i~v~NK 116 (116)
T PF01926_consen 110 IILVLNK 116 (116)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 9999998
No 280
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.33 E-value=3.6e-06 Score=69.93 Aligned_cols=75 Identities=19% Similarity=0.113 Sum_probs=60.4
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--C--eEEEeceEEEeccCcccccCcccCCCEEEE--cCC---
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--D--KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 331 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~--~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--- 331 (610)
.+.|..++..++ |++..|||.+|++++||++++.+. + ...+|++|.. +..++++|.|||.+++ .++
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~ 77 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDRS 77 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCCCHH
Confidence 345666666666 999999999999999999999887 3 5678888873 3667899999999985 565
Q ss_pred CcccCceEe
Q psy12559 332 DCASGDTFV 340 (610)
Q Consensus 332 ~~~~Gdtl~ 340 (610)
++++|++|+
T Consensus 78 ~i~~G~vl~ 86 (87)
T cd03694 78 LLRKGMVLV 86 (87)
T ss_pred HcCCccEEe
Confidence 578899887
No 281
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.33 E-value=5e-06 Score=81.53 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=54.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHH--hcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMK--RYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~--~~~ip~i~~iNKiDr~ 91 (610)
+...++++||||+.+|..-....++.+|++++|+|..+....++..-|. .+. ..++|++++.||+|..
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 4678999999999999877777788999999999999877666654442 221 2578999999999975
No 282
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.31 E-value=4.1e-06 Score=79.66 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=51.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-H-HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-L-TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~-~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...++++||||+..|..-....++.+|++|+|.|.+..-.-+. . .++..+.+ .++|+|++.||+|+.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 3568899999999998777778899999999999987554444 2 23333433 378999999999975
No 283
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.31 E-value=4.7e-06 Score=68.23 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=60.2
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCc
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGD 337 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gd 337 (610)
.+.|..++.... |+.+.|||.+|++++||+|++.+.+...+|++|... ..+++.|.|||.+++ .+- ++++|+
T Consensus 2 r~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i~~G~ 77 (81)
T cd03695 2 RFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF----DGELDEAGAGESVTLTLEDEIDVSRGD 77 (81)
T ss_pred EeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC----CcEeCEEcCCCEEEEEECCccccCCCC
Confidence 345566665544 678999999999999999999999988899999733 567899999999986 333 578899
Q ss_pred eEe
Q psy12559 338 TFV 340 (610)
Q Consensus 338 tl~ 340 (610)
+||
T Consensus 78 vl~ 80 (81)
T cd03695 78 VIV 80 (81)
T ss_pred EEe
Confidence 887
No 284
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.30 E-value=6.3e-06 Score=78.67 Aligned_cols=67 Identities=9% Similarity=0.021 Sum_probs=52.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHH-HHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~-~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...+.|+||+|...|..-....++.+|++|+|.|.+..-.-+.. .-| +.+++ .+.|+|++.||+|+.
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 45789999999999988777888999999999999876554442 333 34433 368999999999974
No 285
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.29 E-value=3.6e-06 Score=69.97 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCC--CeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---Cc
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRT--DKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DC 333 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~--~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~ 333 (610)
.+.|..++..++ |++..|||.+|+++.||+|.+.+. +...+|++|.. +..++++|.|||.+++ .++ ++
T Consensus 2 r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~----~~~~~~~a~~G~~v~l~l~~~~~~~v 77 (87)
T cd03697 2 LMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEM----FRKTLDEAEAGDNVGVLLRGVKREDV 77 (87)
T ss_pred EeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEE----CCcCCCEECCCCEEEEEECCCCHHHc
Confidence 455666666566 889999999999999999998764 45677888873 3567899999999985 555 57
Q ss_pred ccCceEe
Q psy12559 334 ASGDTFV 340 (610)
Q Consensus 334 ~~Gdtl~ 340 (610)
..|+.|+
T Consensus 78 ~rG~vl~ 84 (87)
T cd03697 78 ERGMVLA 84 (87)
T ss_pred CCccEEe
Confidence 8899998
No 286
>KOG0070|consensus
Probab=98.25 E-value=8.2e-06 Score=75.56 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=64.2
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc--chhhHHHHHHHHh---cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV--QSQTLTVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv--~~qt~~v~~~~~~---~~ip~i~~iNK 87 (610)
||...+-++.+++..++++|.-|+..+..-.....+..+++|+|||+++-- ..--+++.+.... .+.|.+++.||
T Consensus 48 TiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNK 127 (181)
T KOG0070|consen 48 TIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANK 127 (181)
T ss_pred ccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEech
Confidence 667778888999999999999999888888888999999999999998632 1212334444432 47899999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
.|..++
T Consensus 128 qD~~~a 133 (181)
T KOG0070|consen 128 QDLPGA 133 (181)
T ss_pred hhcccc
Confidence 998864
No 287
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.25 E-value=1.4e-06 Score=97.98 Aligned_cols=70 Identities=27% Similarity=0.574 Sum_probs=65.0
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEe-----ccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~g-----mge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..+.+.|..+.+..++..+|++++.+||++.+. +++++..+.| ||++||||+.++|+++||+++.+
T Consensus 294 ~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~ 368 (600)
T PRK05433 294 VKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLIT 368 (600)
T ss_pred CCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEE
Confidence 5689999999999999999999999999999999886 6789988888 99999999999999999999864
No 288
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.24 E-value=8e-06 Score=78.87 Aligned_cols=66 Identities=21% Similarity=0.147 Sum_probs=47.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHH-HHHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVN-RQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~-~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...++|+||+|..+.. ....++.+|++|+|.|...--.-+.. ..| +.+++ .++|+|++.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 5789999999987532 23457899999999999875444433 234 44433 3689999999999753
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.19 E-value=5.1e-06 Score=86.15 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=43.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH--HHHHHHhcCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT--VNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~--v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
.++.+.||||+|.-. .++. ....+|.+++|++...|-..|... +++.+ -|+++||+|+...
T Consensus 147 ~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~~~ 209 (332)
T PRK09435 147 AGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGDNK 209 (332)
T ss_pred cCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhcccch
Confidence 468999999999873 3333 577899999998866665555532 33333 3899999998753
No 290
>KOG0075|consensus
Probab=98.15 E-value=3.3e-05 Score=68.43 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=56.1
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc--ch---hhHHHHHHHHhcCCCeEEEEecccCCCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV--QS---QTLTVNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv--~~---qt~~v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
-++..|-++|.||...|..-.++--|.+|+.+.+|||.+.- +. .-..++....-.++|.++.-||+|+.+|
T Consensus 62 kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 34678999999999999999999999999999999998721 11 1122333334468999999999999865
No 291
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.15 E-value=3.3e-06 Score=94.91 Aligned_cols=70 Identities=26% Similarity=0.468 Sum_probs=63.0
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEE-----eccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVS-----GMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~-----gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..+.+.|..+.+..++..+|++++.+||++.+.. ++++..+. |||++||||+.++|+++||+++.+
T Consensus 290 ~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~ 364 (595)
T TIGR01393 290 VKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEP--ESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLIT 364 (595)
T ss_pred CCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEe--cCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEE
Confidence 55899999999999999999999999999999999974 67876666 499999999999999999999864
No 292
>KOG0094|consensus
Probab=98.13 E-value=2.9e-05 Score=72.30 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=56.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC-CcchhhHHHHHHHHhcCCC----eEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVP----CIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~~ip----~i~~iNKiDr~~ 92 (610)
..+++.|+||.|...|..-+-+.+|.++.||+|.|... +--.+|..+++-+++++=+ +++|-||-|+..
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 34678999999999999999999999999999999875 3346788888888765433 458899999873
No 293
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.13 E-value=3.3e-05 Score=71.88 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=49.2
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
++.+++ ..+.++||+|..+. ...+.+|++++|.|..+--.-|. ..+++.+.. .++|++++.||+|+.
T Consensus 39 ~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 39 EVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 344555 66899999999763 34577999999999988665555 445555543 358999999999964
No 294
>KOG0078|consensus
Probab=98.11 E-value=3.3e-05 Score=73.18 Aligned_cols=74 Identities=22% Similarity=0.105 Sum_probs=57.2
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH---hcCCCeEEEEecccCCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~---~~~ip~i~~iNKiDr~~ 92 (610)
+.+.-...++.+|||.|...|..-+.+.+|.++|+++|+|......-.-..-| +.++ ..++|.+++-||+|...
T Consensus 54 i~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 54 IELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred EEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 33333456789999999999999999999999999999999876554443334 3333 34789999999999863
No 295
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.08 E-value=2e-05 Score=75.47 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=46.8
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
..++++||||+.+|..-....++.+|+++++.|....-..+.. .++..+.+ .++|+|++.||+|+.
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 4578999999988765444567889999999998654333222 23333332 369999999999975
No 296
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.07 E-value=3.6e-05 Score=75.79 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=52.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHH-HH--hcCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQ-MK--RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~-~~--~~~ip~i~~iNKiDr~~ 92 (610)
...++|+||+|...|..-....++.+|++|+|+|..+.-.-+.. ..|.. .. ..++|+|++.||+|+..
T Consensus 48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 45788899999999988888888999999999999876433332 34432 22 24789999999999853
No 297
>KOG0072|consensus
Probab=98.07 E-value=1.6e-05 Score=70.23 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=58.6
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHH---HHHHHhcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTV---NRQMKRYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v---~~~~~~~~ip~i~~iNK 87 (610)
||..+..++.+++-+++++|--|......-........|..|.|||..+--+-.+ ..+ ++.-+-.+-..++|.||
T Consensus 49 tigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anK 128 (182)
T KOG0072|consen 49 TIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANK 128 (182)
T ss_pred CCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEecc
Confidence 4555666777889999999999998888888888899999999999986433222 122 22222345566799999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|-.+
T Consensus 129 qD~~~ 133 (182)
T KOG0072|consen 129 QDYSG 133 (182)
T ss_pred ccchh
Confidence 99764
No 298
>KOG0084|consensus
Probab=98.07 E-value=2.2e-05 Score=73.34 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred CChHHHHHhcceeecceeEEEecCe--eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh--
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-- 76 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~--~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~-- 76 (610)
|..+++...-|-++....+++..+. ++.++||.|...|...+....|.++|+|+|.|.++--.-+....| ..+++
T Consensus 32 ~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~ 111 (205)
T KOG0084|consen 32 DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA 111 (205)
T ss_pred CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc
Confidence 4556777777778888888877664 689999999999999999999999999999999874333333333 33443
Q ss_pred -cCCCeEEEEecccCC
Q psy12559 77 -YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 -~~ip~i~~iNKiDr~ 91 (610)
.++|.+++-||.|..
T Consensus 112 ~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 112 SENVPKLLVGNKCDLT 127 (205)
T ss_pred cCCCCeEEEeeccccH
Confidence 478999999999976
No 299
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.06 E-value=7.6e-06 Score=91.79 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=61.1
Q ss_pred cCcceeeeeecccc---cch------hhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeE
Q psy12559 539 HDPVVSMSIKAVNN---KDR------DNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 609 (610)
Q Consensus 539 ~~~~~~~~v~a~~~---~~~------~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~ 609 (610)
..|+..+.+.+... .+. .++..+|.+++++||++.+..+.++++.+|+|||++||+|+.++|+++ |+++.
T Consensus 299 ~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~ 377 (594)
T TIGR01394 299 DEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE-GFELQ 377 (594)
T ss_pred CCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc-CceEE
Confidence 55888888887643 222 248999999999999999999999999999999999999999999999 99886
Q ss_pred C
Q psy12559 610 L 610 (610)
Q Consensus 610 ~ 610 (610)
+
T Consensus 378 ~ 378 (594)
T TIGR01394 378 V 378 (594)
T ss_pred E
Confidence 3
No 300
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.06 E-value=2e-05 Score=74.43 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=44.5
Q ss_pred CCCc-CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 34 PGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 34 PGh~-dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|||- .-..++..++..+|.+++|+|+.++.......+.+.. .+.|+++++||+|..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 6763 3456788999999999999999988776666665543 368999999999975
No 301
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=2.1e-05 Score=80.34 Aligned_cols=56 Identities=27% Similarity=0.338 Sum_probs=46.0
Q ss_pred CCCc-CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 34 PGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 34 PGh~-dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|||. ....++..++..+|.+++|+||..+.......+.+.+ .+.|+|+++||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8885 3556789999999999999999988777766666655 378999999999974
No 302
>KOG0469|consensus
Probab=98.03 E-value=8.7e-06 Score=85.24 Aligned_cols=70 Identities=33% Similarity=0.593 Sum_probs=64.3
Q ss_pred ccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc-CCee
Q psy12559 538 AHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPV 608 (610)
Q Consensus 538 ~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~-~~~~ 608 (610)
.-.|+.+.+++++++.|++++.+.|++++.+||+..+..+ +++|.+|.|-||+||||+++.|++.| ++.+
T Consensus 484 SVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~-esGehiiAgaGeLHLEICLkDLeedhA~iPl 554 (842)
T KOG0469|consen 484 SVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPL 554 (842)
T ss_pred eccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEec-cCCceEEeccchhhHHHHHhhHhhcccCCce
Confidence 3569999999999999999999999999999999999886 68999999999999999999999998 5544
No 303
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.02 E-value=3.8e-05 Score=74.27 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=47.3
Q ss_pred eeEEEecCCCCcCcHH---HHH--HHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTV---EVE--RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~---ev~--~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
..+.++||||..++.. +.. ..+..+|..++|.| .........+++.+++.+.|+++|+||+|+.
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 4789999999865422 221 22456788777654 4567777788888888899999999999985
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.02 E-value=2.7e-05 Score=72.20 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=34.5
Q ss_pred CEEEEEEecCCCcchhhHHHH-HHHHhcCCCeEEEEecccCC
Q psy12559 51 DGAILVLCAVGGVQSQTLTVN-RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~-~~~~~~~ip~i~~iNKiDr~ 91 (610)
|.+++|+|+.++...+...+. ..+...++|+|+++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999988777766666 46667899999999999975
No 305
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.02 E-value=4.2e-05 Score=71.02 Aligned_cols=68 Identities=26% Similarity=0.284 Sum_probs=51.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~iNKiDr~ 91 (610)
....+.|+||||+..|.......++.+|++|+|.|....-.-+...-| ..+.. .+.|++++.||.|..
T Consensus 46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 446799999999999988888889999999999998765443333333 33332 247888999999976
No 306
>COG2262 HflX GTPases [General function prediction only]
Probab=98.01 E-value=4.9e-05 Score=78.99 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=54.7
Q ss_pred eeecceeEEEec-CeeEEEecCCCCcCc-HH-------HHHHHHhhcCEEEEEEecCCC-cchhhHHHHHHHHh---cCC
Q psy12559 13 TIQSAATYTLWK-DHNINIIDTPGHVDF-TV-------EVERALRVLDGAILVLCAVGG-VQSQTLTVNRQMKR---YDV 79 (610)
Q Consensus 13 Ti~s~~~~~~~~-~~~inlIDTPGh~dF-~~-------ev~~al~~~D~ailVvDa~~G-v~~qt~~v~~~~~~---~~i 79 (610)
|.+...-.+.+. +..+.|-||-|+.+= -. -+......+|..+.|||+++. +..|-+.+.+.+.+ ..+
T Consensus 226 TLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~ 305 (411)
T COG2262 226 TLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEI 305 (411)
T ss_pred cccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCC
Confidence 445555556665 689999999998641 11 233344568999999999975 34444444444443 568
Q ss_pred CeEEEEecccCC
Q psy12559 80 PCIAFINKLDRL 91 (610)
Q Consensus 80 p~i~~iNKiDr~ 91 (610)
|+|++.||+|+.
T Consensus 306 p~i~v~NKiD~~ 317 (411)
T COG2262 306 PIILVLNKIDLL 317 (411)
T ss_pred CEEEEEeccccc
Confidence 999999999987
No 307
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.00 E-value=1.3e-05 Score=75.57 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=47.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHH---HhhcCEEEEEEecCCCcchhhHHH-------HHHHH--hcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERA---LRVLDGAILVLCAVGGVQSQTLTV-------NRQMK--RYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~a---l~~~D~ailVvDa~~Gv~~qt~~v-------~~~~~--~~~ip~i~~iNKiDr~ 91 (610)
++..+.+||+|||..+..+.... +..+-++|+|||++. ...+-+.+ +.... ..++|++++.||.|..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 45689999999999998887776 889999999999974 22222222 22222 3678889999999998
Q ss_pred CCCHH
Q psy12559 92 GADPY 96 (610)
Q Consensus 92 ~~~~~ 96 (610)
.+.+.
T Consensus 126 ~A~~~ 130 (181)
T PF09439_consen 126 TAKPP 130 (181)
T ss_dssp T---H
T ss_pred ccCCH
Confidence 76543
No 308
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.00 E-value=1.4e-05 Score=76.77 Aligned_cols=56 Identities=16% Similarity=-0.051 Sum_probs=42.8
Q ss_pred CCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 34 PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 34 PGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|.+..|...+...++.+|++++|+|+.+........++. ...++|+++++||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 445557888888899999999999998765444444433 23578999999999986
No 309
>KOG0092|consensus
Probab=98.00 E-value=1.6e-05 Score=74.01 Aligned_cols=80 Identities=21% Similarity=0.152 Sum_probs=56.8
Q ss_pred eeecceeEEEe--c--CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHhcCCC---eEEE
Q psy12559 13 TIQSAATYTLW--K--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKRYDVP---CIAF 84 (610)
Q Consensus 13 Ti~s~~~~~~~--~--~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~~~ip---~i~~ 84 (610)
||..+..+-.+ . ..++-++||.|...|.+-.-...|.+++||+|.|...--.-++.+ +++.+.+..=| +-++
T Consensus 37 TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialv 116 (200)
T KOG0092|consen 37 TIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALV 116 (200)
T ss_pred ccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 55555544433 2 367889999999999988888899999999999998755544444 44455443334 2368
Q ss_pred EecccCCC
Q psy12559 85 INKLDRLG 92 (610)
Q Consensus 85 iNKiDr~~ 92 (610)
-||+|+..
T Consensus 117 GNK~DL~~ 124 (200)
T KOG0092|consen 117 GNKADLLE 124 (200)
T ss_pred cchhhhhh
Confidence 99999874
No 310
>PRK10218 GTP-binding protein; Provisional
Probab=97.98 E-value=1.2e-05 Score=90.11 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=59.2
Q ss_pred cCcceeeeeeccc---ccchhhHH------HHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeE
Q psy12559 539 HDPVVSMSIKAVN---NKDRDNFS------KAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 609 (610)
Q Consensus 539 ~~~~~~~~v~a~~---~~~~~e~~------~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~ 609 (610)
..|+..+++.+.. ..+..++. .+|.++.++||++++..+.++++.+|+||||+||+|+.++|+++ |+++.
T Consensus 303 ~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre-g~e~~ 381 (607)
T PRK10218 303 DEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE-GFELA 381 (607)
T ss_pred CCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC-CceEE
Confidence 4588888887776 44666653 45555666999999999999999999999999999999999999 99986
Q ss_pred C
Q psy12559 610 L 610 (610)
Q Consensus 610 ~ 610 (610)
+
T Consensus 382 ~ 382 (607)
T PRK10218 382 V 382 (607)
T ss_pred E
Confidence 3
No 311
>KOG0098|consensus
Probab=97.95 E-value=2.5e-05 Score=72.17 Aligned_cols=70 Identities=21% Similarity=0.147 Sum_probs=53.4
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
.-+..+++++||.||..|.+-+....|.+-|||||.|...--.-.-. .++.-+++ .|+-++++-||+|+.
T Consensus 51 d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 51 DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 33456889999999999999999999999999999998753332222 23333443 567788999999986
No 312
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.93 E-value=8.6e-05 Score=61.19 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=57.4
Q ss_pred EEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC---eEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccC
Q psy12559 264 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD---KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASG 336 (610)
Q Consensus 264 ~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~---~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~G 336 (610)
.|..++.... |.++.+||.+|++++|+.+.+.+.+ ...+|.+|... ...+++|.+|+-|+| .++ +.+.|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~G 79 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKVG 79 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCCC
Confidence 3455554445 8899999999999999999999988 55578887733 667999999999986 455 77889
Q ss_pred ceE
Q psy12559 337 DTF 339 (610)
Q Consensus 337 dtl 339 (610)
|+|
T Consensus 80 dvi 82 (84)
T cd03692 80 DII 82 (84)
T ss_pred CEE
Confidence 887
No 313
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.91 E-value=0.00013 Score=72.00 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=55.7
Q ss_pred ecCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeEEEEecccCC
Q psy12559 23 WKDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 23 ~~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
+.++.++|+||||..| +.....--|...|.+++++|+.+---.-.+..|+.+.-. +.|.+++||..|+.
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 3567899999999887 444566777788999999999887666678888877643 46889999999987
No 314
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.88 E-value=6.8e-05 Score=75.71 Aligned_cols=73 Identities=26% Similarity=0.347 Sum_probs=53.7
Q ss_pred eEEEecCeeEEEecCCCCcCc--------HHHHHHHHhhc-CEEEEEEecCC--C--cchhhHHHHHHHH-hcCCCeEEE
Q psy12559 19 TYTLWKDHNINIIDTPGHVDF--------TVEVERALRVL-DGAILVLCAVG--G--VQSQTLTVNRQMK-RYDVPCIAF 84 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF--------~~ev~~al~~~-D~ailVvDa~~--G--v~~qt~~v~~~~~-~~~ip~i~~ 84 (610)
-+|+.+..++.+|||||.-|= -.+...||+-. +.+++++|.++ | ++.|- .+|+.++ .++.|+++|
T Consensus 208 Ghfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~~p~v~V 286 (346)
T COG1084 208 GHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQI-SLLEEIKELFKAPIVVV 286 (346)
T ss_pred eeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHH-HHHHHHHHhcCCCeEEE
Confidence 466777789999999998763 23577788754 66677999986 3 34454 3566665 567889999
Q ss_pred EecccCCC
Q psy12559 85 INKLDRLG 92 (610)
Q Consensus 85 iNKiDr~~ 92 (610)
+||+|...
T Consensus 287 ~nK~D~~~ 294 (346)
T COG1084 287 INKIDIAD 294 (346)
T ss_pred Eecccccc
Confidence 99999873
No 315
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.87 E-value=4.1e-05 Score=77.99 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=69.2
Q ss_pred HHhcceeecceeEEEecC--eeEEEecCCCCcCcHH---------------------HHHHHHh-------hcCEEEEEE
Q psy12559 8 RQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTV---------------------EVERALR-------VLDGAILVL 57 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~---------------------ev~~al~-------~~D~ailVv 57 (610)
+.+.+++......+.+++ ..+++|||||+.|+.. +..+..| .+|++++++
T Consensus 43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i 122 (276)
T cd01850 43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI 122 (276)
T ss_pred cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence 445555666666777776 4699999999877643 1122222 368999999
Q ss_pred ecC-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCC-CHHHHHHHHHHHhC
Q psy12559 58 CAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVG 107 (610)
Q Consensus 58 Da~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~-~~~~~~~~i~~~l~ 107 (610)
++. .|+......+++.+.. ++|+|+++||+|.... ........+++.+.
T Consensus 123 ~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~ 173 (276)
T cd01850 123 EPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIE 173 (276)
T ss_pred eCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence 987 4888888888888875 8999999999999742 22334455555554
No 316
>KOG0073|consensus
Probab=97.86 E-value=0.0003 Score=63.77 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=61.1
Q ss_pred eecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-hhHHHHHHH----HhcCCCeEEEEecc
Q psy12559 14 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-QTLTVNRQM----KRYDVPCIAFINKL 88 (610)
Q Consensus 14 i~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-qt~~v~~~~----~~~~ip~i~~iNKi 88 (610)
......++.++++++|++|--|...+..-.......+||.|.|||.++--.- ++...++.+ +..|.|++++.||.
T Consensus 48 ~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~ 127 (185)
T KOG0073|consen 48 LGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQ 127 (185)
T ss_pred cceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecC
Confidence 3344456778999999999999999999999999999999999999764322 233333322 34578999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|..+
T Consensus 128 dl~~ 131 (185)
T KOG0073|consen 128 DLPG 131 (185)
T ss_pred cCcc
Confidence 9874
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.84 E-value=6e-05 Score=74.77 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=56.5
Q ss_pred eeEEEecCCCCcCc---------H----HHHHHHHh-hcCEEEEEEecCCCcchhh-HHHHHHHHhcCCCeEEEEecccC
Q psy12559 26 HNINIIDTPGHVDF---------T----VEVERALR-VLDGAILVLCAVGGVQSQT-LTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 26 ~~inlIDTPGh~dF---------~----~ev~~al~-~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
..++||||||..+. . ..+..+++ ..+.+++|+||..++..+. ..+.+.+...+.|.|+|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 58999999998632 1 13566677 4569999999999999888 68889999999999999999999
Q ss_pred CCCC
Q psy12559 91 LGAD 94 (610)
Q Consensus 91 ~~~~ 94 (610)
....
T Consensus 205 ~~~~ 208 (240)
T smart00053 205 MDEG 208 (240)
T ss_pred CCcc
Confidence 8544
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.84 E-value=5.4e-05 Score=77.72 Aligned_cols=57 Identities=26% Similarity=0.368 Sum_probs=45.4
Q ss_pred CCCCcC-cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 33 TPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 33 TPGh~d-F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
=|||.. =..++..++..+|.+|.|+|+..+...+...+.+... +.|+++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 378743 3446888899999999999999888777766655543 79999999999974
No 319
>KOG1489|consensus
Probab=97.82 E-value=0.00017 Score=72.26 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=52.4
Q ss_pred eeecceeEEEecCee-EEEecCCCCc-----------CcHHHHHHHHhhcCEEEEEEecCCC----cchhhHHHHHHHHh
Q psy12559 13 TIQSAATYTLWKDHN-INIIDTPGHV-----------DFTVEVERALRVLDGAILVLCAVGG----VQSQTLTVNRQMKR 76 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~-inlIDTPGh~-----------dF~~ev~~al~~~D~ailVvDa~~G----v~~qt~~v~~~~~~ 76 (610)
|+....-+..+.++. +.+-|-||.. +|..-++| |+..++|||.+.+ .-.|-+.+|+.+..
T Consensus 230 TL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ 305 (366)
T KOG1489|consen 230 TLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER----CKGLLFVVDLSGKQLRNPWQQLQLLIEELEL 305 (366)
T ss_pred eeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh----hceEEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 455555566666665 9999999954 35555555 6999999999877 22333445555543
Q ss_pred c-----CCCeEEEEecccCC
Q psy12559 77 Y-----DVPCIAFINKLDRL 91 (610)
Q Consensus 77 ~-----~ip~i~~iNKiDr~ 91 (610)
+ +.|.++|+||||.+
T Consensus 306 yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 306 YEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HhhhhccCceEEEEeccCch
Confidence 3 46899999999985
No 320
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.78 E-value=0.00018 Score=69.83 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh----------------------cCCCe
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----------------------YDVPC 81 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~----------------------~~ip~ 81 (610)
.+.++|+||+|+..|..-....++.+|++|+|.|.+..-.-+...-| ..+.. .++|+
T Consensus 53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Pi 132 (202)
T cd04102 53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPL 132 (202)
T ss_pred EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceE
Confidence 46799999999999988888888999999999999887544443334 33332 36899
Q ss_pred EEEEecccCCC
Q psy12559 82 IAFINKLDRLG 92 (610)
Q Consensus 82 i~~iNKiDr~~ 92 (610)
|++-||+|+..
T Consensus 133 ilVGnK~Dl~~ 143 (202)
T cd04102 133 LVIGTKLDQIP 143 (202)
T ss_pred EEEEECccchh
Confidence 99999999863
No 321
>KOG0090|consensus
Probab=97.77 E-value=0.00057 Score=64.88 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=63.2
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHh---hcCEEEEEEecCCC---cchhhHHHHHH---H--HhcCCC
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR---VLDGAILVLCAVGG---VQSQTLTVNRQ---M--KRYDVP 80 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~---~~D~ailVvDa~~G---v~~qt~~v~~~---~--~~~~ip 80 (610)
.||..+...+..++....|||-|||.........-+. .+-+.|+|||+..- +..-.+.+... + .+.++|
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCC
Confidence 3566666777778888999999999988877766666 78899999998753 22222333322 2 356778
Q ss_pred eEEEEecccCCCCCHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVI 99 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~ 99 (610)
+++.-||-|..-|...+.+
T Consensus 148 vLIaCNKqDl~tAkt~~~I 166 (238)
T KOG0090|consen 148 VLIACNKQDLFTAKTAEKI 166 (238)
T ss_pred EEEEecchhhhhcCcHHHH
Confidence 8899999999877665544
No 322
>KOG0093|consensus
Probab=97.73 E-value=0.00028 Score=62.66 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=52.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHH---HhcCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~---~~~~ip~i~~iNKiDr~~ 92 (610)
+..++.++||.|...+..-+..-.|.++|.||+.|....-.-....-| -++ .-.+.|+|++-||+|...
T Consensus 68 kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 68 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred cEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 346789999999999988888999999999999998764322222212 222 346899999999999874
No 323
>KOG1532|consensus
Probab=97.72 E-value=0.0001 Score=72.19 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=44.4
Q ss_pred CeeEEEecCCCCcC-cH----H-HHHHHHhh--cCEEEEEEecCCCcchhhH--HHH---HHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVD-FT----V-EVERALRV--LDGAILVLCAVGGVQSQTL--TVN---RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~d-F~----~-ev~~al~~--~D~ailVvDa~~Gv~~qt~--~v~---~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.+.||||||... |. + -..-+|.. --.++.|||....-.+-|- ..+ ..+.+.++|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 36789999999765 21 1 12222222 2356678997665444442 122 33457899999999999987
Q ss_pred CCCH
Q psy12559 92 GADP 95 (610)
Q Consensus 92 ~~~~ 95 (610)
+..|
T Consensus 195 d~~f 198 (366)
T KOG1532|consen 195 DSEF 198 (366)
T ss_pred ccHH
Confidence 6553
No 324
>KOG0088|consensus
Probab=97.69 E-value=2.9e-05 Score=69.49 Aligned_cols=68 Identities=24% Similarity=0.187 Sum_probs=51.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH----HHHHhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~----~~~~~~~ip~i~~iNKiDr~ 91 (610)
....++++||.|...|-.-=--..|.+|||++|.|.++--.-|-..-| +++.-..+-.++|-||+|+.
T Consensus 60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 345789999999988865444445889999999999987766765555 34444557778999999986
No 325
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.69 E-value=0.00017 Score=65.74 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeEEEEecccCC
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
.++.+++..+|.+++|+|+..+...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999999988888888888776 89999999999985
No 326
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.67 E-value=0.00028 Score=73.13 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=29.7
Q ss_pred cCeeEEEecCCCCc----CcHH---HHHHHHhhcCEEEEEEecCC
Q psy12559 24 KDHNINIIDTPGHV----DFTV---EVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 24 ~~~~inlIDTPGh~----dF~~---ev~~al~~~D~ailVvDa~~ 61 (610)
+...+.|+||||.. .+.+ .....+|.+|++++|+|+..
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 34679999999973 3333 56667999999999999974
No 327
>PLN00023 GTP-binding protein; Provisional
Probab=97.65 E-value=0.00026 Score=72.75 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=52.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc---------------CCCeEEEEecc
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY---------------DVPCIAFINKL 88 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~---------------~ip~i~~iNKi 88 (610)
...++|+||+|+..|..-....++.+|++|+|+|.+.--.-.. ..+++.+.+. ++|+|+|.||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 3679999999999999888888999999999999886332222 2334444432 48999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|+..
T Consensus 162 DL~~ 165 (334)
T PLN00023 162 DIAP 165 (334)
T ss_pred cccc
Confidence 9864
No 328
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.64 E-value=0.00031 Score=69.93 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=36.1
Q ss_pred eEEEecCCCCcCcHHH------HHHHHh--hcCEEEEEEecCCCcchhhH-H----HHHHHHhcCCCeEEEEecccCCCC
Q psy12559 27 NINIIDTPGHVDFTVE------VERALR--VLDGAILVLCAVGGVQSQTL-T----VNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 27 ~inlIDTPGh~dF~~e------v~~al~--~~D~ailVvDa~~Gv~~qt~-~----v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
.+.|+||||...|..- ....|. ..=++|+++|+.-=-.+.+- . ......+.++|.|.++||+|....
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 7899999998776543 222232 22368889998743222221 1 112233579999999999999853
No 329
>KOG0076|consensus
Probab=97.64 E-value=0.00021 Score=65.43 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=64.2
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-----cchhhHHHHHHHHhcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-----VQSQTLTVNRQMKRYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-----v~~qt~~v~~~~~~~~ip~i~~iNK 87 (610)
|+....-+....+..++|||--|.....+-...-...+.+.|.||||... ...+-+.+.++=...|+|+++..||
T Consensus 56 tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 56 TVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 34444455566688999999999988887777788899999999999872 3344566777777889999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
-|+.++
T Consensus 136 qd~q~~ 141 (197)
T KOG0076|consen 136 QDLQNA 141 (197)
T ss_pred hhhhhh
Confidence 998753
No 330
>KOG0080|consensus
Probab=97.60 E-value=9.7e-05 Score=66.47 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=59.4
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHH----HhcCCCeEEEE
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM----KRYDVPCIAFI 85 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~----~~~~ip~i~~i 85 (610)
|+..+...+++.-+..++.++||.|...|..-+-.-.|.+-|+|+|.|.+.--+---..+| +.+ ...++-.++|-
T Consensus 45 GvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVg 124 (209)
T KOG0080|consen 45 GVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVG 124 (209)
T ss_pred eeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhc
Confidence 3344455555555678899999999999999999999999999999998764332223344 222 23456678999
Q ss_pred ecccCC
Q psy12559 86 NKLDRL 91 (610)
Q Consensus 86 NKiDr~ 91 (610)
||+|+.
T Consensus 125 NKiDke 130 (209)
T KOG0080|consen 125 NKIDKE 130 (209)
T ss_pred ccccch
Confidence 999976
No 331
>KOG1191|consensus
Probab=97.60 E-value=0.00022 Score=75.50 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=65.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCc---------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDF---------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF---------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
-|.|.++--+.|+.+|+.+.|+||.|...= ......++..+|.+++||||.++...+...+.+.+...+.-
T Consensus 300 ~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g 379 (531)
T KOG1191|consen 300 PGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVG 379 (531)
T ss_pred CCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccc
Confidence 488889999999999999999999997651 11255677889999999999999999888888888887776
Q ss_pred eEEEEecc
Q psy12559 81 CIAFINKL 88 (610)
Q Consensus 81 ~i~~iNKi 88 (610)
+.+.+|||
T Consensus 380 ~~~~~~~~ 387 (531)
T KOG1191|consen 380 LVVIVNKM 387 (531)
T ss_pred eEEEeccc
Confidence 66666666
No 332
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.60 E-value=0.00031 Score=66.68 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=57.8
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
++.+.+.+|||||... ..+..++..+|.+++++.....-...+..+++.+++.++|..+++||+|....
T Consensus 90 ~~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 90 AEGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE 158 (179)
T ss_pred hcCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc
Confidence 3678999999997643 46778899999999999988766667788899999999999999999997543
No 333
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.57 E-value=0.00031 Score=70.80 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=52.5
Q ss_pred ceeEEEecCeeEEEecCCCCcCc-------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC-----CeEEE
Q psy12559 17 AATYTLWKDHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-----PCIAF 84 (610)
Q Consensus 17 ~~~~~~~~~~~inlIDTPGh~dF-------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i-----p~i~~ 84 (610)
-.--+.|++.+|.|+|+||...= ..++.+..|.||.+++|+|+.+.... -+.+.+.+...|| |.=+.
T Consensus 101 VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~ 179 (365)
T COG1163 101 VPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVT 179 (365)
T ss_pred ccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceE
Confidence 33446789999999999996532 34789999999999999999986543 4456666666553 45556
Q ss_pred EecccC
Q psy12559 85 INKLDR 90 (610)
Q Consensus 85 iNKiDr 90 (610)
|.|-++
T Consensus 180 I~kk~~ 185 (365)
T COG1163 180 IKKKES 185 (365)
T ss_pred EEEecc
Confidence 666444
No 334
>KOG0087|consensus
Probab=97.57 E-value=0.0003 Score=66.57 Aligned_cols=76 Identities=17% Similarity=0.076 Sum_probs=58.8
Q ss_pred ceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh---cCCCeEEEEecccCCC
Q psy12559 17 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 17 ~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
..+.+.-+-.+..++||.|...|..-+.+-.|.+-||++|.|.+.-.+-+ ..+++++++. .+++++++-||.|+..
T Consensus 54 ~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 54 RTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred eceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 33333334567799999999999988888889999999999998765443 3556677765 4789999999999763
No 335
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.55 E-value=6.1e-05 Score=66.09 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=55.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-hhHHH---HHHHHh--cCCCeEE
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-QTLTV---NRQMKR--YDVPCIA 83 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-qt~~v---~~~~~~--~~ip~i~ 83 (610)
.+.++.............+.|+|++|...|.......+..+|++|+|+|..+.-.- +...+ +....+ .++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piil 113 (119)
T PF08477_consen 34 SEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIIL 113 (119)
T ss_dssp TTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEE
T ss_pred CCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEE
Confidence 34445444444444556799999999988887766679999999999999875422 22223 233332 4599999
Q ss_pred EEeccc
Q psy12559 84 FINKLD 89 (610)
Q Consensus 84 ~iNKiD 89 (610)
+.||.|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 999998
No 336
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.53 E-value=0.00095 Score=70.03 Aligned_cols=88 Identities=10% Similarity=0.147 Sum_probs=67.8
Q ss_pred eeEEEecCCCCcCcHH-------H----------------------HHHHHh-hcCEEEEEE-ecC------CCcchhhH
Q psy12559 26 HNINIIDTPGHVDFTV-------E----------------------VERALR-VLDGAILVL-CAV------GGVQSQTL 68 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~-------e----------------------v~~al~-~~D~ailVv-Da~------~Gv~~qt~ 68 (610)
..+-||||+|+.|=.. . +...++ -+|.+|+|. |++ ++...-.+
T Consensus 91 ~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe 170 (492)
T TIGR02836 91 FKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEE 170 (492)
T ss_pred ccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHH
Confidence 5789999999865211 1 566777 899999999 986 56667788
Q ss_pred HHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEe
Q psy12559 69 TVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFL 113 (610)
Q Consensus 69 ~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~ 113 (610)
++++.+++.++|.|+++||.|-......+..+++.++++..++++
T Consensus 171 ~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 171 RVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEE
Confidence 899999999999999999999554445556677788887654443
No 337
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.52 E-value=0.00049 Score=71.14 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=42.5
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
.++.+.||||||.-.- ....+..+|.++++.+...|-+-+.. ... -.++|.++++||+|+...
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~~--~~~--l~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQGI--KAG--LMEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHHH--HHH--HhhhccEEEEEcccccch
Confidence 4789999999996522 22357788999888765544322221 111 247889999999998754
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00051 Score=72.21 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=36.6
Q ss_pred HHHhhcCEEEEEEecCCCc-ch-hhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 45 RALRVLDGAILVLCAVGGV-QS-QTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 45 ~al~~~D~ailVvDa~~Gv-~~-qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+++.+|.+++|+|+.+.- .. +..+.+..+...++|+|+++||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3588899999999998542 33 33555666677899999999999985
No 339
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.38 E-value=0.00054 Score=70.29 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=35.7
Q ss_pred HhhcCEEEEEEecCCCc-ch-hhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 47 LRVLDGAILVLCAVGGV-QS-QTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 47 l~~~D~ailVvDa~~Gv-~~-qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
++.+|.+++|+|+.+.. .. .-.+++..+...++|+++++||+|+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~ 122 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLL 122 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCC
Confidence 67789999999998876 32 22445566677899999999999975
No 340
>PRK00098 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00065 Score=70.13 Aligned_cols=46 Identities=22% Similarity=0.119 Sum_probs=34.6
Q ss_pred HHhhcCEEEEEEecCCCcc--hhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 46 ALRVLDGAILVLCAVGGVQ--SQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 46 al~~~D~ailVvDa~~Gv~--~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.++.+|.+++|+|+.+... ..-.+++..+...++|+++++||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 3578999999999975422 122345556777899999999999975
No 341
>KOG0071|consensus
Probab=97.33 E-value=0.0024 Score=56.46 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=60.2
Q ss_pred ecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC--cchhhHHHHHHH---HhcCCCeEEEEeccc
Q psy12559 15 QSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG--VQSQTLTVNRQM---KRYDVPCIAFINKLD 89 (610)
Q Consensus 15 ~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G--v~~qt~~v~~~~---~~~~ip~i~~iNKiD 89 (610)
..+.-++.+++.++|.+|..|......-..+....+-+.|+|+|+... ++.--.++-+.+ .-...|.+++.||-|
T Consensus 50 GFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQD 129 (180)
T KOG0071|consen 50 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQD 129 (180)
T ss_pred ceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcc
Confidence 344556678999999999999999999999999999999999998764 222222333333 234688899999999
Q ss_pred CCCC
Q psy12559 90 RLGA 93 (610)
Q Consensus 90 r~~~ 93 (610)
++.+
T Consensus 130 lp~A 133 (180)
T KOG0071|consen 130 LPDA 133 (180)
T ss_pred cccc
Confidence 9865
No 342
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.32 E-value=0.0015 Score=55.77 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCCCeEEEEEEEEeeC--------C-ccEEEEEEEeceecCCCEEEecCC-------Ce-----EEEeceEEEeccCccc
Q psy12559 257 GKHPFIALAFKLEAGK--------F-GQLTYMRCYQGKLRKGEMIYNVRT-------DK-----KVRVSRLVRLHSNEME 315 (610)
Q Consensus 257 ~~~p~~~~V~k~~~~~--------~-G~i~~~RV~sG~l~~g~~v~~~~~-------~~-----~~~v~~i~~~~g~~~~ 315 (610)
.+.|+.++|.+.|... . |.++-++|.+|+|+.||+|.+.+- +. ..+|.+|+ ....
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AENN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecCc
Confidence 4678888888888654 3 679999999999999999987632 11 22445554 3355
Q ss_pred ccCcccCCCEEEE-cCC
Q psy12559 316 DVEEVLAGDIFAL-FGV 331 (610)
Q Consensus 316 ~v~~a~aGdiv~i-~gl 331 (610)
.+++|.||+.++| ++|
T Consensus 78 ~l~~a~pGgliGvgT~L 94 (113)
T cd03688 78 DLQEAVPGGLIGVGTKL 94 (113)
T ss_pred cccEEeCCCeEEEcccc
Confidence 7999999999998 444
No 343
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.29 E-value=0.00061 Score=68.20 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCEEEEEEecCCCc-ch-hhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 39 FTVEVERALRVLDGAILVLCAVGGV-QS-QTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 39 F~~ev~~al~~~D~ailVvDa~~Gv-~~-qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|..-+...++.+|++++|+|+.+.- .. .-.+++..+...++|+++++||+|+.
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 3333334678899999999998643 22 33445566667899999999999985
No 344
>KOG0086|consensus
Probab=97.26 E-value=0.0018 Score=57.86 Aligned_cols=81 Identities=23% Similarity=0.143 Sum_probs=59.0
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH----HHHHhcCCCeEEEEec
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKRYDVPCIAFINK 87 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~----~~~~~~~ip~i~~iNK 87 (610)
+-..|..+++--+..++.++||.|...|.+-+....|.+-||++|.|+..--.-...+-| |.+...+|-+|++-||
T Consensus 44 veFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnK 123 (214)
T KOG0086|consen 44 VEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNK 123 (214)
T ss_pred eeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCCh
Confidence 333444444444567889999999999999999999999999999999865444444444 3333456667788899
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
-|+..
T Consensus 124 kDL~~ 128 (214)
T KOG0086|consen 124 KDLDP 128 (214)
T ss_pred hhcCh
Confidence 99764
No 345
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.25 E-value=0.00091 Score=65.99 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=60.2
Q ss_pred cceeecceeEEEe-cCeeEEEecCCCCcCcHHH-----HHHHHhhcCEEEEEEecC-CCcch---hhHHHHHHHHhc--C
Q psy12559 11 GITIQSAATYTLW-KDHNINIIDTPGHVDFTVE-----VERALRVLDGAILVLCAV-GGVQS---QTLTVNRQMKRY--D 78 (610)
Q Consensus 11 giTi~s~~~~~~~-~~~~inlIDTPGh~dF~~e-----v~~al~~~D~ailVvDa~-~Gv~~---qt~~v~~~~~~~--~ 78 (610)
|-|++.....+.. ....+|++|+||+.+|... ...-++.+++.|.|+|+. +.... .-...++.+.+. +
T Consensus 32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~ 111 (232)
T PF04670_consen 32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPN 111 (232)
T ss_dssp ----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCC
Confidence 5677666666654 4569999999999988775 466789999999999998 33221 123344555543 5
Q ss_pred CCeEEEEecccCCCCCHH-HHHHHHHHHh
Q psy12559 79 VPCIAFINKLDRLGADPY-RVINQMRQKV 106 (610)
Q Consensus 79 ip~i~~iNKiDr~~~~~~-~~~~~i~~~l 106 (610)
+.+.+||.|||....+.. +++..+++.+
T Consensus 112 ~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 112 IKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp -EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred CeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 677899999999865433 3445555544
No 346
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.24 E-value=0.0045 Score=65.08 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=67.7
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-----------cchhhHHHHHHHHh
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-----------VQSQTLTVNRQMKR 76 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-----------v~~qt~~v~~~~~~ 76 (610)
+.|--|.......|.+++..+.++|..|...+..-....+..+|++|+|||.++- -...+..+|+.+..
T Consensus 166 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 166 RSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred heeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 3455666667778899999999999999999988999999999999999999863 12345556665543
Q ss_pred ----cCCCeEEEEecccCC
Q psy12559 77 ----YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ----~~ip~i~~iNKiDr~ 91 (610)
.++|+++|.||.|..
T Consensus 246 ~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 246 SRWFANTSIILFLNKIDLF 264 (342)
T ss_pred CccccCCcEEEEEecHHhH
Confidence 578999999999976
No 347
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.23 E-value=0.0022 Score=60.52 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=65.4
Q ss_pred eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCCCCHHHHHHHHHHH
Q psy12559 27 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQMRQK 105 (610)
Q Consensus 27 ~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~~~~~~~~i~~~ 105 (610)
.+.+|||||..+. ....++..+|.+|++++....-...+...++.+.+.+.+. .+++|++|.......+.++.+++.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 6999999987654 5778899999999999998877777778888887777765 589999998755555667778887
Q ss_pred hCCCee
Q psy12559 106 VGHNAA 111 (610)
Q Consensus 106 l~~~~~ 111 (610)
++....
T Consensus 142 ~~~~v~ 147 (179)
T cd02036 142 LGVPLL 147 (179)
T ss_pred hCCCEE
Confidence 775543
No 348
>KOG0083|consensus
Probab=97.23 E-value=0.00082 Score=58.55 Aligned_cols=76 Identities=17% Similarity=0.088 Sum_probs=55.6
Q ss_pred cceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 16 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 16 s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...+.+.-+..++.++||.|...|.+-+.+..|.+|+.+++.|...--.-.. +.++.++.+ +.+...++-||+|..
T Consensus 37 nkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 37 NKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred cceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 3333444445788999999999999999999999999999999875443322 333344433 456778999999975
No 349
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.23 E-value=0.0022 Score=64.25 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=55.7
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccC
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
+.|.........|++..+++|||||..|...+-... ..-...+.+.+.+.+++.++++||+|.
T Consensus 64 ~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~-----------------~~~~~~I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 64 SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVN-----------------RKILSSIKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHH-----------------HHHHHHHHHHHhccCCCEEEEEEcCCC
Confidence 345555556667889999999999998863211100 001233455566677888999999998
Q ss_pred CCCCHH--HHHHHHHHHhCCC
Q psy12559 91 LGADPY--RVINQMRQKVGHN 109 (610)
Q Consensus 91 ~~~~~~--~~~~~i~~~l~~~ 109 (610)
...+.. .+++.|++.||..
T Consensus 127 ~r~~~~d~~llk~I~e~fG~~ 147 (249)
T cd01853 127 YRRDYLDLPLLRAITDSFGPS 147 (249)
T ss_pred CCCCHHHHHHHHHHHHHhChh
Confidence 766655 6888898888843
No 350
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.18 E-value=0.0033 Score=52.88 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=59.9
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC-Cc-ccCce
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV-DC-ASGDT 338 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~-~~Gdt 338 (610)
.++|.....+++ |.++.+-|.+|||+.||.+..... ..||+.|+...| .++++|.||+.+-|.|+ ++ ..||.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT--YGKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc--ccEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCCCCE
Confidence 366777777877 999999999999999999988643 347777775555 56899999999999999 55 67887
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 76
No 351
>PRK01889 GTPase RsgA; Reviewed
Probab=97.12 E-value=0.0025 Score=67.39 Aligned_cols=45 Identities=9% Similarity=-0.050 Sum_probs=38.8
Q ss_pred hhcCEEEEEEecCCCcch-hhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 48 RVLDGAILVLCAVGGVQS-QTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 48 ~~~D~ailVvDa~~Gv~~-qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+|.+++|+++...... ...+.+..+...++|+++++||+|+..
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 568999999999877776 567788889999999999999999863
No 352
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.11 E-value=0.0043 Score=66.46 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=29.4
Q ss_pred eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC
Q psy12559 26 HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 26 ~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~ 61 (610)
..++|+||||..+ ......+.++.+|++++|||+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5689999999643 34467778999999999999974
No 353
>KOG0095|consensus
Probab=97.03 E-value=0.0035 Score=55.81 Aligned_cols=67 Identities=22% Similarity=0.163 Sum_probs=51.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
..++.++||.|...|.+-+.+..|.+.+.|+|.|.+.-..-.- -.+++.+.+ .++-.|+|-||+|+.
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 4577899999999999999999999999999999876443322 233444443 345568999999986
No 354
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.03 E-value=0.0031 Score=66.89 Aligned_cols=54 Identities=19% Similarity=0.023 Sum_probs=38.5
Q ss_pred cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 37 VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 37 ~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
.+|...+....+.+|.+++|+|+.+-...--..+.+.+ .+.|+++++||+|...
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 35666555555788999999999875544444444433 2789999999999863
No 355
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.99 E-value=0.0014 Score=68.24 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=65.8
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-----------chhhHHHHHHHHh-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-----------QSQTLTVNRQMKR- 76 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-----------~~qt~~v~~~~~~- 76 (610)
.|.-|.......|.+++..+.++|++|...+..........++++|+|||.++-- ...+..+|+.+..
T Consensus 144 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 144 ARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred eecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 3555666667788999999999999999998888999999999999999998632 2234445554443
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.++|+++|.||.|..
T Consensus 224 ~~~~~~pill~~NK~D~f 241 (317)
T cd00066 224 RWFANTSIILFLNKKDLF 241 (317)
T ss_pred ccccCCCEEEEccChHHH
Confidence 478999999999976
No 356
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.98 E-value=0.0029 Score=61.65 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=38.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
+..+.||+|.|..-.... .....+..+.|+|+..+...+ .+.....+.|.++++||+|+..
T Consensus 102 ~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred CCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccc
Confidence 457889999993211110 012346667899998765432 2233445678899999999864
No 357
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0031 Score=54.76 Aligned_cols=59 Identities=24% Similarity=0.139 Sum_probs=42.5
Q ss_pred EecCCC----CcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 30 IIDTPG----HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 30 lIDTPG----h~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.||||| |.-...-....+..+|..++|-.+.++.+.-.- ..+.-...|.|-+|+|.|+.
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLA 103 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc---ccccccccceEEEEeccccc
Confidence 699999 555555566677788999999999886433222 22334567799999999987
No 358
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.95 E-value=0.0073 Score=61.65 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=45.6
Q ss_pred cCeeEEEecCCCCc-----------CcHHHHHHHHhhcCEEEEEEecCCCc----chhhHHHHHHHHhc-----CCCeEE
Q psy12559 24 KDHNINIIDTPGHV-----------DFTVEVERALRVLDGAILVLCAVGGV----QSQTLTVNRQMKRY-----DVPCIA 83 (610)
Q Consensus 24 ~~~~inlIDTPGh~-----------dF~~ev~~al~~~D~ailVvDa~~Gv----~~qt~~v~~~~~~~-----~ip~i~ 83 (610)
.+..|.+-|-||.. +|..-++| +-..+.|||.+.-- ..+-+.++..+.++ +.|.++
T Consensus 205 ~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv 280 (369)
T COG0536 205 GGESFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV 280 (369)
T ss_pred CCCcEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE
Confidence 45679999999954 56666666 56778899987432 33334555555544 689999
Q ss_pred EEecccCC
Q psy12559 84 FINKLDRL 91 (610)
Q Consensus 84 ~iNKiDr~ 91 (610)
+.||||..
T Consensus 281 v~NKiD~~ 288 (369)
T COG0536 281 VLNKIDLP 288 (369)
T ss_pred EEeccCCC
Confidence 99999965
No 359
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.94 E-value=0.0034 Score=60.79 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred CeeEEEecCCCC--cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe--EEEEecccCCC
Q psy12559 25 DHNINIIDTPGH--VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC--IAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh--~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~--i~~iNKiDr~~ 92 (610)
+....+|.|-|- .... . -..+|++|+|+|+.+|-..+.. . ..++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~l~~~~---~--~~l~~~~i~vvD~~~~~~~~~~----~--~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF---S--PELADLTIFVIDVAAGDKIPRK----G--GPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCCccccc---c--hhhhCcEEEEEEcchhhhhhhh----h--HhHhhhccEEEEEhhhccc
Confidence 346788999992 2111 1 1236999999999988764321 0 123444 89999999873
No 360
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.89 E-value=0.0013 Score=61.58 Aligned_cols=64 Identities=25% Similarity=0.261 Sum_probs=46.6
Q ss_pred CeeEEEecCCCCcCcHH----HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHH-HhcCCCeEEEEecc
Q psy12559 25 DHNINIIDTPGHVDFTV----EVERALRVLDGAILVLCAVGGVQSQTLTVNRQM-KRYDVPCIAFINKL 88 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~----ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~-~~~~ip~i~~iNKi 88 (610)
...+.||||||..+... -+...+..+|.+|+|+++......+....|.+. ...+-..|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 46799999999865333 377777999999999999997776655555544 44555567888885
No 361
>KOG0395|consensus
Probab=96.85 E-value=0.012 Score=56.75 Aligned_cols=68 Identities=28% Similarity=0.311 Sum_probs=53.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHH----HhcCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQM----KRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~----~~~~ip~i~~iNKiDr~~ 92 (610)
...+.++||+|..+|...-...++..||-++|.+..+--.-+. ..++.++ ....+|++++.||.|+..
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 4567799999999999999999999999999999886443322 3334444 335689999999999873
No 362
>KOG0394|consensus
Probab=96.83 E-value=0.0051 Score=57.12 Aligned_cols=68 Identities=24% Similarity=0.170 Sum_probs=52.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-----HHHHh---cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-----RQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-----~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
-....++||.|...|-+--.+-.|.+|.+++|.|...--.-.+..-| .++.. ..-|.|++-||+|..+
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 35678999999999988888888999999999998754444444445 44432 4579999999999864
No 363
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.80 E-value=0.015 Score=47.00 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=46.0
Q ss_pred eEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccC
Q psy12559 261 FIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASG 336 (610)
Q Consensus 261 ~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~G 336 (610)
....|.+.+.-.. . +..|+|..|+|++|..| .|.. ++.+..+. .+.+++++|.+||-||+ .|. +.+.|
T Consensus 5 ~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~~--iG~I~sIe-~~~k~v~~A~~G~eVai~Ieg~~~i~eG 76 (81)
T PF14578_consen 5 GKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGRK--IGRIKSIE-DNGKNVDEAKKGDEVAISIEGPTQIKEG 76 (81)
T ss_dssp EEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSSC--EEEEEEEE-ETTEEESEEETT-EEEEEEET--TB-TT
T ss_pred eEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCEE--EEEEEEeE-ECCcCccccCCCCEEEEEEeCCccCCCC
Confidence 3344444444444 6 77779999999999999 3332 44444343 55789999999999986 454 77888
Q ss_pred ceEe
Q psy12559 337 DTFV 340 (610)
Q Consensus 337 dtl~ 340 (610)
|+|.
T Consensus 77 DiLy 80 (81)
T PF14578_consen 77 DILY 80 (81)
T ss_dssp -EEE
T ss_pred CEEe
Confidence 8874
No 364
>PRK13796 GTPase YqeH; Provisional
Probab=96.74 E-value=0.0087 Score=63.57 Aligned_cols=48 Identities=19% Similarity=0.048 Sum_probs=34.1
Q ss_pred HHHHHHhhcC-EEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 42 EVERALRVLD-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 42 ev~~al~~~D-~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+...+...| .+++|||+.+-....-..+-+.. .+.|+++++||+|+.
T Consensus 61 ~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl 109 (365)
T PRK13796 61 KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLL 109 (365)
T ss_pred HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhC
Confidence 4677777667 88899999885544333333322 378999999999986
No 365
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.73 E-value=0.0036 Score=61.20 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=56.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC--CcchhhHHHHHHHHhc---CCCeEEEEecccCCCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG--GVQSQTLTVNRQMKRY---DVPCIAFINKLDRLGAD 94 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~--Gv~~qt~~v~~~~~~~---~ip~i~~iNKiDr~~~~ 94 (610)
..++.++||+|+.+|..-+....+.++++++++|... ....-++.+...+... +.|++++.||+|+....
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 4568999999999999888888899999999999884 4444555566565553 48999999999998543
No 366
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.61 E-value=0.015 Score=48.98 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=58.3
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEEcCC--CcccCce
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFALFGV--DCASGDT 338 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~gl--~~~~Gdt 338 (610)
.++|.....+++ |.++.+-|.+|+|+.||.+.... ...+|..++... ...+.+|.||+.+-+.|+ ....||.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~GkVr~~~d~~---g~~v~~a~Ps~~v~i~g~~~~p~aGd~ 76 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG--TYGKIRTMVDEN---GKALLEAGPSTPVEILGLKDVPKAGDG 76 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC--ccceEEEEECCC---CCCccccCCCCCEEEeeecCCccCCCE
Confidence 366777777877 99999999999999999998864 244666666444 446899999999999998 3467887
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
+.
T Consensus 77 ~~ 78 (95)
T cd03701 77 VL 78 (95)
T ss_pred EE
Confidence 75
No 367
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=96.57 E-value=0.018 Score=49.45 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=59.3
Q ss_pred EEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCe--EEEeceEEEeccC-------cccccCccc--CCCEEEEcC
Q psy12559 263 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK--KVRVSRLVRLHSN-------EMEDVEEVL--AGDIFALFG 330 (610)
Q Consensus 263 ~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~g~-------~~~~v~~a~--aGdiv~i~g 330 (610)
+.|.....+++ |..+-+-|++|+|+.||.|......- ..||+.|+...+. ++..++++. +|--+...|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 55677777777 99999999999999999999876532 2478888877763 345677777 677777778
Q ss_pred C-CcccCceEe
Q psy12559 331 V-DCASGDTFV 340 (610)
Q Consensus 331 l-~~~~Gdtl~ 340 (610)
| ++..|+.|.
T Consensus 83 L~~v~aG~~~~ 93 (110)
T cd03703 83 LEKAIAGSPLL 93 (110)
T ss_pred CccccCCCEEE
Confidence 8 677787765
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=96.57 E-value=0.013 Score=61.66 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=32.6
Q ss_pred hhcCEEEEEEecCCCcchhh-HHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 48 RVLDGAILVLCAVGGVQSQT-LTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 48 ~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+|.+++|.+........- .+++..+...++|+++++||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 44899998888765443322 3344567778999999999999863
No 369
>KOG0079|consensus
Probab=96.54 E-value=0.008 Score=53.63 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=54.8
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
..++.++||.|...|..-+..-.|...++++|.|.+.|-.-.. .++++.++.. .+|.++|-||.|.++
T Consensus 56 ~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 56 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred EEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 3578999999999999888888999999999999998865443 4555555432 578899999999764
No 370
>KOG0074|consensus
Probab=96.36 E-value=0.011 Score=52.44 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=56.0
Q ss_pred ceeEEEecC-eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc--chhhHH---HHHHHHhcCCCeEEEEecccC
Q psy12559 17 AATYTLWKD-HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV--QSQTLT---VNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 17 ~~~~~~~~~-~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv--~~qt~~---v~~~~~~~~ip~i~~iNKiDr 90 (610)
+..++.+.+ .++|++|-.|......-........|+.|+|||..+-- +.-.+. +++..+-..+|+.+|-||-|+
T Consensus 52 n~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl 131 (185)
T KOG0074|consen 52 NTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL 131 (185)
T ss_pred ceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence 344556655 89999999999888888888888999999999976522 111222 333344567899999999998
Q ss_pred CC
Q psy12559 91 LG 92 (610)
Q Consensus 91 ~~ 92 (610)
+-
T Consensus 132 lt 133 (185)
T KOG0074|consen 132 LT 133 (185)
T ss_pred Hh
Confidence 73
No 371
>KOG0081|consensus
Probab=96.35 E-value=0.023 Score=51.32 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=50.9
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-chhhHHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
..+.|+||.|...|.+-+.+-.|.+=|-+++.|-+.-- --.++.++.|++. ++--++++-||.|+++
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 35688999999999999999999999999999976522 2234555555543 3444678999999874
No 372
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.26 E-value=0.014 Score=54.95 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=44.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH----h--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL----R--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al----~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
+++.+.+|||||...+..+....+ . ..|++++|+|+..+-... +..++.....++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 467799999999875443333332 2 389999999997554332 444555445553 458889999863
No 373
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.19 E-value=0.011 Score=55.68 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=35.6
Q ss_pred CEEEEEEecCCCcchhhHHHHHH--HHhcCCCeEEEEecccCC
Q psy12559 51 DGAILVLCAVGGVQSQTLTVNRQ--MKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~~~--~~~~~ip~i~~iNKiDr~ 91 (610)
|.+++|+||......+...+.+. +...+.|.|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999888888888877 445679999999999995
No 374
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.16 E-value=0.021 Score=56.63 Aligned_cols=61 Identities=31% Similarity=0.364 Sum_probs=41.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH--HHHHHHhcCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT--VNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~--v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
.++.+.||-|-|--- +|+. -...+|..++|+-...|-+.|..+ +++. +=|+||||.|+.++
T Consensus 120 aG~D~IiiETVGvGQ--sE~~-I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD~~gA 182 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQ--SEVD-IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKADRPGA 182 (266)
T ss_dssp TT-SEEEEEEESSST--HHHH-HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--SHHHH
T ss_pred cCCCEEEEeCCCCCc--cHHH-HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCChHHH
Confidence 368899999998533 2222 257899999999998888888754 3443 45899999997644
No 375
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.01 E-value=0.02 Score=55.56 Aligned_cols=68 Identities=24% Similarity=0.182 Sum_probs=53.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~ 92 (610)
+.+.+.|||||... -..+....++.+|++|+|+++...-..+.....+++.+.+.+++ +++||.|...
T Consensus 126 ~~yD~ViiD~pp~~-~~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIG-TVTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcc-ccchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 35789999999732 22334445567999999999987777788888889998999986 8999999763
No 376
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.95 E-value=0.068 Score=54.86 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=50.6
Q ss_pred eeEEEecCeeEEEecCCCCcCcHH---HHHHHHh------hcCEEEEEEecCC-CcchhhHHHHHHHHhc-----CCCeE
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFTV---EVERALR------VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-----DVPCI 82 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~~---ev~~al~------~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~-----~ip~i 82 (610)
..+..++++++++|||||..|... +....++ ..|++++|..... ......+.+++.+... -.+.|
T Consensus 78 ~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~I 157 (313)
T TIGR00991 78 MVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSL 157 (313)
T ss_pred EEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEE
Confidence 345567899999999999887532 2333333 3789999844321 2444445555544431 25689
Q ss_pred EEEecccCC---CCCHHHH
Q psy12559 83 AFINKLDRL---GADPYRV 98 (610)
Q Consensus 83 ~~iNKiDr~---~~~~~~~ 98 (610)
+++++.|.. +.++++-
T Consensus 158 VVfTh~d~~~pd~~~~e~f 176 (313)
T TIGR00991 158 VVLTHAQFSPPDGLEYNDF 176 (313)
T ss_pred EEEECCccCCCCCCCHHHH
Confidence 999999976 3345443
No 377
>KOG0097|consensus
Probab=95.92 E-value=0.026 Score=49.79 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=51.9
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHhcCCC---eEEEEecccCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKRYDVP---CIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~~~ip---~i~~iNKiDr~ 91 (610)
+.+.-...++.++||.|...|..-+.+-.|.+-||++|.|...--+-.-..-| .-++..--| ++++-||.|+.
T Consensus 53 ievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 53 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 33344456789999999999999999999999999999998754333222223 334433333 56778999976
No 378
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.91 E-value=0.022 Score=42.67 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=28.0
Q ss_pred HHHHHHh-hcCEEEEEEecCCCcc--hhh-HHHHHHHHh-c-CCCeEEEEeccc
Q psy12559 42 EVERALR-VLDGAILVLCAVGGVQ--SQT-LTVNRQMKR-Y-DVPCIAFINKLD 89 (610)
Q Consensus 42 ev~~al~-~~D~ailVvDa~~Gv~--~qt-~~v~~~~~~-~-~ip~i~~iNKiD 89 (610)
+...||+ ..+.+++++|.++... ... ..+++.++. + +.|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4566776 4578889999987432 222 234555554 4 899999999998
No 379
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.89 E-value=0.12 Score=51.49 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=57.5
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~~~~~i 102 (610)
+++.+.+||||+-.+ ..+..++..+|.+|+|++....-...+....+.+...+++.+ +++|+.|..... ...+.+
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~~~~--~~~~~l 182 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRDKTE--LGREEI 182 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCchhhh--hHHHHH
Confidence 358999999998765 457788899999999999875444455666666777788864 999999864221 223455
Q ss_pred HHHhCC
Q psy12559 103 RQKVGH 108 (610)
Q Consensus 103 ~~~l~~ 108 (610)
.+.++.
T Consensus 183 ~~~~~~ 188 (251)
T TIGR01969 183 ETILEV 188 (251)
T ss_pred HHhhCC
Confidence 555554
No 380
>KOG0077|consensus
Probab=95.88 E-value=0.018 Score=52.61 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=60.7
Q ss_pred cceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-H----HHHHHHHhcCCCeEEEEecccC
Q psy12559 16 SAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-L----TVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 16 s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~----~v~~~~~~~~ip~i~~iNKiDr 90 (610)
.+.-.+...+.+++-+|--||.-=..-....+..+|+.|.+|||.+--.-|. + .++....-.++|.++..||+|+
T Consensus 54 PTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~ 133 (193)
T KOG0077|consen 54 PTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDI 133 (193)
T ss_pred CChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccC
Confidence 3344456678999999999997655556666778999999999976322221 1 2222222358999999999999
Q ss_pred CCCCHHHHHHHHHHHhC
Q psy12559 91 LGADPYRVINQMRQKVG 107 (610)
Q Consensus 91 ~~~~~~~~~~~i~~~l~ 107 (610)
+++- ..++++-.++
T Consensus 134 p~a~---se~~l~~~l~ 147 (193)
T KOG0077|consen 134 PYAA---SEDELRFHLG 147 (193)
T ss_pred CCcc---cHHHHHHHHH
Confidence 9875 3445555444
No 381
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.76 E-value=0.04 Score=51.68 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=60.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH--hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCC------
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGAD------ 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~------ 94 (610)
+++.+.++|||+..+ .+....+ ..+|.+++|+....--..++...++.+.+.+++.+ +++|+.+....+
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~ 143 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIY 143 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCCccc
Confidence 578899999999753 3444444 68899999998887667788889999999999986 889999863111
Q ss_pred --HHHHHHHHHHHhCC
Q psy12559 95 --PYRVINQMRQKVGH 108 (610)
Q Consensus 95 --~~~~~~~i~~~l~~ 108 (610)
....++++.+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 144 IFGKGGGEKLAEELGV 159 (169)
T ss_pred ccCCccHHHHHHHcCC
Confidence 12345666666553
No 382
>KOG4252|consensus
Probab=95.76 E-value=0.012 Score=54.22 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=51.7
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHH--HHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQ--MKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~--~~~~~ip~i~~iNKiDr~ 91 (610)
.++.++||.|...|..-+.+..|.+.+.+||.+..+--.-. |..+.+. ..-..||.+++-||||+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 45678999999999999999999999999999987643322 2333332 334689999999999987
No 383
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.75 E-value=0.041 Score=55.42 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=47.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH--HHHHHhcCCCeEEEEecccCCCCCHHHHHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV--NRQMKRYDVPCIAFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v--~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i 102 (610)
++-+.||-|-|--.= |+ .-...+|..++|.=..-|-..|..+. ++ +-=|+||||.|+.+++ .+..++
T Consensus 143 G~DvIIVETVGvGQs--ev-~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE------iaDi~vINKaD~~~A~--~a~r~l 211 (323)
T COG1703 143 GYDVIIVETVGVGQS--EV-DIANMADTFLVVMIPGAGDDLQGIKAGIME------IADIIVINKADRKGAE--KAAREL 211 (323)
T ss_pred CCCEEEEEecCCCcc--hh-HHhhhcceEEEEecCCCCcHHHHHHhhhhh------hhheeeEeccChhhHH--HHHHHH
Confidence 688999999885321 11 12357899999988888888887652 33 3348999999977543 344444
Q ss_pred HHHh
Q psy12559 103 RQKV 106 (610)
Q Consensus 103 ~~~l 106 (610)
+..|
T Consensus 212 ~~al 215 (323)
T COG1703 212 RSAL 215 (323)
T ss_pred HHHH
Confidence 4433
No 384
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.74 E-value=0.03 Score=50.77 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=53.8
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeEEEEecccCCCCCHHHHHHHHH
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQMR 103 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i~~iNKiDr~~~~~~~~~~~i~ 103 (610)
+.+.+||||++.+ .....++..+|.+++|++...--..++...++.+.+. ..+..+++|+++.. ...++..+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~~~~~~~~ 121 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGKKVFKRLS 121 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHHHHHHHHH
Confidence 7899999998754 4457889999999999998754444556666666432 34566999999754 23444555554
Q ss_pred HH
Q psy12559 104 QK 105 (610)
Q Consensus 104 ~~ 105 (610)
+.
T Consensus 122 ~~ 123 (139)
T cd02038 122 NV 123 (139)
T ss_pred HH
Confidence 43
No 385
>KOG2486|consensus
Probab=95.71 E-value=0.028 Score=55.85 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=57.0
Q ss_pred eeEEEecCeeEEEecCCCC----------cCcHHHHHHHH---hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEE
Q psy12559 18 ATYTLWKDHNINIIDTPGH----------VDFTVEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 84 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh----------~dF~~ev~~al---~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~ 84 (610)
.+.+..-+..+.++|.||+ .|+..-+...+ +..=-+.+++||+.+++.-+-..+..+-+.++|..++
T Consensus 175 ~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~v 254 (320)
T KOG2486|consen 175 AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSV 254 (320)
T ss_pred eeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEe
Confidence 4445555778999999992 24433333333 2334577899999999999999999999999999999
Q ss_pred EecccCC
Q psy12559 85 INKLDRL 91 (610)
Q Consensus 85 iNKiDr~ 91 (610)
.||||+.
T Consensus 255 fTK~DK~ 261 (320)
T KOG2486|consen 255 FTKCDKQ 261 (320)
T ss_pred eehhhhh
Confidence 9999986
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.018 Score=60.83 Aligned_cols=78 Identities=19% Similarity=0.189 Sum_probs=56.0
Q ss_pred ecCeeEEEecCCCCc---CcHHHHHHHHhhcCEE---EEEEecCCCcchhhHHHHHHHHhcCCCe-------EEEEeccc
Q psy12559 23 WKDHNINIIDTPGHV---DFTVEVERALRVLDGA---ILVLCAVGGVQSQTLTVNRQMKRYDVPC-------IAFINKLD 89 (610)
Q Consensus 23 ~~~~~inlIDTPGh~---dF~~ev~~al~~~D~a---ilVvDa~~Gv~~qt~~v~~~~~~~~ip~-------i~~iNKiD 89 (610)
|.++.+.||||||.. ++..+....+..++.. +||++|..|...-++.++++....++|. =++++|+|
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 467899999999976 5556666666655544 9999999998888888887766655543 37789999
Q ss_pred CCCCCHHHHHHH
Q psy12559 90 RLGADPYRVINQ 101 (610)
Q Consensus 90 r~~~~~~~~~~~ 101 (610)
-. ..+..+++-
T Consensus 293 Et-~~~G~~l~~ 303 (374)
T PRK14722 293 EA-SNLGGVLDT 303 (374)
T ss_pred cC-CCccHHHHH
Confidence 65 244444443
No 387
>KOG1954|consensus
Probab=95.68 E-value=0.025 Score=58.05 Aligned_cols=67 Identities=27% Similarity=0.335 Sum_probs=57.5
Q ss_pred eeEEEecCCCC-----------cCcHHHHHHHHhhcCEEEEEEecCC-CcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGH-----------VDFTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh-----------~dF~~ev~~al~~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..|++|||||. -||.+-...-..-+|.++++.|+-. .+...+++++.+++-+.=.+=+|+||.|...
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVD 225 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccC
Confidence 36999999994 4788888888888999999999875 6888999999999977777779999999763
No 388
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.53 E-value=0.085 Score=53.63 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=34.9
Q ss_pred hcCEEEEEEecCCCcc--hhhHHHHHHHHhcCCCeEEEEecccCCCC
Q psy12559 49 VLDGAILVLCAVGGVQ--SQTLTVNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 49 ~~D~ailVvDa~~Gv~--~qt~~v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
..|-+++|+.+.++-- .+-.+.+-.|...++.+++++||+|+...
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~ 125 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD 125 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc
Confidence 3788899999887542 23455666788899999999999999854
No 389
>KOG1490|consensus
Probab=95.30 E-value=0.052 Score=58.04 Aligned_cols=68 Identities=26% Similarity=0.355 Sum_probs=43.5
Q ss_pred cCeeEEEecCCCCcCcHH--------HHHHHHhhcC-EEEEEEecCC--C--cchhhHHHHHHHHh--cCCCeEEEEecc
Q psy12559 24 KDHNINIIDTPGHVDFTV--------EVERALRVLD-GAILVLCAVG--G--VQSQTLTVNRQMKR--YDVPCIAFINKL 88 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~--------ev~~al~~~D-~ailVvDa~~--G--v~~qt~~v~~~~~~--~~ip~i~~iNKi 88 (610)
+--++..|||||.-|--- ..+.||.-.- +++++.|-++ | +..|- .++..++. .|.|.|+++||+
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKI 291 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecc
Confidence 335789999999766422 2445665443 4566888765 2 23333 23333332 488999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|...
T Consensus 292 D~m~ 295 (620)
T KOG1490|consen 292 DAMR 295 (620)
T ss_pred cccC
Confidence 9874
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.12 E-value=0.39 Score=52.07 Aligned_cols=62 Identities=27% Similarity=0.330 Sum_probs=43.0
Q ss_pred CeeEEEecCCCCcCcHHHH------HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCe-EEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEV------ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPC-IAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev------~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~-i~~iNKiDr~ 91 (610)
++.+.+|||||...+..+. ..++...|.+++|+|+..| | ..+++++.+ .+++ -+++||+|-.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---q--~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---Q--QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---H--HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 4589999999977655442 3445567999999999887 2 333444443 3555 4889999964
No 391
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.11 E-value=0.063 Score=46.20 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=46.9
Q ss_pred eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC----eEEEEec
Q psy12559 27 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP----CIAFINK 87 (610)
Q Consensus 27 ~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip----~i~~iNK 87 (610)
.+.+||||+..+. ....++..+|.++++++....-...+...++.+++.+.+ ..+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7899999998654 456789999999999998877667777888877776654 3488886
No 392
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.06 E-value=0.058 Score=54.87 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.5
Q ss_pred ceeEEEeccccCCccHHHHHHHHHH
Q psy12559 203 KFTPVLVGTALKNKGVQTLLDAVLD 227 (610)
Q Consensus 203 ~~~Pv~~~Sa~~~~gv~~Lld~i~~ 227 (610)
...|++..||++|.|++.|+++|..
T Consensus 262 p~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 262 PEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467888899999999999999865
No 393
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.00 E-value=0.92 Score=47.87 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.0
Q ss_pred eEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecC
Q psy12559 27 NINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAV 60 (610)
Q Consensus 27 ~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~ 60 (610)
++.|+||||..+ ........++.+|+.+.|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 699999999654 3345777889999999999995
No 394
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.94 E-value=0.25 Score=48.26 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=52.9
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCc-------HHHHHHHHh----hcCEEEEEEecCCCcchhhHHHHHHHHh-cC
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDF-------TVEVERALR----VLDGAILVLCAVGGVQSQTLTVNRQMKR-YD 78 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF-------~~ev~~al~----~~D~ailVvDa~~Gv~~qt~~v~~~~~~-~~ 78 (610)
..|-.....+..+++..+++|||||..|- ..++.+++. ..++.|+|+... -.+...+..++.+.+ ++
T Consensus 34 ~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG 112 (212)
T PF04548_consen 34 SVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFG 112 (212)
T ss_dssp S--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHC
T ss_pred CcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHcc
Confidence 45555666677899999999999997552 234555443 368999999988 677777777766553 23
Q ss_pred ----CCeEEEEecccCCCC
Q psy12559 79 ----VPCIAFINKLDRLGA 93 (610)
Q Consensus 79 ----ip~i~~iNKiDr~~~ 93 (610)
.-+|++++..|....
T Consensus 113 ~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 113 EEIWKHTIVVFTHADELED 131 (212)
T ss_dssp GGGGGGEEEEEEEGGGGTT
T ss_pred HHHHhHhhHHhhhcccccc
Confidence 236788888888753
No 395
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.90 E-value=0.11 Score=51.55 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=47.2
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH------hcCCCeEEEEeccc
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK------RYDVPCIAFINKLD 89 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~------~~~ip~i~~iNKiD 89 (610)
++++.+.||||||+.+ ..+..++..+|.+|+.+....---..+...++.+. ..++|..+++|.++
T Consensus 81 ~~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 81 LQGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred hCCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 3578999999999875 55778999999999888775433333444443322 34778889999997
No 396
>KOG0393|consensus
Probab=94.78 E-value=0.11 Score=49.51 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=47.7
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh--hHHHHHHHHhc--CCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ--TLTVNRQMKRY--DVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q--t~~v~~~~~~~--~ip~i~~iNKiDr~ 91 (610)
..+.|+||.|..||..-.--+.+.+|..+++.+...--... ...++-.++.+ ++|+|++-+|.|+.
T Consensus 53 v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 56789999999999763334667889998887765433222 34455555554 59999999999986
No 397
>PTZ00258 GTP-binding protein; Provisional
Probab=94.75 E-value=0.89 Score=48.50 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=37.8
Q ss_pred cceeecceeEEEecC-----------------eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecC
Q psy12559 11 GITIQSAATYTLWKD-----------------HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAV 60 (610)
Q Consensus 11 giTi~s~~~~~~~~~-----------------~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~ 60 (610)
+.|++.....+.+.+ .+|.|+||||... ........++.+|++++|||+.
T Consensus 53 ftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 53 FCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 456666666666653 3599999999653 4446778889999999999984
No 398
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.68 E-value=0.11 Score=51.75 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=53.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh--cCCCeEEEEecccCCCCCHHHHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRLGADPYRVINQ 101 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~--~~ip~i~~iNKiDr~~~~~~~~~~~ 101 (610)
.+.+.+||||+. +...+..++..+|.+|+++....--...+. .+.+.... .+.+.-+++|+.|.......+..+.
T Consensus 114 ~~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~ 191 (246)
T TIGR03371 114 ARDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAV 191 (246)
T ss_pred CCCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHH
Confidence 347999999995 445678899999999999987521111122 12222221 2344568999999764445566677
Q ss_pred HHHHhCCC
Q psy12559 102 MRQKVGHN 109 (610)
Q Consensus 102 i~~~l~~~ 109 (610)
+++.++..
T Consensus 192 ~~~~~~~~ 199 (246)
T TIGR03371 192 LRQTLGSR 199 (246)
T ss_pred HHHHhccc
Confidence 77777654
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.68 E-value=0.088 Score=56.65 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=41.3
Q ss_pred CeeEEEecCCCCcCcHH----HHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTV----EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~----ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
++.+.||||||...... |+..-.+ ..|-.++|+||..|-.. ....+...+.--+.-+++||+|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 68999999999765443 3333222 25789999999877433 222222222222456999999975
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.67 E-value=0.81 Score=49.54 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=45.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH------hhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCe-EEEEecccCCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL------RVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPC-IAFINKLDRLGAD 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al------~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~-i~~iNKiDr~~~~ 94 (610)
+++.+.||||||...........+ ...|.+++|+|+..| | ...++++.+ .+++ =+++||+|... .
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~~-~ 254 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGDA-R 254 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCcc-c
Confidence 457899999999654433322222 236899999999754 2 233333332 3454 37899999531 1
Q ss_pred HHHHHHHHHHHhCC
Q psy12559 95 PYRVINQMRQKVGH 108 (610)
Q Consensus 95 ~~~~~~~i~~~l~~ 108 (610)
.-...++...++.
T Consensus 255 -~G~~lsi~~~~~~ 267 (428)
T TIGR00959 255 -GGAALSVRSVTGK 267 (428)
T ss_pred -ccHHHHHHHHHCc
Confidence 1224555555663
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.67 E-value=0.36 Score=51.28 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=79.0
Q ss_pred cCeeEEEecCCCCcC----cHHHHHHH--HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVD----FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~d----F~~ev~~a--l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~ 96 (610)
+++.+.++||.|-.- ...|+..- .-.-|=.++|+||.-| |...-...+....+++- ++++|+|-.. -.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGda--RG 255 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGDA--RG 255 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCCC--cc
Confidence 357899999999433 33343322 2234889999999876 44333334445667774 8999999651 12
Q ss_pred HHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCce-EeecC-chhHHHHHHH--HHHHHHHHHhcC
Q psy12559 97 RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNL-RIEEI-PADLKKEAES--KRQELIEHVAEG 172 (610)
Q Consensus 97 ~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~--~~~~l~e~~~~~ 172 (610)
-.--+++...|.... |.|. |+.. ..+++ |+.+..++.- --..|+|.+.+.
T Consensus 256 GaALS~~~~tg~PIk-----------FiGt---------------GEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~ 309 (451)
T COG0541 256 GAALSARAITGKPIK-----------FIGT---------------GEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEV 309 (451)
T ss_pred hHHHhhHHHHCCCeE-----------EEec---------------CCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHh
Confidence 223345555554322 1121 1111 11222 3444443321 122344444333
Q ss_pred C-----HHHHHhhhcCCCCCHHHHHHHHHHhhhc
Q psy12559 173 D-----EILGEMFLEEKSISEDDIKKAIRRSTLT 201 (610)
Q Consensus 173 d-----d~l~e~~l~~~~~~~~~l~~~l~~~~~~ 201 (610)
. +.+.++...|. ++-+++...++..-..
T Consensus 310 ~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~km 342 (451)
T COG0541 310 VDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKM 342 (451)
T ss_pred hhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHcc
Confidence 2 34566666665 8999888777654433
No 402
>KOG0091|consensus
Probab=94.60 E-value=0.28 Score=44.85 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=47.1
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh-cC---CCe-EEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-YD---VPC-IAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~-~~---ip~-i~~iNKiDr~ 91 (610)
.++.|+||.|...|.+-+.+..|.+=|+++|.|.+.--.-.-...| +.|.. .+ .++ .+|-.|.|+.
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 4678999999999999999999999999999998764332222233 33322 22 223 4778899975
No 403
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.53 E-value=0.12 Score=51.83 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=58.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC-CeEEEEecccCCCCCHH--HHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV-PCIAFINKLDRLGADPY--RVINQ 101 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i-p~i~~iNKiDr~~~~~~--~~~~~ 101 (610)
.+.+.|||||+..+ ..+..++..+|.+|+|+.....--..+..+++.+...+. +..+++|+++....... ..+++
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~ 188 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDD 188 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCchhcccccccCHHH
Confidence 57899999999765 356678899999999999876656677777777776665 45689999985321111 12455
Q ss_pred HHHHhCC
Q psy12559 102 MRQKVGH 108 (610)
Q Consensus 102 i~~~l~~ 108 (610)
+.+.++.
T Consensus 189 ~~~~~~~ 195 (261)
T TIGR01968 189 VLEILSI 195 (261)
T ss_pred HHHHhCC
Confidence 6666664
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=94.43 E-value=1 Score=48.77 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=45.5
Q ss_pred cCeeEEEecCCCCcCc----HHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCe-EEEEecccCCCCC
Q psy12559 24 KDHNINIIDTPGHVDF----TVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPC-IAFINKLDRLGAD 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~-i~~iNKiDr~~~~ 94 (610)
+++.+.||||||..-. ..|...-.+ ..|..++|+|+..| | ...++++.+ .+++ -+++||+|-. +.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~-~r 255 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD-AR 255 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc-cc
Confidence 3578999999996533 223222222 35788999998754 2 233444332 3544 4888999953 12
Q ss_pred HHHHHHHHHHHhCC
Q psy12559 95 PYRVINQMRQKVGH 108 (610)
Q Consensus 95 ~~~~~~~i~~~l~~ 108 (610)
.-...++...++.
T Consensus 256 -gG~alsi~~~~~~ 268 (433)
T PRK10867 256 -GGAALSIRAVTGK 268 (433)
T ss_pred -ccHHHHHHHHHCc
Confidence 2234455566663
No 405
>CHL00175 minD septum-site determining protein; Validated
Probab=94.34 E-value=0.15 Score=52.17 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCCCCHH--HHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPY--RVINQ 101 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~~~--~~~~~ 101 (610)
.+.+.+||||+..+ ..+..++..+|.+++|++....--..+..+++.+.+.+.+. -+++|+++....+.. ...++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 57899999998754 45678889999999999876554556677777777777654 588999986422111 13456
Q ss_pred HHHHhCCC
Q psy12559 102 MRQKVGHN 109 (610)
Q Consensus 102 i~~~l~~~ 109 (610)
+.+.++..
T Consensus 204 l~~~~~~~ 211 (281)
T CHL00175 204 VQEMLGIP 211 (281)
T ss_pred HHHHhCCC
Confidence 77777754
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.33 E-value=0.082 Score=48.52 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=40.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++.+.||||||.. ..+...++.+|-+|+|+....+- ...+.+. .-...--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D---~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGD---DIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchh---HHHHhhh-hHhhhcCEEEEeCCC
Confidence 36889999999954 44456999999999999876322 2222221 223344589999998
No 407
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.26 E-value=0.15 Score=51.85 Aligned_cols=65 Identities=25% Similarity=0.374 Sum_probs=40.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHH-------HHh-----hcCEEEEEEecCCCcchhhHHHHHHHHhcCCC-eEEEEecccC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVER-------ALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDR 90 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~-------al~-----~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip-~i~~iNKiDr 90 (610)
+++.+.||||||.......... ... ..|..++|+|+..|-. +........+ .++ .-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~-~~~~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNE-AVGLTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHh-hCCCCEEEEEccCC
Confidence 5689999999998754443322 222 2799999999976522 2222222111 233 3589999997
Q ss_pred C
Q psy12559 91 L 91 (610)
Q Consensus 91 ~ 91 (610)
.
T Consensus 230 ~ 230 (272)
T TIGR00064 230 T 230 (272)
T ss_pred C
Confidence 4
No 408
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.08 E-value=0.25 Score=53.50 Aligned_cols=78 Identities=14% Similarity=0.297 Sum_probs=63.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~~~~~i 102 (610)
+.++|+|+.|| .| ...++-...++|.++|+||+.-|.+-.|.+.+..+..+|+|++ -|++.+|.... ...+.++
T Consensus 111 K~RRiTflEcp--~D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~ 185 (1077)
T COG5192 111 KTRRITFLECP--SD-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSI 185 (1077)
T ss_pred ceeEEEEEeCh--HH-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHH
Confidence 46799999999 34 4567778899999999999999999999999999999999997 58999998742 2344445
Q ss_pred HHHh
Q psy12559 103 RQKV 106 (610)
Q Consensus 103 ~~~l 106 (610)
+.+|
T Consensus 186 KKrl 189 (1077)
T COG5192 186 KKRL 189 (1077)
T ss_pred HHHH
Confidence 5544
No 409
>PRK11670 antiporter inner membrane protein; Provisional
Probab=94.02 E-value=0.28 Score=52.23 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=62.3
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCC---HHH
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGAD---PYR 97 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~---~~~ 97 (610)
.|+.+.+.+||||.......-+..++..+|++|+|+-...--...+.+.++.+.+.++|++ +++|+.|....+ ..+
T Consensus 212 ~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~ 291 (369)
T PRK11670 212 LWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEP 291 (369)
T ss_pred hhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhh
Confidence 3778999999998754433334556667899999986644323345566677777899987 899998754211 111
Q ss_pred -----HHHHHHHHhCCCeeEeeccc
Q psy12559 98 -----VINQMRQKVGHNAAFLQIPI 117 (610)
Q Consensus 98 -----~~~~i~~~l~~~~~~~~~p~ 117 (610)
..+.+.+.++..... ++|.
T Consensus 292 if~~~~~~~lae~~~~~ll~-~IP~ 315 (369)
T PRK11670 292 IFGTGGAEKLAEKYHTQLLG-QMPL 315 (369)
T ss_pred hcccchHHHHHHHcCCcEEE-EeCC
Confidence 367788888764332 4553
No 410
>PHA02518 ParA-like protein; Provisional
Probab=93.91 E-value=0.29 Score=47.29 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=47.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch---hhHHHHHHHHh--cCCCeE-EEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS---QTLTVNRQMKR--YDVPCI-AFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~---qt~~v~~~~~~--~~ip~i-~~iNKiDr~~~~~~~ 97 (610)
..+.+.+|||||.. ...+..++..+|.+|+++....--.. ++...++.... .++|.+ ++.|+.+.......+
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~ 152 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQLYRE 152 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcchHHHH
Confidence 45789999999974 45578899999999999988653222 23333333322 256664 666776643322234
Q ss_pred HHHHH
Q psy12559 98 VINQM 102 (610)
Q Consensus 98 ~~~~i 102 (610)
+.+.+
T Consensus 153 ~~~~l 157 (211)
T PHA02518 153 ARKAL 157 (211)
T ss_pred HHHHH
Confidence 44444
No 411
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.67 E-value=0.28 Score=49.68 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=50.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch---hhHHHHHHH-HhcCCCeE-EEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS---QTLTVNRQM-KRYDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~---qt~~v~~~~-~~~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
++|.+.||||||..... .+..++..+|.+|+++....---. ++...++.. ...+++.. +++|++|. ...
T Consensus 114 ~~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~ 187 (267)
T cd02032 114 EEYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDL 187 (267)
T ss_pred ccCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHH
Confidence 46889999999875422 345668999999999987532212 223333322 23466654 78999984 233
Q ss_pred HHHHHHHhCCCe
Q psy12559 99 INQMRQKVGHNA 110 (610)
Q Consensus 99 ~~~i~~~l~~~~ 110 (610)
++++.+.++...
T Consensus 188 i~~~~~~~~~~v 199 (267)
T cd02032 188 IDKFVEAVGMPV 199 (267)
T ss_pred HHHHHHhCCCCE
Confidence 455555555443
No 412
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.37 E-value=0.27 Score=47.94 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=53.5
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHH--HhhcCEEEEEEecCCCcchhhHHHHHHHHhc----CCCeE-EEEecccCCCCCH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRY----DVPCI-AFINKLDRLGADP 95 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~a--l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~----~ip~i-~~iNKiDr~~~~~ 95 (610)
++.|.+.||||||......- ... ++.+|.++++++...---.-...+++.++.. +++.. +++||+|.. ..
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~ 190 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RE 190 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cH
Confidence 46799999999987632111 112 3489999999976431111123444444432 55543 899999954 33
Q ss_pred HHHHHHHHHHhCCCeeE
Q psy12559 96 YRVINQMRQKVGHNAAF 112 (610)
Q Consensus 96 ~~~~~~i~~~l~~~~~~ 112 (610)
.+.++++.+.++.....
T Consensus 191 ~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 191 TELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 45678888888765443
No 413
>PRK10818 cell division inhibitor MinD; Provisional
Probab=93.36 E-value=0.3 Score=49.51 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=56.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc---------CCCeEEEEecccCCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY---------DVPCIAFINKLDRLGAD 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~---------~ip~i~~iNKiDr~~~~ 94 (610)
..+.+.+||||+... ..+..++..+|.+|+++++..---..+..+++.+... +++..+++|++|.....
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~ 189 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhhhh
Confidence 368999999998875 4567789999999999998754444455666654421 23456889999864211
Q ss_pred H--HHHHHHHHHHhCCC
Q psy12559 95 P--YRVINQMRQKVGHN 109 (610)
Q Consensus 95 ~--~~~~~~i~~~l~~~ 109 (610)
. ...++++.+.++..
T Consensus 190 ~~~~~~~~~~~~~~g~~ 206 (270)
T PRK10818 190 RGDMLSMEDVLEILRIK 206 (270)
T ss_pred hcccccHHHHHHHhCCc
Confidence 1 11356666777754
No 414
>CHL00189 infB translation initiation factor 2; Provisional
Probab=93.20 E-value=0.45 Score=54.91 Aligned_cols=77 Identities=23% Similarity=0.218 Sum_probs=58.4
Q ss_pred EEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCceE
Q psy12559 263 ALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGDTF 339 (610)
Q Consensus 263 ~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gdtl 339 (610)
|.|-+++..+.|.++-+||.+|+++.|..+.+.+.+...-.++|-.+. +...+++++..|.=|+| .++ +.+.||+|
T Consensus 652 a~v~~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk-~~k~~v~ev~~g~ecgi~i~~~~d~~~gD~i 730 (742)
T CHL00189 652 AEVKTVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK-RVKEDVEEAQEGNECGIFIEEFQLWQSGDKI 730 (742)
T ss_pred EEeeEEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh-hcCccccEeCCCCEEEEEeeCCCCCCcCCEE
Confidence 345555555568999999999999999999998877654333333332 44678999999999986 455 88999998
Q ss_pred e
Q psy12559 340 V 340 (610)
Q Consensus 340 ~ 340 (610)
-
T Consensus 731 e 731 (742)
T CHL00189 731 H 731 (742)
T ss_pred E
Confidence 6
No 415
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.16 E-value=0.26 Score=47.53 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=45.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH----h--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL----R--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al----~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~ 97 (610)
+++.+.||||||......+...-+ + ..+-.++|+||..|-.. ...+.+.....++.- ++++|+|-. ..+..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~~~~-lIlTKlDet-~~~G~ 158 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFGIDG-LILTKLDET-ARLGA 158 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSSTCE-EEEESTTSS-STTHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhcccCce-EEEEeecCC-CCccc
Confidence 346799999999876654432222 2 35789999999987433 334445444455554 559999975 33344
Q ss_pred HHH
Q psy12559 98 VIN 100 (610)
Q Consensus 98 ~~~ 100 (610)
++.
T Consensus 159 ~l~ 161 (196)
T PF00448_consen 159 LLS 161 (196)
T ss_dssp HHH
T ss_pred cee
Confidence 443
No 416
>KOG0082|consensus
Probab=93.15 E-value=0.22 Score=51.91 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=64.1
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-----------hhhHHHHHHHHh-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-----------SQTLTVNRQMKR- 76 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-----------~qt~~v~~~~~~- 76 (610)
.|--|...+.+.|..++..+-++|.+|+.-=..........++++|++++-++--+ .++..+++.+..
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 45566667778999999999999999986666667788889999999999876322 234455655543
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.+.++|+|+||+|+.
T Consensus 258 ~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDLF 275 (354)
T ss_pred cccccCcEEEEeecHHHH
Confidence 357899999999985
No 417
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.02 E-value=0.34 Score=49.10 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=50.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHH----HhcCCCeE-EEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQM----KRYDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~----~~~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
++|.+.||||||...-. .+..++..+|.+|+++....---..+..+++.+ ...+++.. +++|+.+. .+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 56899999999875322 245668899999999976432111222333322 24567764 88999763 234
Q ss_pred HHHHHHHhCCCee
Q psy12559 99 INQMRQKVGHNAA 111 (610)
Q Consensus 99 ~~~i~~~l~~~~~ 111 (610)
++++.+.++....
T Consensus 190 ~~~~~~~~g~~vl 202 (270)
T PRK13185 190 IDKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHHcCCCEE
Confidence 5556666665443
No 418
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=92.98 E-value=0.51 Score=53.34 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCce
Q psy12559 263 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGDT 338 (610)
Q Consensus 263 ~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gdt 338 (610)
|.|-+++..++ |.++-+||.+|++++|..+.+.+.+.....++|-.+. +...+++++..|+=|+| .+. +.+.||+
T Consensus 495 a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~-~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~ 573 (587)
T TIGR00487 495 AEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK-RFKDDVKEVSNGYECGIGIKNYNDIKEGDI 573 (587)
T ss_pred EEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh-ccCccccEECCCCEEEEEEeccccCCCCCE
Confidence 34556666666 8999999999999999999998877654434443333 44678999999999986 455 8899999
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
|-
T Consensus 574 i~ 575 (587)
T TIGR00487 574 IE 575 (587)
T ss_pred EE
Confidence 86
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.96 E-value=0.42 Score=49.71 Aligned_cols=73 Identities=29% Similarity=0.315 Sum_probs=45.0
Q ss_pred cCeeEEEecCCCCcCc----HHHHHHHHhh--------cCEEEEEEecCCCcchhhHHHHHHHHhc--CC-CeEEEEecc
Q psy12559 24 KDHNINIIDTPGHVDF----TVEVERALRV--------LDGAILVLCAVGGVQSQTLTVNRQMKRY--DV-PCIAFINKL 88 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~ev~~al~~--------~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~i-p~i~~iNKi 88 (610)
+++.+.||||||...+ +.|.....++ .|..++|+||..|-.... ++..+ .+ +.-+++||+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHHhhCCCCEEEEECC
Confidence 5688999999997543 3444444443 467899999997643222 23322 23 336999999
Q ss_pred cCCCCCHHHHHHHH
Q psy12559 89 DRLGADPYRVINQM 102 (610)
Q Consensus 89 Dr~~~~~~~~~~~i 102 (610)
|.. +....++...
T Consensus 270 D~t-~~~G~~l~~~ 282 (318)
T PRK10416 270 DGT-AKGGVVFAIA 282 (318)
T ss_pred CCC-CCccHHHHHH
Confidence 954 3444444433
No 420
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.74 E-value=0.36 Score=50.41 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=56.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMR 103 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~ 103 (610)
+.+.+.+||||+..+. .+..++..+|.+|+|++..---...+.++++.+...+...-+++|+..+...+ .+++.
T Consensus 203 ~~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~~~~~----~~~i~ 276 (322)
T TIGR03815 203 RGGDLVVVDLPRRLTP--AAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAPAGLD----PEEIA 276 (322)
T ss_pred hcCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCCCCCC----HHHHH
Confidence 4588999999998654 47889999999999998764434556677777776665555678876544334 35566
Q ss_pred HHhCCC
Q psy12559 104 QKVGHN 109 (610)
Q Consensus 104 ~~l~~~ 109 (610)
+.++..
T Consensus 277 ~~lg~~ 282 (322)
T TIGR03815 277 ESLGLP 282 (322)
T ss_pred HHhCCC
Confidence 667643
No 421
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.72 E-value=0.67 Score=47.08 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=51.3
Q ss_pred EecCeeEEEecCCCCcCcH-HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH---hcCCCeE-EEEecccCCCCCHH
Q psy12559 22 LWKDHNINIIDTPGHVDFT-VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK---RYDVPCI-AFINKLDRLGADPY 96 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~-~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~---~~~ip~i-~~iNKiDr~~~~~~ 96 (610)
.|++|-+.||||||..-.. .-...++..+|.+|+++....---.....+++.+. ..+++.. +++|+.+.. .-.
T Consensus 113 ~~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~ 190 (273)
T PRK13232 113 YTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GER 190 (273)
T ss_pred ccccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccH
Confidence 4567899999999864211 01122345889999999764321111223444443 3456664 888976532 226
Q ss_pred HHHHHHHHHhCCC
Q psy12559 97 RVINQMRQKVGHN 109 (610)
Q Consensus 97 ~~~~~i~~~l~~~ 109 (610)
++++.+++.++..
T Consensus 191 ~~~e~l~~~~~~~ 203 (273)
T PRK13232 191 ELLEAFAKKLGSQ 203 (273)
T ss_pred HHHHHHHHHhCCC
Confidence 6788888888753
No 422
>KOG0468|consensus
Probab=92.61 E-value=0.21 Score=55.12 Aligned_cols=69 Identities=20% Similarity=0.390 Sum_probs=62.1
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc-CCee
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPV 608 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~-~~~~ 608 (610)
..|+.+.+++|-++..++++...|++....-|..-..- +++++..|.|.||+-|+.++..|++-| .+++
T Consensus 583 t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseiei 652 (971)
T KOG0468|consen 583 TEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEI 652 (971)
T ss_pred CcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhce
Confidence 45889999999999999999999999999999986655 478999999999999999999999999 4555
No 423
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.53 E-value=0.21 Score=47.54 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=55.6
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC--e-EEEEecccCCCCC-HHHHHHH
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP--C-IAFINKLDRLGAD-PYRVINQ 101 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip--~-i~~iNKiDr~~~~-~~~~~~~ 101 (610)
+.+.+||||+..... +..++..+|.+|++++...---..+..+.+.+++.+.+ . -+++||.+....+ .++....
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~~~~~~~~ 172 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESKLQEEIEE 172 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHHHHHHHHH
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccchHHHHHHH
Confidence 889999999987665 78899999999999998653344556666777766633 3 5899999876332 3444444
Q ss_pred HHHHh
Q psy12559 102 MRQKV 106 (610)
Q Consensus 102 i~~~l 106 (610)
+...+
T Consensus 173 ~~~~~ 177 (195)
T PF01656_consen 173 IEREL 177 (195)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 44333
No 424
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=92.41 E-value=0.88 Score=52.99 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=59.6
Q ss_pred EEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCce
Q psy12559 263 ALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGDT 338 (610)
Q Consensus 263 ~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gdt 338 (610)
|.|-++|..++ |.++-++|..|+++.|..+.+.+.|...-.++|-.+. +...+|.++..|+=|+| .++ +++.||+
T Consensus 697 a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk-~~k~~v~ev~~g~ecgi~~~~~~d~~~gD~ 775 (787)
T PRK05306 697 AEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK-RFKDDVKEVRAGYECGIGLENYNDIKEGDI 775 (787)
T ss_pred EEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc-ccCcCccEeCCCCEEEEEeeccccCCCCCE
Confidence 44556666666 9999999999999999999999877644333333332 45678999999999986 456 8899999
Q ss_pred Ee
Q psy12559 339 FV 340 (610)
Q Consensus 339 l~ 340 (610)
|-
T Consensus 776 ie 777 (787)
T PRK05306 776 IE 777 (787)
T ss_pred EE
Confidence 86
No 425
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=92.37 E-value=0.25 Score=45.84 Aligned_cols=63 Identities=24% Similarity=0.155 Sum_probs=40.7
Q ss_pred CeeEEEecCCCCcCcHHH--------HHHHHhhcCEEEEEEecCCCcch--hhHHHHHHHHhcCCCeEEEEecccC
Q psy12559 25 DHNINIIDTPGHVDFTVE--------VERALRVLDGAILVLCAVGGVQS--QTLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e--------v~~al~~~D~ailVvDa~~Gv~~--qt~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
...+.||||||-.+=..- ...+.-.+|+.+.|||+...... +...+.+|+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 357799999998753322 22234457999999999764431 123344555543 3789999995
No 426
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.35 E-value=0.57 Score=46.76 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=51.9
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
..+.+||||--. .-.|.+++..+|.||+|--.+.-=-.-.+++++.++.+++|..++|||-+.
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 379999998532 246999999999999998877544456788899999999999999999943
No 427
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=92.23 E-value=0.38 Score=51.85 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=57.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-------HHHHHHhc--CC--CeE-EEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-------VNRQMKRY--DV--PCI-AFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-------v~~~~~~~--~i--p~i-~~iNKiDr~ 91 (610)
+.|.+.|||||+...+ .+..||..+|.+|+.+.+..---..+.. +++.+.+. ++ ..+ +++|++|.-
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 4689999999998754 6888999999999998765321112222 23344333 22 233 799999976
Q ss_pred CCCHHHHHHHHHHHhCCC
Q psy12559 92 GADPYRVINQMRQKVGHN 109 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~ 109 (610)
...-.++.+.+++.++..
T Consensus 328 ~~~~~~~~~~l~~~~~~~ 345 (405)
T PRK13869 328 DAPQTKVAALLRNMFEDH 345 (405)
T ss_pred CcHHHHHHHHHHHHhhhh
Confidence 555567888898888754
No 428
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=92.22 E-value=0.19 Score=49.30 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=56.2
Q ss_pred cCeeEEEecCCCCc--CcHHH---HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC-CCCHH
Q psy12559 24 KDHNINIIDTPGHV--DFTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL-GADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~--dF~~e---v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~-~~~~~ 96 (610)
+++.+.+||+||.. .+... ...+...-+-+|+|.+..-|--.++...++.++..+++.. +++|+++.. .....
T Consensus 102 ~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~~~~~~ 181 (222)
T PRK00090 102 QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPEPGLRHA 181 (222)
T ss_pred hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCcchhHHH
Confidence 46789999999853 11111 1111112245778888776766667777888888888875 789999875 33344
Q ss_pred HHHHHHHHHhCCC
Q psy12559 97 RVINQMRQKVGHN 109 (610)
Q Consensus 97 ~~~~~i~~~l~~~ 109 (610)
+..+.+++.++..
T Consensus 182 ~~~~~l~~~~gi~ 194 (222)
T PRK00090 182 ENLATLERLLPAP 194 (222)
T ss_pred HHHHHHHHHcCCC
Confidence 6677788777643
No 429
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=92.15 E-value=0.36 Score=49.03 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=50.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEec
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINK 87 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNK 87 (610)
+.|.+.|||||--.. ..+.....+.+|++|+|+.+..--..+.+...+++++.+.+.+ +|+|+
T Consensus 211 ~~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 211 GDYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred hcCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 458899999997533 3456667789999999999877666677888888888999988 88885
No 430
>KOG2484|consensus
Probab=92.09 E-value=0.39 Score=50.24 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEEecCCCCc-CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH-hcC-CCeEEEEecccCCCCCHHHHHHHHHH
Q psy12559 28 INIIDTPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK-RYD-VPCIAFINKLDRLGADPYRVINQMRQ 104 (610)
Q Consensus 28 inlIDTPGh~-dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~-~~~-ip~i~~iNKiDr~~~~~~~~~~~i~~ 104 (610)
.+-.|-++|. -|..|....+..+|.+|-|+||.+........+=+++. ..+ ...|+++||+|+. +.+++++...
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV---PrEv~e~Wl~ 200 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV---PREVVEKWLV 200 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC---CHHHHHHHHH
Confidence 4455556654 36778889999999999999999987665555555443 233 7889999999997 4555555554
Q ss_pred Hh
Q psy12559 105 KV 106 (610)
Q Consensus 105 ~l 106 (610)
.|
T Consensus 201 YL 202 (435)
T KOG2484|consen 201 YL 202 (435)
T ss_pred HH
Confidence 44
No 431
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=91.69 E-value=0.84 Score=44.69 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=50.9
Q ss_pred CeeEEEecCCCCcCcHHH-HHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVE-VERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e-v~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~ 91 (610)
.|.+.++|||-......- +...+.. +|.+++|+....--..+++..++.+++.+++. -+++|+....
T Consensus 113 ~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 113 LYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 389999999964332222 2333333 48999999998887888999999999999887 4999998765
No 432
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.61 E-value=0.64 Score=44.19 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.0
Q ss_pred ceeEEEeccccCCccHHHHHHHHHHh
Q psy12559 203 KFTPVLVGTALKNKGVQTLLDAVLDY 228 (610)
Q Consensus 203 ~~~Pv~~~Sa~~~~gv~~Lld~i~~~ 228 (610)
.-.|+++.|+++|.|++.+++++...
T Consensus 174 p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 174 PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 44688999999999999999988643
No 433
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=91.57 E-value=0.36 Score=51.59 Aligned_cols=71 Identities=25% Similarity=0.513 Sum_probs=57.1
Q ss_pred HhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEe-----ccHHHHHHHHHHHHhHcCCee
Q psy12559 534 FILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPV 608 (610)
Q Consensus 534 f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~g-----mge~~lei~~~~l~~~~~~~~ 608 (610)
|+. ..|+..+.+-|....+...+-.+|+++.-.|.++.++.+ |.+..=.| .|-+||||+.+||+++|++++
T Consensus 293 fk~--~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E~E--tS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldl 368 (603)
T COG0481 293 FKE--VKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEPE--TSQALGFGFRCGFLGLLHMEIIQERLEREFDLDL 368 (603)
T ss_pred CCc--CCceEEEeecccChhHHHHHHHHHHhcccccceeeeccc--cchhccCceeehhhhHHHHHHHHHHHHHhhCcce
Confidence 444 457778888888888999999999999999999988765 44332222 589999999999999999875
No 434
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=91.48 E-value=0.61 Score=50.04 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=57.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC----Ccc---hhhHHHHHHHHhcC----CCe-EEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQ---SQTLTVNRQMKRYD----VPC-IAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~----Gv~---~qt~~v~~~~~~~~----ip~-i~~iNKiDr~ 91 (610)
+.|.+.|||||+..+. .+..++..+|.+|+++.... +.. .....+++.+.+.+ +.. -+++|+.|..
T Consensus 233 ~~yD~IiiD~pp~~~~--~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGF--LTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred hcCCEEEEeCCccHhH--HHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 4689999999998654 58899999999999987643 111 11112333444332 223 3789999976
Q ss_pred CCCHHHHHHHHHHHhCCCee
Q psy12559 92 GADPYRVINQMRQKVGHNAA 111 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~~ 111 (610)
.....+..+.+++.++....
T Consensus 311 ~~~~~~~~~~l~~~~~~~vl 330 (387)
T TIGR03453 311 DGPQAQMVAFLRSLFGDHVL 330 (387)
T ss_pred CccHHHHHHHHHHHhccccc
Confidence 55567788888888875433
No 435
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=91.37 E-value=0.53 Score=47.62 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=50.3
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH----hcCCCeE-EEEecccCCCCCHHH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK----RYDVPCI-AFINKLDRLGADPYR 97 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~----~~~ip~i-~~iNKiDr~~~~~~~ 97 (610)
+++|.+.+|||||...-. .+..++..+|.+|+++...----..+..+++.+. ..+++.. +++|++|.. +
T Consensus 113 ~~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~ 186 (268)
T TIGR01281 113 LDDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----D 186 (268)
T ss_pred cccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----H
Confidence 356899999999864311 1234688999999988653221122333333222 3456653 889999853 4
Q ss_pred HHHHHHHHhCCCee
Q psy12559 98 VINQMRQKVGHNAA 111 (610)
Q Consensus 98 ~~~~i~~~l~~~~~ 111 (610)
.++++.+.++....
T Consensus 187 ~~~~~~~~~~~~vl 200 (268)
T TIGR01281 187 LIERFNERVGMPVL 200 (268)
T ss_pred HHHHHHHHcCCCEE
Confidence 55666666665433
No 436
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.27 E-value=0.69 Score=47.52 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=52.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCeE-EEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
++|.+.+|||||.... .....++..+|.+|++++...---..+..+++.++. .+++.. +++|+.|. ...
T Consensus 114 ~~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~ 187 (290)
T CHL00072 114 YEYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDL 187 (290)
T ss_pred ccCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhH
Confidence 3688999999997432 224467888999999998754222223334333322 245554 88999873 345
Q ss_pred HHHHHHHhCCCeeEeecc
Q psy12559 99 INQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 99 ~~~i~~~l~~~~~~~~~p 116 (610)
+.++.+.++...+. .+|
T Consensus 188 ~~~~~~~~~~~vl~-~Ip 204 (290)
T CHL00072 188 IDKYVEACPMPVLE-VLP 204 (290)
T ss_pred HHHHHHHcCCceEE-ECC
Confidence 56666777665443 444
No 437
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.25 E-value=0.22 Score=48.52 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=48.4
Q ss_pred cCeeEEEecC-CCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC-CCeEEEEecccCC
Q psy12559 24 KDHNINIIDT-PGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDT-PGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~-ip~i~~iNKiDr~ 91 (610)
+.+.+.++|| .|..-|..-+ .+.+|..|+|+|.+.---.-.+++-+.+.+.+ .++.+++||+|-.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4578999999 4666676433 45689999999987533344577788888999 5556999999965
No 438
>PRK14974 cell division protein FtsY; Provisional
Probab=91.24 E-value=0.58 Score=49.00 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=41.0
Q ss_pred cCeeEEEecCCCCcC----cHHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcC--CC-eEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVD----FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYD--VP-CIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~d----F~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~--ip-~i~~iNKiDr~ 91 (610)
.++.+.||||||... +..+...-.+ ..|..++|+||..|- ..+++++.+. ++ --+++||+|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 356799999999764 3344333323 358999999997752 3344444332 33 35889999975
No 439
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=91.22 E-value=0.24 Score=53.14 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred hcceeecceeEEEe-cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-----------hhhHHHHHHHHh-
Q psy12559 10 RGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-----------SQTLTVNRQMKR- 76 (610)
Q Consensus 10 RgiTi~s~~~~~~~-~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-----------~qt~~v~~~~~~- 76 (610)
|.-|.......|.+ ++..+.++|..|...-.......+..++++|+||+-++--+ ..+..+|+.+..
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 44555556778888 99999999999997766677778889999999999764322 234556665543
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.+.|+|+|+||+|..
T Consensus 299 ~~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGGTTSEEEEEEE-HHHH
T ss_pred cccccCceEEeeecHHHH
Confidence 478999999999964
No 440
>KOG0462|consensus
Probab=90.71 E-value=0.36 Score=52.40 Aligned_cols=73 Identities=19% Similarity=0.391 Sum_probs=56.8
Q ss_pred HhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCC--Cc-eEEEeccHHHHHHHHHHHHhHcCCee
Q psy12559 534 FILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPES--KE-TLVSGMGELHLEIYAQRMEREYNCPV 608 (610)
Q Consensus 534 f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t--~~-~~I~gmge~~lei~~~~l~~~~~~~~ 608 (610)
|+.+..+-+ +..-|-...+...+-.++++++-+|++..++.+.++ ++ .++.+.|.+||+|+.++|+++||.++
T Consensus 343 ~~~~~pMvF--vg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~el 418 (650)
T KOG0462|consen 343 FEPTKPMVF--VGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAEL 418 (650)
T ss_pred CCCCcceEE--eccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCcee
Confidence 444333333 444455555778889999999999999999998765 33 47888999999999999999999875
No 441
>KOG0448|consensus
Probab=90.55 E-value=0.77 Score=51.24 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=57.8
Q ss_pred cceeEEEecCe-------eEEEecCCCC---cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHhcCCCeE-E
Q psy12559 16 SAATYTLWKDH-------NINIIDTPGH---VDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKRYDVPCI-A 83 (610)
Q Consensus 16 s~~~~~~~~~~-------~inlIDTPGh---~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~~~ip~i-~ 83 (610)
.+...+.|++- -+.|||.||- ..+...+-.-.-.+|..|+|+.|-.-. .++++ .+..+.+. .|-| +
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl-t~sek~Ff~~vs~~-KpniFI 266 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL-TLSEKQFFHKVSEE-KPNIFI 266 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh-HHHHHHHHHHhhcc-CCcEEE
Confidence 34566667542 6899999995 345666666677889999999986543 44544 44555544 6765 6
Q ss_pred EEecccCCCCCHHHHHHHHHHH
Q psy12559 84 FINKLDRLGADPYRVINQMRQK 105 (610)
Q Consensus 84 ~iNKiDr~~~~~~~~~~~i~~~ 105 (610)
+.||+|.. ++-.+..+.++++
T Consensus 267 lnnkwDas-ase~ec~e~V~~Q 287 (749)
T KOG0448|consen 267 LNNKWDAS-ASEPECKEDVLKQ 287 (749)
T ss_pred Eechhhhh-cccHHHHHHHHHH
Confidence 67789975 4445555555554
No 442
>KOG1673|consensus
Probab=90.47 E-value=2.5 Score=38.44 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhcCCCe--EE
Q psy12559 7 ERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRYDVPC--IA 83 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~~ip~--i~ 83 (610)
++..|+-.--..+++.-....+.++|.-|...|....--|-..+-+.+++.|-+.--+-.. ..+.+||+..|.-. |+
T Consensus 50 ~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPil 129 (205)
T KOG1673|consen 50 TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPIL 129 (205)
T ss_pred HHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEE
Confidence 3444544433333443344567799999999888776666666677888999877655554 44568998877653 57
Q ss_pred EEecccCC
Q psy12559 84 FINKLDRL 91 (610)
Q Consensus 84 ~iNKiDr~ 91 (610)
+-+|-|..
T Consensus 130 vGTKyD~f 137 (205)
T KOG1673|consen 130 VGTKYDLF 137 (205)
T ss_pred eccchHhh
Confidence 88898864
No 443
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=90.21 E-value=1 Score=46.94 Aligned_cols=110 Identities=18% Similarity=0.287 Sum_probs=72.8
Q ss_pred HHhcceeecceeEEEecCe--eEEEecCCCCcCcHHH------------------------HHHHHh----hcCEEEEEE
Q psy12559 8 RQRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVE------------------------VERALR----VLDGAILVL 57 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~--~inlIDTPGh~dF~~e------------------------v~~al~----~~D~ailVv 57 (610)
.++++.|..+...+.-++. .+|+|||||+-||... ..|.-+ -+++++..|
T Consensus 62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI 141 (373)
T COG5019 62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI 141 (373)
T ss_pred CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence 4566777777777766654 6789999999887542 111111 147889888
Q ss_pred ecC-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC-HHHHHHHHHHHhCCCeeEeecccc
Q psy12559 58 CAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIG 118 (610)
Q Consensus 58 Da~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~ 118 (610)
-.+ .|+.+......+.+.+ .+-.|-||-|-|..-.+ ....-+.|++.+...-+++-.|+.
T Consensus 142 ~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd 203 (373)
T COG5019 142 RPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYD 203 (373)
T ss_pred cCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCC
Confidence 854 7999999888887654 57788899999988432 334455666666544444433543
No 444
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=89.97 E-value=1.1 Score=47.92 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC----CcchhhH----HHHHHHHh--cCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQSQTL----TVNRQMKR--YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~----Gv~~qt~----~v~~~~~~--~~ip~i~~iNKiDr~~~ 93 (610)
++|-+.|||||+...+ -+..||..+|.+|+.+.+.. |+ .|.. .+.+.... .+...-+++|++|.-..
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~~s~~s~-~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~ 309 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAELFDYVSV-LQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVG 309 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcHHHHHHH-HHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCc
Confidence 4689999999998766 58889999999998886542 21 1111 12222221 12233389999996533
Q ss_pred CH-HHHHHHHHHHhCCCee
Q psy12559 94 DP-YRVINQMRQKVGHNAA 111 (610)
Q Consensus 94 ~~-~~~~~~i~~~l~~~~~ 111 (610)
.. +.+.+.+++.++....
T Consensus 310 ~~~~~i~~~l~~~~g~~vl 328 (387)
T PHA02519 310 NQSRWMEEQIRNTWGSMVL 328 (387)
T ss_pred hHHHHHHHHHHHHhccccc
Confidence 33 4477889999986543
No 445
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=89.96 E-value=0.59 Score=47.49 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=37.0
Q ss_pred cceeecceeEEEecCe-----------------eEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC
Q psy12559 11 GITIQSAATYTLWKDH-----------------NINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 11 giTi~s~~~~~~~~~~-----------------~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~ 61 (610)
+.|++.....+.+.+. .|.|+||||..+ +.......++.+|+.+.|||+.+
T Consensus 30 ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 30 FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred ccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 4566665555555443 599999999653 34467777899999999999864
No 446
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=89.93 E-value=1.6 Score=47.65 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=59.2
Q ss_pred EEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCc
Q psy12559 262 IALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGD 337 (610)
Q Consensus 262 ~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gd 337 (610)
.+.+-+++..++ |.++-++|..|++++|..+...+.+....-+.+..+. +..+++.++.+|.-|+| .|. +.+.||
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk-~~kddv~ev~~G~ecgI~i~~~~di~~gD 493 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLK-RFKDDVKEVRKGQECGIAIENYRDIKEGD 493 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeee-ccCccHhHhccCcEEEEEecCcccCCCCC
Confidence 345566666677 9999999999999999999998766543224444333 45778999999999986 445 789999
Q ss_pred eEe
Q psy12559 338 TFV 340 (610)
Q Consensus 338 tl~ 340 (610)
+|-
T Consensus 494 ~le 496 (509)
T COG0532 494 ILE 496 (509)
T ss_pred EEE
Confidence 986
No 447
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.45 E-value=1.5 Score=47.01 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=53.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC----CcchhhHHHHHHHHh------cCCCeEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQSQTLTVNRQMKR------YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~----Gv~~qt~~v~~~~~~------~~ip~i~~iNKiDr~~~ 93 (610)
+.|-+.|||||... ...+..|+..+|.+|+.+.+.. |. .+....++...+ .+...-+++|+.|.-..
T Consensus 233 ~~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~~~s~~g~-~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~ 309 (388)
T PRK13705 233 HDYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAELFDYTSA-LQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNG 309 (388)
T ss_pred ccCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCcHHHHHHH-HHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCc
Confidence 46889999999874 4568889999999999887642 21 122222222222 12222378999996543
Q ss_pred CHHH-HHHHHHHHhCCCe
Q psy12559 94 DPYR-VINQMRQKVGHNA 110 (610)
Q Consensus 94 ~~~~-~~~~i~~~l~~~~ 110 (610)
...+ ..+.+++.++...
T Consensus 310 ~~~~~~~~~l~~~~~~~v 327 (388)
T PRK13705 310 SQSPWMEEQIRDAWGSMV 327 (388)
T ss_pred hHHHHHHHHHHHHhcccc
Confidence 3334 6688888887543
No 448
>PRK10037 cell division protein; Provisional
Probab=89.19 E-value=1.2 Score=44.50 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=42.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc-CCCeEEEEeccc
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPCIAFINKLD 89 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~-~ip~i~~iNKiD 89 (610)
++|.+.|||||+..+ ..+..++..+|.+|+++.... ...++..++. +....+++|+.+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 478999999999865 468899999999999998742 2234444332 334557789886
No 449
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=89.02 E-value=1.8 Score=44.17 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=59.4
Q ss_pred HHhcceeecceeEEEecC--eeEEEecCCCCcCcHHH--------------HHHHH-------------hhcCEEEEEEe
Q psy12559 8 RQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVE--------------VERAL-------------RVLDGAILVLC 58 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~e--------------v~~al-------------~~~D~ailVvD 58 (610)
..+..+|......+.-++ ..+++|||||+-|.... -...+ ...|++|..|+
T Consensus 43 ~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 43 ISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp --SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred cccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 345556665555544343 47899999998763221 01111 12589999999
Q ss_pred cC-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC-HHHHHHHHHHHhC
Q psy12559 59 AV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVG 107 (610)
Q Consensus 59 a~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~-~~~~~~~i~~~l~ 107 (610)
++ .|+.+.....++.+.+ .+++|-+|.|.|.+..+ ....-..|++.|.
T Consensus 123 pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 123 PTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHHHHHHHHHHHH
Confidence 86 6888888888887765 58899999999987422 2223455555554
No 450
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.01 E-value=1.1 Score=45.29 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=47.3
Q ss_pred cCeeEEEecCCCCcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHH---H-HhcCCCeEEEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQ---M-KRYDVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~---~-~~~~ip~i~~iNKiDr~~~~~~~~ 98 (610)
++|.+.||||||+....+- ...++..+|.+|+++.+..---.....+++. + ...+++...+|+.+-+ .....+.
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~-~~~~~~~ 193 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN-TDREDEL 193 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC-ChhHHHH
Confidence 4689999999997532111 1123447999999998754111112222222 2 2346676544443322 2223466
Q ss_pred HHHHHHHhCCCe
Q psy12559 99 INQMRQKVGHNA 110 (610)
Q Consensus 99 ~~~i~~~l~~~~ 110 (610)
++.+++.++...
T Consensus 194 ~~~l~~~~g~~v 205 (270)
T cd02040 194 IDAFAKRLGTQM 205 (270)
T ss_pred HHHHHHHcCCCe
Confidence 778888887643
No 451
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=88.85 E-value=2 Score=34.86 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=37.4
Q ss_pred EEEecCC-CCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecc
Q psy12559 28 INIIDTP-GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 88 (610)
Q Consensus 28 inlIDTP-Gh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKi 88 (610)
+.+||+| |-.|-.-.+...+. .|++|+|--..+=-..-.++..+.+++.++|++-+|-=|
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENM 63 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENM 63 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT
T ss_pred EEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 5789996 66676656666666 688888776555444556888899999999999444333
No 452
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=88.58 E-value=1.2 Score=41.45 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=37.7
Q ss_pred cCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEe
Q psy12559 24 KDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFIN 86 (610)
Q Consensus 24 ~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iN 86 (610)
+++.+.+||+||+.. ...++.+ ...+.+|+|++...|--..+....+.+++.+++++ +++|
T Consensus 98 ~~~D~viid~~g~~~~~~~~~~~~~dl~~--~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVPITEEYTTADLIK--LLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred hcCCEEEEEcCCccccCCCCCCcHHHHHH--HhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 456778888887521 1222222 33566777777766666666666677777777775 5554
No 453
>KOG3886|consensus
Probab=88.37 E-value=1.2 Score=43.43 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=63.7
Q ss_pred HhcceeecceeEEEe-cCeeEEEecCCCCcCcHHHHHH-----HHhhcCEEEEEEecCCCcch----hhHHHHHHHHhc-
Q psy12559 9 QRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVER-----ALRVLDGAILVLCAVGGVQS----QTLTVNRQMKRY- 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~-~~~~inlIDTPGh~dF~~ev~~-----al~~~D~ailVvDa~~Gv~~----qt~~v~~~~~~~- 77 (610)
.-|-||+....++.+ ++..+|++|+.|...|+..-.+ .++..+..+.|.|+..--.. .++..+++..+.
T Consensus 35 rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S 114 (295)
T KOG3886|consen 35 RLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS 114 (295)
T ss_pred ccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC
Confidence 346666666666654 3478899999999888765444 56788999999998754222 233344444332
Q ss_pred -CCCeEEEEecccCCCCCHHHHHHHHH
Q psy12559 78 -DVPCIAFINKLDRLGADPYRVINQMR 103 (610)
Q Consensus 78 -~ip~i~~iNKiDr~~~~~~~~~~~i~ 103 (610)
..++++++.|||....+..+.+-+.+
T Consensus 115 P~AkiF~l~hKmDLv~~d~r~~if~~r 141 (295)
T KOG3886|consen 115 PEAKIFCLLHKMDLVQEDARELIFQRR 141 (295)
T ss_pred CcceEEEEEeechhcccchHHHHHHHH
Confidence 34567899999999877666544443
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.34 E-value=1.1 Score=37.95 Aligned_cols=45 Identities=18% Similarity=0.084 Sum_probs=33.2
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR 72 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~ 72 (610)
+.+.+||||+..+- ....++..+|.+++++++...-...+..+++
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 67899999997653 4558999999999999986543344444444
No 455
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.28 E-value=1.6 Score=48.16 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=45.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHH---HHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVER---ALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~---al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~ 98 (610)
.++.+.||||||.......... .++ ..+..++|+++..+..... .+++..... .+.-+++||+|.. ..+..+
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt-~~lG~a 503 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET-GRFGSA 503 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc-cchhHH
Confidence 4688999999997544333211 111 1245688999887544333 234433332 3566999999984 345555
Q ss_pred HHHH
Q psy12559 99 INQM 102 (610)
Q Consensus 99 ~~~i 102 (610)
+.-+
T Consensus 504 Lsv~ 507 (559)
T PRK12727 504 LSVV 507 (559)
T ss_pred HHHH
Confidence 5444
No 456
>KOG0467|consensus
Probab=88.15 E-value=0.3 Score=54.84 Aligned_cols=69 Identities=19% Similarity=0.408 Sum_probs=62.8
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc-CCeeE
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVV 609 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~-~~~~~ 609 (610)
..|++..++++..+.+.+++...++.+...||...++.+ ++++..+...||+|||-+...|++ | ++++.
T Consensus 468 ~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~-~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~ 537 (887)
T KOG0467|consen 468 ITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVE-ENGEHVLVTAGEVHLERCLKDLKE-FAKIEIS 537 (887)
T ss_pred eeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHh-hccceeeeeccHHHHHHHHHHHhh-hhceEEE
Confidence 458999999999999999999999999999999999987 689999999999999999999999 7 56553
No 457
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=88.11 E-value=1.6 Score=43.89 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=56.8
Q ss_pred ecCeeEEEecCCC--CcC-cHH--HH----HHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccC
Q psy12559 23 WKDHNINIIDTPG--HVD-FTV--EV----ERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDR 90 (610)
Q Consensus 23 ~~~~~inlIDTPG--h~d-F~~--ev----~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr 90 (610)
+..|.+.++|||. |.- +.. ++ ...+. ..+++++|+....-....+++.++.+.+.++|+ -+|+||+.-
T Consensus 122 ~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 122 EAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred cCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 4478999999986 321 111 11 11122 235889999887777778899999999999998 499999876
Q ss_pred CCC---CH--------HHHHHHHHHHhCC
Q psy12559 91 LGA---DP--------YRVINQMRQKVGH 108 (610)
Q Consensus 91 ~~~---~~--------~~~~~~i~~~l~~ 108 (610)
... ++ .+.++++++.++.
T Consensus 202 ~~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 230 (254)
T cd00550 202 EDVTNCPFLEARREIQQKYLEEIEELFSD 230 (254)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 432 11 2345666666653
No 458
>COG1161 Predicted GTPases [General function prediction only]
Probab=87.73 E-value=0.71 Score=48.15 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=51.1
Q ss_pred EecCCCCc-CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 30 IIDTPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 30 lIDTPGh~-dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
+-+-|||. ++..++..-+..+|.++-|+||.....++...+-+.+. +.|.++++||.|+..
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~ 75 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAP 75 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCC
Confidence 44569996 57778999999999999999999998888888877766 456699999999874
No 459
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=87.35 E-value=5.2 Score=45.34 Aligned_cols=75 Identities=17% Similarity=0.126 Sum_probs=44.9
Q ss_pred eeEEEecCeeEEEecCCCCcCcH------HHHHH----HHh--hcCEEEEEEecCC-CcchhhHHHHHHHHh-cC----C
Q psy12559 18 ATYTLWKDHNINIIDTPGHVDFT------VEVER----ALR--VLDGAILVLCAVG-GVQSQTLTVNRQMKR-YD----V 79 (610)
Q Consensus 18 ~~~~~~~~~~inlIDTPGh~dF~------~ev~~----al~--~~D~ailVvDa~~-Gv~~qt~~v~~~~~~-~~----i 79 (610)
.+...+.+..+++|||||..|.. .++.. .+. ..|++|+|+.... ....+...+++.+.+ +| -
T Consensus 158 ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk 237 (763)
T TIGR00993 158 EIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWF 237 (763)
T ss_pred EEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHc
Confidence 33445788999999999988752 23222 333 3688777765432 122233345554432 22 3
Q ss_pred CeEEEEecccCCC
Q psy12559 80 PCIAFINKLDRLG 92 (610)
Q Consensus 80 p~i~~iNKiDr~~ 92 (610)
-.||+.+..|...
T Consensus 238 ~tIVVFThgD~lp 250 (763)
T TIGR00993 238 NAIVTLTHAASAP 250 (763)
T ss_pred CEEEEEeCCccCC
Confidence 4689999999874
No 460
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=87.14 E-value=0.69 Score=49.03 Aligned_cols=61 Identities=18% Similarity=0.437 Sum_probs=49.1
Q ss_pred cccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 549 AVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 549 a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
.+++-...++.++|+++++|-.+= +.....++..++-..|.+|.|++..||+.+||+++.|
T Consensus 402 ~kd~~K~Kql~Kgl~QL~eEGavQ-~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~~ 462 (528)
T COG4108 402 LKDPLKQKQLKKGLEQLAEEGAVQ-VFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAVF 462 (528)
T ss_pred cCChHHHHHHHHHHHHHhhcCeeE-EEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEEE
Confidence 343334566899999999987665 4455567888888899999999999999999999864
No 461
>KOG2485|consensus
Probab=87.09 E-value=1.6 Score=44.39 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=54.2
Q ss_pred CeeEEEecCCCCcC-cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCHHHHHHHH
Q psy12559 25 DHNINIIDTPGHVD-FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADPYRVINQM 102 (610)
Q Consensus 25 ~~~inlIDTPGh~d-F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~~~~~~~i 102 (610)
.+.-+.-+=|||.- =......-++.+|.+|=|=||.-...+.-+-.-+++. ..|+|+|.||||+.+ .....+++.+
T Consensus 21 ~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~~~~k~~iq~~ 98 (335)
T KOG2485|consen 21 KYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADPKEQKKIIQYL 98 (335)
T ss_pred ccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCchhhhHHHHHH
Confidence 34455667788822 1112233344689999999999888777776666665 789999999999987 4455566666
Q ss_pred HHH
Q psy12559 103 RQK 105 (610)
Q Consensus 103 ~~~ 105 (610)
+.+
T Consensus 99 ~~~ 101 (335)
T KOG2485|consen 99 EWQ 101 (335)
T ss_pred Hhh
Confidence 554
No 462
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.02 E-value=1.5 Score=44.35 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred CeeEEEecCCCCcCcHHH----HHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVE----VERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e----v~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~ 92 (610)
++.+.||||||..-...+ +..-++. .|-.+||+||+.+- .+...++++... +++ =++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCC--CCCCEEEEEeecCCC
Confidence 578999999998754333 3333332 36689999987532 122223333332 333 38899999763
No 463
>KOG0096|consensus
Probab=86.87 E-value=0.76 Score=43.26 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=50.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-H-HHH-hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-R-QMK-RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~-~~~-~~~ip~i~~iNKiDr~ 91 (610)
..++|.+||.|...|.+---...-..-+|++..|...-++-+...-| + .++ ..|+|+++.-||.|..
T Consensus 58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 37999999999988876544444456789999999887766654434 2 222 4679999999999975
No 464
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.84 E-value=1.8 Score=43.44 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=55.0
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH---HHHHHhcC----CCeEEEEecccCCCCCH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV---NRQMKRYD----VPCIAFINKLDRLGADP 95 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v---~~~~~~~~----ip~i~~iNKiDr~~~~~ 95 (610)
+++|.+.+||||++. ...+..|+..+|.+++-+-+..---..+..+ +....+.+ .+..+++|+.|......
T Consensus 117 ~~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (259)
T COG1192 117 KDDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLA 194 (259)
T ss_pred ccCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchH
Confidence 457899999999987 4568899999996665554432111112222 22222212 22348889999887778
Q ss_pred HHHHHHHHHHhC
Q psy12559 96 YRVINQMRQKVG 107 (610)
Q Consensus 96 ~~~~~~i~~~l~ 107 (610)
.+.++.+++.++
T Consensus 195 ~~~~~~~~~~~~ 206 (259)
T COG1192 195 DEVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHHhc
Confidence 888888888877
No 465
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=86.74 E-value=2.1 Score=41.55 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=42.1
Q ss_pred eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEe
Q psy12559 27 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFIN 86 (610)
Q Consensus 27 ~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iN 86 (610)
.+.+||||.-.+. .....-++.+|.+|+|+....--.......++.++ +.+.+ +++|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6999999976653 34444567899999999988766666777777776 56666 6665
No 466
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=86.54 E-value=4.8 Score=42.67 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=39.0
Q ss_pred eEEEecCCCC--cCcHHHHHH---HHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccC
Q psy12559 27 NINIIDTPGH--VDFTVEVER---ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 27 ~inlIDTPGh--~dF~~ev~~---al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
.+.|+|.||. .+|..+-+- .+...|..|++.+ +-.......+++.+.++++|..+|-+|+|.
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 6999999995 455544322 3667798766654 345666778889999999999999999995
No 467
>KOG3022|consensus
Probab=86.49 E-value=0.69 Score=46.22 Aligned_cols=69 Identities=23% Similarity=0.379 Sum_probs=45.5
Q ss_pred EEecCeeEEEecCC-CCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHhcCCCeEEEEecccC
Q psy12559 21 TLWKDHNINIIDTP-GHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 21 ~~~~~~~inlIDTP-Gh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
..|++-.+.+|||| |-.|=.-.+...++..||||+|-=. ..+..| .++-+..+++.++|++=+|--|=+
T Consensus 152 vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTP-Q~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~ 222 (300)
T KOG3022|consen 152 VDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTP-QEVALQDVRKEIDFCRKAGIPILGVVENMSG 222 (300)
T ss_pred CCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCc-hhhhhHHHHhhhhhhhhcCCceEEEEecccc
Confidence 45778889999998 5555444556666777999877522 222222 255678889999999954444443
No 468
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.48 E-value=1.2 Score=47.14 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=39.2
Q ss_pred CeeEEEecCCCCcCcHH----HHHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhc-CCCe-EEEEecccCCCCCHH
Q psy12559 25 DHNINIIDTPGHVDFTV----EVERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRY-DVPC-IAFINKLDRLGADPY 96 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~----ev~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~-~ip~-i~~iNKiDr~~~~~~ 96 (610)
++.+.||||||+..... ++...+.. .|..++|+++. ...+. +.+.+..+ .+++ -++++|+|-. +.+.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d--~~~i~~~f~~l~i~glI~TKLDET-~~~G 359 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSAD--VMTILPKLAEIPIDGFIITKMDET-TRIG 359 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHH--HHHHHHhcCcCCCCEEEEEcccCC-CCcc
Confidence 57899999999854433 33333332 26667777763 22222 22222222 2333 4789999975 3444
Q ss_pred HHHH
Q psy12559 97 RVIN 100 (610)
Q Consensus 97 ~~~~ 100 (610)
.++.
T Consensus 360 ~~Ls 363 (407)
T PRK12726 360 DLYT 363 (407)
T ss_pred HHHH
Confidence 4443
No 469
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.47 E-value=1.5 Score=46.67 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=39.0
Q ss_pred CeeEEEecCCCCcCc----HHHHHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDF----TVEVERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF----~~ev~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~ 91 (610)
++.+.||||||.... ..+..+.++. .|..+||+||+.+-. ....+++.... +++ =++++|+|-.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~--~~idglI~TKLDET 390 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKD--IHIDGIVFTKFDET 390 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcC--CCCCEEEEEcccCC
Confidence 468999999997554 3344444432 477899999864321 11333333332 333 4889999975
No 470
>KOG3883|consensus
Probab=86.17 E-value=1.3 Score=40.17 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=50.3
Q ss_pred eeEEEecCCCCcCcHHHHH-HHHhhcCEEEEEEecCCCcchhhHHHHHH-HH----hcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVE-RALRVLDGAILVLCAVGGVQSQTLTVNRQ-MK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~-~al~~~D~ailVvDa~~Gv~~qt~~v~~~-~~----~~~ip~i~~iNKiDr~ 91 (610)
..+.|-||.|..+.-.|.- ..+..+|+-+||.|..+--.-|-..+++. +. +..+|+++.-||.||.
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 4788999999999855544 45678899999999987666665555532 22 3458999999999996
No 471
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.00 E-value=1.5 Score=51.49 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=50.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
+.|.+.+||||...... .+..-+..+|++|+|+....--..+....++.+...+.+++ +|+|++|..
T Consensus 654 ~~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred hhCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 45889999999986543 33334457999999988654445567778888888888875 999999854
No 472
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=85.93 E-value=7.6 Score=39.34 Aligned_cols=84 Identities=11% Similarity=-0.004 Sum_probs=47.9
Q ss_pred cCeeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhhHHH---HHHHH-hcCCCeE-EEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLTV---NRQMK-RYDVPCI-AFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt~~v---~~~~~-~~~ip~i-~~iNKiDr~~~~~~~ 97 (610)
++|-+.||||||..-... -...++..+|.+|+++....---.....+ ++..+ ..+++.. +++||... ....+
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~--~~~~e 193 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAANNICKGILKYADAGGVRLGGLICNSRKV--DNERE 193 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCCC--CchHH
Confidence 568999999998642111 11223458999999997643211122233 33332 2455553 77897431 12456
Q ss_pred HHHHHHHHhCCC
Q psy12559 98 VINQMRQKVGHN 109 (610)
Q Consensus 98 ~~~~i~~~l~~~ 109 (610)
.++.+++.++..
T Consensus 194 ~~~~l~~~~~~~ 205 (274)
T PRK13235 194 MIEELARKIGTQ 205 (274)
T ss_pred HHHHHHHHcCCc
Confidence 777888877753
No 473
>KOG1534|consensus
Probab=85.85 E-value=6.8 Score=37.80 Aligned_cols=67 Identities=25% Similarity=0.339 Sum_probs=46.1
Q ss_pred eeEEEecCCC------CcCcHHHHHHHHhhcC---EEEEEEecCCCc-----chhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPG------HVDFTVEVERALRVLD---GAILVLCAVGGV-----QSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPG------h~dF~~ev~~al~~~D---~ailVvDa~~Gv-----~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
-.+.++|||| |..-.....+.|..-+ +++.++|+.==+ -+.-...+.......+|.|=++.|||++
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 3578999999 6667778888887754 577777764211 1122233344456789999999999988
Q ss_pred C
Q psy12559 92 G 92 (610)
Q Consensus 92 ~ 92 (610)
.
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 4
No 474
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=85.45 E-value=1.6 Score=44.31 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=50.0
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHh------hcCEEEEEEecCC----CcchhhHHHHHHHHhcCCCeE-EEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALR------VLDGAILVLCAVG----GVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~------~~D~ailVvDa~~----Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~ 92 (610)
+.|-+.||||+|.. +..++. .+|.+|+++.... |+..-.+.+.+.....+++.+ +++|+.. .
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~ 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN--V 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--C
Confidence 46889999998843 233444 7999999998752 222112222343445677765 8899642 1
Q ss_pred CCHHHHHHHHHHHhCCCee
Q psy12559 93 ADPYRVINQMRQKVGHNAA 111 (610)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~~ 111 (610)
....+.++++++.++....
T Consensus 190 ~~~~~~~e~l~~~~~~~~l 208 (275)
T PRK13233 190 DGELELLEEFTDAIGTQMI 208 (275)
T ss_pred CcHHHHHHHHHHHcCCcee
Confidence 2235678888888876443
No 475
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=85.28 E-value=5.2 Score=45.31 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred EEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC----CcccCceEec
Q psy12559 268 LEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV----DCASGDTFVT 341 (610)
Q Consensus 268 ~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl----~~~~Gdtl~~ 341 (610)
++..+.+.++-+||.+|+|++|..|... .+. .+++|-.+. +...+|++|.+|+=|+| .|. +.+.||+|.+
T Consensus 474 vf~~~~~~i~G~~V~~G~i~~~~~v~r~-~~~--~iG~i~slk-~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 474 VFRQSKPAIVGVEVLTGVIRQGYPLMKD-DGE--TVGTVRSMQ-DKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeCCCCeEEEEEEecCEEecCCeEEec-CCE--EEEEEchhc-ccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 3334447899999999999999987542 222 234443333 44678999999999986 343 6788999983
No 476
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=84.91 E-value=2.6 Score=42.42 Aligned_cols=87 Identities=14% Similarity=0.049 Sum_probs=51.6
Q ss_pred ecCeeEEEecCCCCcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHHHHH
Q psy12559 23 WKDHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVIN 100 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~~~~ 100 (610)
+++|.+.||||||+..-.+- ...++..+|.+|+++....---.....+.+.+...+.+.. ++.|..+.. ...+.++
T Consensus 111 ~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~--~~~~~~~ 188 (264)
T PRK13231 111 DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGID--NEVEIVS 188 (264)
T ss_pred cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCc--cHHHHHH
Confidence 45789999999987532111 0111268999999987754222334445555555554543 555655532 2456778
Q ss_pred HHHHHhCCCee
Q psy12559 101 QMRQKVGHNAA 111 (610)
Q Consensus 101 ~i~~~l~~~~~ 111 (610)
++++.++.+..
T Consensus 189 ~l~~~~~~~vl 199 (264)
T PRK13231 189 EFASRIGSRII 199 (264)
T ss_pred HHHHHhCCCeE
Confidence 88887776543
No 477
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.35 E-value=2.4 Score=49.40 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=49.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
.|.+.+||||....... .....+.+|+.|+|+....--..+....++.+.+.+++++ +|+|++|.-
T Consensus 640 ~yD~IIIDtPP~~~~~D-a~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred cCCEEEEeCCCccccch-HHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcccC
Confidence 57899999998665543 3334478899999987654444566677788888899987 999999854
No 478
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=84.22 E-value=6 Score=39.93 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=53.0
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE---EEEecccCCCCCHHHHHHHH
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI---AFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i---~~iNKiDr~~~~~~~~~~~i 102 (610)
+.+.|||||+- ...++..++..+|..|+|....----..+....+.+.+.+.+.. +++|+++.. .+..+....+
T Consensus 113 ~D~iliD~~aG--l~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~-~e~~~~~~~~ 189 (262)
T COG0455 113 YDYILIDTGAG--LSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRST-KEGVDVAALL 189 (262)
T ss_pred CCEEEEeCCCC--ccHHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecccc-cchhHHHHHH
Confidence 47999999985 44567778888899999887643222345667788888888863 899999833 3334444444
Q ss_pred HHHh
Q psy12559 103 RQKV 106 (610)
Q Consensus 103 ~~~l 106 (610)
.+..
T Consensus 190 ~~~~ 193 (262)
T COG0455 190 IQVV 193 (262)
T ss_pred HHHH
Confidence 4433
No 479
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.25 E-value=2.1 Score=44.19 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=49.0
Q ss_pred cCeeEEEecCCC----CcCcHHHHHHHHhhc---CE-----EEEEEecCCCcchhhHHHHHHHHhcC--CCe-EEEEecc
Q psy12559 24 KDHNINIIDTPG----HVDFTVEVERALRVL---DG-----AILVLCAVGGVQSQTLTVNRQMKRYD--VPC-IAFINKL 88 (610)
Q Consensus 24 ~~~~inlIDTPG----h~dF~~ev~~al~~~---D~-----ailVvDa~~Gv~~qt~~v~~~~~~~~--ip~-i~~iNKi 88 (610)
+++-+.||||.| +.+.+.|...--|++ +. .++|+||.-|=. -+.||+.++ +++ =++++|+
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIlTKl 294 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIILTKL 294 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEEEec
Confidence 467899999999 356777766555554 44 778889998732 344555432 444 4889999
Q ss_pred cCCCCCHHHHHHHHHHHhCC
Q psy12559 89 DRLGADPYRVINQMRQKVGH 108 (610)
Q Consensus 89 Dr~~~~~~~~~~~i~~~l~~ 108 (610)
|-. ...-++-.|...++.
T Consensus 295 Dgt--AKGG~il~I~~~l~~ 312 (340)
T COG0552 295 DGT--AKGGIILSIAYELGI 312 (340)
T ss_pred ccC--CCcceeeeHHHHhCC
Confidence 932 222334444444443
No 480
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=82.11 E-value=3.4 Score=41.89 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=48.1
Q ss_pred CeeEEEecCCCCcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHH---HH-HhcCCCeE-EEEecccCCCCCHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNR---QM-KRYDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~---~~-~~~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
.|.+.||||||+.-...- ...++..+|.+|+++.+..---.....+++ .+ ...+++.. ++.|+- ......+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~--~~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSR--NVDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCC--CCchHHHH
Confidence 589999999996521110 112345789999999876422223333332 22 23466665 455642 22334556
Q ss_pred HHHHHHHhCCCe
Q psy12559 99 INQMRQKVGHNA 110 (610)
Q Consensus 99 ~~~i~~~l~~~~ 110 (610)
.+.+++.++...
T Consensus 193 ~e~l~~~~~~~v 204 (275)
T TIGR01287 193 IDEFAKKLGTQL 204 (275)
T ss_pred HHHHHHHhCCce
Confidence 778888777643
No 481
>PRK04004 translation initiation factor IF-2; Validated
Probab=82.01 E-value=5.5 Score=45.15 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=48.9
Q ss_pred EEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC----CcccCceEe
Q psy12559 268 LEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV----DCASGDTFV 340 (610)
Q Consensus 268 ~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl----~~~~Gdtl~ 340 (610)
++..+.+.++-+||.+|+|++|..|... .|. .+++|-.+. +...+|+++.+|+=|+| .+. +.+.||+|-
T Consensus 476 vf~~~~~~IaGc~V~~G~i~~~~~v~r~-~g~--~iG~i~Slk-~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~ 550 (586)
T PRK04004 476 VFRQSDPAIVGVEVLGGTIKPGVPLIKE-DGK--RVGTIKQIQ-DQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILY 550 (586)
T ss_pred eEecCCCeEEEEEEEeCEEecCCEEEEE-CCE--EEEEEehhh-ccCCcccEeCCCCEEEEEEecccccCCCCCCCEEE
Confidence 4444457899999999999999986542 332 234444443 44678999999999986 343 567788876
No 482
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.81 E-value=3.9 Score=41.40 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=52.2
Q ss_pred EecCeeEEEecCCCC-cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 22 LWKDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh-~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
.|+++.+.+||||=- .|- .....-+..|++|+|.-..+-.....++....+++.++|++ ++.|+.+..
T Consensus 163 ~~~~~D~vIID~PP~~g~~--d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 163 LWGEYDYVIIDTPPGTGDA--DATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred hccCCCEEEEeCCCCchHH--HHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCc
Confidence 467799999999843 222 22333456789999988777777778889999999999998 999987765
No 483
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=80.75 E-value=4.5 Score=41.12 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=49.8
Q ss_pred cCeeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhhH---HHHHHHHh-cCCCeEEEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTL---TVNRQMKR-YDVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt~---~v~~~~~~-~~ip~i~~iNKiDr~~~~~~~~ 98 (610)
.+|.+.||||||..-... .+..++..+|.+|+++....---.... ..++...+ .+.++..++|..... .+..+.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~-~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRSV-IDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccCC-CchhHH
Confidence 468999999998542211 123356679999999988642222222 33333332 355554445443222 222467
Q ss_pred HHHHHHHhCCCee
Q psy12559 99 INQMRQKVGHNAA 111 (610)
Q Consensus 99 ~~~i~~~l~~~~~ 111 (610)
++.+++.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7888888876544
No 484
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=80.40 E-value=3.7 Score=42.86 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=50.2
Q ss_pred EEecCeeEEEecCCCCc---CcHHHHHHHHhhcCEEEEEEecCCCcchh-----hHHHHHHHHhcC--CCeE-EEEeccc
Q psy12559 21 TLWKDHNINIIDTPGHV---DFTVEVERALRVLDGAILVLCAVGGVQSQ-----TLTVNRQMKRYD--VPCI-AFINKLD 89 (610)
Q Consensus 21 ~~~~~~~inlIDTPGh~---dF~~ev~~al~~~D~ailVvDa~~Gv~~q-----t~~v~~~~~~~~--ip~i-~~iNKiD 89 (610)
+.| ++.|.||||+|.. .|..-+.+ ..+|-+|+|.. ..+.+- +.+.++.+++.+ ++.+ +++||.|
T Consensus 144 ~~w-~~DyVliD~~gdv~~ggf~l~i~~--~~ad~VIVVt~--pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d 218 (329)
T cd02033 144 HDW-DFDYVLLDFLGDVVCGGFGLPIAR--DMAQKVIVVGS--NDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDD 218 (329)
T ss_pred ccc-cCCEEEEecCCcceeccccchhhh--cCCceEEEeCC--chHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcC
Confidence 467 7899999999965 35433332 34666555543 333322 345556666664 5554 9999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCeeEeecc
Q psy12559 90 RLGADPYRVINQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 90 r~~~~~~~~~~~i~~~l~~~~~~~~~p 116 (610)
..+ ..+.+.+.++... .-.+|
T Consensus 219 ~~~-----~ie~~ae~lgi~v-Lg~IP 239 (329)
T cd02033 219 GTG-----EAQAFAAHAGIPI-LAAIP 239 (329)
T ss_pred Ccc-----hHHHHHHHhCCCE-EEECC
Confidence 532 2556666676543 33455
No 485
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.11 E-value=4.5 Score=43.29 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=42.2
Q ss_pred cCeeEEEecCCCCcCc----HHHHHHHHhhc--C-EEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDF----TVEVERALRVL--D-GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~ev~~al~~~--D-~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+++.+.||||||..-. ..++..-+..+ + -.+||+||+.|-.... .+++.....+ +.=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 4688999999996532 23555555543 3 5889999998843333 4444433222 234789999964
No 486
>KOG0099|consensus
Probab=79.90 E-value=4 Score=40.47 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=65.6
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc------hhh---------HHHHH
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ------SQT---------LTVNR 72 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~------~qt---------~~v~~ 72 (610)
|-|-+|-....+.|......+...|..|..|=....+.+...+-++|+|+.+++--+ .|. +.+|.
T Consensus 184 rcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWn 263 (379)
T KOG0099|consen 184 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWN 263 (379)
T ss_pred HhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHh
Confidence 347777777778888888899999999999999999999999999999999876321 111 23454
Q ss_pred HHHhcCCCeEEEEecccCC
Q psy12559 73 QMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 73 ~~~~~~ip~i~~iNKiDr~ 91 (610)
.-+-.-+.+|+|+||-|.+
T Consensus 264 NRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 264 NRWLRTISVILFLNKQDLL 282 (379)
T ss_pred hhHHhhhheeEEecHHHHH
Confidence 4444568899999999986
No 487
>PRK11519 tyrosine kinase; Provisional
Probab=79.89 E-value=5.1 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=50.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
.|.+.|||||--... .+...-.+.+|++|+|+-...--..+....++.....+.+.+ +++|+++..
T Consensus 635 ~yD~ViiDtpP~~~v-~Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 635 NYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred cCCEEEEeCCCcccc-hHHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 588999999976543 355556688999999998654344455566777778899998 999999754
No 488
>KOG0410|consensus
Probab=79.48 E-value=6.4 Score=40.46 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=47.1
Q ss_pred cCeeEEEecCCCCc-CcHHHHHHHH-------hhcCEEEEEEecCCC-cchhhHHHHHHHHhcCCCe-------EEEEec
Q psy12559 24 KDHNINIIDTPGHV-DFTVEVERAL-------RVLDGAILVLCAVGG-VQSQTLTVNRQMKRYDVPC-------IAFINK 87 (610)
Q Consensus 24 ~~~~inlIDTPGh~-dF~~ev~~al-------~~~D~ailVvDa~~G-v~~qt~~v~~~~~~~~ip~-------i~~iNK 87 (610)
.+..+.|.||-|+. |.-.....|+ .-+|..+=|+|.+.. .+.|-+.++.-++..++|. |=|=||
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnk 303 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNK 303 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccc
Confidence 36789999999963 3222333333 357999999999875 4778889999888888872 334555
Q ss_pred ccCC
Q psy12559 88 LDRL 91 (610)
Q Consensus 88 iDr~ 91 (610)
+|..
T Consensus 304 iD~e 307 (410)
T KOG0410|consen 304 IDYE 307 (410)
T ss_pred cccc
Confidence 5543
No 489
>KOG2423|consensus
Probab=78.32 E-value=3.7 Score=43.12 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC--CCeEEEEecccCCC
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD--VPCIAFINKLDRLG 92 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~--ip~i~~iNKiDr~~ 92 (610)
.|.+..+..+|.+|=|+||.+........+-+.++++. .-.|+++||+|+.-
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeecccccc
Confidence 36777788899999999999998888888888777642 34589999999974
No 490
>KOG1424|consensus
Probab=78.04 E-value=6.3 Score=42.92 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=49.7
Q ss_pred CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh--cCCCeEEEEecccCCCCCHHHHHHHHHHHhCCC
Q psy12559 38 DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR--YDVPCIAFINKLDRLGADPYRVINQMRQKVGHN 109 (610)
Q Consensus 38 dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~--~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~ 109 (610)
|+=.+.-|.+.-+|.+|.+|||....---...+-++++. ..+..++++||.|++- .+.....++.|..+
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~---~~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLP---PEQRVAWAEYFRQN 233 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCC---HHHHHHHHHHHHhc
Confidence 445577788889999999999999886666666666653 2356789999999984 34445555556443
No 491
>KOG0447|consensus
Probab=77.47 E-value=8.6 Score=42.04 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=58.6
Q ss_pred HhcceeecceeEEEecC---eeEEEecCCCCc-----CcHH---H-----HHHHHhhcCEEEEEE-ecCCCc-chhhHHH
Q psy12559 9 QRGITIQSAATYTLWKD---HNINIIDTPGHV-----DFTV---E-----VERALRVLDGAILVL-CAVGGV-QSQTLTV 70 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~---~~inlIDTPGh~-----dF~~---e-----v~~al~~~D~ailVv-Da~~Gv-~~qt~~v 70 (610)
.-|-|+..-.+++..+| .+..|+|.||.. |... + ...-+..-.++|++| |++-.- .+.---+
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDL 471 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDL 471 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHH
Confidence 34889999999999876 578999999953 2211 2 223334446666655 222111 1222335
Q ss_pred HHHHHhcCCCeEEEEecccCCC---CCHHHHH
Q psy12559 71 NRQMKRYDVPCIAFINKLDRLG---ADPYRVI 99 (610)
Q Consensus 71 ~~~~~~~~ip~i~~iNKiDr~~---~~~~~~~ 99 (610)
..++.-.|...|+|++|+|... ++++++-
T Consensus 472 Vsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~ 503 (980)
T KOG0447|consen 472 VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQ 503 (980)
T ss_pred HHhcCCCCCeeEEEEeecchhhhccCCHHHHH
Confidence 6778889999999999999973 5555443
No 492
>PRK13236 nitrogenase reductase; Reviewed
Probab=77.04 E-value=6.4 Score=40.52 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=49.4
Q ss_pred EecCeeEEEecCCCCcCcHH-H--HHHHHhhcCEEEEEEecCCCcch---hh-HHHHHHHHhcCCCeE-EEEecccCCCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTV-E--VERALRVLDGAILVLCAVGGVQS---QT-LTVNRQMKRYDVPCI-AFINKLDRLGA 93 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~-e--v~~al~~~D~ailVvDa~~Gv~~---qt-~~v~~~~~~~~ip~i-~~iNKiDr~~~ 93 (610)
.|+++.+.+|||+| ++.. - ...++..+|.+|+|+....---. ++ +.+.+.....+++.+ +++|+-+..
T Consensus 118 ~~~~yD~vliD~~~--~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~-- 193 (296)
T PRK13236 118 AYQDLDFVSYDVLG--DVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVD-- 193 (296)
T ss_pred ccccCCEEEEeccc--cceeccccccchhccCCEEEEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCc--
Confidence 35788999999985 2211 1 11125689999999876431111 12 233333334567765 778974211
Q ss_pred CHHHHHHHHHHHhCCCe
Q psy12559 94 DPYRVINQMRQKVGHNA 110 (610)
Q Consensus 94 ~~~~~~~~i~~~l~~~~ 110 (610)
+-.++++++++.++...
T Consensus 194 ~~~~ile~l~~~~g~~v 210 (296)
T PRK13236 194 REIELIETLAKRLNTQM 210 (296)
T ss_pred chHHHHHHHHHHhCccc
Confidence 11257889998887554
No 493
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.90 E-value=6.3 Score=42.47 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred cCeeEEEecCCCCcCcHHH----HHHHHhhc-----CEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVE----VERALRVL-----DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 94 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~e----v~~al~~~-----D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~ 94 (610)
.++.+.||||||+.....+ +..-++.. .-.+||+||..|-... ..+++.-...++ .=++++|+|-. +.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~~-~glIlTKLDEt-~~ 374 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLNY-RRILLTKLDEA-DF 374 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCCC-CEEEEEcccCC-CC
Confidence 4678999999998644333 22222222 2578999998874322 333333322222 24789999975 33
Q ss_pred HHHHHH
Q psy12559 95 PYRVIN 100 (610)
Q Consensus 95 ~~~~~~ 100 (610)
+..++.
T Consensus 375 ~G~il~ 380 (432)
T PRK12724 375 LGSFLE 380 (432)
T ss_pred ccHHHH
Confidence 444443
No 494
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=76.89 E-value=4.3 Score=41.78 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=47.0
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH------hhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCeE-EEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL------RVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al------~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~i-~~iNKiDr~~ 92 (610)
++|-+.||||+|- + +..++ ..+|.+|+++....---.....+++.+.+ .+++.. +++|+.. .
T Consensus 118 ~~yD~IlID~~~~--~---~~nal~~~~~~~aAD~vIIPv~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r--t 190 (295)
T PRK13234 118 DDVDYVSYDVLGD--V---VCGGFAMPIRENKAQEIYIVMSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ--T 190 (295)
T ss_pred ccCCEEEEEcCCC--c---eECCCccccccccCceEEEecCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC--C
Confidence 5788999999873 1 11222 37999999998753211122333333332 245554 8899533 2
Q ss_pred CCHHHHHHHHHHHhCCCe
Q psy12559 93 ADPYRVINQMRQKVGHNA 110 (610)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~ 110 (610)
..-.+.++.+++.++...
T Consensus 191 ~~~~~~~e~l~e~~g~~l 208 (295)
T PRK13234 191 DRELELAEALAARLGSKL 208 (295)
T ss_pred chHHHHHHHHHHHhCCce
Confidence 233567888888887643
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.54 E-value=9.6 Score=41.39 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred cCeeEEEecCCCCcCcHH----HHHHHHhh---cCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVDFTV----EVERALRV---LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~----ev~~al~~---~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~ 96 (610)
.++.+.||||||+..+.. ++..-++. -+-..+|+++..+- .....+++.....++ -=++++|+|.. ..+.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet-~~~G 374 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET-SSLG 374 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc-cccc
Confidence 357899999999866542 33333331 23668899987542 223344554443332 24889999984 4444
Q ss_pred HHHHH
Q psy12559 97 RVINQ 101 (610)
Q Consensus 97 ~~~~~ 101 (610)
.++.-
T Consensus 375 ~i~~~ 379 (424)
T PRK05703 375 SILSL 379 (424)
T ss_pred HHHHH
Confidence 44433
No 496
>KOG1486|consensus
Probab=76.13 E-value=2.7 Score=41.48 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=40.4
Q ss_pred EEEecCeeEEEecCCCCcCcH-------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 20 YTLWKDHNINIIDTPGHVDFT-------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 20 ~~~~~~~~inlIDTPGh~dF~-------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
-+.+++..|.++|.||...=. .+|.+..|.+|.+++|+||..+- .|-+.+-+.+..
T Consensus 103 vi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e-~qr~~le~ELe~ 165 (364)
T KOG1486|consen 103 VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE-DQREILEKELEA 165 (364)
T ss_pred eEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch-hHHHHHHHHHHH
Confidence 345789999999999976543 35888889999999999998752 333333334443
No 497
>KOG3887|consensus
Probab=75.39 E-value=3.7 Score=40.27 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=48.7
Q ss_pred eEEEecCCCCcCcHH---HHHHHHhhcCEEEEEEecCCCc-chhhHHHHHHHHhcCC----CeEEEEecccCCCCC
Q psy12559 27 NINIIDTPGHVDFTV---EVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV----PCIAFINKLDRLGAD 94 (610)
Q Consensus 27 ~inlIDTPGh~dF~~---ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~~~~~~i----p~i~~iNKiDr~~~~ 94 (610)
.+..||-||..||.. .-++-.+.+.+.|+||||.+.. ++-|+.+.-.++.+++ ..=+||-|.|-+..+
T Consensus 76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred ceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 467899999998765 3566778899999999998643 4445555555555443 344999999988544
No 498
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=74.76 E-value=27 Score=31.17 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=57.3
Q ss_pred eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHH
Q psy12559 26 HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYR 97 (610)
Q Consensus 26 ~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~ 97 (610)
+.+.+|+.+|..- +..++.+.+.. -+|+|.+...|.-.++....+.++..+++.. ++.|.++.....++.
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~--~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~ 116 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKELNL--PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATL 116 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHhCC--CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhh
Confidence 7899999998532 44455555422 2677888878877778888889999999986 788988865432334
Q ss_pred HHHHHHHHhCCC
Q psy12559 98 VINQMRQKVGHN 109 (610)
Q Consensus 98 ~~~~i~~~l~~~ 109 (610)
.++.+.+.++..
T Consensus 117 ~~~~i~~~~gip 128 (134)
T cd03109 117 NVETIERLTGIP 128 (134)
T ss_pred hHHHHHHhcCCC
Confidence 566677766643
No 499
>KOG2655|consensus
Probab=73.58 E-value=15 Score=38.63 Aligned_cols=103 Identities=19% Similarity=0.308 Sum_probs=67.6
Q ss_pred HhcceeecceeEEEecC--eeEEEecCCCCcCcHHH------------------------HHH-HHh--hcCEEEEEEec
Q psy12559 9 QRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVE------------------------VER-ALR--VLDGAILVLCA 59 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~e------------------------v~~-al~--~~D~ailVvDa 59 (610)
.+..+|.+..+.+.=++ .++|+|||||..|+... ..| ... -+.+++..|..
T Consensus 60 ~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P 139 (366)
T KOG2655|consen 60 KETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISP 139 (366)
T ss_pred cccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCC
Confidence 34555555555555554 46788999999886442 111 111 35789999986
Q ss_pred C-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC-HHHHHHHHHHHhCCCeeE
Q psy12559 60 V-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVGHNAAF 112 (610)
Q Consensus 60 ~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~ 112 (610)
. +|+.+......+.+. .++.+|-+|-|-|.+..+ .......|.+.+....++
T Consensus 140 ~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~ 193 (366)
T KOG2655|consen 140 TGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIK 193 (366)
T ss_pred CCCCCcHhhHHHHHHHh-ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcc
Confidence 5 689999988877655 368889999999988544 233455666666654433
No 500
>KOG4423|consensus
Probab=73.44 E-value=3.1 Score=39.15 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=50.5
Q ss_pred EEecCe---eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH--h----cC--CCeEEEEeccc
Q psy12559 21 TLWKDH---NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK--R----YD--VPCIAFINKLD 89 (610)
Q Consensus 21 ~~~~~~---~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~--~----~~--ip~i~~iNKiD 89 (610)
+.|+++ +..|+|-.|...|..-+.--.+.+-++.+|+|.+...+-.--.-|.+=. + .+ +|+++.-||+|
T Consensus 67 l~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd 146 (229)
T KOG4423|consen 67 LQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCD 146 (229)
T ss_pred hccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhc
Confidence 456654 4579999999988877666678889999999998765444334454322 1 22 45688999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
...
T Consensus 147 ~e~ 149 (229)
T KOG4423|consen 147 QEK 149 (229)
T ss_pred cCh
Confidence 764
Done!