Query psy12559
Match_columns 610
No_of_seqs 390 out of 3187
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:26:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 100.0 7E-119 2E-123 1025.1 47.8 584 1-589 53-652 (709)
2 2rdo_7 EF-G, elongation factor 100.0 2E-114 7E-119 984.0 55.8 583 1-590 50-647 (704)
3 2xex_A Elongation factor G; GT 100.0 2E-112 5E-117 967.6 51.8 583 1-590 50-635 (693)
4 1dar_A EF-G, elongation factor 100.0 4E-113 1E-117 972.0 45.1 582 1-590 52-636 (691)
5 2dy1_A Elongation factor G; tr 100.0 2E-104 6E-109 898.6 47.0 554 1-590 49-606 (665)
6 3j25_A Tetracycline resistance 100.0 1E-109 3E-114 937.3 -2.2 526 1-589 42-568 (638)
7 1n0u_A EF-2, elongation factor 100.0 8E-96 3E-100 846.1 25.3 566 1-590 57-759 (842)
8 3vqt_A RF-3, peptide chain rel 100.0 2.8E-92 9.7E-97 779.9 33.6 437 1-463 75-523 (548)
9 2h5e_A Peptide chain release f 100.0 1.3E-72 4.3E-77 620.6 34.6 415 1-440 57-477 (529)
10 3tr5_A RF-3, peptide chain rel 100.0 2.3E-72 7.8E-77 617.8 34.5 414 2-440 58-476 (528)
11 2ywe_A GTP-binding protein LEP 100.0 1.8E-63 6.1E-68 551.2 29.3 378 1-590 43-438 (600)
12 3cb4_D GTP-binding protein LEP 100.0 1.5E-61 5.1E-66 537.0 28.1 376 1-590 41-434 (599)
13 1g7s_A Translation initiation 100.0 1.8E-33 6.1E-38 312.5 12.6 298 10-381 36-373 (594)
14 2c78_A Elongation factor TU-A; 100.0 1.1E-31 3.7E-36 287.6 22.4 230 1-343 50-307 (405)
15 1d2e_A Elongation factor TU (E 100.0 9.9E-32 3.4E-36 286.9 17.5 227 2-340 42-287 (397)
16 3j2k_7 ERF3, eukaryotic polype 100.0 1.5E-30 5.1E-35 280.9 25.0 233 1-345 70-328 (439)
17 1jny_A EF-1-alpha, elongation 100.0 1E-30 3.5E-35 282.3 19.7 228 1-344 59-317 (435)
18 2elf_A Protein translation elo 100.0 5.2E-30 1.8E-34 270.1 18.2 218 9-340 43-274 (370)
19 3avx_A Elongation factor TS, e 100.0 1.3E-29 4.4E-34 291.6 22.4 231 1-344 334-581 (1289)
20 1r5b_A Eukaryotic peptide chai 100.0 2.9E-29 9.9E-34 273.0 18.9 232 1-344 96-356 (467)
21 3mca_A HBS1, elongation factor 100.0 5.7E-30 1.9E-34 285.4 12.8 228 1-344 230-489 (592)
22 1kk1_A EIF2gamma; initiation o 100.0 9.4E-29 3.2E-33 265.2 21.8 224 1-340 35-313 (410)
23 3p26_A Elongation factor 1 alp 100.0 3.6E-28 1.2E-32 265.8 25.5 237 1-345 86-363 (483)
24 1zun_B Sulfate adenylate trans 100.0 2.1E-28 7.2E-33 264.3 21.1 227 2-340 80-323 (434)
25 1f60_A Elongation factor EEF1A 100.0 4E-28 1.4E-32 263.3 21.9 224 2-340 61-325 (458)
26 1wb1_A Translation elongation 100.0 1E-28 3.6E-33 269.3 9.9 227 1-340 48-281 (482)
27 1s0u_A EIF-2-gamma, translatio 99.9 3.9E-27 1.3E-31 252.4 21.5 226 1-343 33-313 (408)
28 3izq_1 HBS1P, elongation facto 99.9 1.3E-27 4.5E-32 267.0 18.3 241 2-345 221-497 (611)
29 3sjy_A Translation initiation 99.9 5.4E-26 1.9E-30 243.1 19.8 217 8-340 52-305 (403)
30 1zo1_I IF2, translation initia 99.9 2.8E-28 9.6E-33 264.4 1.5 270 9-391 34-334 (501)
31 3izy_P Translation initiation 99.9 1.4E-26 4.9E-31 253.1 3.9 221 7-340 32-256 (537)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.9 1.1E-24 3.7E-29 220.6 2.8 141 327-506 2-152 (332)
33 3qq5_A Small GTP-binding prote 99.5 2.8E-14 9.4E-19 152.1 7.5 88 5-94 61-156 (423)
34 3iev_A GTP-binding protein ERA 99.5 2.6E-13 8.9E-18 139.4 14.2 82 10-91 42-135 (308)
35 1wf3_A GTP-binding protein; GT 99.5 4E-13 1.4E-17 137.4 13.5 81 12-92 41-131 (301)
36 4dcu_A GTP-binding protein ENG 99.4 7.5E-13 2.6E-17 143.5 11.8 84 9-92 226-320 (456)
37 4dhe_A Probable GTP-binding pr 99.4 8.3E-13 2.8E-17 128.5 10.8 83 10-92 62-158 (223)
38 2xtp_A GTPase IMAP family memb 99.4 2.4E-14 8E-19 143.4 -1.0 167 11-183 56-257 (260)
39 2hjg_A GTP-binding protein ENG 99.4 9E-13 3.1E-17 142.0 10.1 85 8-92 205-300 (436)
40 2lkc_A Translation initiation 99.4 1E-12 3.5E-17 122.7 8.1 87 10-96 39-125 (178)
41 1ega_A Protein (GTP-binding pr 99.3 1.8E-12 6E-17 132.7 9.9 73 19-92 49-130 (301)
42 2dyk_A GTP-binding protein; GT 99.3 7.9E-12 2.7E-16 114.5 10.5 85 7-91 30-121 (161)
43 1zj6_A ADP-ribosylation factor 99.3 1.7E-11 5.8E-16 115.7 12.1 80 13-92 47-131 (187)
44 1zd9_A ADP-ribosylation factor 99.3 1.7E-11 5.7E-16 116.0 12.1 81 13-93 54-139 (188)
45 1r8s_A ADP-ribosylation factor 99.3 3.3E-11 1.1E-15 110.7 13.6 80 13-92 31-115 (164)
46 4bas_A ADP-ribosylation factor 99.3 1.9E-11 6.5E-16 116.2 11.5 81 13-93 50-142 (199)
47 1upt_A ARL1, ADP-ribosylation 99.3 1.2E-11 4.2E-16 114.3 9.5 81 13-93 38-123 (171)
48 3t1o_A Gliding protein MGLA; G 99.2 1.4E-11 4.8E-16 116.8 9.7 70 23-92 71-149 (198)
49 2p67_A LAO/AO transport system 99.2 7.8E-13 2.7E-17 137.8 0.7 175 23-227 146-329 (341)
50 3i8s_A Ferrous iron transport 99.2 7.4E-12 2.5E-16 126.3 7.2 80 10-91 34-125 (274)
51 3iby_A Ferrous iron transport 99.2 1.3E-11 4.3E-16 123.3 7.7 80 10-91 32-123 (256)
52 2h57_A ADP-ribosylation factor 99.2 5E-11 1.7E-15 112.8 11.2 81 12-92 53-140 (190)
53 2b6h_A ADP-ribosylation factor 99.2 1E-10 3.4E-15 111.2 13.1 79 14-92 61-144 (192)
54 1mky_A Probable GTP-binding pr 99.2 7.9E-11 2.7E-15 126.9 13.4 84 8-91 31-123 (439)
55 2efe_B Small GTP-binding prote 99.2 9.5E-11 3.3E-15 109.5 12.3 75 18-92 51-131 (181)
56 1svi_A GTP-binding protein YSX 99.2 7.6E-11 2.6E-15 111.7 11.7 68 25-92 68-148 (195)
57 1fzq_A ADP-ribosylation factor 99.2 2.6E-10 9E-15 107.1 15.1 75 19-93 53-132 (181)
58 3o47_A ADP-ribosylation factor 99.2 4.6E-11 1.6E-15 123.7 10.5 81 13-93 196-281 (329)
59 2h17_A ADP-ribosylation factor 99.2 4.7E-11 1.6E-15 112.1 9.7 80 13-92 52-136 (181)
60 3k53_A Ferrous iron transport 99.2 2.9E-11 1E-15 121.7 8.7 81 9-91 33-122 (271)
61 1ksh_A ARF-like protein 2; sma 99.2 3.9E-11 1.3E-15 112.9 9.0 79 14-92 50-133 (186)
62 2x77_A ADP-ribosylation factor 99.2 2.1E-11 7.2E-16 115.2 6.7 81 13-93 53-138 (189)
63 1r2q_A RAS-related protein RAB 99.2 1.1E-10 3.9E-15 107.4 11.3 80 12-91 41-124 (170)
64 1m2o_B GTP-binding protein SAR 99.2 4.7E-11 1.6E-15 113.3 8.6 81 12-92 53-138 (190)
65 2fg5_A RAB-22B, RAS-related pr 99.2 1.2E-10 4.1E-15 110.4 11.1 81 11-91 57-141 (192)
66 2hjg_A GTP-binding protein ENG 99.2 2.2E-11 7.4E-16 131.2 6.5 84 8-91 33-124 (436)
67 1mky_A Probable GTP-binding pr 99.1 1.8E-10 6.2E-15 124.1 13.3 83 10-92 212-306 (439)
68 1f6b_A SAR1; gtpases, N-termin 99.1 7.7E-11 2.6E-15 112.6 9.1 81 12-92 55-140 (198)
69 3pqc_A Probable GTP-binding pr 99.1 2E-10 7E-15 108.5 11.9 70 23-92 65-147 (195)
70 2p5s_A RAS and EF-hand domain 99.1 2.5E-10 8.6E-15 108.9 11.9 73 19-91 70-146 (199)
71 3a1s_A Iron(II) transport prot 99.1 6.2E-11 2.1E-15 118.4 7.8 80 10-91 36-123 (258)
72 1z0j_A RAB-22, RAS-related pro 99.1 2.5E-10 8.6E-15 105.2 11.2 68 24-91 53-124 (170)
73 1ek0_A Protein (GTP-binding pr 99.1 3E-10 1E-14 104.6 11.4 69 24-92 50-122 (170)
74 1moz_A ARL1, ADP-ribosylation 99.1 9.4E-11 3.2E-15 109.8 8.0 80 13-92 49-133 (183)
75 2il1_A RAB12; G-protein, GDP, 99.1 4.1E-10 1.4E-14 106.8 12.5 83 9-91 56-144 (192)
76 2hxs_A RAB-26, RAS-related pro 99.1 5.2E-10 1.8E-14 104.1 12.9 83 9-91 36-128 (178)
77 1z0f_A RAB14, member RAS oncog 99.1 3.1E-10 1.1E-14 105.5 11.4 73 19-91 57-133 (179)
78 1zbd_A Rabphilin-3A; G protein 99.1 2.5E-10 8.6E-15 109.0 10.9 70 23-92 54-127 (203)
79 2fu5_C RAS-related protein RAB 99.1 2.4E-10 8.4E-15 107.0 9.9 84 9-92 38-127 (183)
80 2erx_A GTP-binding protein DI- 99.1 8E-10 2.7E-14 101.9 13.2 68 24-91 49-122 (172)
81 2gf9_A RAS-related protein RAB 99.1 1.3E-10 4.6E-15 109.7 8.0 80 12-91 57-140 (189)
82 4dcu_A GTP-binding protein ENG 99.1 8.9E-11 3.1E-15 127.1 7.5 85 7-91 52-144 (456)
83 3gee_A MNME, tRNA modification 99.1 2.1E-10 7.2E-15 124.2 10.1 84 8-93 263-358 (476)
84 2g6b_A RAS-related protein RAB 99.1 3.4E-10 1.2E-14 105.6 10.2 74 19-92 51-130 (180)
85 3bc1_A RAS-related protein RAB 99.1 3.8E-10 1.3E-14 106.3 10.5 67 25-91 69-140 (195)
86 2fh5_B SR-beta, signal recogni 99.1 1.1E-09 3.7E-14 105.6 13.9 94 13-107 38-145 (214)
87 3tkl_A RAS-related protein RAB 99.1 5.4E-10 1.8E-14 105.8 11.5 83 10-92 47-135 (196)
88 3dz8_A RAS-related protein RAB 99.1 2.9E-10 1E-14 107.6 9.3 80 12-91 58-141 (191)
89 2wji_A Ferrous iron transport 99.1 3.6E-10 1.2E-14 104.4 9.7 80 10-91 34-121 (165)
90 3lxw_A GTPase IMAP family memb 99.1 4.2E-10 1.4E-14 111.6 10.6 88 10-98 54-159 (247)
91 2gj8_A MNME, tRNA modification 99.1 4.9E-10 1.7E-14 104.5 10.5 82 10-91 36-128 (172)
92 3kkq_A RAS-related protein M-R 99.1 4.3E-10 1.5E-14 105.3 10.2 67 26-92 66-137 (183)
93 2bme_A RAB4A, RAS-related prot 99.1 6.7E-10 2.3E-14 104.2 11.4 80 12-91 43-128 (186)
94 1kao_A RAP2A; GTP-binding prot 99.1 5.6E-10 1.9E-14 102.3 10.6 67 25-91 50-121 (167)
95 1c1y_A RAS-related protein RAP 99.1 6.9E-10 2.4E-14 101.9 11.1 68 24-91 49-121 (167)
96 2y8e_A RAB-protein 6, GH09086P 99.1 1.1E-09 3.8E-14 101.7 12.5 81 11-91 46-132 (179)
97 2qu8_A Putative nucleolar GTP- 99.1 2.6E-09 9E-14 104.2 15.8 81 12-92 62-156 (228)
98 3gj0_A GTP-binding nuclear pro 99.1 7.1E-11 2.4E-15 114.7 4.5 82 11-92 49-133 (221)
99 2hup_A RAS-related protein RAB 99.1 1.3E-09 4.3E-14 104.3 13.1 77 15-91 65-147 (201)
100 1x3s_A RAS-related protein RAB 99.0 4.4E-10 1.5E-14 106.2 9.5 75 17-91 55-134 (195)
101 1u8z_A RAS-related protein RAL 99.0 1.1E-09 3.7E-14 100.4 11.8 67 25-91 51-122 (168)
102 3clv_A RAB5 protein, putative; 99.0 1.1E-09 3.8E-14 103.9 12.2 64 26-89 93-158 (208)
103 3lvq_E ARF-GAP with SH3 domain 99.0 3.9E-10 1.3E-14 123.5 10.1 80 13-92 353-437 (497)
104 1wms_A RAB-9, RAB9, RAS-relate 99.0 1.9E-09 6.6E-14 100.1 13.1 82 10-91 38-129 (177)
105 4dsu_A GTPase KRAS, isoform 2B 99.0 9.1E-10 3.1E-14 103.4 10.8 67 26-92 52-123 (189)
106 2a9k_A RAS-related protein RAL 99.0 1.4E-09 4.8E-14 101.8 12.0 71 21-91 59-136 (187)
107 3tw8_B RAS-related protein RAB 99.0 2.9E-10 9.9E-15 105.9 7.2 84 8-91 38-126 (181)
108 3cph_A RAS-related protein SEC 99.0 5.7E-10 1.9E-14 107.2 9.4 81 11-91 52-138 (213)
109 2ce2_X GTPase HRAS; signaling 99.0 1.7E-09 5.8E-14 98.8 12.1 68 25-92 50-122 (166)
110 1xzp_A Probable tRNA modificat 99.0 1.3E-09 4.4E-14 118.1 12.9 81 10-92 275-364 (482)
111 2wjg_A FEOB, ferrous iron tran 99.0 5.6E-10 1.9E-14 105.0 8.9 80 10-91 38-125 (188)
112 2oil_A CATX-8, RAS-related pro 99.0 7.3E-10 2.5E-14 104.9 9.6 71 21-91 69-143 (193)
113 1g16_A RAS-related protein SEC 99.0 7.9E-10 2.7E-14 101.8 9.6 81 11-91 35-121 (170)
114 1z2a_A RAS-related protein RAB 99.0 5.3E-10 1.8E-14 102.8 8.4 67 25-91 53-122 (168)
115 1mh1_A RAC1; GTP-binding, GTPa 99.0 3.6E-10 1.2E-14 105.9 7.2 68 25-92 52-123 (186)
116 3b1v_A Ferrous iron uptake tra 99.0 2.8E-10 9.6E-15 114.4 6.9 78 11-91 35-120 (272)
117 2atx_A Small GTP binding prote 99.0 8.6E-10 2.9E-14 104.5 9.8 73 20-92 58-136 (194)
118 1z06_A RAS-related protein RAB 99.0 6.5E-10 2.2E-14 104.9 8.8 74 18-91 59-140 (189)
119 2a5j_A RAS-related protein RAB 99.0 6.1E-10 2.1E-14 105.4 8.6 72 20-91 62-139 (191)
120 2f7s_A C25KG, RAS-related prot 99.0 7.3E-10 2.5E-14 107.0 9.2 67 25-91 83-154 (217)
121 1jwy_B Dynamin A GTPase domain 99.0 3.1E-10 1E-14 116.6 6.5 77 16-92 118-212 (315)
122 2bov_A RAla, RAS-related prote 99.0 3.8E-09 1.3E-13 100.7 13.7 72 20-91 54-132 (206)
123 1z08_A RAS-related protein RAB 99.0 6.1E-10 2.1E-14 102.7 7.7 72 20-91 47-124 (170)
124 2gf0_A GTP-binding protein DI- 99.0 3.3E-09 1.1E-13 100.6 13.1 69 24-92 54-128 (199)
125 3t5g_A GTP-binding protein RHE 99.0 4.7E-10 1.6E-14 104.9 7.0 66 26-91 54-124 (181)
126 3bwd_D RAC-like GTP-binding pr 99.0 3.8E-10 1.3E-14 105.5 6.1 69 24-92 54-126 (182)
127 1vg8_A RAS-related protein RAB 99.0 2.5E-10 8.7E-15 109.2 4.7 78 14-91 43-130 (207)
128 2fn4_A P23, RAS-related protei 99.0 1.6E-09 5.6E-14 100.7 10.1 71 21-91 50-127 (181)
129 1ky3_A GTP-binding protein YPT 99.0 1.7E-09 5.8E-14 100.7 10.2 78 14-91 43-131 (182)
130 2ew1_A RAS-related protein RAB 99.0 2.3E-09 8E-14 102.6 11.3 78 14-91 61-144 (201)
131 3llu_A RAS-related GTP-binding 99.0 3.4E-09 1.2E-13 100.8 12.3 82 11-92 51-143 (196)
132 2bcg_Y Protein YP2, GTP-bindin 99.0 9.5E-10 3.3E-14 105.3 8.5 81 12-92 41-127 (206)
133 2nzj_A GTP-binding protein REM 99.0 2.9E-09 1E-13 98.5 11.6 68 25-92 51-125 (175)
134 4djt_A GTP-binding nuclear pro 99.0 5.1E-10 1.7E-14 108.2 6.5 66 26-91 61-130 (218)
135 4gzl_A RAS-related C3 botulinu 99.0 9.9E-10 3.4E-14 105.3 8.2 68 25-92 77-148 (204)
136 3q72_A GTP-binding protein RAD 99.0 1.7E-09 5.7E-14 99.4 9.3 69 24-92 47-120 (166)
137 3reg_A RHO-like small GTPase; 99.0 7.5E-10 2.6E-14 105.0 7.0 68 25-92 70-141 (194)
138 3con_A GTPase NRAS; structural 98.9 4.3E-09 1.5E-13 99.1 12.1 73 20-92 61-140 (190)
139 2o52_A RAS-related protein RAB 98.9 1.4E-09 4.9E-14 103.8 8.6 80 12-91 58-143 (200)
140 2yc2_C IFT27, small RAB-relate 98.9 1.6E-09 5.3E-14 103.5 8.5 77 16-92 59-146 (208)
141 3t5d_A Septin-7; GTP-binding p 98.9 1.4E-09 4.7E-14 109.6 8.4 163 9-180 46-267 (274)
142 3cpj_B GTP-binding protein YPT 98.9 1.7E-09 5.9E-14 105.1 8.5 79 13-91 47-131 (223)
143 3geh_A MNME, tRNA modification 98.9 1.1E-09 3.9E-14 118.0 7.8 81 10-92 256-344 (462)
144 2j0v_A RAC-like GTP-binding pr 98.9 1E-09 3.5E-14 105.6 6.3 68 25-92 56-127 (212)
145 3l0i_B RAS-related protein RAB 98.9 1.7E-10 5.8E-15 110.1 0.6 86 7-92 61-152 (199)
146 3oes_A GTPase rhebl1; small GT 98.9 7.5E-10 2.6E-14 105.7 4.8 71 21-91 67-142 (201)
147 3q85_A GTP-binding protein REM 98.9 6.8E-09 2.3E-13 95.5 11.2 67 25-91 50-122 (169)
148 2gco_A H9, RHO-related GTP-bin 98.9 2.5E-09 8.6E-14 102.1 8.4 68 25-92 72-143 (201)
149 2atv_A RERG, RAS-like estrogen 98.9 1.2E-08 4.3E-13 96.7 12.2 67 24-91 74-145 (196)
150 3lxx_A GTPase IMAP family memb 98.9 8.5E-10 2.9E-14 108.7 3.7 107 9-116 61-191 (239)
151 2fv8_A H6, RHO-related GTP-bin 98.8 4.1E-09 1.4E-13 101.1 8.1 68 25-92 72-143 (207)
152 2j1l_A RHO-related GTP-binding 98.8 6.9E-09 2.4E-13 100.2 9.2 68 25-92 81-152 (214)
153 3ihw_A Centg3; RAS, centaurin, 98.8 2.8E-08 9.7E-13 93.5 13.0 67 20-91 59-132 (184)
154 2xex_A Elongation factor G; GT 98.8 2E-09 6.8E-14 122.1 5.7 72 539-610 404-475 (693)
155 3q3j_B RHO-related GTP-binding 98.8 4.3E-09 1.5E-13 101.7 7.3 71 22-92 71-145 (214)
156 2q3h_A RAS homolog gene family 98.8 4.9E-09 1.7E-13 99.8 7.5 73 20-92 60-138 (201)
157 2aka_B Dynamin-1; fusion prote 98.8 5.2E-09 1.8E-13 106.4 7.7 68 25-92 124-206 (299)
158 2cxx_A Probable GTP-binding pr 98.8 1.1E-08 3.6E-13 96.2 9.2 91 11-106 33-149 (190)
159 2rdo_7 EF-G, elongation factor 98.8 4.3E-09 1.5E-13 119.4 7.6 72 539-610 412-483 (704)
160 1lnz_A SPO0B-associated GTP-bi 98.8 1.2E-08 3.9E-13 105.8 9.6 82 11-92 190-288 (342)
161 3th5_A RAS-related C3 botulinu 98.3 7E-10 2.4E-14 106.1 0.0 69 24-92 76-148 (204)
162 3r7w_A Gtpase1, GTP-binding pr 98.8 3.4E-08 1.2E-12 101.1 12.2 85 8-92 33-129 (307)
163 1n0u_A EF-2, elongation factor 98.8 5.9E-09 2E-13 120.6 6.9 70 540-610 486-556 (842)
164 4fn5_A EF-G 1, elongation fact 98.7 7.2E-09 2.4E-13 118.0 7.1 72 539-610 415-486 (709)
165 3c5c_A RAS-like protein 12; GD 98.7 2E-08 6.8E-13 94.7 8.9 67 24-91 67-140 (187)
166 2iwr_A Centaurin gamma 1; ANK 98.7 8.2E-08 2.8E-12 89.2 12.7 62 25-91 53-121 (178)
167 3cbq_A GTP-binding protein REM 98.7 1.1E-07 3.8E-12 90.3 13.1 74 19-92 63-144 (195)
168 4dkx_A RAS-related protein RAB 98.7 7.1E-08 2.4E-12 93.4 11.5 67 25-91 61-131 (216)
169 1m7b_A RND3/RHOE small GTP-bin 98.7 1.3E-08 4.6E-13 95.4 5.6 69 24-92 53-125 (184)
170 3e3x_A BIPA; MCSG,PSI2, struct 98.7 2.2E-08 7.6E-13 101.4 7.1 71 539-610 30-109 (332)
171 2wkq_A NPH1-1, RAS-related C3 98.7 3.3E-08 1.1E-12 101.7 8.6 72 21-92 196-273 (332)
172 3tr5_A RF-3, peptide chain rel 98.7 2.5E-08 8.5E-13 109.3 7.7 71 539-610 392-462 (528)
173 2h5e_A Peptide chain release f 98.7 2.1E-08 7.2E-13 110.0 7.0 71 539-610 393-463 (529)
174 3vqt_A RF-3, peptide chain rel 98.7 2.2E-08 7.5E-13 110.3 7.1 71 539-610 411-481 (548)
175 2qtf_A Protein HFLX, GTP-bindi 98.6 2.2E-07 7.5E-12 97.2 13.5 84 10-93 210-307 (364)
176 3j25_A Tetracycline resistance 98.6 5.8E-09 2E-13 117.2 1.3 72 539-610 341-412 (638)
177 3p32_A Probable GTPase RV1496/ 98.6 1.9E-08 6.6E-13 105.0 4.8 63 22-91 168-230 (355)
178 2e87_A Hypothetical protein PH 98.6 1.5E-07 5E-12 98.4 11.4 81 11-91 199-293 (357)
179 1dar_A EF-G, elongation factor 98.6 4E-09 1.4E-13 119.6 -0.7 72 539-610 405-476 (691)
180 1gwn_A RHO-related GTP-binding 98.6 2.9E-08 9.8E-13 95.2 5.5 68 25-92 75-146 (205)
181 3e1y_E Eukaryotic peptide chai 98.6 9.5E-08 3.2E-12 91.5 8.9 82 257-344 3-89 (204)
182 2dy1_A Elongation factor G; tr 98.6 3.1E-08 1.1E-12 111.8 6.2 71 539-610 379-449 (665)
183 3dpu_A RAB family protein; roc 98.6 5.1E-08 1.7E-12 107.6 7.5 67 24-92 96-164 (535)
184 3def_A T7I23.11 protein; chlor 98.5 2E-07 6.7E-12 93.0 8.7 93 9-101 67-177 (262)
185 1cip_A Protein (guanine nucleo 98.5 1.3E-07 4.3E-12 98.4 7.5 82 10-91 177-273 (353)
186 2j69_A Bacterial dynamin-like 98.5 1.6E-07 5.5E-12 106.4 8.4 66 26-91 174-243 (695)
187 2qpt_A EH domain-containing pr 98.5 1.5E-07 5.1E-12 103.8 7.1 77 26-102 154-243 (550)
188 1pui_A ENGB, probable GTP-bind 98.5 1.2E-06 4.1E-11 83.6 12.7 65 27-91 73-150 (210)
189 1h65_A Chloroplast outer envel 98.5 6.7E-07 2.3E-11 89.6 11.3 94 10-103 71-182 (270)
190 3zvr_A Dynamin-1; hydrolase, D 98.5 1.2E-07 4E-12 107.1 6.2 68 25-92 149-231 (772)
191 2x2e_A Dynamin-1; nitration, h 98.4 2E-07 6.9E-12 97.2 6.4 83 10-92 113-211 (353)
192 1yrb_A ATP(GTP)binding protein 98.4 4.8E-07 1.6E-11 89.8 8.6 67 25-92 108-185 (262)
193 2zej_A Dardarin, leucine-rich 98.4 4.9E-07 1.7E-11 84.7 8.0 69 24-92 54-126 (184)
194 1zcb_A G alpha I/13; GTP-bindi 98.4 3.7E-07 1.3E-11 95.2 7.0 82 10-91 185-281 (362)
195 1nrj_B SR-beta, signal recogni 98.4 8.8E-07 3E-11 85.2 9.1 80 24-103 53-146 (218)
196 2qag_A Septin-2, protein NEDD5 98.4 8E-07 2.7E-11 92.9 9.0 83 9-92 76-188 (361)
197 2ged_A SR-beta, signal recogni 98.3 4.3E-07 1.5E-11 85.5 5.6 85 23-107 88-186 (193)
198 2wsm_A Hydrogenase expression/ 98.3 4.1E-07 1.4E-11 87.8 5.4 63 22-91 105-167 (221)
199 2g3y_A GTP-binding protein GEM 98.3 2.4E-06 8.2E-11 82.3 10.0 72 20-91 79-158 (211)
200 3r7w_B Gtpase2, GTP-binding pr 98.2 5.3E-06 1.8E-10 84.6 11.7 81 11-93 32-121 (331)
201 2j37_W Signal recognition part 98.2 6E-07 2E-11 97.3 4.7 152 22-202 180-343 (504)
202 1wxq_A GTP-binding protein; st 98.2 3.7E-07 1.3E-11 96.5 2.0 38 25-62 70-114 (397)
203 2f9l_A RAB11B, member RAS onco 98.2 4.3E-06 1.5E-10 79.2 9.2 74 18-91 44-123 (199)
204 2ywe_A GTP-binding protein LEP 98.1 1.2E-06 4.2E-11 96.9 4.5 70 539-610 293-367 (600)
205 2cjw_A GTP-binding protein GEM 98.1 9E-06 3.1E-10 76.7 9.7 72 20-91 48-127 (192)
206 4fid_A G protein alpha subunit 98.1 3.9E-06 1.3E-10 86.3 7.5 83 9-91 144-241 (340)
207 1udx_A The GTP-binding protein 98.1 1.1E-05 3.9E-10 85.4 10.7 80 13-92 191-283 (416)
208 1puj_A YLQF, conserved hypothe 98.1 5.1E-06 1.7E-10 83.7 7.3 59 31-91 4-63 (282)
209 2xxa_A Signal recognition part 98.1 1.8E-05 6.1E-10 84.4 11.7 151 23-204 181-347 (433)
210 3c5h_A Glucocorticoid receptor 98.0 2.8E-06 9.7E-11 84.2 5.0 43 49-91 162-211 (255)
211 2www_A Methylmalonic aciduria 98.0 5.6E-06 1.9E-10 86.0 7.2 62 23-91 164-225 (349)
212 3kl4_A SRP54, signal recogniti 98.0 6.6E-05 2.3E-09 79.7 14.7 150 23-202 177-344 (433)
213 1azs_C GS-alpha; complex (lyas 98.0 1.1E-05 3.7E-10 84.9 8.3 83 9-91 200-297 (402)
214 3ohm_A Guanine nucleotide-bind 98.0 1.1E-05 3.8E-10 82.6 7.7 82 10-91 151-247 (327)
215 3t34_A Dynamin-related protein 98.0 1.6E-05 5.6E-10 82.9 8.9 80 13-92 120-217 (360)
216 3cb4_D GTP-binding protein LEP 97.9 3.8E-06 1.3E-10 93.1 4.3 70 539-610 291-365 (599)
217 1u0l_A Probable GTPase ENGC; p 97.9 9.4E-06 3.2E-10 82.5 6.2 64 26-91 63-128 (301)
218 1oix_A RAS-related protein RAB 97.9 8.6E-06 2.9E-10 76.7 4.9 74 18-91 68-147 (191)
219 2xtz_A Guanine nucleotide-bind 97.9 2.1E-05 7.3E-10 81.5 7.7 83 9-91 160-263 (354)
220 4a9a_A Ribosome-interacting GT 97.7 0.00033 1.1E-08 73.0 14.2 82 10-92 103-196 (376)
221 3ec1_A YQEH GTPase; atnos1, at 97.7 0.00012 4.2E-09 76.4 11.0 63 27-92 50-112 (369)
222 3cnl_A YLQF, putative uncharac 97.6 2.3E-05 7.7E-10 78.0 3.6 54 34-91 5-59 (262)
223 2yv5_A YJEQ protein; hydrolase 97.5 0.00013 4.5E-09 74.0 7.9 56 36-91 66-123 (302)
224 3h2y_A GTPase family protein; 97.4 0.0003 1E-08 73.4 9.3 55 36-92 56-110 (368)
225 2v3c_C SRP54, signal recogniti 97.4 3.1E-05 1E-09 82.6 1.6 157 24-212 179-354 (432)
226 2qm8_A GTPase/ATPase; G protei 97.4 0.00017 5.8E-09 74.4 6.4 63 22-91 144-206 (337)
227 1xe1_A Hypothetical protein PF 97.4 0.0011 3.7E-08 56.0 9.8 76 258-340 32-112 (116)
228 3l82_B F-box only protein 4; T 97.2 0.0011 3.9E-08 62.6 9.4 58 35-92 111-177 (227)
229 1jal_A YCHF protein; nucleotid 97.1 0.0047 1.6E-07 63.9 13.5 51 11-61 34-108 (363)
230 4dzz_A Plasmid partitioning pr 96.9 0.0016 5.5E-08 61.4 7.8 82 24-109 74-160 (206)
231 2ph1_A Nucleotide-binding prot 96.9 0.0021 7.2E-08 63.5 8.1 89 23-111 126-223 (262)
232 3dm5_A SRP54, signal recogniti 96.8 0.03 1E-06 59.3 17.2 81 24-108 181-267 (443)
233 3cwq_A Para family chromosome 96.7 0.0023 7.9E-08 61.0 7.0 83 24-109 66-151 (209)
234 3l2o_B F-box only protein 4; s 96.7 0.0061 2.1E-07 60.5 9.4 59 35-93 196-263 (312)
235 2hf9_A Probable hydrogenase ni 96.6 0.0018 6.2E-08 62.0 5.5 59 25-91 118-177 (226)
236 1j8m_F SRP54, signal recogniti 96.6 0.0037 1.3E-07 63.1 7.7 82 23-109 178-268 (297)
237 2dby_A GTP-binding protein; GD 96.5 0.028 9.6E-07 58.3 14.1 38 24-61 67-111 (368)
238 2qag_C Septin-7; cell cycle, c 96.5 0.0039 1.3E-07 65.9 7.4 64 27-91 89-180 (418)
239 1wcv_1 SOJ, segregation protei 96.5 0.006 2E-07 59.9 8.3 84 24-109 110-200 (257)
240 1t9h_A YLOQ, probable GTPase E 96.4 0.0016 5.5E-08 65.9 3.6 48 45-92 82-131 (307)
241 1hyq_A MIND, cell division inh 96.4 0.0061 2.1E-07 59.9 7.8 82 24-109 109-191 (263)
242 1g3q_A MIND ATPase, cell divis 96.4 0.0064 2.2E-07 58.6 7.9 82 24-109 110-192 (237)
243 1d1n_A Initiation factor 2; be 96.2 0.011 3.9E-07 48.4 7.0 73 264-340 10-89 (99)
244 2qnr_A Septin-2, protein NEDD5 96.2 0.0075 2.6E-07 60.9 7.4 65 26-91 76-168 (301)
245 3kjh_A CO dehydrogenase/acetyl 96.1 0.0058 2E-07 59.3 5.8 87 23-116 129-216 (254)
246 2oze_A ORF delta'; para, walke 95.9 0.013 4.6E-07 58.6 7.5 83 24-108 153-242 (298)
247 3h2y_A GTPase family protein; 95.6 0.0012 4.1E-08 68.8 -1.5 83 27-109 212-305 (368)
248 1byi_A Dethiobiotin synthase; 95.4 0.068 2.3E-06 50.8 10.3 94 24-118 107-206 (224)
249 3ec1_A YQEH GTPase; atnos1, at 95.4 0.00088 3E-08 69.9 -3.5 82 27-108 213-305 (369)
250 2xj4_A MIPZ; replication, cell 95.2 0.016 5.5E-07 57.9 4.9 82 25-108 103-212 (286)
251 2crv_A IF-2MT, translation ini 95.0 0.089 3.1E-06 44.6 8.2 72 265-340 15-97 (120)
252 3bfv_A CAPA1, CAPB2, membrane 94.9 0.043 1.5E-06 54.4 7.1 67 25-92 191-258 (271)
253 3la6_A Tyrosine-protein kinase 94.8 0.04 1.4E-06 55.1 6.6 67 25-92 201-268 (286)
254 2rcn_A Probable GTPase ENGC; Y 94.7 0.079 2.7E-06 54.6 8.7 44 47-92 128-174 (358)
255 3k9g_A PF-32 protein; ssgcid, 94.5 0.066 2.3E-06 52.5 7.5 78 24-104 143-222 (267)
256 3ea0_A ATPase, para family; al 94.4 0.079 2.7E-06 51.0 7.5 81 25-110 118-201 (245)
257 3cio_A ETK, tyrosine-protein k 94.4 0.072 2.5E-06 53.6 7.4 66 25-91 213-279 (299)
258 3end_A Light-independent proto 94.1 0.065 2.2E-06 53.9 6.4 82 24-111 155-241 (307)
259 3ez9_A Para; DNA binding, wing 94.0 0.066 2.3E-06 56.2 6.5 91 23-116 245-347 (403)
260 3q9l_A Septum site-determining 93.8 0.066 2.2E-06 52.1 5.7 83 25-109 113-206 (260)
261 1tq4_A IIGP1, interferon-induc 93.2 0.43 1.5E-05 50.1 10.9 63 27-91 121-188 (413)
262 1zu4_A FTSY; GTPase, signal re 93.0 0.46 1.6E-05 48.1 10.6 80 24-110 190-284 (320)
263 2ffh_A Protein (FFH); SRP54, s 92.9 0.16 5.3E-06 53.6 7.2 82 24-110 179-267 (425)
264 3of5_A Dethiobiotin synthetase 92.9 0.26 9E-06 47.3 8.3 85 24-110 109-201 (228)
265 2qag_B Septin-6, protein NEDD5 92.3 0.22 7.5E-06 52.4 7.3 56 52-108 151-207 (427)
266 1zo1_I IF2, translation initia 91.7 0.48 1.7E-05 51.0 9.3 72 265-340 413-491 (501)
267 2ohf_A Protein OLA1, GTP-bindi 91.7 0.12 4.3E-06 53.8 4.4 52 10-61 53-128 (396)
268 2afh_E Nitrogenase iron protei 91.6 0.25 8.7E-06 48.9 6.5 85 25-111 118-208 (289)
269 1cp2_A CP2, nitrogenase iron p 91.5 0.3 1E-05 47.7 6.8 86 24-111 114-205 (269)
270 3izy_P Translation initiation 90.8 0.87 3E-05 49.4 10.2 75 262-340 449-534 (537)
271 1ls1_A Signal recognition part 90.6 0.41 1.4E-05 47.9 6.9 81 24-109 179-266 (295)
272 3ez2_A Plasmid partition prote 90.3 0.24 8.2E-06 51.8 5.1 90 24-116 243-344 (398)
273 2woo_A ATPase GET3; tail-ancho 89.7 0.83 2.8E-05 46.3 8.4 66 51-117 222-299 (329)
274 3ug7_A Arsenical pump-driving 88.3 1.3 4.6E-05 45.2 8.9 67 50-117 237-314 (349)
275 1vma_A Cell division protein F 88.0 0.78 2.7E-05 46.1 6.7 81 24-109 185-278 (306)
276 3pg5_A Uncharacterized protein 87.9 0.35 1.2E-05 49.9 4.2 35 25-61 153-187 (361)
277 1g7s_A Translation initiation 87.4 2 6.7E-05 47.3 10.1 77 259-340 462-547 (594)
278 3zq6_A Putative arsenical pump 86.8 1 3.5E-05 45.5 6.9 66 51-117 223-299 (324)
279 1ihu_A Arsenical pump-driving 85.4 0.46 1.6E-05 52.4 3.7 86 23-108 438-560 (589)
280 2px0_A Flagellar biosynthesis 85.0 0.67 2.3E-05 46.3 4.3 78 24-107 181-266 (296)
281 3fgn_A Dethiobiotin synthetase 84.2 2.8 9.7E-05 40.6 8.3 88 24-116 125-222 (251)
282 2woj_A ATPase GET3; tail-ancho 83.7 0.69 2.4E-05 47.5 3.8 41 49-89 234-275 (354)
283 3sop_A Neuronal-specific septi 82.8 0.8 2.7E-05 45.0 3.8 57 50-107 112-170 (270)
284 3szr_A Interferon-induced GTP- 81.3 2.4 8.3E-05 46.8 7.3 68 25-92 146-228 (608)
285 3e70_C DPA, signal recognition 81.2 1.7 5.7E-05 44.1 5.5 81 25-109 211-297 (328)
286 1f5n_A Interferon-induced guan 79.0 0.92 3.1E-05 49.8 2.9 55 24-78 89-149 (592)
287 1ni3_A YCHF GTPase, YCHF GTP-b 78.4 2.3 8E-05 44.1 5.6 51 11-61 53-127 (392)
288 3io3_A DEHA2D07832P; chaperone 78.3 6.2 0.00021 40.2 8.8 57 51-107 232-302 (348)
289 3qxc_A Dethiobiotin synthetase 76.7 4.6 0.00016 38.8 6.9 67 24-92 130-203 (242)
290 2yhs_A FTSY, cell division pro 73.9 7.1 0.00024 41.7 7.9 81 24-109 374-467 (503)
291 3iqw_A Tail-anchored protein t 73.5 15 0.0005 37.1 10.0 58 51-108 223-293 (334)
292 1ihu_A Arsenical pump-driving 63.2 8.6 0.0003 42.0 6.2 40 52-91 200-240 (589)
293 1rj9_A FTSY, signal recognitio 62.0 13 0.00046 36.9 6.8 81 25-110 184-277 (304)
294 3fkq_A NTRC-like two-domain pr 60.5 2.7 9.3E-05 43.2 1.4 37 23-61 257-293 (373)
295 2f62_A Nucleoside 2-deoxyribos 42.5 25 0.00086 31.3 4.5 45 44-88 62-108 (161)
296 4he6_A Peptidase family U32; u 41.2 24 0.00083 27.8 3.8 74 261-340 8-86 (89)
297 3ehd_A Uncharacterized conserv 36.0 58 0.002 29.0 5.8 59 43-102 63-121 (162)
298 3imk_A Putative molybdenum car 35.9 96 0.0033 27.3 7.0 73 27-106 52-124 (158)
299 4fyk_A Deoxyribonucleoside 5'- 33.4 57 0.0019 28.7 5.2 42 43-87 62-103 (152)
300 1s2d_A Purine trans deoxyribos 32.6 73 0.0025 28.4 6.0 40 44-84 76-115 (167)
301 3v7e_A Ribosome-associated pro 32.3 52 0.0018 25.4 4.4 50 40-90 16-65 (82)
302 2obn_A Hypothetical protein; s 32.2 1.4E+02 0.0049 30.0 8.7 77 33-111 239-332 (349)
303 2khz_A C-MYC-responsive protei 31.8 63 0.0021 28.7 5.5 43 44-89 72-114 (165)
304 3j21_Z 50S ribosomal protein L 27.6 93 0.0032 24.9 5.3 49 41-90 21-70 (99)
305 3b9q_A Chloroplast SRP recepto 27.2 2.3E+02 0.0079 27.6 9.2 80 25-109 183-275 (302)
306 3onr_A Protein transport prote 26.7 81 0.0028 23.9 4.3 39 487-525 15-54 (72)
307 2aif_A Ribosomal protein L7A; 25.7 83 0.0029 26.9 4.9 49 41-89 47-95 (135)
308 2ale_A SNU13, NHP2/L7AE family 24.3 92 0.0031 26.7 4.9 50 40-89 37-86 (134)
309 2ux9_A Dodecin; flavoprotein; 24.1 83 0.0028 23.7 3.9 39 486-524 14-53 (69)
310 2vxa_A Dodecin; flavoprotein, 23.7 84 0.0029 23.8 3.9 39 486-524 15-54 (72)
311 2yiz_A Dodecin; flavoprotein, 23.5 85 0.0029 23.6 3.9 39 486-524 14-53 (69)
312 2hc5_A ORF 99, hypothetical pr 22.7 1.1E+02 0.0038 25.5 4.9 36 368-403 34-73 (117)
313 1puj_A YLQF, conserved hypothe 22.4 34 0.0012 33.4 1.9 25 11-38 153-177 (282)
314 2og2_A Putative signal recogni 22.2 1.5E+02 0.0052 29.9 6.9 80 25-109 240-332 (359)
315 1xbi_A 50S ribosomal protein L 22.0 71 0.0024 26.7 3.6 49 41-89 35-83 (120)
316 3fwy_A Light-independent proto 22.0 71 0.0024 31.6 4.3 80 24-109 162-246 (314)
317 1f8y_A Nucleoside 2-deoxyribos 21.9 1E+02 0.0035 27.1 4.8 43 44-87 73-115 (157)
318 3v7q_A Probable ribosomal prot 21.5 77 0.0026 25.5 3.7 48 41-89 25-72 (101)
319 2lbw_A H/ACA ribonucleoprotein 21.4 82 0.0028 26.3 3.9 50 40-89 25-74 (121)
320 1vq8_F 50S ribosomal protein L 21.2 78 0.0027 26.4 3.8 49 41-89 35-83 (120)
321 2p67_A LAO/AO transport system 20.9 65 0.0022 32.2 3.8 27 204-230 234-260 (341)
322 2cc6_A VNG1446H, dodecin; flav 20.4 81 0.0028 23.6 3.2 39 486-524 12-51 (68)
323 2fc3_A 50S ribosomal protein L 20.4 82 0.0028 26.4 3.7 49 41-89 34-82 (124)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.8e-119 Score=1025.13 Aligned_cols=584 Identities=40% Similarity=0.651 Sum_probs=534.8
Q ss_pred CCChHHHHHhcceeecceeEEEec-------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~ 73 (610)
||++++||+|||||+|+.+++.|+ +|+|||||||||+||+.||.+|||++||||+||||++||++||+++|++
T Consensus 53 ~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~ 132 (709)
T 4fn5_A 53 TDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ 132 (709)
T ss_dssp ---------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH
Confidence 799999999999999999999996 6999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecC-CCCCceEeecCch
Q psy12559 74 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPA 152 (610)
Q Consensus 74 ~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~-~~g~~~~~~~~~~ 152 (610)
|.++++|+|+|||||||.++++..++++++++|+..+.++++|++.++.|.|++|++++++++|.. ..|..+...++|.
T Consensus 133 a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~ 212 (709)
T 4fn5_A 133 ANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPA 212 (709)
T ss_dssp HHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCH
T ss_pred HHHcCCCeEEEEccccccCccHHHHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999965 4577888899999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 153 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 153 ~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
++.+....+|..++|.+++.|+.++++|+++..++.+++...+++....+.++|++|+||++|.|++.|||+|++++|+|
T Consensus 213 ~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP 292 (709)
T 4fn5_A 213 ELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAP 292 (709)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccc-CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEec
Q psy12559 233 GEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH 310 (610)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~ 310 (610)
.+.+..+... .++.......|+ +++|++++|||+.+|++ |+++|+|||||+|++||+|+|..+++.+++++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~d--~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~ 370 (709)
T 4fn5_A 293 TEIPAIKGVSPDDETVEDERHAD--DNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMH 370 (709)
T ss_dssp TSSCCEECBCCC-CCSCCEECSC--TTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCC
T ss_pred cccccccccCCccccccccccCC--ccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEee
Confidence 9876553322 223334567888 99999999999999998 9999999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeE
Q psy12559 311 SNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 389 (610)
Q Consensus 311 g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~ 389 (610)
|+++++++++.|||||+|.|+ ++.+||||+ +...+..++++.+|+|+++++|+|.+++|++||.++|++|++|||+++
T Consensus 371 g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~-~~~~~~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~ 449 (709)
T 4fn5_A 371 ANQREEIKEVRAGDIAALIGMKDVTTGDTLC-SIEKPIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFR 449 (709)
T ss_dssp SSCCCEESEECTTCEEEECSCSSCCTTCEEE-CSSSCCBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCE
T ss_pred cceeeEeeeecCCCeeeecCCCcCccCCEec-CCCccccCCCCCCCCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEE
Confidence 999999999999999999999 899999999 677788889999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeeccc-ceeeeeeeeccCCCCccEEEEEEEEeCC
Q psy12559 390 FFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQP-FDFDYLHKKQSGGSGQYGRVIGTLEPLP 468 (610)
Q Consensus 390 ~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~-~~~~~~~~~~~g~~~~~~~v~~~~ePl~ 468 (610)
++.+++|||++|+||||||||||++||+++||+++.+|+|.|+|||||++. ++.+++|++|+||++||+.++++++|++
T Consensus 450 v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 529 (709)
T 4fn5_A 450 VKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAAD 529 (709)
T ss_dssp EEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeecc
Confidence 999999999999999999999999999999999999999999999999874 5778999999999999999999999974
Q ss_pred C----CCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCccee
Q psy12559 469 P----SANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVS 544 (610)
Q Consensus 469 ~----~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~ 544 (610)
. ..+.++.|.+++.|+.+|++|+++|++||+||+++||||||||+||+|+|+|+++|++||++++|+.|++.|+++
T Consensus 530 ~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~ 609 (709)
T 4fn5_A 530 VDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQ 609 (709)
T ss_dssp BC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHT
T ss_pred ccccCCCcCceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHH
Confidence 3 235679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 545 MSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 545 ~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
+..++.+ .++||++.+++.+|+|.++.++.|++.||++|.+|.
T Consensus 610 a~~~a~p--~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~ 652 (709)
T 4fn5_A 610 LAQKGGG--KVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGME 652 (709)
T ss_dssp HHHHSCC--EEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEE
T ss_pred HHHHCCC--EEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceE
Confidence 9998887 699999999999999999999999999999999875
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.9e-114 Score=983.99 Aligned_cols=583 Identities=42% Similarity=0.662 Sum_probs=553.0
Q ss_pred CCChHHHHHhcceeecceeEEEecC-------eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKD-------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~-------~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~ 73 (610)
+|++++|++|||||+++..++.|++ +.+||||||||.||..++.++++.+|+||+|+|+++|++.||+.+|++
T Consensus 50 ~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~ 129 (704)
T 2rdo_7 50 MDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ 129 (704)
T ss_pred ecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH
Confidence 5899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecC-CCCCceEeecCch
Q psy12559 74 MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEG-PLGDNLRIEEIPA 152 (610)
Q Consensus 74 ~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~-~~g~~~~~~~~~~ 152 (610)
+...++|+++|+||||+..++++++++++++.|+.++.++++|++.+..|.|++|++.+++++|+. ..|..+...++|+
T Consensus 130 ~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~ 209 (704)
T 2rdo_7 130 ANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPA 209 (704)
T ss_pred HHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999976 4477788888999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCC
Q psy12559 153 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232 (610)
Q Consensus 153 ~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp 232 (610)
++.+++.++|++|+|.+++.||++|++||++.+++.+++..++++.+..++++|+|||||++|.|++.|||+|++++|+|
T Consensus 210 ~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP 289 (704)
T 2rdo_7 210 DMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSP 289 (704)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccc-CcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEec
Q psy12559 233 GEVTNYAIEN-GQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLH 310 (610)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~ 310 (610)
.+.+..+... .++.......|+ +++||+++|||+++|++ |+++|+|||||+|++||+|++.+++++++|++|+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 290 VDVPAINGILDDGKDTPAERHAS--DDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred hhcccccccCCcccccccccccC--CCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 8764432110 001111456777 89999999999999998 9999999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeE
Q psy12559 311 SNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 389 (610)
Q Consensus 311 g~~~~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~ 389 (610)
|++++++++|.|||||+|.|+ ++++||||| +...+..++++.++.|+++++|+|++++|.+||.++|++|++|||+++
T Consensus 368 g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~-~~~~~~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~ 446 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAIGLKDVTTGDTLC-DPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFR 446 (704)
T ss_pred CCCceEcceeCCCCEEEEeCcccCccCCEEe-CCCcccccCCCCCCCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEE
Confidence 999999999999999999999 889999999 666778899999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccc-eeeeeeeeccCCCCccEEEEEEEEeC-
Q psy12559 390 FFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPF-DFDYLHKKQSGGSGQYGRVIGTLEPL- 467 (610)
Q Consensus 390 ~~~d~etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~~ePl- 467 (610)
++.|++|||++|+|||||||||+++||+++||+++.+++|+|+|||||++++ +..++|++|+||+||||+|+++++|+
T Consensus 447 v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~ 526 (704)
T 2rdo_7 447 VWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE 526 (704)
T ss_pred EEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred --CCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceee
Q psy12559 468 --PPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSM 545 (610)
Q Consensus 468 --~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~ 545 (610)
++ +.++.|+++++|+++|++|++||++||+||+++||||||||+||+|+|+|+++|++||++++|+.|+++|++++
T Consensus 527 ~~~~--g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a 604 (704)
T 2rdo_7 527 PGSN--PKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEG 604 (704)
T ss_pred CCCC--CCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHH
Confidence 64 66899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 546 SIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 546 ~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
..+|.+ .++||++.+++.+|++++++++.|++.||++|.+|..
T Consensus 605 ~~~a~p--~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 647 (704)
T 2rdo_7 605 FKKAKP--VLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQES 647 (704)
T ss_pred HHhcCC--eeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCcee
Confidence 999987 6999999999999999999999999999999999864
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.6e-112 Score=967.63 Aligned_cols=583 Identities=40% Similarity=0.630 Sum_probs=537.7
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||+||.+...++.|+++.+||||||||.||..++.++++.+|++|+|+|+.+|++.||+.+|+++.+.++|
T Consensus 50 ~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p 129 (693)
T 2xex_A 50 MDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP 129 (693)
T ss_dssp --------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC
T ss_pred cccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||+|+..+++.++++++++.|+.++.+.++|+..+.++.|++|++.++.++|+.+.|..+...++|..+.+.+..
T Consensus 130 ~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 209 (693)
T 2xex_A 130 RIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEE 209 (693)
T ss_dssp EEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHH
T ss_pred EEEEEECCCccccchHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999972246667888999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
.|+++++.+++.||++|++||++..++.+++..++++.+..+.++||||+||++|.|++.||++|++++|+|.+++.++.
T Consensus 210 ~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~ 289 (693)
T 2xex_A 210 ARASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG 289 (693)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE
T ss_pred HHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred ccC-cccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 241 ENG-QEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
... ++.......|+ +++||+++|||+++|++ |+++|+|||||+|++||+|+|.+++++++|++|+.++|+++++++
T Consensus 290 ~~~~~~~~~~~~~~~--~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 290 HRASNPEEEVIAKAD--DSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EETTEEEEEEEECSC--TTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred cCCCccccceeecCC--CCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 110 00134567888 89999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCC
Q psy12559 319 EVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESK 397 (610)
Q Consensus 319 ~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etg 397 (610)
++.|||||++.|+ ++++||||| +...+..++++.+|.|+++++|+|++++|.+||.++|++|++|||+|+++.|++||
T Consensus 368 ~~~aGdI~~i~gl~~~~~GdTl~-~~~~~~~~~~~~~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~ 446 (693)
T 2xex_A 368 TVYSGDIAAAVGLKDTGTGDTLC-GEKNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETG 446 (693)
T ss_dssp EEETTCEEEEESCSSCCTTCEEE-ETTCCEECCCCSSCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CC
T ss_pred ccCcCCEEEEeCcccCccCCEEe-cCCCccccCCcCCCCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCC
Confidence 9999999999999 889999999 66677889999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEE
Q psy12559 398 ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477 (610)
Q Consensus 398 e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f 477 (610)
|++|+|||||||||+++||+++||+++.+++|+|+|||||+++++..++|+||+||+||||+|+++++|+++ |.++.|
T Consensus 447 e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f 524 (693)
T 2xex_A 447 QVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNET--GAGFEF 524 (693)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCT--TCCCEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCC--CCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 678999
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhh
Q psy12559 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDN 557 (610)
Q Consensus 478 ~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e 557 (610)
+++++|+.+|++|++||++||+||+++||||||||+||+|+|+|+++|++||++++|+.|+++|++++..+|.+ .++|
T Consensus 525 ~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p--~llE 602 (693)
T 2xex_A 525 ENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDP--VILE 602 (693)
T ss_dssp EECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCE--EEEE
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCC--EEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 6999
Q ss_pred HHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 558 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 558 ~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
|++.+++.+|++++++++.|++.||++|.+|..
T Consensus 603 Pi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 635 (693)
T 2xex_A 603 PMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEP 635 (693)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHhCCcEeecccc
Confidence 999999999999999999999999999999853
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=4.3e-113 Score=972.01 Aligned_cols=582 Identities=42% Similarity=0.682 Sum_probs=494.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||+||.+...++.|+++.+||||||||.||..++.++++.+|++|+|+|+++|++.||+.+|+++.+.++|
T Consensus 52 ~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p 131 (691)
T 1dar_A 52 MDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131 (691)
T ss_dssp ---------------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred ccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+++|+||+|+..+++.++++++++.++.++.+.++|++.+..|.||+|++.+++++|+++.|..+...++|+++.+.+.+
T Consensus 132 ~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (691)
T 1dar_A 132 RIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQARE 211 (691)
T ss_dssp EEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHH
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999973346678888999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
+|++|+|.+++.||+++++||++.+++.+++..++++.+..+.++||||+||++|.|+++||++|++++|+|.+++.++.
T Consensus 212 ~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~ 291 (691)
T 1dar_A 212 YHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKG 291 (691)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEE
T ss_pred HHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654322
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
... ..+...+.|+ +++|++++|||++.|++ |+++|+|||||+|++||+|+|.++++.++|++++.++|++++++++
T Consensus 292 ~~~-~~~~~~~~~~--~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~ 368 (691)
T 1dar_A 292 TTP-EGEVVEIHPD--PNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEE 368 (691)
T ss_dssp ECS-SSCEEEECCC--TTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESE
T ss_pred cCC-CccccccccC--CCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEcce
Confidence 111 1234567788 89999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCC-CcccCceEecCCCCc-cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCC
Q psy12559 320 VLAGDIFALFGV-DCASGDTFVTDKNNS-ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESK 397 (610)
Q Consensus 320 a~aGdiv~i~gl-~~~~Gdtl~~~~~~~-~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etg 397 (610)
|.|||||++.|+ ++.+||||| +...+ ..++++.++.|+++++|+|++++|.+||.++|++|++|||+++++.|++||
T Consensus 369 ~~aGdI~~i~gl~~~~~Gdtl~-~~~~~~~~l~~~~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~ 447 (691)
T 1dar_A 369 LKAGDLGAVVGLKETITGDTLV-GEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETG 447 (691)
T ss_dssp EETTCEEEEECCSSCCTTCEEE-ETTCCCCBCC--------------------------------CCCCSCEEEC-----
T ss_pred ecCCCEEEEeCcccCccCCEEe-cCCCcccccCCCCCCCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCC
Confidence 999999999999 889999999 56666 788899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEE
Q psy12559 398 ETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEF 477 (610)
Q Consensus 398 e~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f 477 (610)
|++|+|||||||||+++||+++||+++.+++|+|+|||||+++++..++|+||+||+||||+|+++++|+++ |.++.|
T Consensus 448 e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~--g~g~~f 525 (691)
T 1dar_A 448 QTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEF 525 (691)
T ss_dssp CEEEEESCCC---------CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCT--TCCEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCC--CCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 678999
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhh
Q psy12559 478 IDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDN 557 (610)
Q Consensus 478 ~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e 557 (610)
+++++|+.+|++|++||++||+||+++||||||||+||+|+|+|+++|++||++++|+.|+++|++++..+|.+ .++|
T Consensus 526 ~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~--~llE 603 (691)
T 1dar_A 526 VNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDP--VILE 603 (691)
T ss_dssp EECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCC--EEEE
T ss_pred eecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCC--EEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 6999
Q ss_pred HHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 558 FSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 558 ~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
|++.+++.+|++++++++.|++.||++|.+|..
T Consensus 604 Pi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~ 636 (691)
T 1dar_A 604 PIMRVEVTTPEEYMGDVIGDLNARRGQILGMEP 636 (691)
T ss_dssp EEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEEEcHHHHhHHHHHHHHCCceeeccee
Confidence 999999999999999999999999999999853
No 5
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.8e-104 Score=898.57 Aligned_cols=554 Identities=27% Similarity=0.443 Sum_probs=532.9
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|++++|++||||+.+...++.|+++.+||+|||||.||..++.++++.+|++++|+|+.+|++.||+.+|+++.+.++|
T Consensus 49 ~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip 128 (665)
T 2dy1_A 49 TDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128 (665)
T ss_dssp SCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+|+||||+. .+++++++++++.++ ++.+.++|++.+.++.|++|++.+++|+|+. |. +...++|+++.+.+..
T Consensus 129 ~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~ 203 (665)
T 2dy1_A 129 RMVVVTKLDKG-GDYYALLEDLRSTLG-PILPIDLPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQR 203 (665)
T ss_dssp EEEEEECGGGC-CCHHHHHHHHHHHHC-SEEECEEEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHH
T ss_pred EEEEecCCchh-hhHHHHHHHHHHHhC-CcceEEeeecCCCcccchhhhhhhheeecCC--Cc-eeEecCCHHHHHHHHH
Confidence 99999999999 999999999999999 8999999999999999999999999999975 43 6778899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
.|++|+|.+++.||+++++|+++.+++.+++..++++.+..++++|+|++||++|.|++.||++|++++|+|.+..
T Consensus 204 ~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~---- 279 (665)
T 2dy1_A 204 FRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF---- 279 (665)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997431
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
+++|++++|||++.+++ |+++++|||||+|++||+|++.+ +.++|++|+.++|++..++++
T Consensus 280 ----------------~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~ 341 (665)
T 2dy1_A 280 ----------------GDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEE 341 (665)
T ss_dssp ----------------CSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESC
T ss_pred ----------------CCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCE
Confidence 46899999999999998 99999999999999999999987 678999999999999999999
Q ss_pred ccCCCEEEEcCC-CcccCceEecCCCCc--cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCC
Q psy12559 320 VLAGDIFALFGV-DCASGDTFVTDKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPES 396 (610)
Q Consensus 320 a~aGdiv~i~gl-~~~~Gdtl~~~~~~~--~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~et 396 (610)
|.|||||++.|+ ++++||||+ +...+ ..++++.++.|+++++|+|.+++|.+||.++|++|.+|||++++..|++|
T Consensus 342 a~aG~iv~i~gl~~~~~Gdtl~-~~~~~~~~~l~~~~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et 420 (665)
T 2dy1_A 342 AEAGFVLGVPKAEGLHRGMVLW-QGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEET 420 (665)
T ss_dssp EETTCEEEESSCTTCCTTCEEE-SSSCCCGGGSCCCCCCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTT
T ss_pred ECCCCEEEEeCCccCccCCEEe-cCCCccccccCCCCCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCC
Confidence 999999999999 889999999 56666 78889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcE
Q psy12559 397 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 476 (610)
Q Consensus 397 ge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~ 476 (610)
||++|+|||||||||+++||+ +||+++.+++|+|+|||||+++++..++|+||+||+||||+|+++++|++ ++.
T Consensus 421 ~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~ 494 (665)
T 2dy1_A 421 GELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYG 494 (665)
T ss_dssp CCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCE
T ss_pred CCEEEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC-----CCE
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999986 689
Q ss_pred EEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchh
Q psy12559 477 FIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRD 556 (610)
Q Consensus 477 f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~ 556 (610)
|.+++.||.+|++|++||++||+||+++||||||||+||+|+|+|+++|++||++++|+.|++.|++++..++.+ .++
T Consensus 495 f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p--~ll 572 (665)
T 2dy1_A 495 FEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHP--VLL 572 (665)
T ss_dssp EEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCE--EEE
T ss_pred EeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCC--EEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred hHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 557 NFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 557 e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
||++.+++.+|++++++++.|++.||++|.+|..
T Consensus 573 EPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~ 606 (665)
T 2dy1_A 573 EPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQ 606 (665)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred eeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEe
Confidence 9999999999999999999999999999999863
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1e-109 Score=937.31 Aligned_cols=526 Identities=23% Similarity=0.368 Sum_probs=488.0
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||+|||||+|+.++|.|++++|||||||||+||+.||.+||+++|+||+||||++||++||+++|++|.++++|
T Consensus 42 ~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp 121 (638)
T 3j25_A 42 TDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121 (638)
T ss_dssp TTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS
T ss_pred cCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+|||||||.++++.+++++|+++|+.+++..+.. + .|....... .
T Consensus 122 ~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~-----------~-------~~~~~~~~~-----~---------- 168 (638)
T 3j25_A 122 TIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV-----------E-------LYPNVCVTN-----F---------- 168 (638)
T ss_dssp CEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC-----------C-------SCGGGCCCC-----C----------
T ss_pred eEEEEeccccccCCHHHHHHHHHHHhCCCcccccee-----------E-------eeccccccc-----c----------
Confidence 999999999999999999999999999776543321 1 111000000 0
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
.+.++.+.+++.||+++++|+++..++..++...++..+..+.++|||||||++|.|+++|||+|++++|+|.+.
T Consensus 169 ~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~----- 243 (638)
T 3j25_A 169 TESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR----- 243 (638)
T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG-----
T ss_pred chhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccccCcccc-----
Confidence 013456888899999999999999999999999999999999999999999999999999999999999999754
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
.++||+++|||+.+|++ |+++|+|||||+|++||+|++.+.+ ++++.+++.++|+++.++++
T Consensus 244 ----------------~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~ 306 (638)
T 3j25_A 244 ----------------GPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDR 306 (638)
T ss_dssp ----------------SCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCT
T ss_pred ----------------hhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc-ceeEEeeecccccccccccc
Confidence 56899999999999998 9999999999999999999887654 57899999999999999999
Q ss_pred ccCCCEEEEcCCCcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCCCcE
Q psy12559 320 VLAGDIFALFGVDCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKET 399 (610)
Q Consensus 320 a~aGdiv~i~gl~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~etge~ 399 (610)
+.||||+++.|..+++|+|++ +...++.++.+.+|+|+++++|+|.+++|.+||.++|++|++|||+++++.|++|||+
T Consensus 307 a~aGdIv~i~g~~~~~~~tl~-d~~~~~~~~~i~~p~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~ 385 (638)
T 3j25_A 307 AYSGEIVILQNEFLKLNSVLG-DTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEI 385 (638)
T ss_dssp TBCCCCSCCCSSSCSSEECSS-SSSSGGGCSCCCCCCCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCC
T ss_pred cccceEEEEeccccccCceec-CCCCcccccCccCCCccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceE
Confidence 999999999987888999999 6777788888999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcEEEe
Q psy12559 400 LVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFID 479 (610)
Q Consensus 400 il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~ 479 (610)
+|+|||||||||+++||+++||+++.+++|+|+|||||+++++ ++|++|+||++||++|+++++|++. ++++.|++
T Consensus 386 il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~--~~g~~f~~ 461 (638)
T 3j25_A 386 ILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAE--YTIHIEVPPNPFWASIGLSVSPLPL--GSGMQYES 461 (638)
T ss_dssp CCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCE--ECCCCCSSSCCCCCCCCEECCCCCS--SCCCCCCC
T ss_pred EEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccce--EEEEEecCCCCceEEEEEEEecccC--CCCcEEEe
Confidence 9999999999999999999999999999999999999998865 6789999999999999999999975 67899999
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcceeeeeecccccchhhHH
Q psy12559 480 ETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPVVSMSIKAVNNKDRDNFS 559 (610)
Q Consensus 480 ~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~~~~~v~a~~~~~~~e~~ 559 (610)
++.++.+|++|++||++||+||+++| ||||||+||+|+|.|+++|++||++++|+.|++.|++++..+|.| .++||+
T Consensus 462 ~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p--~LLEPi 538 (638)
T 3j25_A 462 SVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGT--ELLEPY 538 (638)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCC--BCCCCC
T ss_pred eeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEcCc
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999987 699999
Q ss_pred HHhchhccccceEeEEEeCCCCceEEEecc
Q psy12559 560 KAVQRFTKEDPTFHFFYDPESKETLVSGMG 589 (610)
Q Consensus 560 ~~l~~l~~edp~~~v~~d~~t~~~~I~gmg 589 (610)
+.+++.+|+|++++++.|++.||++|.+|.
T Consensus 539 ~~veI~vP~~~~G~V~~~L~~RRG~i~~~~ 568 (638)
T 3j25_A 539 LSFKIYAPQEYLSRAYNDAPKYCANIVDTQ 568 (638)
T ss_dssp TTCEEEEETTTHHHHHHHHHHTTCCCCCCC
T ss_pred EEEEEEECHHHHHHHHHHHHhCCcEEeCeE
Confidence 999999999999999999999999998875
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=8e-96 Score=846.08 Aligned_cols=566 Identities=23% Similarity=0.307 Sum_probs=474.6
Q ss_pred CCChHHHHHhcceeecceeEEEec----------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK----------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ 64 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~----------------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~ 64 (610)
+|++++|++|||||+++.+++.|+ ++.+||||||||.||..++.++++.+|+||+|+|+++|++
T Consensus 57 ~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~ 136 (842)
T 1n0u_A 57 TDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC 136 (842)
T ss_dssp ----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC
T ss_pred ecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC
Confidence 588999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCeEEEEecccCCC----CC-------HHHHHHHHHHHhC-----------CCeeEeeccccCCCC
Q psy12559 65 SQTLTVNRQMKRYDVPCIAFINKLDRLG----AD-------PYRVINQMRQKVG-----------HNAAFLQIPIGLGSE 122 (610)
Q Consensus 65 ~qt~~v~~~~~~~~ip~i~~iNKiDr~~----~~-------~~~~~~~i~~~l~-----------~~~~~~~~p~~~~~~ 122 (610)
.||+.+|+++...++|+|+|+||||+.. .+ +.+.+++++..++ ..+.+.++|++++
T Consensus 137 ~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa-- 214 (842)
T 1n0u_A 137 VQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSG-- 214 (842)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEET--
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeec--
Confidence 9999999999999999999999999972 23 4555666666652 4444556676554
Q ss_pred eeEEEE------------------cccceeE---eecCCCCCceEeecCc-------hhHHHHHHHHHHHHHHHHhcCCH
Q psy12559 123 TKGIID------------------LIQRKAI---YFEGPLGDNLRIEEIP-------ADLKKEAESKRQELIEHVAEGDE 174 (610)
Q Consensus 123 ~~g~~d------------------~~~~~~~---~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~l~e~~~~~dd 174 (610)
..||.+ .+.++.| +|+.+ |..+...++| ..|.+++.++|.+|+|++++.||
T Consensus 215 ~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~-~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~ 293 (842)
T 1n0u_A 215 LHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK-TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKK 293 (842)
T ss_dssp TTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETT-TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCT
T ss_pred ccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCC-CCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCH
Confidence 334433 3334444 66543 4445544444 36888899999999999999999
Q ss_pred HHHHhhhcC--CCCCHHHHH---HHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccccccc--Cc---
Q psy12559 175 ILGEMFLEE--KSISEDDIK---KAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIEN--GQ--- 244 (610)
Q Consensus 175 ~l~e~~l~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~--~~--- 244 (610)
++|++||++ ..++.+++. ..|++.+ +++|+|+ +++|||+|++++|+|.+.+.++... .+
T Consensus 294 ~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~ 362 (842)
T 1n0u_A 294 DEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKFLPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPAD 362 (842)
T ss_dssp THHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHHSBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTT
T ss_pred HHHHHHHHHcCCCCCHHHHhhhhHHHHHHH-Hhhccch----------HHHHHHHHHHhCCChhHhcccccccccCCccc
Confidence 999999986 578888887 8888888 7789998 6899999999999998765332211 11
Q ss_pred -ccceeecCCCCCCCCCeEEEEEEEEeeCC-cc-EEEEEEEeceecCCCEEE------ecCCCe---EEEeceEEEeccC
Q psy12559 245 -EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQ-LTYMRCYQGKLRKGEMIY------NVRTDK---KVRVSRLVRLHSN 312 (610)
Q Consensus 245 -~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-i~~~RV~sG~l~~g~~v~------~~~~~~---~~~v~~i~~~~g~ 312 (610)
.....+..|+ +++||+++|||+..+++ |+ ++|+|||||+|++||+|+ |.++++ .++|++|+.++|+
T Consensus 363 ~~~~~~~~~~~--~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~ 440 (842)
T 1n0u_A 363 DANCIAIKNCD--PKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGR 440 (842)
T ss_dssp SHHHHHHHTTC--TTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETT
T ss_pred ccccceeeccC--CCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccC
Confidence 1123456788 89999999999999988 96 999999999999999994 444445 6899999999999
Q ss_pred cccccCcccCCCEEEEcCC-CcccC-ceEecCCCCccccccccCC-CceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeE
Q psy12559 313 EMEDVEEVLAGDIFALFGV-DCASG-DTFVTDKNNSISLESIYVA-DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFH 389 (610)
Q Consensus 313 ~~~~v~~a~aGdiv~i~gl-~~~~G-dtl~~~~~~~~~~~~~~~~-~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~ 389 (610)
+++++++|.|||||+|.|+ ++.+| +||| +...+..++++.++ .|+++++|+|++++|++||.++|++|++|||+|+
T Consensus 441 ~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~-~~~~~~~l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~ 519 (842)
T 1n0u_A 441 FVEPIDDCPAGNIIGLVGIDQFLLKTGTLT-TSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVL 519 (842)
T ss_dssp EEEEESEEETTCEEEEESCTTTCCSSEEEE-SCTTCCCBCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCE
T ss_pred cccccceeCCCCEEEEEccccceecceeec-CCCCccccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999 66443 5999 66677788888888 5999999999999999999999999999999999
Q ss_pred EEEcCCCCcEEEEEechhhHHHHHHHHhhhc-ccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCC
Q psy12559 390 FFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLP 468 (610)
Q Consensus 390 ~~~d~etge~il~g~GelhLei~~~~L~~~~-~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~ 468 (610)
++.| +|||++|+|||||||||+++||+++| |+++.+++|+|+|||||+++++..+..+.+ +.|.++++++||++
T Consensus 520 v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~~~~~~~~~~~~~----~~~~~v~~~~ePl~ 594 (842)
T 1n0u_A 520 TYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSP----NKHNRIYLKAEPID 594 (842)
T ss_dssp EEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEESSCCSSCEEEECT----TSSCEEEEEEEECC
T ss_pred EEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeeccccccceeeccC----CcceEEEEEEEECc
Confidence 9998 89999999999999999999999999 999999999999999999988765443322 23458999999986
Q ss_pred C-------------------------------------------CCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcC
Q psy12559 469 P-------------------------------------------SANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKG 505 (610)
Q Consensus 469 ~-------------------------------------------~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~G 505 (610)
+ +.+++|.|+|.++|+++|++|++||++||+||+++|
T Consensus 595 ~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G 674 (842)
T 1n0u_A 595 EEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEG 674 (842)
T ss_dssp HHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcC
Confidence 3 112579999999999999999999999999999999
Q ss_pred CccCCceeeeEEEEecCcccCCCCc--hhHHhhhccCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCce
Q psy12559 506 CLSGSRVAGVRMVLKDGDNHMVDSN--EISFILAAHDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKET 583 (610)
Q Consensus 506 pl~g~pv~~v~v~l~~~~~h~~ds~--~~~f~~a~~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~ 583 (610)
|||||||+||+|+|+|+++|..++. +++|+.|+++|++++..+|.| .++||++.+++.+|+|.+++++.|++.||+
T Consensus 675 ~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p--~LLEPi~~veI~vP~e~~G~V~~dL~~RRG 752 (842)
T 1n0u_A 675 PIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADP--KIQEPVFLVEIQCPEQAVGGIYSVLNKKRG 752 (842)
T ss_dssp TTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCE--EEEEEEEEEEEEECGGGHHHHHHHHHTTTC
T ss_pred CcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCC--eEEeeEEEEEEEccHHHHHHHHHHHHhcCc
Confidence 9999999999999999999964333 677999999999999999997 699999999999999999999999999999
Q ss_pred EEEeccH
Q psy12559 584 LVSGMGE 590 (610)
Q Consensus 584 ~I~gmge 590 (610)
+|.+|..
T Consensus 753 ~i~~~~~ 759 (842)
T 1n0u_A 753 QVVSEEQ 759 (842)
T ss_dssp EEEEEEC
T ss_pred EEecccc
Confidence 9998763
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=2.8e-92 Score=779.88 Aligned_cols=437 Identities=24% Similarity=0.418 Sum_probs=358.1
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
||++++||||||||+|+.++|.|++++|||||||||+||+.||+++|+++|+||+||||++||++||+++|++|.++++|
T Consensus 75 ~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp 154 (548)
T 3vqt_A 75 SDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP 154 (548)
T ss_dssp -------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC
T ss_pred cCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHH-HHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKK-EAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~ 159 (610)
+|+|||||||.++++.+++++|+++|+.++.++|+|++.++.|.|++|+++++++.|++..+.............+ ...
T Consensus 155 ~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (548)
T 3vqt_A 155 VMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLD 234 (548)
T ss_dssp EEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHH
T ss_pred eEEEEecccchhcchhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998766544322221111100 000
Q ss_pred HHHHHHHHHHhcCCHHHHHhhh-cCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCcccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFL-EEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY 238 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l-~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~ 238 (610)
+......+.. +..++.+. .+..... +.++.+.++|||||||++|.|+++|||+|++++|+|.+.+..
T Consensus 235 ~~~~~~~~~~----~~~~~l~~~~~~~~~~--------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~ 302 (548)
T 3vqt_A 235 EYLGDQAEQL----RMDLALLEEAGTPFDE--------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAA 302 (548)
T ss_dssp HHHGGGHHHH----HHHHHHHHHHCCCCCH--------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBS
T ss_pred HHHHHHHHHh----hhHHHHHhhccCchhH--------HHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccc
Confidence 0000000000 00111111 1112222 234578999999999999999999999999999999865422
Q ss_pred ccccCcccceeecCCCCCCCCCeEEEEEEEEee---CC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 239 AIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG---KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~---~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
. ....+ .++||+++|||+..+ ++ |+++|+|||||+|++|++|+|.++++++++++++.++|+++
T Consensus 303 ~---------~~~~~---~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~ 370 (548)
T 3vqt_A 303 T---------RVVEP---GEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDR 370 (548)
T ss_dssp S---------SEECT---TCSSCEEEEEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSC
T ss_pred c---------cccCC---CCcCceEEEEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccc
Confidence 1 01111 468999999999987 66 99999999999999999999999999999999999999999
Q ss_pred cccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEc
Q psy12559 315 EDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYD 393 (610)
Q Consensus 315 ~~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d 393 (610)
+++++|.|||||+|.|+ ++.+||||| +...+..++++.++.|+++++|+|++++|.+||.++|++|+++||+ ++..|
T Consensus 371 ~~v~~a~AGdIvai~gl~~~~~GDTl~-~~~~~~~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~ 448 (548)
T 3vqt_A 371 TGVEEAFPGDIIGIPNHGTIKIGDTFT-ESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRP 448 (548)
T ss_dssp CSSCEECTTCEEEEECSSCCCTTCEEE-SSSSCCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEE
T ss_pred cccCEEecCCEEEecCCccCccCCEec-CCCCccccCCCCCCCCcceeeeeeCCchhHHHHHHHHHHhhhcCce-eEEEE
Confidence 99999999999999999 899999999 6777788889999999999999999999999999999999999985 56678
Q ss_pred CCCCcEEEEEechhhHHHHHHHHhhhcccceE-----ecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEE
Q psy12559 394 PESKETLVSGMGELHLEIYAQRMEREYNCPVV-----LGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGT 463 (610)
Q Consensus 394 ~etge~il~g~GelhLei~~~~L~~~~~v~v~-----~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~ 463 (610)
++|||++|+|||||||||+++||+++|||++. ++.|+|+|||||++.++++++||+|+||++||+.|++.
T Consensus 449 ~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~ 523 (548)
T 3vqt_A 449 LVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLA 523 (548)
T ss_dssp SSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEe
Confidence 99999999999999999999999999999865 68899999999999999999999999999999999874
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.3e-72 Score=620.57 Aligned_cols=415 Identities=26% Similarity=0.432 Sum_probs=343.2
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|+++.|++||+|+.++...+.|+++.+||||||||.||..++.++++.+|++|+|+|+.+|++.||+.+|+++...++|
T Consensus 57 ~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip 136 (529)
T 2h5e_A 57 SDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP 136 (529)
T ss_dssp -------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC
T ss_pred eccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe-ecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI-EEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 159 (610)
+++|+||||+..+++.++++++++.|+..+.++++|++++..+.|+.|++++.++.|....|..... .++| .+.+.
T Consensus 137 iivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~-~~~~~-- 213 (529)
T 2h5e_A 137 ILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVK-GLNNP-- 213 (529)
T ss_dssp EEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEEC-CSSCH--
T ss_pred EEEEEcCcCCccccHHHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCC-CCCHH--
Confidence 9999999999999999999999999999999999999999999999999999999996533432111 2233 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
.|.+. .++.+++.|+++.++..+++...+++.+..+.++|||||||++|.||++||++|++++|+|.+++..
T Consensus 214 ----~l~e~---~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~- 285 (529)
T 2h5e_A 214 ----DLDAA---VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD- 285 (529)
T ss_dssp ----HHHHH---HCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-
T ss_pred ----HHHHh---hCHHHHHHhhcccchhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCccccc-
Confidence 12222 2677888887765444444334456677889999999999999999999999999999999865320
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEe--e-CC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCccc
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEA--G-KF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEME 315 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~-~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~ 315 (610)
.....+ .++||+++|||+.. | ++ |+++|+||+||+|++||+|++.++++.++|++++.++|.+++
T Consensus 286 --------~~~~~~---~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~ 354 (529)
T 2h5e_A 286 --------TRTVEA---SEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRS 354 (529)
T ss_dssp --------SCEECT---TCCSCEEEEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC----
T ss_pred --------ccccCC---CCCCeEEEEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCce
Confidence 001112 26899999999986 3 55 999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcC
Q psy12559 316 DVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDP 394 (610)
Q Consensus 316 ~v~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~ 394 (610)
++++|.||||+++.|+ ++++||||| +.. +..++++.++.|+++++|+|+++.|.+||.++|++|++||| +++..|+
T Consensus 355 ~v~~a~aGdiv~i~~l~~~~~Gdtl~-~~~-~~~~~~~~~~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~ 431 (529)
T 2h5e_A 355 HVEEAYPGDILGLHNHGTIQIGDTFT-QGE-MMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPI 431 (529)
T ss_dssp -CCEECTTCEEEECCSSCCCTTCEEE-SSC-CCCBCCCEEECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEET
T ss_pred EcceECCCCEEEEeccCCCccCCEee-cCC-ccccCCCCCCCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeC
Confidence 9999999999999999 899999999 444 56788888899999999999999999999999999999998 8899999
Q ss_pred CCCcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeeccc
Q psy12559 395 ESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQP 440 (610)
Q Consensus 395 etge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~ 440 (610)
+|||++|+|||||||||+++||+++||+++.+++|+|+|||||...
T Consensus 432 ~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 432 SNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECA 477 (529)
T ss_dssp TSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCCCSEEEEEECS
T ss_pred CCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCceeEEEEEcCC
Confidence 9999999999999999999999999999999999999999999654
No 10
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=2.3e-72 Score=617.77 Aligned_cols=414 Identities=26% Similarity=0.428 Sum_probs=359.1
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
|+++.|++||+|+.++...+.|+++.+||||||||.||..++.++++.+|+||+|+|+..|++.||+.+|+++...++|+
T Consensus 58 d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi 137 (528)
T 3tr5_A 58 DWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI 137 (528)
T ss_dssp HHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE
T ss_pred ccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHH
Q psy12559 82 IAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESK 161 (610)
Q Consensus 82 i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 161 (610)
++|+||||+.++++.+.++++++.++..+.++++|++.+..|.|++|+++++++.|+...+......++++++.+. ..
T Consensus 138 ivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 215 (528)
T 3tr5_A 138 MTFINKMDRDTRPSIELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNP--EL 215 (528)
T ss_dssp EEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCH--HH
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchH--HH
Confidence 9999999999999999999999999999999999999999999999999999999976555443333444433221 12
Q ss_pred HHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccc
Q psy12559 162 RQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIE 241 (610)
Q Consensus 162 ~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~ 241 (610)
++.|.+. +++|+++.++..+......++.+..+.++||||+||++|.||++||++|++++|+|.+.....
T Consensus 216 ~~~l~~~--------~~~~~e~~~l~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-- 285 (528)
T 3tr5_A 216 DKKLGDL--------ASELRNEIELVKGASHPFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-- 285 (528)
T ss_dssp HHHHTHH--------HHHHHHHHHHHHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS--
T ss_pred HHHHHHH--------HHHHhhhcchhhhhhhHHHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc--
Confidence 2222221 344544322222221112266778899999999999999999999999999999998654210
Q ss_pred cCcccceeecCCCCCCCCCeEEEEEEEEe--eC-C-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCccccc
Q psy12559 242 NGQEDKKVVLNPSRDGKHPFIALAFKLEA--GK-F-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDV 317 (610)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--~~-~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v 317 (610)
....+ .++||+++|||+.+ |+ + |+++|+|||||+|++||.|++.++++.+++++++.++|++++++
T Consensus 286 -------~~~~~---~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v 355 (528)
T 3tr5_A 286 -------RLVKP---EEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENA 355 (528)
T ss_dssp -------SCBCT---TSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCC
T ss_pred -------eeeCC---CcccceeEEEEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeEC
Confidence 11111 36899999999986 77 7 99999999999999999999999999999999999999999999
Q ss_pred CcccCCCEEEEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCeeEEEEcCCC
Q psy12559 318 EEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPES 396 (610)
Q Consensus 318 ~~a~aGdiv~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDpsl~~~~d~et 396 (610)
++|.||||+++.|+ ++++||||| + ..+..+.++..+.|+++++|+|+++.|.+||..||++|++|||+ ++..|++|
T Consensus 356 ~~a~aGdI~~~~~l~~~~~GDtl~-~-~~~~~~~~~~~~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~ 432 (528)
T 3tr5_A 356 EEAWPGDIIGLHNHGTIQIGDTFT-Q-GERFKFTGIPNFASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDS 432 (528)
T ss_dssp SEECTTCEEEEEESSSCCTTCEEE-S-SCCCCBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTC
T ss_pred CEECCCCEEEEcCCCCCccCCEEc-C-CCCcccCCCCCCCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCC
Confidence 99999999999999 899999999 4 44567778888899999999999999999999999999999997 78889999
Q ss_pred CcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeeccc
Q psy12559 397 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQP 440 (610)
Q Consensus 397 ge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~ 440 (610)
||++|+|||||||||+++||+++||+++.+++|.|+|+++|...
T Consensus 433 ~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 433 NELILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp CCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSCCEEEEEECS
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCceEEEEEecCC
Confidence 99999999999999999999999999999999999999999764
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.8e-63 Score=551.16 Aligned_cols=378 Identities=26% Similarity=0.422 Sum_probs=321.7
Q ss_pred CCChHHHHHhcceeecceeEEEecC-----eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKD-----HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~-----~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|+++.|++|||||+++.+++.|+. +.+||||||||.||..++.++++.+|+||+|+|+++|++.||..+|.++.
T Consensus 43 ~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~ 122 (600)
T 2ywe_A 43 LDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV 122 (600)
T ss_dssp -------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred cccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence 5889999999999999999999963 89999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
..++|+|+|+||||+..++++++.+++++.++.++
T Consensus 123 ~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~--------------------------------------------- 157 (600)
T 2ywe_A 123 EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDP--------------------------------------------- 157 (600)
T ss_dssp HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCG---------------------------------------------
T ss_pred HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCc---------------------------------------------
Confidence 99999999999999998888877777776654210
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCc
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 235 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~ 235 (610)
.+++++||++|.|+++|+++|++++|+|...
T Consensus 158 -------------------------------------------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~ 188 (600)
T 2ywe_A 158 -------------------------------------------------EEAILASAKEGIGIEEILEAIVNRIPPPKGD 188 (600)
T ss_dssp -------------------------------------------------GGCEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred -------------------------------------------------ccEEEEEeecCCCchHHHHHHHHhccccccc
Confidence 1357889999999999999999999998632
Q ss_pred cccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
+++|+.++||+++.+++ |+++++||++|++++||.|++.++++..++.+++.+.+ +.
T Consensus 189 ---------------------~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~-~~ 246 (600)
T 2ywe_A 189 ---------------------PQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTP-KM 246 (600)
T ss_dssp ---------------------TTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESS-SE
T ss_pred ---------------------ccCCcceeEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCC-Cc
Confidence 67899999999999998 99999999999999999999999999999999998876 47
Q ss_pred cccCcccCCCEEEE-cCC----CcccCceEecCCCCc--cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCe
Q psy12559 315 EDVEEVLAGDIFAL-FGV----DCASGDTFVTDKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 387 (610)
Q Consensus 315 ~~v~~a~aGdiv~i-~gl----~~~~Gdtl~~~~~~~--~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDps 387 (610)
.+++++.|||++++ .|+ ++++||||+ ...++ ..++++..++|+++++++|.+++|.++|.++|++|.+|||+
T Consensus 247 ~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~-~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~s 325 (600)
T 2ywe_A 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTIT-HAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAA 325 (600)
T ss_dssp EEESCEETTCEEEEESSCCCTTSSCTTCEEE-ESSSCCSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSS
T ss_pred eECCEEecCceeeeeccccchhhccCCCEEE-eCCCccccccCCCCCCCcEEEEEeeccccccHHHHHHHHHHHhhhCCE
Confidence 89999999999987 454 789999999 45554 46888899999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcEEEEE-----echhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEE
Q psy12559 388 FHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIG 462 (610)
Q Consensus 388 l~~~~d~etge~il~g-----~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~ 462 (610)
|+++ ++|+|.+++| ||||||||+++||+++||+++.+++|+|+|||||++. | +
T Consensus 326 l~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~V~yreti~~~------------g--~------ 383 (600)
T 2ywe_A 326 IVYE--PESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFT------------D--E------ 383 (600)
T ss_dssp CEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECEEEEETTC------------S--S------
T ss_pred EEEE--ECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeeeEEEEEEecCC------------C--c------
Confidence 9987 4788877777 9999999999999999999999999999999999751 1 1
Q ss_pred EEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcc
Q psy12559 463 TLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPV 542 (610)
Q Consensus 463 ~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~ 542 (610)
.+.|.+ | +|+|+.| + ++
T Consensus 384 -----------~~~~~~--------------------------p-~~~p~~~----------~-----~~---------- 400 (600)
T 2ywe_A 384 -----------VIEVRN--------------------------P-MDFPDNA----------G-----LI---------- 400 (600)
T ss_dssp -----------CEEESS--------------------------G-GGSCSCG----------G-----GE----------
T ss_pred -----------EEEEeC--------------------------h-hhCCCCC----------c-----cc----------
Confidence 112221 2 6688776 1 11
Q ss_pred eeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 543 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 543 ~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
..++||++.+++.+|+|++++++.|.+.||+.+.+|..
T Consensus 401 ----------~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~ 438 (600)
T 2ywe_A 401 ----------EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTY 438 (600)
T ss_dssp ----------EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred ----------ccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEE
Confidence 14889999999999999999999999999999999864
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1.5e-61 Score=537.03 Aligned_cols=376 Identities=28% Similarity=0.398 Sum_probs=316.0
Q ss_pred CCChHHHHHhcceeecceeEEEec-----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
+|++++|++|||||++..+++.|+ ++.+||||||||.||..++.++++.+|+||+|+|+++|++.||+.+|.++.
T Consensus 41 ~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~ 120 (599)
T 3cb4_D 41 LDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120 (599)
T ss_dssp ----------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred cccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 588999999999999999999997 389999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHH
Q psy12559 76 RYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLK 155 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~ 155 (610)
..++|+|+|+||||+..++++++.+++++.++.++
T Consensus 121 ~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~--------------------------------------------- 155 (599)
T 3cb4_D 121 EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA--------------------------------------------- 155 (599)
T ss_dssp HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC---------------------------------------------
T ss_pred HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc---------------------------------------------
Confidence 99999999999999999888888887777665220
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCc
Q psy12559 156 KEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEV 235 (610)
Q Consensus 156 ~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~ 235 (610)
.+++++||++|.|++.|+++|.+++|+|...
T Consensus 156 -------------------------------------------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~ 186 (599)
T 3cb4_D 156 -------------------------------------------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGD 186 (599)
T ss_dssp -------------------------------------------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCC
T ss_pred -------------------------------------------------ceEEEeecccCCCchhHHHHHhhcCCCcccc
Confidence 1257789999999999999999999999632
Q ss_pred cccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcc
Q psy12559 236 TNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEM 314 (610)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~ 314 (610)
+++|+.++||+++.+++ |+++++||++|+|++||++.+.++++.+++.+++.+.+. .
T Consensus 187 ---------------------~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~ 244 (599)
T 3cb4_D 187 ---------------------PEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-Q 244 (599)
T ss_dssp ---------------------TTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-E
T ss_pred ---------------------ccCCceeeeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCC-c
Confidence 67899999999999998 999999999999999999999999999999999988875 7
Q ss_pred cccCcccCCCEEEE-cCC----CcccCceEecCCCCc--cccccccCCCceEEEEEEeCCCcCHHHHHHHHHHHHhcCCe
Q psy12559 315 EDVEEVLAGDIFAL-FGV----DCASGDTFVTDKNNS--ISLESIYVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPT 387 (610)
Q Consensus 315 ~~v~~a~aGdiv~i-~gl----~~~~Gdtl~~~~~~~--~~~~~~~~~~Pv~~~aiep~~~~d~~kL~~~L~~L~~eDps 387 (610)
.+++++.|||++++ .|+ ++++||||+ +..++ ..++.+..+.|+++++++|.+..|.++|.++|.+|.++||+
T Consensus 245 ~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~-~~~~~~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~s 323 (599)
T 3cb4_D 245 VDRTELKCGEVGWLVCAIKDIHGAPVGDTLT-LARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDAS 323 (599)
T ss_dssp EECSEECTTCEEEEECCCSSGGGSCTTCEEE-ESSSCCSSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSS
T ss_pred eECCEEcCCCeeEeeccccccccCccCCEee-ecCCccccccccccCCCcceEEEEEecCccCHHHHHHHHHHHHhhCcE
Confidence 88999999999987 454 689999999 55554 56788889999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcEEEEE-----echhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEE
Q psy12559 388 FHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIG 462 (610)
Q Consensus 388 l~~~~d~etge~il~g-----~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~ 462 (610)
|++. ++|+|.++.| ||+|||||+++||+++||+++.+++|+|+|||||++.
T Consensus 324 l~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V~yreti~~g---------------------- 379 (599)
T 3cb4_D 324 LFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSR---------------------- 379 (599)
T ss_dssp CEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEECEEEEESSS----------------------
T ss_pred EEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeEEEEEEecCC----------------------
Confidence 9987 5789887777 9999999999999999999999999999999998741
Q ss_pred EEEeCCCCCCCCcEEEeccccCCCCcchHHHHHHHHHHHHHcCCccCCceeeeEEEEecCcccCCCCchhHHhhhccCcc
Q psy12559 463 TLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAAHDPV 542 (610)
Q Consensus 463 ~~ePl~~~~~~~~~f~~~~~g~~~~~~~~~av~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~h~~ds~~~~f~~a~~~~~ 542 (610)
+++.|.+ |. ++|.. ++
T Consensus 380 ----------~~~~~~~-------p~--------------------~~p~~-----------~~---------------- 395 (599)
T 3cb4_D 380 ----------EVIYVDS-------PS--------------------KLPAV-----------NN---------------- 395 (599)
T ss_dssp ----------CEEEESS-------GG--------------------GSCCG-----------GG----------------
T ss_pred ----------ceEEecC-------hh--------------------hCCCc-----------cc----------------
Confidence 1233442 11 22321 00
Q ss_pred eeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccH
Q psy12559 543 VSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGE 590 (610)
Q Consensus 543 ~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge 590 (610)
...++||++.+++.+|+++++.++.+.+.||+.+.+|..
T Consensus 396 ---------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~ 434 (599)
T 3cb4_D 396 ---------IYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVY 434 (599)
T ss_dssp ---------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEC
T ss_pred ---------cchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEe
Confidence 014889999999999999999999999999999999964
No 13
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.8e-33 Score=312.49 Aligned_cols=298 Identities=21% Similarity=0.253 Sum_probs=229.1
Q ss_pred hcceeecceeEEEec-----------C-------eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH
Q psy12559 10 RGITIQSAATYTLWK-----------D-------HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 71 (610)
Q Consensus 10 RgiTi~s~~~~~~~~-----------~-------~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~ 71 (610)
+|||.+.....+.|. + ..++|||||||.+|..++.++++.+|++|+|+|+.+|+++||...|
T Consensus 36 ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l 115 (594)
T 1g7s_A 36 GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL 115 (594)
T ss_dssp --CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH
T ss_pred CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH
Confidence 688888877777653 1 2599999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCc
Q psy12559 72 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 151 (610)
Q Consensus 72 ~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~ 151 (610)
+++...++|+|+|+||||+.... ....+ .+++
T Consensus 116 ~~l~~~~vPiIVViNKiDl~~~~-------------------------------------------~~~~~-----~~~~ 147 (594)
T 1g7s_A 116 NILRMYRTPFVVAANKIDRIHGW-------------------------------------------RVHEG-----RPFM 147 (594)
T ss_dssp HHHHHTTCCEEEEEECGGGSTTC-------------------------------------------CCCTT-----CCHH
T ss_pred HHHHHcCCeEEEEeccccccccc-------------------------------------------ccccC-----CchH
Confidence 99999999999999999997421 00000 0111
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCC
Q psy12559 152 ADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 231 (610)
Q Consensus 152 ~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPs 231 (610)
+.........++.+.+.+++.++.|++.+++.+... .++ ..+..+|++++||++|.|++.|+++|..++|+
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~------~l~---~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD------RVT---DFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGG------GCS---CTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHH------HHH---hccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 222222234556666777777777877776542110 010 12467899999999999999999999999886
Q ss_pred CCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEE--EeceEEE
Q psy12559 232 PGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKV--RVSRLVR 308 (610)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~--~v~~i~~ 308 (610)
|.+.. +.++ +++|+.++|++++.+++ |+++++||++|+|++||.|++.+.+..+ +|++|+.
T Consensus 219 ~~~~~--------------l~~~--~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~ 282 (594)
T 1g7s_A 219 YLREQ--------------LKIE--EDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLK 282 (594)
T ss_dssp HCSGG--------------GEEC--TTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEE
T ss_pred cchhh--------------hccc--cCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEe
Confidence 65321 1112 67899999999999998 9999999999999999999998877644 9999998
Q ss_pred ec--------cCcccccCccc--CCCEEEEcCC-CcccCceEecCCCCcc--------ccccccCCCceEEEEEEeCCCc
Q psy12559 309 LH--------SNEMEDVEEVL--AGDIFALFGV-DCASGDTFVTDKNNSI--------SLESIYVADPVVSMSIKAVNNK 369 (610)
Q Consensus 309 ~~--------g~~~~~v~~a~--aGdiv~i~gl-~~~~Gdtl~~~~~~~~--------~~~~~~~~~Pv~~~aiep~~~~ 369 (610)
+. +.+..++++|. +|+++++.|+ ++.+||||+. ..+.. .+..+.+..+.+.+.|.+...+
T Consensus 283 ~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~g 361 (594)
T 1g7s_A 283 PRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRV-VTDPEKVREEILSEIEDIKIDTDEAGVVVKADTLG 361 (594)
T ss_dssp ECCCC----CCCSEEECSEEESSEEEEEECSSCTTBCTTCEEEE-CSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSHH
T ss_pred ccccchhhhccCCceEccEEcCCCCcEEEEcccCCCCCCCEEEe-cCCHHHHHHHHHHHHHhcccccccccEEEEeCCCC
Confidence 73 66788899998 9999999999 8899999994 33221 1223344456778899999999
Q ss_pred CHHHHHHHHHHH
Q psy12559 370 DRDNFSKAVQRF 381 (610)
Q Consensus 370 d~~kL~~~L~~L 381 (610)
..+.|.++|+++
T Consensus 362 s~eal~~~l~~~ 373 (594)
T 1g7s_A 362 SLEAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHHHT
T ss_pred CHHHHHHHHHhC
Confidence 999999999998
No 14
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.98 E-value=1.1e-31 Score=287.59 Aligned_cols=230 Identities=27% Similarity=0.411 Sum_probs=188.6
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|.+++|++||+|++.+...+.++++.++|||||||.+|..++.++++.+|++|+|+|+.+|+..||+++|..+...++|
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip 129 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
+++++||||+.. +. +.++.+.+
T Consensus 130 ~iivviNK~Dl~~-~~-~~~~~~~~------------------------------------------------------- 152 (405)
T 2c78_A 130 YIVVFMNKVDMVD-DP-ELLDLVEM------------------------------------------------------- 152 (405)
T ss_dssp CEEEEEECGGGCC-CH-HHHHHHHH-------------------------------------------------------
T ss_pred EEEEEEECccccC-cH-HHHHHHHH-------------------------------------------------------
Confidence 689999999874 21 11111110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCcc------------------HHHH
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKG------------------VQTL 221 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~g------------------v~~L 221 (610)
++...+...-.....+|++++||++|.| +..|
T Consensus 153 ------------------------------~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~L 202 (405)
T 2c78_A 153 ------------------------------EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWEL 202 (405)
T ss_dssp ------------------------------HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHH
Confidence 0001111100011236888889999987 8899
Q ss_pred HHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC--
Q psy12559 222 LDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD-- 298 (610)
Q Consensus 222 ld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~-- 298 (610)
+++|.+++|.|... .++|+.+.|.+++.+++ |++++|||++|+|++||.|.+.+.+
T Consensus 203 l~~l~~~lp~p~~~---------------------~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~ 261 (405)
T 2c78_A 203 LDAIDEYIPTPVRD---------------------VDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPE 261 (405)
T ss_dssp HHHHHHHSCCCCCC---------------------CSSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSS
T ss_pred HHHHHhhcCCCCCC---------------------CCCCcEEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCC
Confidence 99999999988521 57899999999999988 9999999999999999999998876
Q ss_pred -eEEEeceEEEeccCcccccCcccCCCEEEEc--CC---CcccCceEecCC
Q psy12559 299 -KKVRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV---DCASGDTFVTDK 343 (610)
Q Consensus 299 -~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--gl---~~~~Gdtl~~~~ 343 (610)
...+|++|... ..++++|.|||++++. |+ ++..||+|+ ++
T Consensus 262 ~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~-~~ 307 (405)
T 2c78_A 262 TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLA-KP 307 (405)
T ss_dssp CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEE-ST
T ss_pred eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEE-cC
Confidence 57889998743 4679999999999864 65 789999999 44
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=9.9e-32 Score=286.95 Aligned_cols=227 Identities=26% Similarity=0.349 Sum_probs=185.1
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC-
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP- 80 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip- 80 (610)
|.+++|++||+||+.+...+.++++.++|||||||.+|..++.++++.+|++|+|+|+.+|+..||+++|..+...++|
T Consensus 42 d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~ 121 (397)
T 1d2e_A 42 DNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEH 121 (397)
T ss_dssp HSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCC
T ss_pred hcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCe
Confidence 5567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+++||||+.. + .+.++.+.+
T Consensus 122 iivviNK~Dl~~-~-~~~~~~~~~-------------------------------------------------------- 143 (397)
T 1d2e_A 122 VVVYVNKADAVQ-D-SEMVELVEL-------------------------------------------------------- 143 (397)
T ss_dssp EEEEEECGGGCS-C-HHHHHHHHH--------------------------------------------------------
T ss_pred EEEEEECcccCC-C-HHHHHHHHH--------------------------------------------------------
Confidence 579999999874 2 111111110
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCc---------c-HHHHHHHHHHhCC
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNK---------G-VQTLLDAVLDYLP 230 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~---------g-v~~Lld~i~~~lP 230 (610)
++.+.++..-.....+|++++||++|. | +..|+++|.+++|
T Consensus 144 -----------------------------~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 144 -----------------------------EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -----------------------------HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----------------------------HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 011111111011123688899999966 4 8999999999999
Q ss_pred CCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC--eEEEeceEE
Q psy12559 231 NPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLV 307 (610)
Q Consensus 231 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~i~ 307 (610)
.|... .++|+.+.|++++.+++ |++++|||++|+|++||.|++.+.+ ...+|++|.
T Consensus 195 ~p~~~---------------------~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~ 253 (397)
T 1d2e_A 195 VPTRD---------------------LEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIE 253 (397)
T ss_dssp CCCCC---------------------TTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred CCCCC---------------------CCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEE
Confidence 88532 57899999999999988 9999999999999999999987764 677899986
Q ss_pred EeccCcccccCcccCCCEEEEc--CC---CcccCceEe
Q psy12559 308 RLHSNEMEDVEEVLAGDIFALF--GV---DCASGDTFV 340 (610)
Q Consensus 308 ~~~g~~~~~v~~a~aGdiv~i~--gl---~~~~Gdtl~ 340 (610)
.. ..++++|.|||++++. |+ +++.||+|+
T Consensus 254 ~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~ 287 (397)
T 1d2e_A 254 MF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMA 287 (397)
T ss_dssp ET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred EC----CcccCEecCCCceEEEecccchhccCceeEEe
Confidence 43 3678999999999864 66 789999999
No 16
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=1.5e-30 Score=280.89 Aligned_cols=233 Identities=21% Similarity=0.278 Sum_probs=185.6
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-------hhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-------SQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-------~qt~~v~~~ 73 (610)
+|..++||+|||||+.+...+.++++.++|||||||.+|...+.++++.+|++|+|||+.+|+. .||++++..
T Consensus 70 ~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~ 149 (439)
T 3j2k_7 70 LDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML 149 (439)
T ss_pred hccchhHhhcCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999986 799999999
Q ss_pred HHhcCCC-eEEEEecccCCCCCHHH-HHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCc
Q psy12559 74 MKRYDVP-CIAFINKLDRLGADPYR-VINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 151 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~~~~~~-~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~ 151 (610)
+...++| +|+++||||+...++.+ .++.+.+.+
T Consensus 150 ~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~--------------------------------------------- 184 (439)
T 3j2k_7 150 AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKL--------------------------------------------- 184 (439)
T ss_pred HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHH---------------------------------------------
Confidence 9999999 78999999997544321 111111110
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHh-hhcCceeEEEeccccCCccHHHHHH-------
Q psy12559 152 ADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS-TLTRKFTPVLVGTALKNKGVQTLLD------- 223 (610)
Q Consensus 152 ~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~-~~~~~~~Pv~~~Sa~~~~gv~~Lld------- 223 (610)
...++.. ......+|+++.||++|.|+..+++
T Consensus 185 ----------------------------------------~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g 224 (439)
T 3j2k_7 185 ----------------------------------------VPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIG 224 (439)
T ss_pred ----------------------------------------HHHHHHhcccccCCeeEEEeeccCCcccccccccccccCc
Confidence 0000000 0001246888889999999998433
Q ss_pred ----HHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCe
Q psy12559 224 ----AVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDK 299 (610)
Q Consensus 224 ----~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~ 299 (610)
.+.+.+|.|... .++|+.+.|..++. ..|+++.|||.+|+|++||.|.+.+.+.
T Consensus 225 ~~L~~~l~~i~~~~~~---------------------~~~p~r~~v~~~~~-~~G~v~~G~v~~G~l~~Gd~v~~~p~~~ 282 (439)
T 3j2k_7 225 LPFIPYLDNLPNFNRS---------------------VDGPIRLPIVDKYK-DMGTVVLGKLESGSIFKGQQLVMMPNKH 282 (439)
T ss_pred hHHHHHHHhCCCCccC---------------------CCCCeEEEEEEEEc-CCCeEEEEEEEeeEEecCCEEEEccCCc
Confidence 234456655321 57899999998875 2499999999999999999999999999
Q ss_pred EEEeceEEEeccCcccccCcccCCCEEE--EcCC---CcccCceEecCCCC
Q psy12559 300 KVRVSRLVRLHSNEMEDVEEVLAGDIFA--LFGV---DCASGDTFVTDKNN 345 (610)
Q Consensus 300 ~~~v~~i~~~~g~~~~~v~~a~aGdiv~--i~gl---~~~~Gdtl~~~~~~ 345 (610)
..+|++|+. ...++++|.|||.|+ +.|+ +++.||+|+ ++++
T Consensus 283 ~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~-~~~~ 328 (439)
T 3j2k_7 283 NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILC-DPSN 328 (439)
T ss_pred eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEec-CCCC
Confidence 999999874 466899999999999 6787 688999999 5443
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.97 E-value=1e-30 Score=282.34 Aligned_cols=228 Identities=24% Similarity=0.259 Sum_probs=173.8
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-------cchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-------v~~qt~~v~~~ 73 (610)
+|++++|++||+||+.+...+.|+++.++|||||||.+|..++.++++.+|++|+|+|+.+| +..||++++..
T Consensus 59 ~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~ 138 (435)
T 1jny_A 59 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIIL 138 (435)
T ss_dssp HHHHHHC-----------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHH
T ss_pred hccChHHHhcCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHhcCCC-eEEEEecccCCCCCH-----HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEe
Q psy12559 74 MKRYDVP-CIAFINKLDRLGADP-----YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRI 147 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~~~~-----~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~ 147 (610)
+...++| +|+++||||+...++ +.+.+++++.
T Consensus 139 ~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~------------------------------------------ 176 (435)
T 1jny_A 139 AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF------------------------------------------ 176 (435)
T ss_dssp HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHH------------------------------------------
Confidence 9999986 789999999986432 1112222111
Q ss_pred ecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH--------
Q psy12559 148 EEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ-------- 219 (610)
Q Consensus 148 ~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~-------- 219 (610)
++..-.....+|++..||++|.|+.
T Consensus 177 -----------------------------------------------~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~ 209 (435)
T 1jny_A 177 -----------------------------------------------MRSYGFNTNKVRFVPVVAPSGDNITHKSENMKW 209 (435)
T ss_dssp -----------------------------------------------HHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTT
T ss_pred -----------------------------------------------HHHcCCCcCCceEEEeecccCcccccccccccc
Confidence 1110000112678888999999986
Q ss_pred ----HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEe
Q psy12559 220 ----TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYN 294 (610)
Q Consensus 220 ----~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~ 294 (610)
.|+++|.. +|+|... .++|+.+.|..++..++ |++++|||++|+|++||.|++
T Consensus 210 ~~g~~Ll~~l~~-~~~p~~~---------------------~~~~~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~ 267 (435)
T 1jny_A 210 YNGPTLEEYLDQ-LELPPKP---------------------VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVF 267 (435)
T ss_dssp CCSCCHHHHHTT-CCCCCCG---------------------GGSCCBEEEEEEEEETTTEEEEEEECCBSCEETTCEEEE
T ss_pred ccchhHHHHHhc-cCCCCCC---------------------CCCCeEEEEEEEEEeCCCcEEEEEEEecCeEEcCCEEEE
Confidence 68898755 4545421 35677778888888888 999999999999999999999
Q ss_pred cCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEecCCC
Q psy12559 295 VRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 344 (610)
Q Consensus 295 ~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~~ 344 (610)
.+.+...+|++|... ..++++|.|||+|++ .|+ ++++||+|+ ++.
T Consensus 268 ~p~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~-~~~ 317 (435)
T 1jny_A 268 MPAGKVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVG-HPN 317 (435)
T ss_dssp ETTTEEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCEEE-CTT
T ss_pred CCceeEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccEec-CCC
Confidence 999999999999742 568999999999987 455 789999999 443
No 18
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.97 E-value=5.2e-30 Score=270.10 Aligned_cols=218 Identities=11% Similarity=0.042 Sum_probs=177.3
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEe-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFIN- 86 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iN- 86 (610)
+|||||+.+...+.|++++++|||||||.||..++.++++.+|+||+||| .+|+..||+++|..+...++|. |+++|
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNN 121 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTR 121 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999 9999999999999999999999 99999
Q ss_pred cccCCCCC-HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHH
Q psy12559 87 KLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQEL 165 (610)
Q Consensus 87 KiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 165 (610)
|||+ ..+ .+++.+++++.++..
T Consensus 122 K~Dl-~~~~~~~~~~~i~~~l~~~-------------------------------------------------------- 144 (370)
T 2elf_A 122 SDST-HMHAIDELKAKLKVITSGT-------------------------------------------------------- 144 (370)
T ss_dssp GGGS-CHHHHHHHHHHHHHHTTTS--------------------------------------------------------
T ss_pred ccCC-CHHHHHHHHHHHHHHHHhc--------------------------------------------------------
Confidence 9998 422 122223333322100
Q ss_pred HHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEe--ccccC---CccHHHHHHHHHHhCCCCCCcccccc
Q psy12559 166 IEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLV--GTALK---NKGVQTLLDAVLDYLPNPGEVTNYAI 240 (610)
Q Consensus 166 ~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~--~Sa~~---~~gv~~Lld~i~~~lPsp~~~~~~~~ 240 (610)
....+|+++ +||++ +.|+++|++.|.+++|+|.....
T Consensus 145 -----------------------------------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~~~~~~--- 186 (370)
T 2elf_A 145 -----------------------------------VLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAENA--- 186 (370)
T ss_dssp -----------------------------------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHHHHHHH---
T ss_pred -----------------------------------CCCceEEEecccccccCcCCCCHHHHHHHHHhhccccccCCc---
Confidence 012468999 99999 99999999999999987621100
Q ss_pred ccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCc
Q psy12559 241 ENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEE 319 (610)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~ 319 (610)
+. ...|+.++|..++..++ |+++++||++|++++||+|++.+.+...+|++|... ..++++
T Consensus 187 ------------~~--~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~ 248 (370)
T 2elf_A 187 ------------EL--NSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSH----DVDIDS 248 (370)
T ss_dssp ------------HG--GGSCCEEEEEEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEET----TEEESE
T ss_pred ------------cc--ccccccccceeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEEC----CCCccE
Confidence 00 13456666777777777 999999999999999999999999999999999643 368999
Q ss_pred ccCCCEEEEc--CC---CcccCceEe
Q psy12559 320 VLAGDIFALF--GV---DCASGDTFV 340 (610)
Q Consensus 320 a~aGdiv~i~--gl---~~~~Gdtl~ 340 (610)
|.|||++++. |+ ++++||+|+
T Consensus 249 a~aGd~v~i~l~gv~~~~i~~Gdvl~ 274 (370)
T 2elf_A 249 APAGTRVGMRLKNVQAKDIERGFIIS 274 (370)
T ss_dssp EETTCEEEEEEESCCGGGCCTTCEEE
T ss_pred EcCCCcceEEEeccCHHHcCCceEEE
Confidence 9999999875 65 789999999
No 19
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.97 E-value=1.3e-29 Score=291.61 Aligned_cols=231 Identities=23% Similarity=0.346 Sum_probs=176.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|.+++|++|||||+.+.+.+.++++.++|||||||.+|...+.++++.+|++|+|||+.+|+..||+++|..+...++|
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP 413 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 413 (1289)
T ss_dssp --------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCS
T ss_pred cccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 -CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 -~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+++||||+.. + .+.++.+.+
T Consensus 414 ~IIVVINKiDLv~-d-~e~le~i~e------------------------------------------------------- 436 (1289)
T 3avx_A 414 YIIVFLNKCDMVD-D-EELLELVEM------------------------------------------------------- 436 (1289)
T ss_dssp CEEEEEECCTTCC-C-HHHHHHHHH-------------------------------------------------------
T ss_pred eEEEEEeeccccc-c-hhhHHHHHH-------------------------------------------------------
Confidence 589999999874 2 111111110
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCC--------ccHHHHHHHHHHhCCC
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKN--------KGVQTLLDAVLDYLPN 231 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~--------~gv~~Lld~i~~~lPs 231 (610)
++...+...-.....+|++.+||++| .|+..|+++|.+++|.
T Consensus 437 ------------------------------Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 437 ------------------------------EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp ------------------------------HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ------------------------------HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 00111111001112468899999999 6899999999999998
Q ss_pred CCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCC--eEEEeceEEE
Q psy12559 232 PGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTD--KKVRVSRLVR 308 (610)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~--~~~~v~~i~~ 308 (610)
|... .++|+.+.|..++.+++ |++++|||++|+|++||+|.+.+.+ ...+|++|..
T Consensus 487 P~r~---------------------~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~ 545 (1289)
T 3avx_A 487 PERA---------------------IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEM 545 (1289)
T ss_dssp CCCG---------------------GGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEEC
T ss_pred Cccc---------------------cccceeeeccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEee
Confidence 7532 56889999999999888 9999999999999999999988776 6788999863
Q ss_pred eccCcccccCcccCCCEEEE--cCC---CcccCceEecCCC
Q psy12559 309 LHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKN 344 (610)
Q Consensus 309 ~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~~ 344 (610)
. ..++++|.|||+|++ .|+ ++..||+|+ ++.
T Consensus 546 ~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~-~~~ 581 (1289)
T 3avx_A 546 F----RKLLDEGRAGENVGVLLRGIKREEIERGQVLA-KPG 581 (1289)
T ss_dssp S----SCEESEEETTCEEEEEESSCCGGGCCTTCEEE-STT
T ss_pred c----CceeeEEecCCcceeEeeecchhcCCcccEEe-cCC
Confidence 2 467899999999876 476 789999999 443
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.96 E-value=2.9e-29 Score=272.95 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=155.3
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
+|.+++||+|||||+.+...+.++++.++|||||||.+|..++.++++.+|++|+|||+.+|+ +.||++++..
T Consensus 96 ~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~ 175 (467)
T 1r5b_A 96 LDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 175 (467)
T ss_dssp -----------------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH
T ss_pred cccchhhhhcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999998 4899999999
Q ss_pred HHhcCCC-eEEEEecccCCCCCH-HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCc
Q psy12559 74 MKRYDVP-CIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 151 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~ 151 (610)
+...++| +|+++||||+...++ ++.++.+...
T Consensus 176 ~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e---------------------------------------------- 209 (467)
T 1r5b_A 176 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDK---------------------------------------------- 209 (467)
T ss_dssp HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHH----------------------------------------------
T ss_pred HHHcCCCEEEEEEECccCCCccccHHHHHHHHHH----------------------------------------------
Confidence 9999998 789999999975432 1111111110
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHh-hhc-CceeEEEeccccCCccHHH---------
Q psy12559 152 ADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRS-TLT-RKFTPVLVGTALKNKGVQT--------- 220 (610)
Q Consensus 152 ~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~-~~~-~~~~Pv~~~Sa~~~~gv~~--------- 220 (610)
+...++.. -.. ..-+|++..||++|.|+..
T Consensus 210 ---------------------------------------~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w 250 (467)
T 1r5b_A 210 ---------------------------------------LSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPW 250 (467)
T ss_dssp ---------------------------------------HHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSS
T ss_pred ---------------------------------------HHHHHHHhcCCCccCCceEEecccccccccccccccccCcc
Confidence 00111100 000 0136788889999999864
Q ss_pred -----HHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEec
Q psy12559 221 -----LLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNV 295 (610)
Q Consensus 221 -----Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~ 295 (610)
|++.| +.+|.|... .++|+.+.|..++.+ .|++++|||.+|+|++||.|.+.
T Consensus 251 ~~g~~L~~~l-~~i~~~~~~---------------------~~~p~~~~v~~~~~~-~G~v~~G~v~~G~l~~gd~v~~~ 307 (467)
T 1r5b_A 251 YQGPSLLEYL-DSMTHLERK---------------------VNAPFIMPIASKYKD-LGTILEGKIEAGSIKKNSNVLVM 307 (467)
T ss_dssp CCSCCHHHHH-HHCCCCHHH---------------------HTSCCEEECCEEEES-SSEEEEEECCBSEEETTEEEEEE
T ss_pred ccchhHHHHH-HhCCCCcCC---------------------CCCCcEEEEEEEEeC-CCeEEEEEEeeeEEeeCCEEEEc
Confidence 45555 457766321 467899999888764 58999999999999999999999
Q ss_pred CCCeEEEeceEEEeccCcccccCcccCCCEEEE--cC-C-CcccCceEecCCC
Q psy12559 296 RTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FG-V-DCASGDTFVTDKN 344 (610)
Q Consensus 296 ~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l-~~~~Gdtl~~~~~ 344 (610)
+.+...+|++|+.. ...++++|.|||.|++ .| . +++.||+|+ ++.
T Consensus 308 p~~~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG~vl~-~~~ 356 (467)
T 1r5b_A 308 PINQTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTGYVLT-STK 356 (467)
T ss_dssp TTTEEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTTCEEE-CSS
T ss_pred cCCeeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCceEEEe-CCC
Confidence 88888899988732 2568999999999987 56 4 789999999 443
No 21
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.7e-30 Score=285.37 Aligned_cols=228 Identities=21% Similarity=0.254 Sum_probs=154.5
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~ 73 (610)
+|.+++|++||||++.....+.++++.++|||||||.+|...+.++++.+|++|+|||+.+|. ..||+.++..
T Consensus 230 ~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~ 309 (592)
T 3mca_A 230 LDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309 (592)
T ss_dssp -----------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHH
T ss_pred hccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999864 9999999999
Q ss_pred HHhcCCC-eEEEEecccCCCCCHH---HHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeec
Q psy12559 74 MKRYDVP-CIAFINKLDRLGADPY---RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEE 149 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~~~~~---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~ 149 (610)
+...++| +|+++||||+...+.+ .+..+++..+.
T Consensus 310 ~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~------------------------------------------ 347 (592)
T 3mca_A 310 LRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLI------------------------------------------ 347 (592)
T ss_dssp HHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred HHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHH------------------------------------------
Confidence 9999998 7889999998764422 22222222220
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH----------
Q psy12559 150 IPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ---------- 219 (610)
Q Consensus 150 ~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~---------- 219 (610)
....+ ....+|++++||++|.|+.
T Consensus 348 --------------------------------~~~g~--------------~~~~~~ii~iSA~~G~gI~e~~~~~~~~w 381 (592)
T 3mca_A 348 --------------------------------KMVGF--------------KTSNVHFVPISAISGTNLIQKDSSDLYKW 381 (592)
T ss_dssp --------------------------------TTSCC--------------CGGGEEEEEECSSSCSSSCSCCCCGGGGT
T ss_pred --------------------------------HhhCC--------------CccceEEEEEecccCcccccccccccccc
Confidence 00000 1123678888999999997
Q ss_pred ----HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEe
Q psy12559 220 ----TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYN 294 (610)
Q Consensus 220 ----~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~ 294 (610)
.|+++|..++| |... .++|+.+.|..++.. + |++++|||.+|+|++||.|.+
T Consensus 382 ~~g~~Lle~l~~~~p-p~~~---------------------~~~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i 438 (592)
T 3mca_A 382 YKGPTLLSALDQLVP-PEKP---------------------YRKPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYD 438 (592)
T ss_dssp CCSCCHHHHHHTSCC-CSCT---------------------TTSCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEE
T ss_pred cchHHHHHHHHhhcc-cccc---------------------ccccchheeeEEEec-CCeEEEEEEEeeeeEccCCEEEE
Confidence 79999999887 3211 578999999999988 6 999999999999999999999
Q ss_pred cCCCeEEEeceEEEeccCcccccC-cccCCCEEE--EcCC---CcccCceEecCCC
Q psy12559 295 VRTDKKVRVSRLVRLHSNEMEDVE-EVLAGDIFA--LFGV---DCASGDTFVTDKN 344 (610)
Q Consensus 295 ~~~~~~~~v~~i~~~~g~~~~~v~-~a~aGdiv~--i~gl---~~~~Gdtl~~~~~ 344 (610)
.+.+...+|++|.. ...+++ +|.|||+|+ +.|+ +++.||+|+ ++.
T Consensus 439 ~p~~~~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~-~~~ 489 (592)
T 3mca_A 439 VSSQEDAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILS-NYE 489 (592)
T ss_dssp TTTTEEEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEE-CSS
T ss_pred ccCCceEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEEEec-cCC
Confidence 99999999999983 356899 999999998 4676 689999999 444
No 22
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.96 E-value=9.4e-29 Score=265.21 Aligned_cols=224 Identities=23% Similarity=0.302 Sum_probs=173.3
Q ss_pred CCChHHHHHhcceeecceeEEEec-----------------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 57 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----------------------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVv 57 (610)
+|..++|++|||||+.+...+.+. .+.++|||||||.+|..++.++++.+|++|+||
T Consensus 35 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 114 (410)
T 1kk1_A 35 TDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVI 114 (410)
T ss_dssp CC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEE
T ss_pred cccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEE
Confidence 367789999999999988776652 278999999999999999999999999999999
Q ss_pred ecCCCc-chhhHHHHHHHHhcCC-CeEEEEecccCCCCCH-HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEccccee
Q psy12559 58 CAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 134 (610)
Q Consensus 58 Da~~Gv-~~qt~~v~~~~~~~~i-p~i~~iNKiDr~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~ 134 (610)
|+.+|+ +.||++++..+...++ |+|+++||||+...+. .+.++++++
T Consensus 115 da~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~------------------------------ 164 (410)
T 1kk1_A 115 AANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKE------------------------------ 164 (410)
T ss_dssp ETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHH------------------------------
T ss_pred ECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHH------------------------------
Confidence 999998 9999999998888887 5678999999874321 111222211
Q ss_pred EeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccC
Q psy12559 135 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALK 214 (610)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~ 214 (610)
|+++. ....+|++++||++
T Consensus 165 ---------------------------------------------~l~~~----------------~~~~~~~i~vSA~~ 183 (410)
T 1kk1_A 165 ---------------------------------------------FIEGT----------------VAENAPIIPISALH 183 (410)
T ss_dssp ---------------------------------------------HHTTS----------------TTTTCCEEECBTTT
T ss_pred ---------------------------------------------HHHhc----------------CcCCCeEEEeeCCC
Confidence 11110 01236888999999
Q ss_pred CccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEee--------CC-ccEEEEEEEece
Q psy12559 215 NKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGK 285 (610)
Q Consensus 215 ~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~--------~~-G~i~~~RV~sG~ 285 (610)
|.|++.|+++|.+++|.|... .+.|+.++|.+.+.. ++ |.+++|||++|+
T Consensus 184 g~gi~~L~~~l~~~~~~p~~~---------------------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~ 242 (410)
T 1kk1_A 184 GANIDVLVKAIEDFIPTPKRD---------------------PNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGK 242 (410)
T ss_dssp TBSHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESC
T ss_pred CCCHHHHHHHHHHhCCCCccc---------------------cCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCe
Confidence 999999999999999988532 567888888887643 34 889999999999
Q ss_pred ecCCCEEEecCCCe------------EEEeceEEEeccCcccccCcccCCCEEEEc-----CC---CcccCceEe
Q psy12559 286 LRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 340 (610)
Q Consensus 286 l~~g~~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~~Gdtl~ 340 (610)
|++||+|.+.+.++ ..+|.+|+ ....++++|.|||++++. ++ ++..|++|+
T Consensus 243 l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~----~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~ 313 (410)
T 1kk1_A 243 LKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQ----AGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVG 313 (410)
T ss_dssp EETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEE----ETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEE
T ss_pred EeeCCEEEECCCCccccccccccccceeEEEEEE----ECCeEecEEcCCCEEEEEEecCcccchhhccceeEEe
Confidence 99999999876432 34666665 235689999999988874 22 567899999
No 23
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.96 E-value=3.6e-28 Score=265.81 Aligned_cols=237 Identities=19% Similarity=0.251 Sum_probs=175.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-------cchhhHHHHHH
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQ 73 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-------v~~qt~~v~~~ 73 (610)
+|..++|++||||++.....+.++++.++|||||||.+|...+.++++.+|++|+|+|+.+| +..||+.++..
T Consensus 86 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~ 165 (483)
T 3p26_A 86 MDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL 165 (483)
T ss_dssp ---------CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHH
T ss_pred hccchhHhhcCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999998 67899999999
Q ss_pred HHhcCCC-eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCch
Q psy12559 74 MKRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPA 152 (610)
Q Consensus 74 ~~~~~ip-~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~ 152 (610)
+...++| +|+++||||+...+. ..++++.+.
T Consensus 166 ~~~~~~~~iIvviNK~Dl~~~~~-~~~~~i~~~----------------------------------------------- 197 (483)
T 3p26_A 166 ASSLGIHNLIIAMNKMDNVDWSQ-QRFEEIKSK----------------------------------------------- 197 (483)
T ss_dssp HHHTTCCCEEEEEECGGGGTTCH-HHHHHHHHH-----------------------------------------------
T ss_pred HHHcCCCcEEEEEECcCcccchH-HHHHHHHHH-----------------------------------------------
Confidence 9998876 789999999875431 111111110
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------
Q psy12559 153 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------ 220 (610)
Q Consensus 153 ~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------ 220 (610)
+...+...-.....+|++..||++|.|+..
T Consensus 198 --------------------------------------~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~ 239 (483)
T 3p26_A 198 --------------------------------------LLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYN 239 (483)
T ss_dssp --------------------------------------HHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCC
T ss_pred --------------------------------------HHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccC
Confidence 001111111111247888899999999863
Q ss_pred ------HHHHHHHhCCC--CCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeC---C-ccEEEEEEEeceecC
Q psy12559 221 ------LLDAVLDYLPN--PGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK---F-GQLTYMRCYQGKLRK 288 (610)
Q Consensus 221 ------Lld~i~~~lPs--p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~-G~i~~~RV~sG~l~~ 288 (610)
+|+.+...+|. |.. ..+.|+.+.|..++..+ + |+++.|||.+|+|++
T Consensus 240 g~~L~~~L~~i~~~~~~~~p~~---------------------~~~~p~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~ 298 (483)
T 3p26_A 240 GPNLMSTLENAAFKISKENEGI---------------------NKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQP 298 (483)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTC---------------------CSSSCCEEEEEEEEC---CCSCCEEEEEEEEESEECT
T ss_pred CCCHHHHHHHHHhhcccccccc---------------------cCCCceEEEEEEEEccCCcCCCceEEEEEEecceEcc
Confidence 45555555554 321 15789999999998875 3 899999999999999
Q ss_pred CCEEEecCCCeEEEeceEEEec----cCcccccCcccCCCEEEE--cCC---CcccCceEecCCCC
Q psy12559 289 GEMIYNVRTDKKVRVSRLVRLH----SNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKNN 345 (610)
Q Consensus 289 g~~v~~~~~~~~~~v~~i~~~~----g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~~~ 345 (610)
||.|.+.+.+...+|++|.... |..+.++++|.|||+|++ .+. +++.||+|+ ++.+
T Consensus 299 gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~~di~rG~vl~-~~~~ 363 (483)
T 3p26_A 299 GESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVDY 363 (483)
T ss_dssp TCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCGGGCCTTCEEE-CTTC
T ss_pred CCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEecccccCCceEEEE-cCCC
Confidence 9999999999999999998653 445688999999999987 443 789999999 5543
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=264.25 Aligned_cols=227 Identities=24% Similarity=0.270 Sum_probs=175.5
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC-
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP- 80 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip- 80 (610)
|.+++|++|||||+.+...+.++++.++|||||||.+|..++.++++.+|++|+|+|+.+|+..||+.++..+...++|
T Consensus 80 d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~ 159 (434)
T 1zun_B 80 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKH 159 (434)
T ss_dssp HHHHC-----CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE
T ss_pred ccChhHHHCCcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCe
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHH
Q psy12559 81 CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAES 160 (610)
Q Consensus 81 ~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (610)
+|+++||+|+...+.+ .++.+.+.
T Consensus 160 iIvviNK~Dl~~~~~~-~~~~i~~~------------------------------------------------------- 183 (434)
T 1zun_B 160 IVVAINKMDLNGFDER-VFESIKAD------------------------------------------------------- 183 (434)
T ss_dssp EEEEEECTTTTTSCHH-HHHHHHHH-------------------------------------------------------
T ss_pred EEEEEEcCcCCcccHH-HHHHHHHH-------------------------------------------------------
Confidence 6889999999864421 11111110
Q ss_pred HHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH------------HHHHHHHh
Q psy12559 161 KRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------LLDAVLDY 228 (610)
Q Consensus 161 ~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------Lld~i~~~ 228 (610)
+...++..-.....+|++..||++|.|+.. |++ +.+.
T Consensus 184 ------------------------------~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~-~l~~ 232 (434)
T 1zun_B 184 ------------------------------YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLME-ILET 232 (434)
T ss_dssp ------------------------------HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTH-HHHH
T ss_pred ------------------------------HHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHH-HHhc
Confidence 000000000001236888899999999886 555 4455
Q ss_pred CCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEE
Q psy12559 229 LPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLV 307 (610)
Q Consensus 229 lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~ 307 (610)
+|.|... .+.|+.+.|..++...+ |+...|||.+|+|++||.|.+.+.++..+|++|.
T Consensus 233 i~~~~~~---------------------~~~~~~~~v~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~ 291 (434)
T 1zun_B 233 VEIASDR---------------------NYTDLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIV 291 (434)
T ss_dssp SCCTTCC---------------------CSSSCEEECCEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEE
T ss_pred CCCcccC---------------------CCCCcEEEEEEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEE
Confidence 6665421 56788888888776655 7888999999999999999999988899999998
Q ss_pred EeccCcccccCcccCCCEEEEcCC---CcccCceEe
Q psy12559 308 RLHSNEMEDVEEVLAGDIFALFGV---DCASGDTFV 340 (610)
Q Consensus 308 ~~~g~~~~~v~~a~aGdiv~i~gl---~~~~Gdtl~ 340 (610)
... .++++|.|||++++.+. +++.||+|+
T Consensus 292 ~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~ 323 (434)
T 1zun_B 292 TFE----GELEQAGPGQAVTLTMEDEIDISRGDLLV 323 (434)
T ss_dssp ETT----EEESEECTTCEEEEEESSCCCCCTTCEEE
T ss_pred EcC----cceeEecCCCEEEEEeCCccccCCccEEE
Confidence 553 47999999999998754 678999999
No 25
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.96 E-value=4e-28 Score=263.35 Aligned_cols=224 Identities=22% Similarity=0.252 Sum_probs=180.7
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcch-------hhHHHHHHH
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQS-------QTLTVNRQM 74 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~-------qt~~v~~~~ 74 (610)
|..++|++|||||+.+...+.++++.++|||||||.+|...+.++++.+|++|+|||+.+|+.. ||+++|..+
T Consensus 61 d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~ 140 (458)
T 1f60_A 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA 140 (458)
T ss_dssp HHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH
T ss_pred ccchhHHhcCcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999866 999999999
Q ss_pred HhcCCC-eEEEEecccCCCCCHH---HHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecC
Q psy12559 75 KRYDVP-CIAFINKLDRLGADPY---RVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEI 150 (610)
Q Consensus 75 ~~~~ip-~i~~iNKiDr~~~~~~---~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~ 150 (610)
...++| +|+++||||+...+.+ ++.+++++.
T Consensus 141 ~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~--------------------------------------------- 175 (458)
T 1f60_A 141 FTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNF--------------------------------------------- 175 (458)
T ss_dssp HHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHH---------------------------------------------
Confidence 999998 7899999998743321 111111111
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHH-----------
Q psy12559 151 PADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQ----------- 219 (610)
Q Consensus 151 ~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~----------- 219 (610)
++..-.....+|++..||++|.|+.
T Consensus 176 --------------------------------------------l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~ 211 (458)
T 1f60_A 176 --------------------------------------------IKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKG 211 (458)
T ss_dssp --------------------------------------------HHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCC
T ss_pred --------------------------------------------HHHcCCCccCceEEEeecccCcCcccccccCchhhc
Confidence 1110000012577778999988875
Q ss_pred -------------HHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEece
Q psy12559 220 -------------TLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGK 285 (610)
Q Consensus 220 -------------~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~ 285 (610)
.|++++.. +|.|... .+.|+.+.|..++..++ |++++|||.+|+
T Consensus 212 ~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~---------------------~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~ 269 (458)
T 1f60_A 212 WEKETKAGVVKGKTLLEAIDA-IEQPSRP---------------------TDKPLRLPLQDVYKIGGIGTVPVGRVETGV 269 (458)
T ss_dssp EEEECSSSEEEESSHHHHHHT-SCCCCCC---------------------TTSCCEEEEEEEEEETTTEEEEEEECCBSC
T ss_pred ccccccccccchHHHHHHhhc-cCCCccc---------------------CCCCcEEEEEEEEEeCCCcEEEEEEEeCCe
Confidence 47777554 4545321 57899999999999988 999999999999
Q ss_pred ecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---CcccCceEe
Q psy12559 286 LRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 286 l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
++.||+|.+.+.+...+|.+|... ..++++|.|||.+++ .|+ +++.||+|+
T Consensus 270 l~~gd~v~~~p~~~~~~V~~i~~~----~~~~~~a~aG~~v~i~l~gi~~~~i~rG~vl~ 325 (458)
T 1f60_A 270 IKPGMVVTFAPAGVTTEVKSVEMH----HEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCG 325 (458)
T ss_dssp BCTTCEEEEETTTEEEEEEEEEET----TEECSCBCTTCEEEEEESSCCTTTSCTTCEEE
T ss_pred EcCCCEEEECCCCceEEEeEEEEC----CeEEEEEcCCCEEEEEEcCCcccccCceeEEe
Confidence 999999999998888999999742 457899999999886 476 789999999
No 26
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.95 E-value=1e-28 Score=269.25 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=169.4
Q ss_pred CCChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
+|..++|++||||++....++.++++.++|+|||||.+|..++.++++.+|++|+|+|+.+|++.||++++..+...++|
T Consensus 48 ~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip 127 (482)
T 1wb1_A 48 HDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 127 (482)
T ss_dssp ----------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred cccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecccCCCCC-HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
.|+++||||+...+ ++++.+++++
T Consensus 128 ~IvviNK~Dl~~~~~~~~~~~~l~~------------------------------------------------------- 152 (482)
T 1wb1_A 128 IIVVITKSDNAGTEEIKRTEMIMKS------------------------------------------------------- 152 (482)
T ss_dssp BCEEEECTTSSCHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred EEEEEECCCcccchhHHHHHHHHHH-------------------------------------------------------
Confidence 99999999987411 1111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
.+... ......|++..||++|.|++.|+++|.+.+|.|....
T Consensus 153 ----------------------------------~l~~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~~~~~--- 194 (482)
T 1wb1_A 153 ----------------------------------ILQST-HNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIR--- 194 (482)
T ss_dssp ----------------------------------HHHHS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHSCCCC---
T ss_pred ----------------------------------HHhhh-cccccceEEEEECcCCCCHHHHHHHHHHhhcCccccc---
Confidence 11110 0001357888899999999999999999887551110
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccC
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVE 318 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~ 318 (610)
..++|+.+.|..++..++ |+++.+||.+|++++||.|.+.+.+...+|+.|.. ...+++
T Consensus 195 ----------------~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~----~~~~v~ 254 (482)
T 1wb1_A 195 ----------------NTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQY----FKESVM 254 (482)
T ss_dssp ----------------CSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCG----GGSCBC
T ss_pred ----------------cccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEE----CCeEee
Confidence 145677777777777777 99999999999999999999998888889998873 346789
Q ss_pred cccCCCEEEE--cCC---CcccCceEe
Q psy12559 319 EVLAGDIFAL--FGV---DCASGDTFV 340 (610)
Q Consensus 319 ~a~aGdiv~i--~gl---~~~~Gdtl~ 340 (610)
+|.|||.+++ .|+ ++..||+|+
T Consensus 255 ~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 255 EAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EecCCCEEEEEecCCCHhhccccceEe
Confidence 9999999876 476 578999994
No 27
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=3.9e-27 Score=252.39 Aligned_cols=226 Identities=19% Similarity=0.226 Sum_probs=164.1
Q ss_pred CCChHHHHHhcceeecceeEEEec-----------------------CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEE
Q psy12559 1 MDSMELERQRGITIQSAATYTLWK-----------------------DHNINIIDTPGHVDFTVEVERALRVLDGAILVL 57 (610)
Q Consensus 1 ~D~~~~E~eRgiTi~s~~~~~~~~-----------------------~~~inlIDTPGh~dF~~ev~~al~~~D~ailVv 57 (610)
+|..++|++|||||+.+...+.+. .+.++|||||||.+|..++.++++.+|++|+|+
T Consensus 33 ~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVv 112 (408)
T 1s0u_A 33 TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVI 112 (408)
T ss_dssp CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEE
T ss_pred cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEE
Confidence 367789999999999886655431 278999999999999999999999999999999
Q ss_pred ecCCCc-chhhHHHHHHHHhcCC-CeEEEEecccCCCCCH-HHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEccccee
Q psy12559 58 CAVGGV-QSQTLTVNRQMKRYDV-PCIAFINKLDRLGADP-YRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKA 134 (610)
Q Consensus 58 Da~~Gv-~~qt~~v~~~~~~~~i-p~i~~iNKiDr~~~~~-~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~ 134 (610)
|+.+|+ +.||.+++..+...++ |+|+++||||+...+. .+.++++++.+.
T Consensus 113 da~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~--------------------------- 165 (408)
T 1s0u_A 113 AANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK--------------------------- 165 (408)
T ss_dssp ETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHT---------------------------
T ss_pred ECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHh---------------------------
Confidence 999998 9999999998888887 5789999999875431 112222222111
Q ss_pred EeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccC
Q psy12559 135 IYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALK 214 (610)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~ 214 (610)
+. ....+|++..||++
T Consensus 166 ------------------------------------------------~~----------------~~~~~~~i~vSA~~ 181 (408)
T 1s0u_A 166 ------------------------------------------------GT----------------IAENAPIIPISAHH 181 (408)
T ss_dssp ------------------------------------------------TS----------------TTTTCCEEEC----
T ss_pred ------------------------------------------------hc----------------CCCCCeEEEeeCCC
Confidence 00 01236788889999
Q ss_pred CccHHHHHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEee--------CC-ccEEEEEEEece
Q psy12559 215 NKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAG--------KF-GQLTYMRCYQGK 285 (610)
Q Consensus 215 ~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~--------~~-G~i~~~RV~sG~ 285 (610)
|.|++.|+++|.+++|.|... .+.|+.++|..++.. ++ |.++.|||.+|+
T Consensus 182 g~gi~~L~~~l~~~i~~~~~~---------------------~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~ 240 (408)
T 1s0u_A 182 EANIDVLLKAIQDFIPTPKRD---------------------PDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGV 240 (408)
T ss_dssp --CHHHHHHHHHHHSCCCCCC---------------------TTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESC
T ss_pred CCCHHHHHHHHHHhCCCCccc---------------------CCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECe
Confidence 999999999999999977421 567889999887743 23 779999999999
Q ss_pred ecCCCEEEecCCCe------------EEEeceEEEeccCcccccCcccCCCEEEEc-----CC---CcccCceEecCC
Q psy12559 286 LRKGEMIYNVRTDK------------KVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFVTDK 343 (610)
Q Consensus 286 l~~g~~v~~~~~~~------------~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~~Gdtl~~~~ 343 (610)
|++||.|.+.+.++ ..+|.+|+. ...++++|.|||.+++. ++ ++..|++|+ .+
T Consensus 241 l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~-~~ 313 (408)
T 1s0u_A 241 FKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----GNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVG-LP 313 (408)
T ss_dssp EETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE----TTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEE-ST
T ss_pred EecCCEEEEcCCcccccccccccccceeEEEEEEE----CCEEcCEEeCCCeEEEEeccCcccchhhccceeEEE-CC
Confidence 99999999875432 568888874 34679999999999983 33 567899999 44
No 28
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-27 Score=266.98 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=184.7
Q ss_pred CChHHHHHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC-------cchhhHHHHHHH
Q psy12559 2 DSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG-------VQSQTLTVNRQM 74 (610)
Q Consensus 2 D~~~~E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G-------v~~qt~~v~~~~ 74 (610)
|..++|++||||++.....+.++++.++|||||||.+|...+.++++.+|++|+|||+.+| +..||+.++..+
T Consensus 221 d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~ 300 (611)
T 3izq_1 221 DQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA 300 (611)
T ss_dssp HHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH
T ss_pred ccchhhhhCCeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999998 578999999999
Q ss_pred HhcCCC-eEEEEecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchh
Q psy12559 75 KRYDVP-CIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPAD 153 (610)
Q Consensus 75 ~~~~ip-~i~~iNKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (610)
...++| +|+++||||+...+. ..++.+.+.
T Consensus 301 ~~lgi~~iIVVvNKiDl~~~~~-~~~~ei~~~------------------------------------------------ 331 (611)
T 3izq_1 301 SSLGIHNLIIAMNKMDNVDWSQ-QRFEEIKSK------------------------------------------------ 331 (611)
T ss_dssp HTTTCCEEEEEEECTTTTTTCH-HHHHHHHHH------------------------------------------------
T ss_pred HHcCCCeEEEEEecccccchhH-HHHHHHHHH------------------------------------------------
Confidence 999987 788999999875331 111111110
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHH-------------
Q psy12559 154 LKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQT------------- 220 (610)
Q Consensus 154 ~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~------------- 220 (610)
+...+...-.....+|++..||++|.|+..
T Consensus 332 -------------------------------------l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g 374 (611)
T 3izq_1 332 -------------------------------------LLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNG 374 (611)
T ss_dssp -------------------------------------HHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCS
T ss_pred -------------------------------------HHHHHHhhcccccCccEEeeecccCCCccccCccccccccccC
Confidence 011111111111246888889999999874
Q ss_pred --HHHHHHHhCCCCCCccccccccCcccceeecCCCCCCCCCeEEEEEEEEeeC---C-ccEEEEEEEeceecCCCEEEe
Q psy12559 221 --LLDAVLDYLPNPGEVTNYAIENGQEDKKVVLNPSRDGKHPFIALAFKLEAGK---F-GQLTYMRCYQGKLRKGEMIYN 294 (610)
Q Consensus 221 --Lld~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~---~-G~i~~~RV~sG~l~~g~~v~~ 294 (610)
|++.+....+.+.... +.+..+.|+.+.|..++..+ + |+++.|||.+|+|++||.|.+
T Consensus 375 ~~L~~~L~~l~~~~p~~~----------------p~~~~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~ 438 (611)
T 3izq_1 375 PNLMSTLENAAFKISKEN----------------EGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTI 438 (611)
T ss_dssp CCHHHHHTTSCCCCCCSS----------------SCCSCCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEE
T ss_pred CcHHHHHHHHhhcccccC----------------cccccccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEE
Confidence 4444433322111000 00116789999999998875 4 899999999999999999999
Q ss_pred cCCCeEEEeceEEEec----cCcccccCcccCCCEEEE--cCC---CcccCceEecCCCC
Q psy12559 295 VRTDKKVRVSRLVRLH----SNEMEDVEEVLAGDIFAL--FGV---DCASGDTFVTDKNN 345 (610)
Q Consensus 295 ~~~~~~~~v~~i~~~~----g~~~~~v~~a~aGdiv~i--~gl---~~~~Gdtl~~~~~~ 345 (610)
.+.+...+|++|.... |..+.++++|.|||+|++ .|+ +++.||+|+ ++.+
T Consensus 439 ~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~di~rGdvl~-~~~~ 497 (611)
T 3izq_1 439 YPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAA-SVDY 497 (611)
T ss_dssp TTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTTSCCTTCEEB-CSTT
T ss_pred ecCCceEEEEEEEEcccccccccccccceecCCCcceEEeeeccHhhCcceEEcc-CCCC
Confidence 9999999999998653 556789999999999997 554 789999999 5443
No 29
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.94 E-value=5.4e-26 Score=243.09 Aligned_cols=217 Identities=19% Similarity=0.221 Sum_probs=168.2
Q ss_pred HHhcceeecceeEEEec-----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-chhhHHHHHHHHhcCC-C
Q psy12559 8 RQRGITIQSAATYTLWK-----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-QSQTLTVNRQMKRYDV-P 80 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~-----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-~~qt~~v~~~~~~~~i-p 80 (610)
..+++++......+.+. .+.++|+|||||.+|...+.++++.+|++|+|+|+.+|. ..||+.++..+...++ |
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ 131 (403)
T 3sjy_A 52 KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKN 131 (403)
T ss_dssp TTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCC
T ss_pred cccceecccccccccccccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCC
Confidence 35566655544433333 279999999999999999999999999999999999998 9999999999998887 7
Q ss_pred eEEEEecccCCCCC-HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHH
Q psy12559 81 CIAFINKLDRLGAD-PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAE 159 (610)
Q Consensus 81 ~i~~iNKiDr~~~~-~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 159 (610)
+|+++||||+...+ ..+.++++++.+.
T Consensus 132 iivviNK~Dl~~~~~~~~~~~~i~~~l~---------------------------------------------------- 159 (403)
T 3sjy_A 132 LIIVQNKVDVVSKEEALSQYRQIKQFTK---------------------------------------------------- 159 (403)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHT----------------------------------------------------
T ss_pred EEEEEECccccchHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 88999999987422 1112222221111
Q ss_pred HHHHHHHHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccc
Q psy12559 160 SKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYA 239 (610)
Q Consensus 160 ~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~ 239 (610)
+ .....+|++..||++|.|++.|+++|.+++|.|...
T Consensus 160 -----------------------~----------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~---- 196 (403)
T 3sjy_A 160 -----------------------G----------------TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD---- 196 (403)
T ss_dssp -----------------------T----------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC----
T ss_pred -----------------------h----------------hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC----
Confidence 0 011236888899999999999999999999887532
Q ss_pred cccCcccceeecCCCCCCCCCeEEEEEEEEe--------eCC-ccEEEEEEEeceecCCCEEEecCCCe-----------
Q psy12559 240 IENGQEDKKVVLNPSRDGKHPFIALAFKLEA--------GKF-GQLTYMRCYQGKLRKGEMIYNVRTDK----------- 299 (610)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~--------~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~----------- 299 (610)
.+.|+.+.|.+++. +++ |.+++|||++|++++||+|.+.+.+.
T Consensus 197 -----------------~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~ 259 (403)
T 3sjy_A 197 -----------------LSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEP 259 (403)
T ss_dssp -----------------TTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEE
T ss_pred -----------------CCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCccccccccccccc
Confidence 56789999998774 233 88999999999999999999976553
Q ss_pred -EEEeceEEEeccCcccccCcccCCCEEEEc-----CC---CcccCceEe
Q psy12559 300 -KVRVSRLVRLHSNEMEDVEEVLAGDIFALF-----GV---DCASGDTFV 340 (610)
Q Consensus 300 -~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl---~~~~Gdtl~ 340 (610)
..+|++|.. ...++++|.|||++++. ++ ++..|++|+
T Consensus 260 ~~~~v~~i~~----~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 260 IFTKISSIRF----GDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEEEEEEEEE----TTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEE
T ss_pred ccEEEEEEEE----CCEEcCEEeCCCEEEEEeccccccchhhhccccEEe
Confidence 467888874 46789999999999983 33 678899999
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.94 E-value=2.8e-28 Score=264.41 Aligned_cols=270 Identities=23% Similarity=0.273 Sum_probs=203.5
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKL 88 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKi 88 (610)
.||||++....++.|+++.++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||..+|+++...++|+|+++|||
T Consensus 34 ~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKi 113 (501)
T 1zo1_I 34 AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKI 113 (501)
T ss_dssp BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECS
T ss_pred CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEec
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHH
Q psy12559 89 DRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEH 168 (610)
Q Consensus 89 Dr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~ 168 (610)
|+..++++++... +.
T Consensus 114 Dl~~~~~~~v~~~----l~------------------------------------------------------------- 128 (501)
T 1zo1_I 114 DKPEADPDRVKNE----LS------------------------------------------------------------- 128 (501)
T ss_dssp SSSTTCCCCTTCC----CC-------------------------------------------------------------
T ss_pred cccccCHHHHHHH----HH-------------------------------------------------------------
Confidence 9986542111000 00
Q ss_pred HhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcccce
Q psy12559 169 VAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQEDKK 248 (610)
Q Consensus 169 ~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~~~~ 248 (610)
...+..+ ..+..+|++++||++|.|++.|+++|......+..
T Consensus 129 --------------~~~~~~~----------~~~~~~~~v~vSAktG~gI~eLle~I~~~~~~~~~-------------- 170 (501)
T 1zo1_I 129 --------------QYGILPE----------EWGGESQFVHVSAKAGTGIDELLDAILLQAEVLEL-------------- 170 (501)
T ss_dssp --------------CCCCCTT----------CCSSSCEEEECCTTTCTTCTTHHHHTTTTCCCSTT--------------
T ss_pred --------------HhhhhHH----------HhCCCccEEEEeeeeccCcchhhhhhhhhhhhhcc--------------
Confidence 0000000 00123789999999999999999999754321110
Q ss_pred eecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEE
Q psy12559 249 VVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFA 327 (610)
Q Consensus 249 ~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~ 327 (610)
..+ ++.|+.+.|++.+.+++ |+++++||++|+|++||.|.+.+. ..+|.. +.+.+..++++|.||+.+.
T Consensus 171 ---~~~--~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~--~~kVr~---i~~~~g~~v~~a~~g~~V~ 240 (501)
T 1zo1_I 171 ---KAV--RKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFE--YGRVRA---MRNELGQEVLEAGPSIPVE 240 (501)
T ss_dssp ---TSC--CCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBS--SCEEEE---ECCTTTTSEEEECCSSCSS
T ss_pred ---ccc--cccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEccc--eeEEEE---EEecCCCcCcEeccCCcEE
Confidence 011 67789999999999988 999999999999999999988542 234444 4444556799999999999
Q ss_pred EcCC-C-cccCceEecCCCC--c---------------------ccccccc--C---CCceEEEEEEeCCCcCHHHHHHH
Q psy12559 328 LFGV-D-CASGDTFVTDKNN--S---------------------ISLESIY--V---ADPVVSMSIKAVNNKDRDNFSKA 377 (610)
Q Consensus 328 i~gl-~-~~~Gdtl~~~~~~--~---------------------~~~~~~~--~---~~Pv~~~aiep~~~~d~~kL~~~ 377 (610)
+.|+ + ...||+++...+. . ..+..+. + ..+.+.+.|.+...+..+.|.++
T Consensus 241 i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ivkad~~gs~ea~~~~ 320 (501)
T 1zo1_I 241 ILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDS 320 (501)
T ss_dssp SEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHHHHHHHSSTTTSCSSCCCCCCCCBCCCSCHHHHHHHHHH
T ss_pred EeCCCCCCCCCCEEEecCCHHHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHhhhhccCCceEEEEEEECCcCCHHHHHHH
Confidence 8898 4 4789999832110 0 0111111 1 23467778888888899999999
Q ss_pred HHHHHhcCCeeEEE
Q psy12559 378 VQRFTKEDPTFHFF 391 (610)
Q Consensus 378 L~~L~~eDpsl~~~ 391 (610)
|.+|..+++.+.+.
T Consensus 321 l~~~~~~~~~~~v~ 334 (501)
T 1zo1_I 321 LLKLSTDEVKVKII 334 (501)
T ss_dssp HTTTTCCCSBCCCC
T ss_pred HHhhcccccceEEE
Confidence 99998877777654
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.92 E-value=1.4e-26 Score=253.06 Aligned_cols=221 Identities=24% Similarity=0.265 Sum_probs=177.3
Q ss_pred HHHhcceeecceeEEEe-cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEE
Q psy12559 7 ERQRGITIQSAATYTLW-KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFI 85 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~-~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~i 85 (610)
+..+|+|++.....+.+ ++..++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||..+|+++...++|+|+++
T Consensus 32 ~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVVi 111 (537)
T 3izy_P 32 MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAI 111 (537)
T ss_dssp SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECC
T ss_pred ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEE
Confidence 34579999999888888 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHH
Q psy12559 86 NKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQEL 165 (610)
Q Consensus 86 NKiDr~~~~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 165 (610)
||+|+..++.++....+... +
T Consensus 112 NKiDl~~~~~~~v~~~l~~~-~---------------------------------------------------------- 132 (537)
T 3izy_P 112 NKCDKAEADPEKVKKELLAY-D---------------------------------------------------------- 132 (537)
T ss_dssp BSGGGTTTSCCSSSSHHHHT-T----------------------------------------------------------
T ss_pred ecccccccchHHHHHHHHhh-h----------------------------------------------------------
Confidence 99999765422111111000 0
Q ss_pred HHHHhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCCccccccccCcc
Q psy12559 166 IEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNYAIENGQE 245 (610)
Q Consensus 166 ~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~~lPsp~~~~~~~~~~~~~ 245 (610)
.+.+ ..+..+|++++||++|.|++.|+++|...++.+...
T Consensus 133 -------------~~~e-----------------~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~---------- 172 (537)
T 3izy_P 133 -------------VVCE-----------------DYGGDVQAVHVSALTGENMMALAEATIALAEMLELK---------- 172 (537)
T ss_dssp -------------SCCC-----------------CSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCC----------
T ss_pred -------------hhHH-----------------hcCCCceEEEEECCCCCCchhHHHHHHHhhhccccc----------
Confidence 0000 011236889999999999999999999887644211
Q ss_pred cceeecCCCCCCCCCeEEEEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCC
Q psy12559 246 DKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGD 324 (610)
Q Consensus 246 ~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGd 324 (610)
.+ ++.|+.+.|++.+.+++ |++++++|.+|+|++||.+... ....+|+.|+...| .++++|.||+
T Consensus 173 -------~~--~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g--~~~~kVr~i~~~~g---~~v~~A~~G~ 238 (537)
T 3izy_P 173 -------AD--PTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG--KSWAKVRLMFDENG---RAVNEAYPSM 238 (537)
T ss_dssp -------CC--SSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS--SCCEEEEEEEECCC---CCSCCSCCST
T ss_pred -------CC--CCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC--CceEEEEEEEcCCC---CCCcEEcCCC
Confidence 11 67899999999999988 9999999999999999998543 23467777764443 5799999999
Q ss_pred EEEEcCC-C-cccCceEe
Q psy12559 325 IFALFGV-D-CASGDTFV 340 (610)
Q Consensus 325 iv~i~gl-~-~~~Gdtl~ 340 (610)
+|+|.|+ + ...||+|+
T Consensus 239 ~V~i~g~~~~~~~Gd~l~ 256 (537)
T 3izy_P 239 PVGIIGWRDLPSAGDEIL 256 (537)
T ss_dssp TCCCCSSEEEEEEESSCC
T ss_pred EEEEECCCCCCCCCCEEE
Confidence 9999999 5 47899999
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.89 E-value=1.1e-24 Score=220.55 Aligned_cols=141 Identities=22% Similarity=0.353 Sum_probs=97.8
Q ss_pred EEcCC-CcccCceEecCCCCccccccccCCCceEEEEEEeCCC----cC-----HHHHHHHHHHHHhcCCeeEEEEcCCC
Q psy12559 327 ALFGV-DCASGDTFVTDKNNSISLESIYVADPVVSMSIKAVNN----KD-----RDNFSKAVQRFTKEDPTFHFFYDPES 396 (610)
Q Consensus 327 ~i~gl-~~~~Gdtl~~~~~~~~~~~~~~~~~Pv~~~aiep~~~----~d-----~~kL~~~L~~L~~eDpsl~~~~d~et 396 (610)
+++|+ ++++||||| +..++..++++.+++|+++++|+|++. .| ..+|.++|.+|.++||+|+++.|+++
T Consensus 2 av~Gl~~~~iGDTl~-~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t 80 (332)
T 3e3x_A 2 NATGLGELKISDTIC-AQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDP 80 (332)
T ss_dssp ----------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSST
T ss_pred CccCCCCCccCCEEc-CCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCC
Confidence 57788 899999999 677778899999999999999999987 65 67999999999999999999999999
Q ss_pred CcEEEEEechhhHHHHHHHHhhhcccceEecCceeEEEEeecccceeeeeeeeccCCCCccEEEEEEEEeCCCCCCCCcE
Q psy12559 397 KETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLE 476 (610)
Q Consensus 397 ge~il~g~GelhLei~~~~L~~~~~v~v~~s~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~ 476 (610)
++++++|||||||||+++||+++ |+++.+++|+|+|||| . | ..+||.. .
T Consensus 81 ~~~~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt-~-------------G---------~llEPi~-------~ 129 (332)
T 3e3x_A 81 DKFRVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE-D-------------G---------QLMEPFE-------T 129 (332)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE-T-------------T---------EEEEEEE-------E
T ss_pred CeEEEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE-C-------------C---------EEECcEE-------E
Confidence 99999999999999999999999 9999999999999998 1 1 3567852 1
Q ss_pred EEeccccCCCCcchHHHHHHHHHHHHHcCC
Q psy12559 477 FIDETVGTNVPKPFLPAIIKGFKQMCEKGC 506 (610)
Q Consensus 477 f~~~~~g~~~~~~~~~av~~g~~~a~~~Gp 506 (610)
+. -.+|.+|..+|..-+. -++|-
T Consensus 130 v~-----I~vPee~~G~Vm~~L~--~RRG~ 152 (332)
T 3e3x_A 130 VT-----IDVMEEHQGGIMENIG--LRXGE 152 (332)
T ss_dssp EE-----EEEEGGGHHHHHHHHH--HTTCE
T ss_pred EE-----EEECHHHHHHHHHHHH--hhccc
Confidence 11 2367888888877654 35564
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=2.8e-14 Score=152.12 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=71.1
Q ss_pred HHHHHhcceeecceeEEEecCe-eEEEecCCCCcCcHH-------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 5 ELERQRGITIQSAATYTLWKDH-NINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 5 ~~E~eRgiTi~s~~~~~~~~~~-~inlIDTPGh~dF~~-------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
..+..+|+|++.....+.+.+. .++|||||||.||.. .+...++.+|++|+|+|+ +...+++.+++.+.+
T Consensus 61 ~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~ 138 (423)
T 3qq5_A 61 IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE 138 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH
T ss_pred ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh
Confidence 4567899999999999999876 999999999999853 356778889999999999 899999999999999
Q ss_pred cCCCeEEEEecccCCCCC
Q psy12559 77 YDVPCIAFINKLDRLGAD 94 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~~~ 94 (610)
.++|+|+|+||+|+...+
T Consensus 139 ~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 139 MEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp TTCCEEEECCCCTTTTCC
T ss_pred cCCCEEEEEeCcCCCCcc
Confidence 999999999999998554
No 34
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.47 E-value=2.6e-13 Score=139.37 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=71.7
Q ss_pred hcceeecceeEEEec-CeeEEEecCCCCcCcH----------HHHHHHHhhcCEEEEEEecCCCcchhhHHH-HHHHHhc
Q psy12559 10 RGITIQSAATYTLWK-DHNINIIDTPGHVDFT----------VEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~-~~~inlIDTPGh~dF~----------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v-~~~~~~~ 77 (610)
.+.|.......+.++ +++++|+||||+.++. ..+..+++.+|++++|+|+.++...++..+ ++++...
T Consensus 42 ~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~ 121 (308)
T 3iev_A 42 AGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL 121 (308)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG
T ss_pred CCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc
Confidence 456666666677788 9999999999997754 678889999999999999999999999998 7788888
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++++||+|+.
T Consensus 122 ~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 122 NKPVIVVINKIDKI 135 (308)
T ss_dssp CCCEEEEEECGGGS
T ss_pred CCCEEEEEECccCC
Confidence 99999999999986
No 35
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.45 E-value=4e-13 Score=137.38 Aligned_cols=81 Identities=25% Similarity=0.224 Sum_probs=69.7
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcC--------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVD--------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPC 81 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~d--------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~ 81 (610)
.|.......+.+++.+++|+||||+.+ |...+..+++.+|++++|+|+..+.+.+++.+++++.+. ++|+
T Consensus 41 tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ 120 (301)
T 1wf3_A 41 TTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI 120 (301)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE
T ss_pred ceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE
Confidence 343333334568899999999999988 778889999999999999999999999999999998887 8999
Q ss_pred EEEEecccCCC
Q psy12559 82 IAFINKLDRLG 92 (610)
Q Consensus 82 i~~iNKiDr~~ 92 (610)
|+|+||+|+..
T Consensus 121 ilV~NK~Dl~~ 131 (301)
T 1wf3_A 121 LLVGNKLDAAK 131 (301)
T ss_dssp EEEEECGGGCS
T ss_pred EEEEECcccCC
Confidence 99999999874
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=7.5e-13 Score=143.46 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=70.2
Q ss_pred HhcceeecceeEEEecCeeEEEecCCC----------CcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPG----------HVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPG----------h~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
..|+|.++....+.+++..++|||||| +..|... ...+++.+|++|+|+|+.+|+..|+..++.++...
T Consensus 226 ~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~ 305 (456)
T 4dcu_A 226 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 305 (456)
T ss_dssp ------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence 458899998899999999999999999 4556554 44588999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+|+++||+|+..
T Consensus 306 ~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 306 GKAVVIVVNKWDAVD 320 (456)
T ss_dssp TCEEEEEEECGGGSC
T ss_pred CCCEEEEEEChhcCC
Confidence 999999999999874
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.39 E-value=8.3e-13 Score=128.47 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=64.7
Q ss_pred hcceeecceeEEE-ecCeeEEEecCCCCcC----------cHHH---HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHH
Q psy12559 10 RGITIQSAATYTL-WKDHNINIIDTPGHVD----------FTVE---VERALRVLDGAILVLCAVGGVQSQTLTVNRQMK 75 (610)
Q Consensus 10 RgiTi~s~~~~~~-~~~~~inlIDTPGh~d----------F~~e---v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~ 75 (610)
.|.|.......+. +++..++|+||||+.+ |... ..+....+|++++|+|+.++.......+++.+.
T Consensus 62 ~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~ 141 (223)
T 4dhe_A 62 PGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFA 141 (223)
T ss_dssp CCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHG
T ss_pred CCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3556655555555 5678999999999744 2333 333344489999999999999988999999999
Q ss_pred hcCCCeEEEEecccCCC
Q psy12559 76 RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~ 92 (610)
..++|+++|+||+|+..
T Consensus 142 ~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 142 PTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp GGCCCEEEEEECGGGSC
T ss_pred hcCCCEEEEEeccccCC
Confidence 99999999999999874
No 38
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.39 E-value=2.4e-14 Score=143.42 Aligned_cols=167 Identities=15% Similarity=0.075 Sum_probs=104.7
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH-----------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV-----------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-- 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~-----------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~-- 77 (610)
++|+......+.|+++.++|||||||.+|.. .+..+++.+|++|+|+|+.. ++.+++.+|+++.+.
T Consensus 56 ~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~ 134 (260)
T 2xtp_A 56 TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFG 134 (260)
T ss_dssp CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHC
T ss_pred ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhC
Confidence 4777777788899999999999999988732 23346778999999999985 888888899888876
Q ss_pred ---CCCeEEEEe-cccCCCCCHHHHH--------HHHHHHhCCCeeEe-eccc------cCCCCeeEEEEccccee-Eee
Q psy12559 78 ---DVPCIAFIN-KLDRLGADPYRVI--------NQMRQKVGHNAAFL-QIPI------GLGSETKGIIDLIQRKA-IYF 137 (610)
Q Consensus 78 ---~ip~i~~iN-KiDr~~~~~~~~~--------~~i~~~l~~~~~~~-~~p~------~~~~~~~g~~d~~~~~~-~~~ 137 (610)
+.|+|+++| |+|+...++.+.+ .++.+.++....+. .+|+ +-..-|.++.+.+.+.. ++|
T Consensus 135 ~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 135 EDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred chhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence 789998888 9999876665522 22344444321111 1232 11222334444444433 444
Q ss_pred cCCCCCceEeecCch--hHHHHHHHHHHHHHHHHhcCCHHHHHhhhcC
Q psy12559 138 EGPLGDNLRIEEIPA--DLKKEAESKRQELIEHVAEGDEILGEMFLEE 183 (610)
Q Consensus 138 ~~~~g~~~~~~~~~~--~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 183 (610)
+.. ...++|. .......+.|..+.+.+++.+++++++|.+.
T Consensus 215 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (260)
T 2xtp_A 215 TNG-----LYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALA 257 (260)
T ss_dssp CCH-----HHHHC-------------CHHHHHHHHHHHHHHHHHC---
T ss_pred CHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 321 1223444 4455566788899999999999999999753
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.37 E-value=9e-13 Score=142.03 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=67.2
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcC----------cHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVD----------FTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR 76 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~d----------F~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~ 76 (610)
...|+|+++....+.+++..++|||||||.+ |... ...+++.+|++|+|+|+.+|...|+..++..+..
T Consensus 205 ~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~ 284 (436)
T 2hjg_A 205 NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE 284 (436)
T ss_dssp ---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred CCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH
Confidence 3578999999899999999999999999944 3322 3468889999999999999999999999999999
Q ss_pred cCCCeEEEEecccCCC
Q psy12559 77 YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 ~~ip~i~~iNKiDr~~ 92 (610)
.++|+|+++||+|+..
T Consensus 285 ~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 285 AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp TTCEEEEEEECGGGSC
T ss_pred cCCcEEEEEECccCCC
Confidence 9999999999999874
No 40
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.35 E-value=1e-12 Score=122.66 Aligned_cols=87 Identities=39% Similarity=0.492 Sum_probs=76.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++|.......+.+++..++|+||||+.+|.....+.++.+|++|+|+|+..+...++...++.+...++|+++++||+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~D 118 (178)
T 2lkc_A 39 GGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118 (178)
T ss_dssp CSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTT
T ss_pred CceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECcc
Confidence 45666666777888999999999999999988888888899999999999999999999999988888999999999999
Q ss_pred CCCCCHH
Q psy12559 90 RLGADPY 96 (610)
Q Consensus 90 r~~~~~~ 96 (610)
+...+.+
T Consensus 119 l~~~~~~ 125 (178)
T 2lkc_A 119 KPEANPD 125 (178)
T ss_dssp SSCSCHH
T ss_pred CCcCCHH
Confidence 9865543
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.34 E-value=1.8e-12 Score=132.67 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=63.3
Q ss_pred eEEEecCeeEEEecCCCCc---------CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 19 TYTLWKDHNINIIDTPGHV---------DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~---------dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
..+.|++++++|+|||||. +|...+..+++.+|++++|+|+.. ++.+++.+++.+...+.|.|+++||+|
T Consensus 49 gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D 127 (301)
T 1ega_A 49 GIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVD 127 (301)
T ss_dssp EEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTT
T ss_pred EEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 3467889999999999998 333445677889999999999988 999999999998888999999999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
+..
T Consensus 128 ~~~ 130 (301)
T 1ega_A 128 NVQ 130 (301)
T ss_dssp TCC
T ss_pred cCc
Confidence 874
No 42
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.30 E-value=7.9e-12 Score=114.46 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=68.0
Q ss_pred HHHhcceeecceeEEEecCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 7 ERQRGITIQSAATYTLWKDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
+...++|.......+.+++..++|+||||+.+ +.......++.+|++++|+|+..+.....+.+++.+.+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 109 (161)
T 2dyk_A 30 ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGK 109 (161)
T ss_dssp --------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTC
T ss_pred cCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCC
Confidence 34556777777778888899999999999988 45567778899999999999999988887888888888899
Q ss_pred CeEEEEecccCC
Q psy12559 80 PCIAFINKLDRL 91 (610)
Q Consensus 80 p~i~~iNKiDr~ 91 (610)
|+++++||+|+.
T Consensus 110 p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 110 PVILVATKVDDP 121 (161)
T ss_dssp CEEEEEECCCSG
T ss_pred CEEEEEECcccc
Confidence 999999999986
No 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=1.7e-11 Score=115.73 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=58.6
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.+++..++|+||||+.+|.......++.+|++|+|+|+..+-..+ ....+..+.+ .++|+++++||
T Consensus 47 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 47 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp CSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred CCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEEC
Confidence 344445567788999999999999999888888899999999999998874322 2334444443 58999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 127 ~Dl~~ 131 (187)
T 1zj6_A 127 QDVKE 131 (187)
T ss_dssp TTSTT
T ss_pred CCCcC
Confidence 99874
No 44
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.28 E-value=1.7e-11 Score=116.04 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=62.5
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.++++.++|+||||+.+|.......++.+|++|+|+|+...-..+. ...+..+.+ .++|+++++||
T Consensus 54 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 54 TVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred CCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEEC
Confidence 4444445677889999999999999999989999999999999999987533322 233443332 68999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
+|+...
T Consensus 134 ~Dl~~~ 139 (188)
T 1zd9_A 134 RDLPGA 139 (188)
T ss_dssp TTSTTC
T ss_pred CCCccC
Confidence 998743
No 45
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.28 E-value=3.3e-11 Score=110.69 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=61.9
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.+++..++|+||||+.+|.......++.+|++++|+|+...-..+ ....+..... .++|++++.||
T Consensus 31 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 110 (164)
T 1r8s_A 31 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110 (164)
T ss_dssp CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEEC
Confidence 444445567788999999999999999988888999999999999998763322 2233444333 38999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 111 ~Dl~~ 115 (164)
T 1r8s_A 111 QDLPN 115 (164)
T ss_dssp TTSTT
T ss_pred cCCcC
Confidence 99874
No 46
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.26 E-value=1.9e-11 Score=116.24 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=64.1
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc-----------CCC
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY-----------DVP 80 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~-----------~ip 80 (610)
|+......+.++++.++|+||||+.+|.......++.+|++|+|+|+..+-..+. ...|..+.+. ++|
T Consensus 50 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 129 (199)
T 4bas_A 50 TVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP 129 (199)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC
T ss_pred ccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC
Confidence 4444455667889999999999999999888888999999999999998754333 3445555443 899
Q ss_pred eEEEEecccCCCC
Q psy12559 81 CIAFINKLDRLGA 93 (610)
Q Consensus 81 ~i~~iNKiDr~~~ 93 (610)
+|+|+||+|+...
T Consensus 130 iilv~NK~Dl~~~ 142 (199)
T 4bas_A 130 FLFFANKMDAAGA 142 (199)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEECcCCCCC
Confidence 9999999998743
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.26 E-value=1.2e-11 Score=114.35 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=61.8
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.+++..++|+||||+.+|.......++.+|++++|+|+...-..+ ....+..... .++|+++++||
T Consensus 38 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 117 (171)
T 1upt_A 38 TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANK 117 (171)
T ss_dssp CSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred cCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEEC
Confidence 444445567788999999999999999888888889999999999998764322 2233333332 58999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
+|+...
T Consensus 118 ~Dl~~~ 123 (171)
T 1upt_A 118 QDMEQA 123 (171)
T ss_dssp TTSTTC
T ss_pred CCCcCC
Confidence 998743
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.25 E-value=1.4e-11 Score=116.78 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=59.4
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh---------cCCCeEEEEecccCCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR---------YDVPCIAFINKLDRLG 92 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~---------~~ip~i~~iNKiDr~~ 92 (610)
.+...++|+||||+.+|.......++.+|++|+|+|+..+...++...++.+.. .++|+++|.||+|+..
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp SCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 345789999999999999999999999999999999998777666666655433 5899999999999864
No 49
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.25 E-value=7.8e-13 Score=137.78 Aligned_cols=175 Identities=14% Similarity=0.053 Sum_probs=117.8
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCC-CHHHHHHH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQ 101 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~-~~~~~~~~ 101 (610)
|+++.++||||||+.++...+ .+.+|++++|+|+..|...|+... ...++|.++|+||+|+.+. ++...+++
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCChHHHHHHHHH
Confidence 778999999999999887654 589999999999988765444322 1236799999999999864 45555667
Q ss_pred HHHHhCC-Ce-----eEeecccc--CCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcCC
Q psy12559 102 MRQKVGH-NA-----AFLQIPIG--LGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGD 173 (610)
Q Consensus 102 i~~~l~~-~~-----~~~~~p~~--~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d 173 (610)
+++.++. ++ .+..+|+. .+.++.++.+.+.+....|.. | ..+|. ....+.+..++|.+ +
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~--~-----~~~~~---~r~~~~~~~~~e~i---~ 285 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA--S-----GRLQQ---VRQQQSVEWLRKQT---E 285 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH--T-----THHHH---HHHHHHHHHHHHHH---H
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh--C-----ChHHH---HHHHHHHHHHHHHH---H
Confidence 7664432 11 12234443 566677777766655433311 1 01221 22344666677775 7
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHhhhcCceeEEEeccccCCccHHHHHHHHHH
Q psy12559 174 EILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLD 227 (610)
Q Consensus 174 d~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~~Sa~~~~gv~~Lld~i~~ 227 (610)
+.++++|+++ ++.+++..++++++..+.++|++|. +.|++.+..
T Consensus 286 e~l~~~~~~~--~~~~~~~~~l~~~v~~~~~~P~~~~--------~~~~~~~~~ 329 (341)
T 2p67_A 286 EEVLNHLFAN--EDFDRYYRQTLLAVKNNTLSPRTGL--------RQLSEFIQT 329 (341)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHTTSSCHHHHH--------HHHHHHHHC
T ss_pred HHHHHHHHhC--cchhHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhh
Confidence 8999999985 7888999999999999999999765 668887755
No 50
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.23 E-value=7.4e-12 Score=126.29 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=65.1
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH---------HHH---HHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV---------EVE---RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~---------ev~---~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.|+|+......+.+++..++|+||||+.+|.. .+. ...+.+|++|+|+|+.. ..+...++.++.+.
T Consensus 34 ~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~ 111 (274)
T 3i8s_A 34 AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLEL 111 (274)
T ss_dssp TTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH
T ss_pred CCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc
Confidence 47888888888999999999999999998762 122 22368999999999987 34556677788888
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++++||+|..
T Consensus 112 ~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 112 GIPCIVALNMLDIA 125 (274)
T ss_dssp TCCEEEEEECHHHH
T ss_pred CCCEEEEEECccch
Confidence 99999999999964
No 51
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.22 E-value=1.3e-11 Score=123.26 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=65.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHH---------HH-HHH--hhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVE---------VE-RAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e---------v~-~al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.|+|+......+.++++.++|+||||+.+|... +. ..+ +.+|++|+|+|+.. ..+...++.++...
T Consensus 32 pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~ 109 (256)
T 3iby_A 32 PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFEL 109 (256)
T ss_dssp TTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTS
T ss_pred CCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHc
Confidence 478888888889999999999999999988642 22 233 67999999999987 34556677888889
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++++||+|..
T Consensus 110 ~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 110 GKPVVVALNMMDIA 123 (256)
T ss_dssp CSCEEEEEECHHHH
T ss_pred CCCEEEEEEChhcC
Confidence 99999999999964
No 52
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.21 E-value=5e-11 Score=112.79 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=62.5
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh------cCCCeEEE
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR------YDVPCIAF 84 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~------~~ip~i~~ 84 (610)
.|+......+.+++..++|+||||+.+|.......++.+|++|+|+|+...-..+. ...+..+.+ .++|++++
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv 132 (190)
T 2h57_A 53 PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132 (190)
T ss_dssp CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEE
T ss_pred CccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEE
Confidence 45555556677889999999999999998888888999999999999987633222 233333332 48999999
Q ss_pred EecccCCC
Q psy12559 85 INKLDRLG 92 (610)
Q Consensus 85 iNKiDr~~ 92 (610)
+||+|+..
T Consensus 133 ~nK~Dl~~ 140 (190)
T 2h57_A 133 ANKMDLRD 140 (190)
T ss_dssp EECTTSTT
T ss_pred EeCcCccc
Confidence 99999874
No 53
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.20 E-value=1e-10 Score=111.18 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=56.0
Q ss_pred eecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecc
Q psy12559 14 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKL 88 (610)
Q Consensus 14 i~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKi 88 (610)
+......+.+++..++|+||||+.+|.......++.+|++|+|+|+...-..+. ...+..+.+ .++|+++++||+
T Consensus 61 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~ 140 (192)
T 2b6h_A 61 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQ 140 (192)
T ss_dssp TTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred CceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECC
Confidence 333344567789999999999999998888889999999999999987643332 233443332 389999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|+..
T Consensus 141 Dl~~ 144 (192)
T 2b6h_A 141 DMPN 144 (192)
T ss_dssp TSTT
T ss_pred CCCC
Confidence 9864
No 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.20 E-value=7.9e-11 Score=126.91 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=69.2
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcC---------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVD---------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~d---------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ 78 (610)
-.-|+|.+.....+.|+++.++||||||... +...+..+++.+|++|+|+|+..|.+...+.+++.+++.+
T Consensus 31 ~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~ 110 (439)
T 1mky_A 31 DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKST 110 (439)
T ss_dssp -------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3568899989999999999999999999765 3456788899999999999999999988888888888889
Q ss_pred CCeEEEEecccCC
Q psy12559 79 VPCIAFINKLDRL 91 (610)
Q Consensus 79 ip~i~~iNKiDr~ 91 (610)
+|+++++||+|..
T Consensus 111 ~p~ilv~NK~D~~ 123 (439)
T 1mky_A 111 VDTILVANKAENL 123 (439)
T ss_dssp CCEEEEEESCCSH
T ss_pred CCEEEEEeCCCCc
Confidence 9999999999964
No 55
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.20 E-value=9.5e-11 Score=109.48 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=58.3
Q ss_pred eeEEEec--CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc---CCCeEEEEecccCC
Q psy12559 18 ATYTLWK--DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY---DVPCIAFINKLDRL 91 (610)
Q Consensus 18 ~~~~~~~--~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~---~ip~i~~iNKiDr~ 91 (610)
...+.++ ...++|+||||+.+|.......++.+|++|+|+|+..+...+. ..++..+... ++|+++++||+|+.
T Consensus 51 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 51 SQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 3344444 4689999999999999989999999999999999987655333 4444555543 78899999999986
Q ss_pred C
Q psy12559 92 G 92 (610)
Q Consensus 92 ~ 92 (610)
.
T Consensus 131 ~ 131 (181)
T 2efe_B 131 D 131 (181)
T ss_dssp T
T ss_pred c
Confidence 3
No 56
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.20 E-value=7.6e-11 Score=111.74 Aligned_cols=68 Identities=15% Similarity=0.333 Sum_probs=56.2
Q ss_pred CeeEEEecCCCC----------cCcHHHHHHHHhhc---CEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGH----------VDFTVEVERALRVL---DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh----------~dF~~ev~~al~~~---D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+..++|+||||+ ..|...+...++.+ |++++|+|+..+...+...+++.+...++|+++++||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 347999999994 44544455555655 99999999999988888888888888999999999999987
Q ss_pred C
Q psy12559 92 G 92 (610)
Q Consensus 92 ~ 92 (610)
.
T Consensus 148 ~ 148 (195)
T 1svi_A 148 P 148 (195)
T ss_dssp C
T ss_pred C
Confidence 4
No 57
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.19 E-value=2.6e-10 Score=107.15 Aligned_cols=75 Identities=19% Similarity=0.117 Sum_probs=59.1
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEecccCCCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iNKiDr~~~ 93 (610)
..+.+++..++++||||+..|.......++.+|++++|+|+...-..+. ...+..+. ..++|++++.||+|+...
T Consensus 53 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp EEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 3566788999999999999999988999999999999999987543332 23333332 257999999999998753
No 58
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.19 E-value=4.6e-11 Score=123.73 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=57.6
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc--hhhHHHHHHHHh---cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ--SQTLTVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~--~qt~~v~~~~~~---~~ip~i~~iNK 87 (610)
|+......+.+++..++|+||||+.+|.......++.+|++|+|+|+...-. .....+.+.+.. .++|+|+|+||
T Consensus 196 T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK 275 (329)
T 3o47_A 196 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 275 (329)
T ss_dssp ETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred ccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence 4445556778899999999999999999989999999999999999975432 222333333333 38999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
+|+...
T Consensus 276 ~Dl~~~ 281 (329)
T 3o47_A 276 QDLPNA 281 (329)
T ss_dssp TTSTTC
T ss_pred ccCCcc
Confidence 998754
No 59
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.19 E-value=4.7e-11 Score=112.14 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=62.2
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.+++..++|+||||+.+|.......++.+|++|+|+|+...-..+ ....+..+.+ .++|+++++||
T Consensus 52 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 52 TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp CSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred cCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEEC
Confidence 333444567788999999999999999888888899999999999999864333 2334444432 68999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 132 ~Dl~~ 136 (181)
T 2h17_A 132 QDVKE 136 (181)
T ss_dssp TTSTT
T ss_pred CCccc
Confidence 99864
No 60
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.18 E-value=2.9e-11 Score=121.69 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=66.5
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHH------HHHHH--hhcCEEEEEEecCCCcchhhHHHHHHHHhcC-C
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVE------VERAL--RVLDGAILVLCAVGGVQSQTLTVNRQMKRYD-V 79 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e------v~~al--~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~-i 79 (610)
..|+|+......+.|+++.++|+||||+.+|... ....+ ..+|++++|+|+..+ .+...++.++...+ +
T Consensus 33 ~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~ 110 (271)
T 3k53_A 33 WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVK 110 (271)
T ss_dssp CTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCC
Confidence 3578888888899999999999999999988652 22222 459999999999985 46677788888888 9
Q ss_pred CeEEEEecccCC
Q psy12559 80 PCIAFINKLDRL 91 (610)
Q Consensus 80 p~i~~iNKiDr~ 91 (610)
|+++++||+|..
T Consensus 111 p~ilv~NK~Dl~ 122 (271)
T 3k53_A 111 NIILVLNKFDLL 122 (271)
T ss_dssp SEEEEEECHHHH
T ss_pred CEEEEEEChhcC
Confidence 999999999954
No 61
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.18 E-value=3.9e-11 Score=112.93 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=61.2
Q ss_pred eecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecc
Q psy12559 14 IQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKL 88 (610)
Q Consensus 14 i~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKi 88 (610)
+......+.+++..++|+||||+.+|.......++.+|++++|+|+...-..+. ...+..+.+ .++|+++++||+
T Consensus 50 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 129 (186)
T 1ksh_A 50 LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQ 129 (186)
T ss_dssp SSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred CccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCc
Confidence 333445667789999999999999998888888899999999999988654332 334444433 479999999999
Q ss_pred cCCC
Q psy12559 89 DRLG 92 (610)
Q Consensus 89 Dr~~ 92 (610)
|+..
T Consensus 130 Dl~~ 133 (186)
T 1ksh_A 130 DLPG 133 (186)
T ss_dssp TSTT
T ss_pred cCCC
Confidence 9874
No 62
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.18 E-value=2.1e-11 Score=115.22 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=60.8
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNK 87 (610)
|+.....++.+++..++++||||+.+|.......++.+|++|+|+|+...-..+. ...+....+ .++|+++++||
T Consensus 53 t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 132 (189)
T 2x77_A 53 TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANK 132 (189)
T ss_dssp STTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEEC
T ss_pred CCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEEC
Confidence 3334445677889999999999999988777778889999999999987643222 233333333 48999999999
Q ss_pred ccCCCC
Q psy12559 88 LDRLGA 93 (610)
Q Consensus 88 iDr~~~ 93 (610)
+|+...
T Consensus 133 ~Dl~~~ 138 (189)
T 2x77_A 133 QDLPDA 138 (189)
T ss_dssp TTSTTC
T ss_pred CCCcCC
Confidence 998743
No 63
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.17 E-value=1.1e-10 Score=107.41 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=59.4
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEec
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNK 87 (610)
.+.......+...++.++|+||||+.+|.......++.+|++|+|+|+......+. ..++..+.+ .++|++++.||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 41 AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred eEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 33333334444456789999999999999989999999999999999987654333 333444443 37888999999
Q ss_pred ccCC
Q psy12559 88 LDRL 91 (610)
Q Consensus 88 iDr~ 91 (610)
+|+.
T Consensus 121 ~Dl~ 124 (170)
T 1r2q_A 121 ADLA 124 (170)
T ss_dssp GGGG
T ss_pred ccCc
Confidence 9975
No 64
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.16 E-value=4.7e-11 Score=113.30 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=63.1
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFIN 86 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iN 86 (610)
.|+......+.+++..++++||||+.+|.......++.+|++++|+|+..+-..+. ...+..+. ..++|++++.|
T Consensus 53 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (190)
T 1m2o_B 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGN 132 (190)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEE
Confidence 35555566788889999999999999988777778899999999999998754332 23333332 36899999999
Q ss_pred cccCCC
Q psy12559 87 KLDRLG 92 (610)
Q Consensus 87 KiDr~~ 92 (610)
|+|+..
T Consensus 133 K~Dl~~ 138 (190)
T 1m2o_B 133 KIDAPN 138 (190)
T ss_dssp CTTSTT
T ss_pred CCCCcC
Confidence 999875
No 65
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1.2e-10 Score=110.44 Aligned_cols=81 Identities=20% Similarity=0.089 Sum_probs=60.8
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh---cCCCeEEEEe
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFIN 86 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~---~~ip~i~~iN 86 (610)
|.|.....+.+......++|+||||+.+|.......++.+|++|+|+|+...-..+... +++.+.+ .++|+++++|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~N 136 (192)
T 2fg5_A 57 GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136 (192)
T ss_dssp SEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 33333333444445679999999999999999999999999999999998865544433 3344444 3789999999
Q ss_pred cccCC
Q psy12559 87 KLDRL 91 (610)
Q Consensus 87 KiDr~ 91 (610)
|+|+.
T Consensus 137 K~Dl~ 141 (192)
T 2fg5_A 137 KCDLS 141 (192)
T ss_dssp CGGGG
T ss_pred Ccccc
Confidence 99975
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.16 E-value=2.2e-11 Score=131.21 Aligned_cols=84 Identities=25% Similarity=0.346 Sum_probs=64.8
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCc--------CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHV--------DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV 79 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~--------dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i 79 (610)
-..|+|.+.....+.|++..++|+||||+. .|...+..+++.+|++|+|+|+..|+..+.+.+++.+++.++
T Consensus 33 ~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~ 112 (436)
T 2hjg_A 33 DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 112 (436)
T ss_dssp --------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCS
T ss_pred CCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 356888888888889999999999999986 566778889999999999999999999999999898888999
Q ss_pred CeEEEEecccCC
Q psy12559 80 PCIAFINKLDRL 91 (610)
Q Consensus 80 p~i~~iNKiDr~ 91 (610)
|+++++||+|..
T Consensus 113 pvilv~NK~D~~ 124 (436)
T 2hjg_A 113 PVVLAVNKLDNT 124 (436)
T ss_dssp CEEEEEECCCC-
T ss_pred CEEEEEECccCc
Confidence 999999999976
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=1.8e-10 Score=124.06 Aligned_cols=83 Identities=20% Similarity=0.230 Sum_probs=64.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH------------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV------------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~------------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.|+|.+.....+.|++..++++||||...+.. .+..+++.+|++++|+|+..|...|...+++.+...
T Consensus 212 ~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~ 291 (439)
T 1mky_A 212 PGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR 291 (439)
T ss_dssp C------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred CCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 36777777788899999999999999854432 235678899999999999999999988888888889
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+++++||+|...
T Consensus 292 ~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 292 GRASVVVFNKWDLVV 306 (439)
T ss_dssp TCEEEEEEECGGGST
T ss_pred CCCEEEEEECccCCC
Confidence 999999999999863
No 68
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.14 E-value=7.7e-11 Score=112.63 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=59.1
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEe
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFIN 86 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iN 86 (610)
-|+......+.+++..++++||||+.+|.......++.+|++++|+|+...-.-+. ...+..+. ..++|++++.|
T Consensus 55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 134 (198)
T 1f6b_A 55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 134 (198)
T ss_dssp CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence 35555667788899999999999999988777778899999999999987643322 23333332 35899999999
Q ss_pred cccCCC
Q psy12559 87 KLDRLG 92 (610)
Q Consensus 87 KiDr~~ 92 (610)
|+|+..
T Consensus 135 K~Dl~~ 140 (198)
T 1f6b_A 135 KIDRPE 140 (198)
T ss_dssp CTTSTT
T ss_pred CCCccc
Confidence 999875
No 69
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.14 E-value=2e-10 Score=108.47 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=55.7
Q ss_pred ecCeeEEEecCCCC----------cCcHHHHHHHHh---hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 23 WKDHNINIIDTPGH----------VDFTVEVERALR---VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 23 ~~~~~inlIDTPGh----------~dF~~ev~~al~---~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
..+..+.++||||. ..|...+...++ .+|++++|+|+..+...+...+++.+...++|+++++||+|
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 65 LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 34567999999993 334443344444 45999999999999888888888999989999999999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
+..
T Consensus 145 l~~ 147 (195)
T 3pqc_A 145 KVK 147 (195)
T ss_dssp GSC
T ss_pred cCC
Confidence 874
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.13 E-value=2.5e-10 Score=108.90 Aligned_cols=73 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEEecccCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~iNKiDr~ 91 (610)
+.+..+...++|+||||+.+|.......++.+|++|+|+|+..+...+...-| +.+.. .++|+++++||+|+.
T Consensus 70 ~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 70 LIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 33333457799999999999999999999999999999999887655553333 33333 479999999999974
No 71
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.13 E-value=6.2e-11 Score=118.40 Aligned_cols=80 Identities=24% Similarity=0.313 Sum_probs=64.5
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH-----HHHHHH---hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV-----EVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~-----ev~~al---~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
.|+|+......+.+++..++|+||||+.+|.. .+.+.. ..+|++++|+|+...- ....++.++.+.++|+
T Consensus 36 pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pv 113 (258)
T 3a1s_A 36 PGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKV 113 (258)
T ss_dssp TTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCE
T ss_pred CCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCE
Confidence 48888888888999999999999999988753 222322 4789999999998742 3445778888899999
Q ss_pred EEEEecccCC
Q psy12559 82 IAFINKLDRL 91 (610)
Q Consensus 82 i~~iNKiDr~ 91 (610)
++++||+|..
T Consensus 114 ilv~NK~Dl~ 123 (258)
T 3a1s_A 114 ILAMTAIDEA 123 (258)
T ss_dssp EEEEECHHHH
T ss_pred EEEEECcCCC
Confidence 9999999964
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.12 E-value=2.5e-10 Score=105.19 Aligned_cols=68 Identities=24% Similarity=0.141 Sum_probs=54.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
....+.|+||||+.+|.......++.+|++++|+|+......+.. .+++.+.. .++|++++.||+|+.
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 457899999999999998889999999999999999887654443 33344443 467888999999975
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.12 E-value=3e-10 Score=104.56 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=54.5
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh---cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
....++|+||||+.+|.......++.+|++++|+|+......+... ++..+.+ .++|+++++||+|+..
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 3468999999999999999999999999999999998865443332 3333332 4789999999999863
No 74
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=9.4e-11 Score=109.81 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=57.8
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iNK 87 (610)
|+......+.+++..++++||||+.+|.......++.+|++++|+|+...-..+. ...+..+. ..++|+++++||
T Consensus 49 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (183)
T 1moz_A 49 TIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 128 (183)
T ss_dssp STTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred cCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEEC
Confidence 3334455677788999999999999988888888899999999999987643332 33344443 367999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 129 ~Dl~~ 133 (183)
T 1moz_A 129 QDQPG 133 (183)
T ss_dssp TTSTT
T ss_pred CCCCC
Confidence 99874
No 75
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.11 E-value=4.1e-10 Score=106.80 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=63.4
Q ss_pred HhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeE
Q psy12559 9 QRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCI 82 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i 82 (610)
...+++......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+..+...+...-| +.+.. .++|++
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii 135 (192)
T 2il1_A 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL 135 (192)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 34445555555566655 6899999999999999999999999999999999987665554333 33333 479999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++||+|+.
T Consensus 136 lV~NK~Dl~ 144 (192)
T 2il1_A 136 LVGNKLDCE 144 (192)
T ss_dssp EEEECGGGG
T ss_pred EEEECcccc
Confidence 999999975
No 76
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.11 E-value=5.2e-10 Score=104.11 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=61.1
Q ss_pred HhcceeecceeEEEecC---eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh-----cCC
Q psy12559 9 QRGITIQSAATYTLWKD---HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR-----YDV 79 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~---~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~-----~~i 79 (610)
...++++.....+.+.+ ..++|+||||+..|.......++.+|++|+|+|+..+...+... +++.+.. .+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 115 (178)
T 2hxs_A 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115 (178)
T ss_dssp HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 33444444445666655 79999999999999988899999999999999998865544433 3333433 267
Q ss_pred C-eEEEEecccCC
Q psy12559 80 P-CIAFINKLDRL 91 (610)
Q Consensus 80 p-~i~~iNKiDr~ 91 (610)
| ++++.||+|+.
T Consensus 116 ~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 116 PLVALVGNKIDLE 128 (178)
T ss_dssp CEEEEEEECGGGG
T ss_pred CeEEEEEEccccc
Confidence 7 68999999975
No 77
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.11 E-value=3.1e-10 Score=105.51 Aligned_cols=73 Identities=19% Similarity=0.127 Sum_probs=56.9
Q ss_pred eEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEEecccCC
Q psy12559 19 TYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 19 ~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~iNKiDr~ 91 (610)
..+......++|+||||+.+|.......++.+|++|+|+|+..+...+....| ..+.. .++|+++++||+|+.
T Consensus 57 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 57 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 33333457899999999999999999999999999999999987554443333 33332 578999999999975
No 78
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.11 E-value=2.5e-10 Score=109.03 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=56.0
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
.....++|+||||+.+|.......++.+|++|+|+|+..+-..+.. .++..+.. .++|+++++||+|+..
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 54 DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 3457899999999999999999999999999999999886543333 33444444 4799999999999863
No 79
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.09 E-value=2.4e-10 Score=107.04 Aligned_cols=84 Identities=20% Similarity=0.116 Sum_probs=52.5
Q ss_pred HhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeE
Q psy12559 9 QRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCI 82 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i 82 (610)
..++++......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+...-..+. ..++..+.. .++|++
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 117 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 117 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 34455555555666666 789999999999998888888899999999999988544333 334444444 378999
Q ss_pred EEEecccCCC
Q psy12559 83 AFINKLDRLG 92 (610)
Q Consensus 83 ~~iNKiDr~~ 92 (610)
+++||+|+..
T Consensus 118 lv~nK~Dl~~ 127 (183)
T 2fu5_C 118 ILGNKCDVND 127 (183)
T ss_dssp EEEEC--CCS
T ss_pred EEEECccCCc
Confidence 9999999863
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=8e-10 Score=101.87 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=54.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHHHh-----cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQMKR-----YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~~~-----~~ip~i~~iNKiDr~ 91 (610)
..+.++|+||||+.+|.......++.+|++++|+|+...-..+ ...++..+.+ .++|+++++||+|+.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 3467999999999999999999999999999999998754332 3445555544 379999999999975
No 81
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.09 E-value=1.3e-10 Score=109.68 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=59.7
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEec
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNK 87 (610)
++.....+.+..+...++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+++.+.+ .++|+++++||
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 136 (189)
T 2gf9_A 57 IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136 (189)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 33333333333446789999999999998888889999999999999987654433 334455554 37999999999
Q ss_pred ccCC
Q psy12559 88 LDRL 91 (610)
Q Consensus 88 iDr~ 91 (610)
+|+.
T Consensus 137 ~Dl~ 140 (189)
T 2gf9_A 137 CDLE 140 (189)
T ss_dssp TTCG
T ss_pred cccc
Confidence 9975
No 82
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.09 E-value=8.9e-11 Score=127.11 Aligned_cols=85 Identities=26% Similarity=0.369 Sum_probs=68.5
Q ss_pred HHHhcceeecceeEEEecCeeEEEecCCC--------CcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC
Q psy12559 7 ERQRGITIQSAATYTLWKDHNINIIDTPG--------HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~~~~~inlIDTPG--------h~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ 78 (610)
+...|+|.+.....+.|.+..++++|||| +..|...+..+++.+|++|+|+|+..|++.+++.+++.+++.+
T Consensus 52 ~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~ 131 (456)
T 4dcu_A 52 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK 131 (456)
T ss_dssp ---------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCC
T ss_pred CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcC
Confidence 34568899888889999999999999999 5567777889999999999999999999999999999999999
Q ss_pred CCeEEEEecccCC
Q psy12559 79 VPCIAFINKLDRL 91 (610)
Q Consensus 79 ip~i~~iNKiDr~ 91 (610)
+|+++++||+|..
T Consensus 132 ~pvilV~NK~D~~ 144 (456)
T 4dcu_A 132 KPVVLAVNKLDNT 144 (456)
T ss_dssp SCEEEEEECC---
T ss_pred CCEEEEEECccch
Confidence 9999999999975
No 83
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.08 E-value=2.1e-10 Score=124.18 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHH--------HHhhcCEEEEEEecCCCcch----hhHHHHHHHH
Q psy12559 8 RQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVER--------ALRVLDGAILVLCAVGGVQS----QTLTVNRQMK 75 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~--------al~~~D~ailVvDa~~Gv~~----qt~~v~~~~~ 75 (610)
...|+|.+.....+.++++.++|+||||+.+|...+.. .++.+|++|+|+|+..+... +...+++.+.
T Consensus 263 ~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~ 342 (476)
T 3gee_A 263 HMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP 342 (476)
T ss_dssp ----------CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT
T ss_pred CCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC
Confidence 34678888888888999999999999999887765433 46789999999999998877 4455555544
Q ss_pred hcCCCeEEEEecccCCCC
Q psy12559 76 RYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 76 ~~~ip~i~~iNKiDr~~~ 93 (610)
++|+|+|+||+|+...
T Consensus 343 --~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 343 --AAKFLTVANKLDRAAN 358 (476)
T ss_dssp --TSEEEEEEECTTSCTT
T ss_pred --CCCEEEEEECcCCCCc
Confidence 7999999999998754
No 84
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.08 E-value=3.4e-10 Score=105.57 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=49.8
Q ss_pred eEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCCC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~~ 92 (610)
..+.+++ ..++|+||||+.+|.......++.+|++|+|+|+..+...+.. .++..+.. .++|+++++||+|+..
T Consensus 51 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 51 KVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 3344444 5899999999999998888899999999999999886544432 33344443 6799999999999863
No 85
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.08 E-value=3.8e-10 Score=106.33 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=55.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+.+|.......++.+|++|+|+|+..+...+. ..++..+.. .++|+++++||+|+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4689999999999999999999999999999999988765554 333344443 589999999999975
No 86
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.08 E-value=1.1e-09 Score=105.57 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=66.0
Q ss_pred eeecceeEEEec---CeeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhhHH---HHHHHH------hcCC
Q psy12559 13 TIQSAATYTLWK---DHNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQTLT---VNRQMK------RYDV 79 (610)
Q Consensus 13 Ti~s~~~~~~~~---~~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt~~---v~~~~~------~~~i 79 (610)
|+......+.++ ++.++|+|||||.+|.. .....++.+|++|+|+|+.. ...+... .|.... ..++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (214)
T 2fh5_B 38 SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSP 116 (214)
T ss_dssp CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 333334446666 67899999999999988 45666899999999999986 3333333 333221 2478
Q ss_pred CeEEEEecccCCCC-CHHHHHHHHHHHhC
Q psy12559 80 PCIAFINKLDRLGA-DPYRVINQMRQKVG 107 (610)
Q Consensus 80 p~i~~iNKiDr~~~-~~~~~~~~i~~~l~ 107 (610)
|+++++||+|+... ..+...+.+++.++
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 117 SLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 99999999999854 45666666666554
No 87
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.08 E-value=5.4e-10 Score=105.82 Aligned_cols=83 Identities=18% Similarity=0.133 Sum_probs=63.7
Q ss_pred hcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEE
Q psy12559 10 RGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIA 83 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~ 83 (610)
.+++.......+.+++ +.++|+||||+.+|.......++.+|++|+|+|+...-..+.. .+++.+.. .++|+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~il 126 (196)
T 3tkl_A 47 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126 (196)
T ss_dssp CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred CcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4555556666666766 6799999999999999999999999999999999986543332 33344433 3799999
Q ss_pred EEecccCCC
Q psy12559 84 FINKLDRLG 92 (610)
Q Consensus 84 ~iNKiDr~~ 92 (610)
++||+|+..
T Consensus 127 v~nK~Dl~~ 135 (196)
T 3tkl_A 127 VGNKCDLTT 135 (196)
T ss_dssp EEECTTCTT
T ss_pred EEECccccc
Confidence 999999864
No 88
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=2.9e-10 Score=107.58 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=61.1
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEec
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNK 87 (610)
++.......+..+...++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+++.+.. .++|+++++||
T Consensus 58 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 137 (191)
T 3dz8_A 58 IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137 (191)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred eEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 33444444444567899999999999999999999999999999999987543333 334444544 58999999999
Q ss_pred ccCC
Q psy12559 88 LDRL 91 (610)
Q Consensus 88 iDr~ 91 (610)
+|+.
T Consensus 138 ~Dl~ 141 (191)
T 3dz8_A 138 CDME 141 (191)
T ss_dssp TTCG
T ss_pred CCCc
Confidence 9975
No 89
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.07 E-value=3.6e-10 Score=104.42 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=58.8
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH-----H-HHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV-----E-VERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~-----e-v~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
.|+|+......+.+++..++++||||+.+|.. . ....++ .+|++++|+|+..- .+...++..+.+.++|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ 111 (165)
T 2wji_A 34 PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANL 111 (165)
T ss_dssp ---CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCE
T ss_pred CCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCE
Confidence 46777777777888899999999999988841 1 223333 78999999999762 23344566677789999
Q ss_pred EEEEecccCC
Q psy12559 82 IAFINKLDRL 91 (610)
Q Consensus 82 i~~iNKiDr~ 91 (610)
+++.||+|+.
T Consensus 112 ilv~nK~Dl~ 121 (165)
T 2wji_A 112 LLALNKMDLA 121 (165)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEchHhc
Confidence 9999999964
No 90
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.06 E-value=4.2e-10 Score=111.62 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=71.5
Q ss_pred hcceeecceeEEEecCeeEEEecCCCC--------cCcHHHHHHHH----hhcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGH--------VDFTVEVERAL----RVLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh--------~dF~~ev~~al----~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
.|.|.......+.|++..++||||||. .+|..++.+++ +.+|++|+|+|+.. ...++..+++.+.+.
T Consensus 54 ~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~ 132 (247)
T 3lxw_A 54 TSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDM 132 (247)
T ss_dssp ---CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHH
T ss_pred CCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHH
Confidence 467777777888999999999999998 66777888887 89999999999974 777788888877764
Q ss_pred ------CCCeEEEEecccCCCCCHHHH
Q psy12559 78 ------DVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 78 ------~ip~i~~iNKiDr~~~~~~~~ 98 (610)
+.|+|+|.||+|+.+.+.++.
T Consensus 133 ~~~~~~~~~iilv~nK~Dl~~~~~~~~ 159 (247)
T 3lxw_A 133 FGEDVLKWMVIVFTRKEDLAGGSLHDY 159 (247)
T ss_dssp HCGGGGGGEEEEEECGGGGTTCCHHHH
T ss_pred hChhhhccEEEEEEchHhcCCCCHHHH
Confidence 789999999999987665443
No 91
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.06 E-value=4.9e-10 Score=104.46 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=61.5
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHH--------HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc---C
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVE--------VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY---D 78 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~e--------v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~---~ 78 (610)
.|+|.......+.+++..+.++||||..++... +...++.+|++++|+|+..+...+...+|..+.+. +
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~ 115 (172)
T 2gj8_A 36 AGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK 115 (172)
T ss_dssp TTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT
T ss_pred CCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 355555555667788889999999998764221 23467899999999999987766656666655543 6
Q ss_pred CCeEEEEecccCC
Q psy12559 79 VPCIAFINKLDRL 91 (610)
Q Consensus 79 ip~i~~iNKiDr~ 91 (610)
+|+++++||+|+.
T Consensus 116 ~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 116 LPITVVRNKADIT 128 (172)
T ss_dssp CCEEEEEECHHHH
T ss_pred CCEEEEEECccCC
Confidence 9999999999974
No 92
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.06 E-value=4.3e-10 Score=105.32 Aligned_cols=67 Identities=24% Similarity=0.368 Sum_probs=52.7
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-----HHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-----LTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-----~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..++|+||||+.+|.......++.+|++++|+|+..+-..+. ..+.+.....++|+++++||+|+..
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 457779999999999889999999999999999998643322 2233333457899999999999863
No 93
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.06 E-value=6.7e-10 Score=104.23 Aligned_cols=80 Identities=21% Similarity=0.135 Sum_probs=60.6
Q ss_pred ceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHH---HhcCCCeEEEE
Q psy12559 12 ITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQM---KRYDVPCIAFI 85 (610)
Q Consensus 12 iTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~---~~~~ip~i~~i 85 (610)
++.......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+......+....| ..+ ...++|+++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 122 (186)
T 2bme_A 43 IGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122 (186)
T ss_dssp SEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 34444444555555 6899999999999999999999999999999999986554443333 222 34689999999
Q ss_pred ecccCC
Q psy12559 86 NKLDRL 91 (610)
Q Consensus 86 NKiDr~ 91 (610)
||+|+.
T Consensus 123 nK~Dl~ 128 (186)
T 2bme_A 123 NKKDLD 128 (186)
T ss_dssp ECGGGG
T ss_pred ECcccc
Confidence 999975
No 94
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.06 E-value=5.6e-10 Score=102.29 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=52.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHH----HHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN----RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~----~~~~~~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+.+|.......++.+|++++|+|+...-..+. ..++ +.+...++|+++++||+|+.
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 3569999999999999999999999999999999987543222 2223 33333589999999999975
No 95
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.06 E-value=6.9e-10 Score=101.87 Aligned_cols=68 Identities=25% Similarity=0.257 Sum_probs=53.2
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH----hcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
+.+.++|+||||+.+|.......++.+|++++|+|+...-..+. ..+++.+. ..++|+++++||+|+.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 35689999999999999999999999999999999987433222 22333333 3489999999999985
No 96
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.05 E-value=1.1e-09 Score=101.75 Aligned_cols=81 Identities=19% Similarity=0.129 Sum_probs=59.7
Q ss_pred cceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEE
Q psy12559 11 GITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAF 84 (610)
Q Consensus 11 giTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~ 84 (610)
.+++......+.+++ ..+.|+||||+.+|.......++.+|++|+|+|+......+.. .++..+.. .++|++++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 125 (179)
T 2y8e_A 46 TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125 (179)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEE
T ss_pred ceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344444444555555 6899999999999999889999999999999999875443332 23333332 48999999
Q ss_pred EecccCC
Q psy12559 85 INKLDRL 91 (610)
Q Consensus 85 iNKiDr~ 91 (610)
+||+|+.
T Consensus 126 ~nK~Dl~ 132 (179)
T 2y8e_A 126 GNKTDLS 132 (179)
T ss_dssp EECGGGG
T ss_pred EECCccc
Confidence 9999975
No 97
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.05 E-value=2.6e-09 Score=104.22 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=55.4
Q ss_pred ceeecceeEEEecCeeEEEecCCCCcCc------H---HHHHHHHhhcCEEEEEEecCCCcchh---hHHHHHHHHhc--
Q psy12559 12 ITIQSAATYTLWKDHNINIIDTPGHVDF------T---VEVERALRVLDGAILVLCAVGGVQSQ---TLTVNRQMKRY-- 77 (610)
Q Consensus 12 iTi~s~~~~~~~~~~~inlIDTPGh~dF------~---~ev~~al~~~D~ailVvDa~~Gv~~q---t~~v~~~~~~~-- 77 (610)
.|.......+.+++..++|+||||+.++ . ..+....+.+|++|+|+|+......+ ...+++.+...
T Consensus 62 ~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~ 141 (228)
T 2qu8_A 62 TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS 141 (228)
T ss_dssp ---CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-
T ss_pred cceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc
Confidence 3444444455667899999999999432 1 12233357789999999998865432 33455666665
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+++++||+|+..
T Consensus 142 ~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 142 NKSIVIGFNKIDKCN 156 (228)
T ss_dssp CCCEEEEEECGGGCC
T ss_pred CCcEEEEEeCcccCC
Confidence 899999999999863
No 98
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.05 E-value=7.1e-11 Score=114.70 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=64.1
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh--cCCCeEEEEec
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR--YDVPCIAFINK 87 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~--~~ip~i~~iNK 87 (610)
|+|.......+.++++.++|+||||+.+|.......++.+|++|+|+|+..+...+....| ..+.+ .++|+++|+||
T Consensus 49 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK 128 (221)
T 3gj0_A 49 GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNK 128 (221)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred ceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 5555555555555678999999999999988888899999999999999987665554444 33333 28999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 129 ~Dl~~ 133 (221)
T 3gj0_A 129 VDIKD 133 (221)
T ss_dssp TTSSS
T ss_pred Ccccc
Confidence 99864
No 99
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.05 E-value=1.3e-09 Score=104.32 Aligned_cols=77 Identities=17% Similarity=0.122 Sum_probs=59.3
Q ss_pred ecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecc
Q psy12559 15 QSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKL 88 (610)
Q Consensus 15 ~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKi 88 (610)
......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+...-..+. ..++..+.+ .++|+++++||+
T Consensus 65 ~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 65 DFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 33344556665 689999999999999999999999999999999987544333 233444443 568999999999
Q ss_pred cCC
Q psy12559 89 DRL 91 (610)
Q Consensus 89 Dr~ 91 (610)
|+.
T Consensus 145 Dl~ 147 (201)
T 2hup_A 145 DLS 147 (201)
T ss_dssp TCG
T ss_pred ccc
Confidence 975
No 100
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=4.4e-10 Score=106.22 Aligned_cols=75 Identities=20% Similarity=0.158 Sum_probs=57.6
Q ss_pred ceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh----cCCCeEEEEecccCC
Q psy12559 17 AATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 17 ~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~----~~ip~i~~iNKiDr~ 91 (610)
..+.+......+.|+||||+.+|.......++.+|++|+|+|+......+...-| +.+.. .++|+++++||+|+.
T Consensus 55 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 55 KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 3333444457899999999999988889999999999999999886544443333 44443 478999999999985
No 101
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.04 E-value=1.1e-09 Score=100.41 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=49.8
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH----hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
.+.++|+||||+.+|.......++.+|++++|+|+...-..+.. .++..+. ..++|+++++||+|+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 35899999999999999999999999999999999875433322 2223332 2489999999999975
No 102
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.04 E-value=1.1e-09 Score=103.95 Aligned_cols=64 Identities=23% Similarity=0.193 Sum_probs=53.4
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHH-hcCCCeEEEEeccc
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK-RYDVPCIAFINKLD 89 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~-~~~ip~i~~iNKiD 89 (610)
..++|+||||+.+|.......++.+|++|+|+|+..+...+... ++..+. ..++|+++++||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 78999999999999999999999999999999999876555433 334443 35689999999999
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.04 E-value=3.9e-10 Score=123.52 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=63.2
Q ss_pred eeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh----cCCCeEEEEec
Q psy12559 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINK 87 (610)
Q Consensus 13 Ti~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~----~~ip~i~~iNK 87 (610)
|+......+.++++.++|+||||+.+|.......++.+|++|+|+|++..-..+... .|..+.+ .++|+|+|+||
T Consensus 353 T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK 432 (497)
T 3lvq_E 353 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 432 (497)
T ss_dssp CSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred ccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEEC
Confidence 455556677889999999999999999988888999999999999999865443322 3333322 48999999999
Q ss_pred ccCCC
Q psy12559 88 LDRLG 92 (610)
Q Consensus 88 iDr~~ 92 (610)
+|+..
T Consensus 433 ~Dl~~ 437 (497)
T 3lvq_E 433 QDLPD 437 (497)
T ss_dssp CSSSS
T ss_pred CCCCc
Confidence 99874
No 104
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.03 E-value=1.9e-09 Score=100.08 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=60.9
Q ss_pred hcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh-------cCC
Q psy12559 10 RGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-------YDV 79 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~-------~~i 79 (610)
..+++......+.+++ ..+.|+||||+.+|.......++.+|++++|+|+..+...+...-| +.+.. .++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (177)
T 1wms_A 38 HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117 (177)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTS
T ss_pred CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCC
Confidence 3444444445555655 5899999999999999888899999999999999987654443323 33322 678
Q ss_pred CeEEEEecccCC
Q psy12559 80 PCIAFINKLDRL 91 (610)
Q Consensus 80 p~i~~iNKiDr~ 91 (610)
|+++++||+|+.
T Consensus 118 p~i~v~nK~Dl~ 129 (177)
T 1wms_A 118 PFVILGNKIDIS 129 (177)
T ss_dssp CEEEEEECTTCS
T ss_pred cEEEEEECCccc
Confidence 999999999986
No 105
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.03 E-value=9.1e-10 Score=103.37 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=49.2
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH----hcCCCeEEEEecccCCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRLG 92 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~----~~~ip~i~~iNKiDr~~ 92 (610)
..++|+||||+.+|.......++.+|++++|+|+...-..+.. .++..+. ..++|+++++||+|+..
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 4578899999999999999999999999999999875433332 2223332 35899999999999863
No 106
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.03 E-value=1.4e-09 Score=101.80 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=54.3
Q ss_pred EEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHH----HhcCCCeEEEEecccCC
Q psy12559 21 TLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQM----KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~----~~~~ip~i~~iNKiDr~ 91 (610)
+.+++ +.++|+||||+.+|.......++.+|++++|+|+...-..+.. .++..+ ...++|+++++||+|+.
T Consensus 59 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 59 VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp EEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred EEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 34444 5899999999999999999999999999999999875433222 222222 23489999999999975
No 107
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=105.93 Aligned_cols=84 Identities=19% Similarity=0.120 Sum_probs=64.7
Q ss_pred HHhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHhc--CCCeE
Q psy12559 8 RQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKRY--DVPCI 82 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~~--~ip~i 82 (610)
...++|.......+.+++ +.++|+||||+.+|.......++.+|++|+|+|+..+...+... ++..+.+. ++|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i 117 (181)
T 3tw8_B 38 YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI 117 (181)
T ss_dssp CTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred cCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 345566666666777777 78999999999999888888899999999999999865544433 33334333 58999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++||+|..
T Consensus 118 lv~nK~Dl~ 126 (181)
T 3tw8_B 118 LVGNKNDDP 126 (181)
T ss_dssp EEEECTTCG
T ss_pred EEEECCCCc
Confidence 999999975
No 108
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=5.7e-10 Score=107.23 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=61.0
Q ss_pred cceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEE
Q psy12559 11 GITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAF 84 (610)
Q Consensus 11 giTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~ 84 (610)
.++.......+.+++ ..+.|+||||+.+|.......++.+|++|+|+|+..+...+. ..++..+.. .++|++++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 131 (213)
T 3cph_A 52 TIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLV 131 (213)
T ss_dssp CCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEE
T ss_pred cccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 344444445566666 689999999999998888899999999999999987654333 233444443 37899999
Q ss_pred EecccCC
Q psy12559 85 INKLDRL 91 (610)
Q Consensus 85 iNKiDr~ 91 (610)
+||+|+.
T Consensus 132 ~nK~Dl~ 138 (213)
T 3cph_A 132 GNKSDME 138 (213)
T ss_dssp EECTTCS
T ss_pred EECCCCc
Confidence 9999974
No 109
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.02 E-value=1.7e-09 Score=98.82 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=53.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
.+.++++||||+.+|.......++.+|++++|+|+...-..+. ..+++.+.. .++|+++++||+|+..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 4568999999999999989999999999999999987543332 333344433 3799999999999864
No 110
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.02 E-value=1.3e-09 Score=118.11 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=68.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCc-CcH--------HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHV-DFT--------VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP 80 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~-dF~--------~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip 80 (610)
.|+|.+.....+.+++..++|+||||+. ++. ..+...++.+|++|+|+|+..+...+...+|+.+ .++|
T Consensus 275 ~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p 352 (482)
T 1xzp_A 275 PGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR 352 (482)
T ss_dssp SCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS
T ss_pred CCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC
Confidence 4678888888889999999999999998 664 2356678899999999999998887888888766 4899
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
+|+++||+|+..
T Consensus 353 iivV~NK~DL~~ 364 (482)
T 1xzp_A 353 YLVVINKVDVVE 364 (482)
T ss_dssp EEEEEEECSSCC
T ss_pred EEEEEECccccc
Confidence 999999999863
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.02 E-value=5.6e-10 Score=105.02 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=61.4
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHH------HHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~------ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
.|+|++.....+.+++..++++||||+.+|.. -....++ .+|++++|+|+.. ..+...++..+.+.++|+
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pi 115 (188)
T 2wjg_A 38 PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANL 115 (188)
T ss_dssp TTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCE
T ss_pred CCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCE
Confidence 46677777778888999999999999998841 1223333 4899999999875 233455667777789999
Q ss_pred EEEEecccCC
Q psy12559 82 IAFINKLDRL 91 (610)
Q Consensus 82 i~~iNKiDr~ 91 (610)
+++.||+|..
T Consensus 116 ilv~nK~Dl~ 125 (188)
T 2wjg_A 116 LLALNKMDLA 125 (188)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEhhhcc
Confidence 9999999964
No 112
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.01 E-value=7.3e-10 Score=104.89 Aligned_cols=71 Identities=17% Similarity=0.032 Sum_probs=56.0
Q ss_pred EEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 21 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
+......++|+||||+.+|.......++.+|++|+|+|+......+. ..+++.+.. .++|+++++||+|+.
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 69 LGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp ETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 33356789999999999999888999999999999999988654333 334444443 378999999999975
No 113
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.01 E-value=7.9e-10 Score=101.80 Aligned_cols=81 Identities=19% Similarity=0.078 Sum_probs=58.9
Q ss_pred cceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEE
Q psy12559 11 GITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAF 84 (610)
Q Consensus 11 giTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~ 84 (610)
.++.......+.+++ ..+.|+||||+.+|.......++.+|++++|+|+...-..+. ..++..+.+ .++|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 114 (170)
T 1g16_A 35 TIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114 (170)
T ss_dssp ---CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 334344444555554 578999999999998888899999999999999987654333 333444443 37899999
Q ss_pred EecccCC
Q psy12559 85 INKLDRL 91 (610)
Q Consensus 85 iNKiDr~ 91 (610)
+||+|+.
T Consensus 115 ~nK~Dl~ 121 (170)
T 1g16_A 115 GNKSDME 121 (170)
T ss_dssp EECTTCT
T ss_pred EECccCC
Confidence 9999984
No 114
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.01 E-value=5.3e-10 Score=102.77 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=53.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh--cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR--YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~--~~ip~i~~iNKiDr~ 91 (610)
...+.|+||||+.+|.......++.+|++++|+|+...-..+.. .+++.+.. .++|+++++||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 46899999999999988888899999999999999876533332 23333433 489999999999975
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.01 E-value=3.6e-10 Score=105.91 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=54.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
...++|+||||+.+|.......++.+|++++|+|+..+...+.. .++..+... ++|+++++||+|+..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 45677999999999988777888999999999999886555443 344555544 899999999999864
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.01 E-value=2.8e-10 Score=114.40 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=59.4
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH------HHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV------EVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 82 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~------ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i 82 (610)
|+|+......+.+ +..++|+||||+.+|.. -....++ .+|++++|+|++.. .....++.++.+.++|++
T Consensus 35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~i 111 (272)
T 3b1v_A 35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVT 111 (272)
T ss_dssp CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEE
T ss_pred CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEE
Confidence 6777766666666 88999999999998852 2233344 49999999999862 234455677778899999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++||+|..
T Consensus 112 lv~NK~Dl~ 120 (272)
T 3b1v_A 112 IALNMIDVL 120 (272)
T ss_dssp EEEECHHHH
T ss_pred EEEEChhhC
Confidence 999999964
No 117
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=8.6e-10 Score=104.48 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
.+.+++ +.++|+||||+.+|.......++.+|++|+|+|+...-..+.. .++..+.+. ++|+++++||+|+..
T Consensus 58 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 58 SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred EEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 344444 7899999999999988888888999999999999876544333 344556555 899999999999874
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.00 E-value=6.5e-10 Score=104.94 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=55.0
Q ss_pred eeEEEecC--eeEEEecCCCCcCcH-HHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHH----hcCCCeEEEEeccc
Q psy12559 18 ATYTLWKD--HNINIIDTPGHVDFT-VEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK----RYDVPCIAFINKLD 89 (610)
Q Consensus 18 ~~~~~~~~--~~inlIDTPGh~dF~-~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~----~~~ip~i~~iNKiD 89 (610)
...+.+++ ..++|+||||+.+|. ......++.+|++|+|+|+......+... ++..+. ..++|+++++||+|
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 59 ERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 33444544 689999999999998 66778889999999999998754433322 223332 45799999999999
Q ss_pred CC
Q psy12559 90 RL 91 (610)
Q Consensus 90 r~ 91 (610)
+.
T Consensus 139 l~ 140 (189)
T 1z06_A 139 LR 140 (189)
T ss_dssp CG
T ss_pred cc
Confidence 85
No 119
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.00 E-value=6.1e-10 Score=105.37 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=56.3
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh---cCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
.+.+++ ..++|+||||+.+|.......++.+|++|+|+|+...-..+. ..++..+.. .++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 344444 689999999999998888899999999999999987654444 334444443 389999999999975
No 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.00 E-value=7.3e-10 Score=107.02 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=54.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh----cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~----~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+.+|.......++.+|++|+|+|+......+...-| +.+.. .++|+++|+||+|+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 57899999999999999999999999999999999886554443333 33332 578999999999975
No 121
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.99 E-value=3.1e-10 Score=116.58 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=61.3
Q ss_pred cceeEEEe---cCeeEEEecCCCCcC-------------cHHHHHHHHhhcCEEEEEEec-CCCcchhh-HHHHHHHHhc
Q psy12559 16 SAATYTLW---KDHNINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCA-VGGVQSQT-LTVNRQMKRY 77 (610)
Q Consensus 16 s~~~~~~~---~~~~inlIDTPGh~d-------------F~~ev~~al~~~D~ailVvDa-~~Gv~~qt-~~v~~~~~~~ 77 (610)
...+.+.+ .+..++|+||||+.+ |...+..+++.+|++++|+|+ ..+...+. ..+++.+...
T Consensus 118 ~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~ 197 (315)
T 1jwy_B 118 AQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE 197 (315)
T ss_dssp CCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS
T ss_pred CccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC
Confidence 33444444 457999999999875 566788899999999999997 66776555 4788888888
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
++|+++++||+|+..
T Consensus 198 ~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 198 GKRTIGVITKLDLMD 212 (315)
T ss_dssp CSSEEEEEECTTSSC
T ss_pred CCcEEEEEcCcccCC
Confidence 999999999999874
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.99 E-value=3.8e-09 Score=100.74 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=55.1
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHH----hcCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMK----RYDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~----~~~ip~i~~iNKiDr~ 91 (610)
.+.+++ +.++|+||||+.+|.......++.+|++++|+|+...-..+.. .++..+. ..++|+++++||+|+.
T Consensus 54 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 54 KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 344444 5899999999999999999999999999999999875433322 2223333 2489999999999975
No 123
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.99 E-value=6.1e-10 Score=102.70 Aligned_cols=72 Identities=22% Similarity=0.140 Sum_probs=48.3
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHH---hcCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMK---RYDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~---~~~ip~i~~iNKiDr~ 91 (610)
.+.+++ ..+.|+||||+.+|.......++.+|++++|+|+..+-..+... +++.+. ..++|+++++||+|+.
T Consensus 47 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 47 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 344443 57889999999999888888889999999999998865443333 333333 3579999999999975
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=3.3e-09 Score=100.56 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=54.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh-----cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR-----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~-----~~ip~i~~iNKiDr~~ 92 (610)
..+.++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+|..+.. .++|+++++||+|+..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 34689999999999999999999999999999999987543332 234443333 3789999999999863
No 125
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.99 E-value=4.7e-10 Score=104.87 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=48.7
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-----HHHHHHHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-----LTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-----~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+.++|+||||+.+|.......++.+|++++|+|+...-..+. ..+.+.+...++|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 678999999999997767778889999999999987433222 233334444589999999999975
No 126
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.98 E-value=3.8e-10 Score=105.45 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=51.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
....++|+||||+.+|.......++.+|++++|+|+...-..+.. .++..+... ++|+++++||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 346677999999999988888889999999999999876544443 244444442 899999999999764
No 127
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.97 E-value=2.5e-10 Score=109.19 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=57.6
Q ss_pred eecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh-------cCCCeEE
Q psy12559 14 IQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-------YDVPCIA 83 (610)
Q Consensus 14 i~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~-------~~ip~i~ 83 (610)
.......+.+++ +.++|+||||+.+|.......++.+|++|+|+|+..+...+....| ..+.. .++|+++
T Consensus 43 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (207)
T 1vg8_A 43 ADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122 (207)
T ss_dssp EEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred ceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 333334444443 6899999999999988778888999999999999887654444333 22221 4789999
Q ss_pred EEecccCC
Q psy12559 84 FINKLDRL 91 (610)
Q Consensus 84 ~iNKiDr~ 91 (610)
++||+|+.
T Consensus 123 v~nK~Dl~ 130 (207)
T 1vg8_A 123 LGNKIDLE 130 (207)
T ss_dssp EEECTTSS
T ss_pred EEECCCCc
Confidence 99999986
No 128
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.97 E-value=1.6e-09 Score=100.74 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=54.1
Q ss_pred EEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHH----HHHHhcCCCeEEEEecccCC
Q psy12559 21 TLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVN----RQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~----~~~~~~~ip~i~~iNKiDr~ 91 (610)
+.+++ ..++|+||||+.+|.......++.+|++++|+|+...-.... ..++ +.....++|+++++||+|+.
T Consensus 50 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 50 CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred EEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 44554 578999999999998888888999999999999987533222 2222 33334689999999999975
No 129
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.97 E-value=1.7e-09 Score=100.73 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=49.4
Q ss_pred eecceeEEEec---CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh-------cCCCeE
Q psy12559 14 IQSAATYTLWK---DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR-------YDVPCI 82 (610)
Q Consensus 14 i~s~~~~~~~~---~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~-------~~ip~i 82 (610)
.......+.++ ...++|+||||+.+|.......++.+|++|+|+|+..+...+...-| ..+.. .++|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i 122 (182)
T 1ky3_A 43 ADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122 (182)
T ss_dssp CSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE
T ss_pred eEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE
Confidence 33334445554 46899999999999998888889999999999999887654443333 33322 678999
Q ss_pred EEEecccCC
Q psy12559 83 AFINKLDRL 91 (610)
Q Consensus 83 ~~iNKiDr~ 91 (610)
+++||+|+.
T Consensus 123 lv~nK~Dl~ 131 (182)
T 1ky3_A 123 ILGNKIDAE 131 (182)
T ss_dssp EEEECTTSC
T ss_pred EEEECCccc
Confidence 999999985
No 130
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.3e-09 Score=102.62 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=58.6
Q ss_pred eecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEec
Q psy12559 14 IQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINK 87 (610)
Q Consensus 14 i~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNK 87 (610)
++.....+.+++ ..++|+||||+.+|.......++.+|++|+|+|+......+.. .+++.+.. .++|++++.||
T Consensus 61 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK 140 (201)
T 2ew1_A 61 VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 140 (201)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred eeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 333444555655 5899999999999999888999999999999999876544332 23333332 47899999999
Q ss_pred ccCC
Q psy12559 88 LDRL 91 (610)
Q Consensus 88 iDr~ 91 (610)
+|+.
T Consensus 141 ~Dl~ 144 (201)
T 2ew1_A 141 IDLA 144 (201)
T ss_dssp GGGG
T ss_pred CCCc
Confidence 9975
No 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.97 E-value=3.4e-09 Score=100.78 Aligned_cols=82 Identities=22% Similarity=0.195 Sum_probs=60.7
Q ss_pred cceeecceeEEEe---cCeeEEEecCCCCcCcHHHH---HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh-----cCC
Q psy12559 11 GITIQSAATYTLW---KDHNINIIDTPGHVDFTVEV---ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDV 79 (610)
Q Consensus 11 giTi~s~~~~~~~---~~~~inlIDTPGh~dF~~ev---~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~-----~~i 79 (610)
|++.......+.+ +...++|+||||+.+|.... ...++.+|++|+|+|+..........+.+.+.+ .++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (196)
T 3llu_A 51 FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130 (196)
T ss_dssp GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444444443 45799999999999998777 788999999999999998743333444443333 389
Q ss_pred CeEEEEecccCCC
Q psy12559 80 PCIAFINKLDRLG 92 (610)
Q Consensus 80 p~i~~iNKiDr~~ 92 (610)
|+++|.||+|+..
T Consensus 131 piilv~nK~Dl~~ 143 (196)
T 3llu_A 131 NFEVFIHKVDGLS 143 (196)
T ss_dssp EEEEEEECGGGSC
T ss_pred cEEEEEeccccCc
Confidence 9999999999874
No 132
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.97 E-value=9.5e-10 Score=105.30 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=60.2
Q ss_pred ceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHHh---cCCCeEEEE
Q psy12559 12 ITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMKR---YDVPCIAFI 85 (610)
Q Consensus 12 iTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~~---~~ip~i~~i 85 (610)
+++......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+..+...+...-| ..+.. .++|+++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~ 120 (206)
T 2bcg_Y 41 IGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120 (206)
T ss_dssp SCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 33333444555555 5899999999999988888889999999999999986554443333 34433 468999999
Q ss_pred ecccCCC
Q psy12559 86 NKLDRLG 92 (610)
Q Consensus 86 NKiDr~~ 92 (610)
||+|+..
T Consensus 121 nK~Dl~~ 127 (206)
T 2bcg_Y 121 NKCDLKD 127 (206)
T ss_dssp ECTTCTT
T ss_pred ECCCCcc
Confidence 9999863
No 133
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.97 E-value=2.9e-09 Score=98.52 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=44.9
Q ss_pred CeeEEEecCCCCcCc--HHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHhc----CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDF--TVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKRY----DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF--~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~~----~ip~i~~iNKiDr~~ 92 (610)
...++++||||+..+ .......++.+|++++|+|+...-..+. ..++..+.+. ++|+++++||+|+..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 357899999999884 4444556678999999999986443322 3344445543 899999999999863
No 134
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.96 E-value=5.1e-10 Score=108.22 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=54.2
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH---hcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---RYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~---~~~ip~i~~iNKiDr~ 91 (610)
..++|+||||+.+|.......++.+|++|+|+|+..+...+...-| +.+. ..++|+++|+||+|+.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 6799999999999988888889999999999999988766654333 3333 3479999999999976
No 135
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.96 E-value=9.9e-10 Score=105.30 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
.+.++|+||||+.+|.......++.+|++|+|+|+..+...+.. .++..+... ++|+++++||+|+..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHT
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhcc
Confidence 35666999999999988888889999999999999987665554 344555554 899999999999864
No 136
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.96 E-value=1.7e-09 Score=99.40 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=39.8
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
....++++||||+.+|.......++.+|++++|+|+...-..+. ..++..+.+ .++|+++++||+|+..
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 45678999999999999888889999999999999986433222 334444443 4799999999999863
No 137
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.95 E-value=7.5e-10 Score=104.97 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=54.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
.+.++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+...+... ++|+++++||+|+..
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 4567999999999999888889999999999999998654444 2334444443 799999999999864
No 138
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.95 E-value=4.3e-09 Score=99.14 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=45.7
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHH-HHHHHh----cCCCeEEEEecccCCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV-NRQMKR----YDVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v-~~~~~~----~~ip~i~~iNKiDr~~ 92 (610)
.+.+++ +.++|+||||+.+|.......++.+|++++|+|+......+.... ++.+.. .++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 61 QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 334444 569999999999999999999999999999999987654443333 333332 4799999999999763
No 139
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=103.82 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=58.2
Q ss_pred ceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh---cCCCeEEEE
Q psy12559 12 ITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFI 85 (610)
Q Consensus 12 iTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~---~~ip~i~~i 85 (610)
+++......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+......+... ++..+.. .++|+++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~ 137 (200)
T 2o52_A 58 IGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137 (200)
T ss_dssp --CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEE
T ss_pred ccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 33333334444555 78999999999888877888899999999999998865544433 3333332 479999999
Q ss_pred ecccCC
Q psy12559 86 NKLDRL 91 (610)
Q Consensus 86 NKiDr~ 91 (610)
||+|+.
T Consensus 138 nK~Dl~ 143 (200)
T 2o52_A 138 NKKDLD 143 (200)
T ss_dssp ECGGGG
T ss_pred ECCCcc
Confidence 999975
No 140
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.93 E-value=1.6e-09 Score=103.55 Aligned_cols=77 Identities=14% Similarity=0.057 Sum_probs=55.9
Q ss_pred cceeEEEec----CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh------cCCCeEEE
Q psy12559 16 SAATYTLWK----DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR------YDVPCIAF 84 (610)
Q Consensus 16 s~~~~~~~~----~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~------~~ip~i~~ 84 (610)
.....+.++ .+.++|+||||+.+|.......++.+|++|+|+|+..+...+. ..++..+.. .++|++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 59 VVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp --CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 344455665 4689999999999999888888999999999999988764333 334444443 58899999
Q ss_pred EecccCCC
Q psy12559 85 INKLDRLG 92 (610)
Q Consensus 85 iNKiDr~~ 92 (610)
+||+|+..
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999763
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.93 E-value=1.4e-09 Score=109.60 Aligned_cols=163 Identities=14% Similarity=0.227 Sum_probs=94.1
Q ss_pred HhcceeecceeEEEecCe--eEEEecCCCCcCcHH-------HH-------HHHHhh-------------cCEEEEEEec
Q psy12559 9 QRGITIQSAATYTLWKDH--NINIIDTPGHVDFTV-------EV-------ERALRV-------------LDGAILVLCA 59 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~--~inlIDTPGh~dF~~-------ev-------~~al~~-------------~D~ailVvDa 59 (610)
..+++++.....+.+++. .++|+||||+.|+.. -+ ...++. +|+++++|+.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 566777777777777664 899999999965421 11 333443 6788988865
Q ss_pred C-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCC-CHHHHHHHHHHHhCC-CeeEeecc--------------------
Q psy12559 60 V-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGH-NAAFLQIP-------------------- 116 (610)
Q Consensus 60 ~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~-~~~~~~~~i~~~l~~-~~~~~~~p-------------------- 116 (610)
. .|....+..+++.+.. ++|+|+|+||+|+... ......+.+++.+.. +...++++
T Consensus 126 ~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 126 SGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp CCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred CCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 5 5899999999998887 9999999999998742 233344555555421 11112222
Q ss_pred --ccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHHHHHHH-----HHHhcCCHHHHHhh
Q psy12559 117 --IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELI-----EHVAEGDEILGEMF 180 (610)
Q Consensus 117 --~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-----e~~~~~dd~l~e~~ 180 (610)
+++...+....+.+..+.|.|. ..+++..........|+.|+ |.....++.++|.|
T Consensus 205 ~vv~s~~~~~~~~~~~~~r~y~wg--------~~~ve~~~~~df~~lr~~l~~~~~~~l~~~t~~~~ye~y 267 (274)
T 3t5d_A 205 AVVGSNTIIEVNGKRVRGRQYPWG--------VAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENY 267 (274)
T ss_dssp ECCCCCCC--------CEEECSSC--------EEESSCTTTCSHHHHHHTTTTTTHHHHHHHHHHTHHHHH
T ss_pred EEEEeeeEEeeCCeEEEeeecccc--------eEEecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455556666662 12233222223345666666 77777777888877
No 142
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.7e-09 Score=105.08 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=57.3
Q ss_pred eeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh---cCCCeEEEEe
Q psy12559 13 TIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR---YDVPCIAFIN 86 (610)
Q Consensus 13 Ti~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~---~~ip~i~~iN 86 (610)
++......+.+++ ..++|+||||+.+|.......++.+|++|+|+|+..+...+... ++..+.. .++|+++|+|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 126 (223)
T 3cpj_B 47 GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126 (223)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEEC
T ss_pred cceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3333344555655 68999999999999888888899999999999998866544433 3344443 3789999999
Q ss_pred cccCC
Q psy12559 87 KLDRL 91 (610)
Q Consensus 87 KiDr~ 91 (610)
|+|+.
T Consensus 127 K~Dl~ 131 (223)
T 3cpj_B 127 KSDLA 131 (223)
T ss_dssp CGGGG
T ss_pred Ccccc
Confidence 99975
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.92 E-value=1.1e-09 Score=117.99 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=57.7
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHH--------HHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVER--------ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC 81 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~--------al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~ 81 (610)
.|+|.+.....+.++++.++|+||||+.++...+.. .++.+|++|+|+|+..+...+...+++.+.. .|+
T Consensus 256 ~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~pi 333 (462)
T 3geh_A 256 PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPL 333 (462)
T ss_dssp TTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCE
T ss_pred CCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcE
Confidence 456666666678889999999999999887655443 4677999999999999999988888887754 799
Q ss_pred EEEEecccCCC
Q psy12559 82 IAFINKLDRLG 92 (610)
Q Consensus 82 i~~iNKiDr~~ 92 (610)
++|+||+|+..
T Consensus 334 ivV~NK~Dl~~ 344 (462)
T 3geh_A 334 ILVMNKIDLVE 344 (462)
T ss_dssp EEEEECTTSSC
T ss_pred EEEEECCCCCc
Confidence 99999999874
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.91 E-value=1e-09 Score=105.57 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=53.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
.+.++|+||||+.+|.......++.+|++|+|+|+...-..+.. .+++.+... ++|+++++||+|+..
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 46899999999999988888889999999999999876544443 344555544 899999999999753
No 145
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.91 E-value=1.7e-10 Score=110.09 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=60.8
Q ss_pred HHHhcceeecceeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHhc---CCC
Q psy12559 7 ERQRGITIQSAATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKRY---DVP 80 (610)
Q Consensus 7 E~eRgiTi~s~~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~~---~ip 80 (610)
+...+++.......+.+++ +.++|+||||+.+|.......++.+|++|+|+|+......+... +++.+... ++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 140 (199)
T 3l0i_B 61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 140 (199)
T ss_dssp HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE
T ss_pred CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 3445556556666666666 67999999999999888888899999999999999866544433 33444433 789
Q ss_pred eEEEEecccCCC
Q psy12559 81 CIAFINKLDRLG 92 (610)
Q Consensus 81 ~i~~iNKiDr~~ 92 (610)
+++++||+|+..
T Consensus 141 ~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 141 KLLVGNKCDLTT 152 (199)
T ss_dssp EEEC-CCSSCC-
T ss_pred EEEEEECccCCc
Confidence 999999999863
No 146
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.90 E-value=7.5e-10 Score=105.75 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=52.8
Q ss_pred EEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHH-HHHHHHh----cCCCeEEEEecccCC
Q psy12559 21 TLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLT-VNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 21 ~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~-v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
+....+.++|+||||+.+|.......++.+|++|+|+|+...-..+... +++.+.. .++|+++++||+|+.
T Consensus 67 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 67 LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp ----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred ECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 3445688999999999999888888899999999999998754433332 3333333 479999999999975
No 147
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.90 E-value=6.8e-09 Score=95.53 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=44.7
Q ss_pred CeeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
.+.++++||||+.+|.. .....++.+|++++|+|+...-..+. ..++..+.+ .++|+++++||+|+.
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 46788999999999876 44455788999999999987433222 233344433 389999999999975
No 148
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.89 E-value=2.5e-09 Score=102.08 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=54.3
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
...++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+++.+... ++|+++++||+|+..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 3589999999999998888888899999999999987433332 3445555554 899999999999874
No 149
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.87 E-value=1.2e-08 Score=96.67 Aligned_cols=67 Identities=27% Similarity=0.283 Sum_probs=50.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchh-hHHHHHHH----HhcCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQ-TLTVNRQM----KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~q-t~~v~~~~----~~~~ip~i~~iNKiDr~ 91 (610)
....++|+||||+.+ .......++.+|++++|+|+...-... ...+++.+ ...++|++++.||+|+.
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 347799999999998 666778889999999999998743222 12223333 23589999999999975
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.86 E-value=8.5e-10 Score=108.66 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=66.8
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcH-------HHHHHHHh----hcCEEEEEEecCCCcchhhHHHHHHHH--
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFT-------VEVERALR----VLDGAILVLCAVGGVQSQTLTVNRQMK-- 75 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~-------~ev~~al~----~~D~ailVvDa~~Gv~~qt~~v~~~~~-- 75 (610)
.+++|.......+.|++..++||||||+.+.. .++.+.+. .+|++|+|+|+.. ........++.+.
T Consensus 61 ~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~ 139 (239)
T 3lxx_A 61 AKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKM 139 (239)
T ss_dssp ----CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHH
T ss_pred CCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHH
Confidence 34788888888899999999999999987642 34444443 4599999999874 3344444443332
Q ss_pred ---hcCCCeEEEEecccCCCCC-HH-------HHHHHHHHHhCCCeeEeecc
Q psy12559 76 ---RYDVPCIAFINKLDRLGAD-PY-------RVINQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 76 ---~~~ip~i~~iNKiDr~~~~-~~-------~~~~~i~~~l~~~~~~~~~p 116 (610)
..+.|+++++||+|+.... .+ +.+..+.+.++.....++.+
T Consensus 140 ~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 140 FGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp HHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTT
T ss_pred hhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence 2456999999999997432 22 24566666666655444433
No 151
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=4.1e-09 Score=101.07 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=54.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
...+.|+||||+.+|.......++.+|++|+|+|+...-..+. ..++..+... ++|+++++||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 3688999999999998888888899999999999987543332 3444555544 899999999999864
No 152
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.83 E-value=6.9e-09 Score=100.16 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=40.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...++|+||||+.+|.......++.+|++|+|+|+...-..+.. .+++.+.. .++|+++|+||+|+..
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 35799999999999998888899999999999999876544443 23444443 3899999999999874
No 153
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.83 E-value=2.8e-08 Score=93.45 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=52.0
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
.+.+++ ..++|+||||+.+|. .++.+|++++|+|+...-..+. ..++..+.. .++|++++.||+|+.
T Consensus 59 ~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 59 EIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 445555 567889999999987 7788999999999998665555 444555554 478999999999975
No 154
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.82 E-value=2e-09 Score=122.11 Aligned_cols=72 Identities=36% Similarity=0.742 Sum_probs=66.1
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.|..++..+|+++.+|||++++.+|.+|+|.+|+||||+||||++++|+++||+++.+
T Consensus 404 ~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~ 475 (693)
T 2xex_A 404 PEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475 (693)
T ss_dssp CSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEE
Confidence 459999999999999999999999999999999999999999999999999999999999999999999864
No 155
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.82 E-value=4.3e-09 Score=101.69 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=55.8
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh--HHHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
..+.+.++|+||||+.+|.......++.+|++|+|+|+...-..+. ..+++.+... ++|++++.||+|+..
T Consensus 71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 3455789999999999998888888999999999999998655444 3334555544 899999999999863
No 156
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.82 E-value=4.9e-09 Score=99.82 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=55.7
Q ss_pred EEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 20 YTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 20 ~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
.+.+++ +.+.|+||||+.+|.......++.+|++|+|+|+...-..+.. .+++.+... ++|++++.||+|+..
T Consensus 60 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 60 VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred EEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 344555 4677999999999987777788899999999999876544443 344444443 899999999999864
No 157
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.81 E-value=5.2e-09 Score=106.37 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred CeeEEEecCCCCc-------------CcHHHHHHHHhhcCEEE-EEEecCCCcchhhH-HHHHHHHhcCCCeEEEEeccc
Q psy12559 25 DHNINIIDTPGHV-------------DFTVEVERALRVLDGAI-LVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 25 ~~~inlIDTPGh~-------------dF~~ev~~al~~~D~ai-lVvDa~~Gv~~qt~-~v~~~~~~~~ip~i~~iNKiD 89 (610)
...++||||||+. .|...+...++.+|.+| +|+|+..+...++. .+++.+...++|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4789999999974 34556777888888877 69999999888875 577888778999999999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
+..
T Consensus 204 l~~ 206 (299)
T 2aka_B 204 LMD 206 (299)
T ss_dssp GSC
T ss_pred cCC
Confidence 874
No 158
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.80 E-value=1.1e-08 Score=96.16 Aligned_cols=91 Identities=29% Similarity=0.423 Sum_probs=54.7
Q ss_pred cceeecceeEEEecCeeEEEecCCCC-----------cCcHHHHHHHHh----hcCEEEEEEecCCC-----------cc
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGH-----------VDFTVEVERALR----VLDGAILVLCAVGG-----------VQ 64 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh-----------~dF~~ev~~al~----~~D~ailVvDa~~G-----------v~ 64 (610)
|+|.... .+.++ .++++||||+ ..|.......++ .++.++.|+|+... ..
T Consensus 33 ~~t~~~~--~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~ 108 (190)
T 2cxx_A 33 GVTRKII--EIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI 108 (190)
T ss_dssp TCTTSCE--EEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCC
T ss_pred CccceeE--EEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCcc
Confidence 5554333 33343 7999999995 344444444444 35566666766432 22
Q ss_pred hhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHh
Q psy12559 65 SQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 106 (610)
Q Consensus 65 ~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l 106 (610)
.++..+++.+...++|+++++||+|+.... .+..+++.+.+
T Consensus 109 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~ 149 (190)
T 2cxx_A 109 PIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKF 149 (190)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHh
Confidence 334456666777899999999999987543 33344444433
No 159
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.80 E-value=4.3e-09 Score=119.43 Aligned_cols=72 Identities=39% Similarity=0.769 Sum_probs=69.1
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|+++.+|||++++.+|.+|++.+|+||||+||||++++|+++||+++.+
T Consensus 412 ~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~~ 483 (704)
T 2rdo_7 412 PEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANV 483 (704)
T ss_pred CCceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEE
Confidence 459999999999999999999999999999999999999999999999999999999999999999999864
No 160
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.79 E-value=1.2e-08 Score=105.85 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=60.0
Q ss_pred cceeecceeEEEecC-eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC----CcchhhHHHHHHHHh--
Q psy12559 11 GITIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG----GVQSQTLTVNRQMKR-- 76 (610)
Q Consensus 11 giTi~s~~~~~~~~~-~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~----Gv~~qt~~v~~~~~~-- 76 (610)
..|+......+.+.+ ..+.|+||||+.+ +..+..+.+..+|++|+|+|++. ....+...+++.+..
T Consensus 190 ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~ 269 (342)
T 1lnz_A 190 FTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 269 (342)
T ss_dssp SSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred ccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence 456666666677775 8999999999643 55666777788999999999975 222333445555554
Q ss_pred ---cCCCeEEEEecccCCC
Q psy12559 77 ---YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~~ 92 (610)
.++|+++++||+|+..
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp SSTTTSCBCBEEECTTSTT
T ss_pred hhhcCCCEEEEEECccCCC
Confidence 3799999999999863
No 161
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.26 E-value=7e-10 Score=106.13 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=55.3
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
....++|+||||+.+|.......++.+|++|+|+|+..+...+.. .++..+... ++|+++++||+|+..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 345677999999999998888899999999999999887655443 333444444 899999999999864
No 162
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.77 E-value=3.4e-08 Score=101.06 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=64.8
Q ss_pred HHhcceeecceeEEEe-cCeeEEEecCCCCcCc-----HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH----HHHh-
Q psy12559 8 RQRGITIQSAATYTLW-KDHNINIIDTPGHVDF-----TVEVERALRVLDGAILVLCAVGGVQSQTLTVNR----QMKR- 76 (610)
Q Consensus 8 ~eRgiTi~s~~~~~~~-~~~~inlIDTPGh~dF-----~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~----~~~~- 76 (610)
...|.|+......+.+ ++..++++||||+.+| .......++.+|++|+|+|+...-..+....|. .+..
T Consensus 33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~ 112 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY 112 (307)
T ss_dssp GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh
Confidence 3567788877777775 6789999999999998 344566678899999999999876555544432 2222
Q ss_pred -cCCCeEEEEecccCCC
Q psy12559 77 -YDVPCIAFINKLDRLG 92 (610)
Q Consensus 77 -~~ip~i~~iNKiDr~~ 92 (610)
.++|+++++||+|+..
T Consensus 113 ~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 113 SPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp CTTCEEEEEEECGGGSC
T ss_pred CCCCeEEEEEecccccc
Confidence 2899999999999874
No 163
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.76 E-value=5.9e-09 Score=120.62 Aligned_cols=70 Identities=34% Similarity=0.621 Sum_probs=67.4
Q ss_pred CcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHc-CCeeEC
Q psy12559 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREY-NCPVVL 610 (610)
Q Consensus 540 ~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~-~~~~~~ 610 (610)
.|+..++++|..+.|..++..+|+++.+|||++++..| +|+|.+|+||||+||||++++|+++| |+++.+
T Consensus 486 ~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~ 556 (842)
T 1n0u_A 486 SPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKI 556 (842)
T ss_dssp SCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEE
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEe
Confidence 49999999999999999999999999999999999999 89999999999999999999999999 999864
No 164
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.75 E-value=7.2e-09 Score=118.04 Aligned_cols=72 Identities=36% Similarity=0.701 Sum_probs=69.1
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+.+++++|.++.+..++..+|+++..+||++.+..|.+|+|++|.||||+||||++++|+++||+++.+
T Consensus 415 ~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev~v 486 (709)
T 4fn5_A 415 PEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEANI 486 (709)
T ss_dssp CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCBCC
T ss_pred CCcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceEEE
Confidence 469999999999999999999999999999999999999999999999999999999999999999999864
No 165
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.74 E-value=2e-08 Score=94.66 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=48.2
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh------cCCCeEEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR------YDVPCIAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~------~~ip~i~~iNKiDr~ 91 (610)
+...+.|+||||+.+|.. +.+.++.+|++|+|+|+...-..+.. .++..+.+ .++|++++.||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 346889999999988865 46788999999999999865433332 23344433 489999999999975
No 166
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.73 E-value=8.2e-08 Score=89.16 Aligned_cols=62 Identities=15% Similarity=0.038 Sum_probs=46.4
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH-HHHH---h---cCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN-RQMK---R---YDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~-~~~~---~---~~ip~i~~iNKiDr~ 91 (610)
...++|+||||+.. ...++.+|++|+|+|+...-..+....| +.+. . .++|++++.||+|+.
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 35789999999987 3567889999999999876544444333 2222 2 378999999999974
No 167
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.71 E-value=1.1e-07 Score=90.27 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=52.2
Q ss_pred eEEEecC--eeEEEecCCCCcCcHH-HHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccC
Q psy12559 19 TYTLWKD--HNINIIDTPGHVDFTV-EVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDR 90 (610)
Q Consensus 19 ~~~~~~~--~~inlIDTPGh~dF~~-ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr 90 (610)
..+.+++ ..+.++||||+.+|.. -....++.+|++|+|+|+...-..+. ..++..+.. .++|++++.||+|+
T Consensus 63 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 63 RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp EEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred EEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 3445554 5678889999998765 44556788999999999986433222 233444443 47999999999998
Q ss_pred CC
Q psy12559 91 LG 92 (610)
Q Consensus 91 ~~ 92 (610)
..
T Consensus 143 ~~ 144 (195)
T 3cbq_A 143 AR 144 (195)
T ss_dssp TT
T ss_pred cc
Confidence 63
No 168
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.70 E-value=7.1e-08 Score=93.40 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=52.9
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHH---hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMK---RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~---~~~ip~i~~iNKiDr~ 91 (610)
...++|+||+|...|..-....++.+|++++|.|...--.-+. ..+|..+. ..++|+|+|.||+|+.
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 4678999999999999988899999999999999886443333 33444443 3578999999999975
No 169
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.68 E-value=1.3e-08 Score=95.39 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=53.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
....+.|+||||+.+|.......++.+|++|+|+|+......+.. .+.+.+.+ .++|++++.||+|...
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 346899999999999987777788999999999999875544432 23344443 3799999999999863
No 170
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=98.67 E-value=2.2e-08 Score=101.40 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=65.3
Q ss_pred cCcceeeeeecccc----cc-----hhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeE
Q psy12559 539 HDPVVSMSIKAVNN----KD-----RDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVV 609 (610)
Q Consensus 539 ~~~~~~~~v~a~~~----~~-----~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~ 609 (610)
..|+..+++.|... .+ ..++..+|.++.++||++++..|.++++.+|+||||+||+|+.++|+++ |+++.
T Consensus 30 ~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~~~~v~G~GELHLeIl~ErLrrE-g~ev~ 108 (332)
T 3e3x_A 30 DEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENMRRE-GFELA 108 (332)
T ss_dssp CCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTTEEEEEESSHHHHHHHHHHHHHH-TBCEE
T ss_pred CCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCCeEEEEeeCHHHHHHHHHHHHhc-CceEE
Confidence 67999999999865 43 6799999999999999999999999999999999999999999999999 99986
Q ss_pred C
Q psy12559 610 L 610 (610)
Q Consensus 610 ~ 610 (610)
+
T Consensus 109 v 109 (332)
T 3e3x_A 109 V 109 (332)
T ss_dssp E
T ss_pred E
Confidence 4
No 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.67 E-value=3.3e-08 Score=101.68 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=55.5
Q ss_pred EEecCe--eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHhc--CCCeEEEEecccCCC
Q psy12559 21 TLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKRY--DVPCIAFINKLDRLG 92 (610)
Q Consensus 21 ~~~~~~--~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~~--~ip~i~~iNKiDr~~ 92 (610)
+..++. .++|+||||+.+|.......++.+|++++|+|+..+...+.. .++..+... ++|+++++||+|+..
T Consensus 196 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp EEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred EEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 344444 566999999999988888888999999999999987655443 233455444 899999999999753
No 172
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.66 E-value=2.5e-08 Score=109.31 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=66.6
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|...+++.|..+.+..++..+|++|++|||+ .+..|.+|+|.+|.|||++||||+++||+++||+++.+
T Consensus 392 ~~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~ 462 (528)
T 3tr5_A 392 FASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVY 462 (528)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEE
Confidence 358889999999999999999999999999997 88999999999999999999999999999999999864
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.65 E-value=2.1e-08 Score=110.01 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=64.6
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..+++.|..+.+..++..+|+++++||| +.+.+|.+|++.+|.|||++||||++++|+++||+++.+
T Consensus 393 ~~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~ 463 (529)
T 2h5e_A 393 FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVY 463 (529)
T ss_dssp ECCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEE
T ss_pred CCccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEE
Confidence 45899999999999999999999999999998 899999999999999999999999999999999999864
No 174
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.65 E-value=2.2e-08 Score=110.31 Aligned_cols=71 Identities=15% Similarity=0.349 Sum_probs=65.4
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|+++.+..++..+|+++.++|| +.+..|.+|+|.+|+||||+||||++++|+++||+++.|
T Consensus 411 ~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~ 481 (548)
T 3vqt_A 411 FAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVY 481 (548)
T ss_dssp ECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCcceeeeeeCCchhHHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEE
Confidence 35889999999999999999999999999988 567889999999999999999999999999999999753
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.63 E-value=2.2e-07 Score=97.15 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=56.8
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCc-----H---HHHHHHHhhcCEEEEEEecCCCc---chhhHHHHHHHHh--
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDF-----T---VEVERALRVLDGAILVLCAVGGV---QSQTLTVNRQMKR-- 76 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF-----~---~ev~~al~~~D~ailVvDa~~Gv---~~qt~~v~~~~~~-- 76 (610)
.+.|++...-.+.+++..+.++||||+.+. . ..+...++.+|.+++|+|++.+. ..|...+.+.+..
T Consensus 210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~ 289 (364)
T 2qtf_A 210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG 289 (364)
T ss_dssp ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC
Confidence 466777777788888999999999997331 1 22344578899999999998764 2232223333333
Q ss_pred -cCCCeEEEEecccCCCC
Q psy12559 77 -YDVPCIAFINKLDRLGA 93 (610)
Q Consensus 77 -~~ip~i~~iNKiDr~~~ 93 (610)
.++|+|+|.||+|+...
T Consensus 290 ~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKING 307 (364)
T ss_dssp CCSCCEEEEEECGGGCCS
T ss_pred cCCCCEEEEEECCCCCCc
Confidence 57899999999998743
No 176
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.62 E-value=5.8e-09 Score=117.24 Aligned_cols=72 Identities=17% Similarity=0.484 Sum_probs=68.8
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|+++.+|||++.+..|.++++.+|.||||+||||++++|+++||+++.+
T Consensus 341 p~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~ 412 (638)
T 3j25_A 341 PHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIEL 412 (638)
T ss_dssp CCCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEE
T ss_pred CCccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999999999864
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.61 E-value=1.9e-08 Score=105.05 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=47.1
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.++++.+.||||||... .....+..+|.+|+|+|+..+...|... . ...++|.++++||+|+.
T Consensus 168 ~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp HHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred hhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 44689999999999654 2334458999999999998776655433 1 12346999999999986
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.60 E-value=1.5e-07 Score=98.41 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=54.4
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH--------HHHHHHh-hcCEEEEEEecCCCc--chhh-HHHHHHHHh-c
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV--------EVERALR-VLDGAILVLCAVGGV--QSQT-LTVNRQMKR-Y 77 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~--------ev~~al~-~~D~ailVvDa~~Gv--~~qt-~~v~~~~~~-~ 77 (610)
+.|.......+.+++..+.++||||+.++.. ....++. .+|++++|+|+..+- ..+. ..++..+.. .
T Consensus 199 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~ 278 (357)
T 2e87_A 199 FTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF 278 (357)
T ss_dssp TCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT
T ss_pred CeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc
Confidence 3444444556667788999999999876521 2222333 589999999987643 3332 334444443 2
Q ss_pred -CCCeEEEEecccCC
Q psy12559 78 -DVPCIAFINKLDRL 91 (610)
Q Consensus 78 -~ip~i~~iNKiDr~ 91 (610)
++|+|+++||+|..
T Consensus 279 ~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 279 KDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCEEEEECCTTTC
T ss_pred CCCCEEEEEECcccC
Confidence 89999999999986
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.60 E-value=4e-09 Score=119.59 Aligned_cols=72 Identities=39% Similarity=0.750 Sum_probs=28.3
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|+++++|||++++.+|.+|+|.+|+||||+||||++++|+++||+++.+
T Consensus 405 ~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~ 476 (691)
T 1dar_A 405 PEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANV 476 (691)
T ss_dssp ----------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTT
T ss_pred CCceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhhCceEEE
Confidence 349999999999999999999999999999999999999999999999999999999999999999988753
No 180
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.60 E-value=2.9e-08 Score=95.25 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=53.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH--HHHHHHHh--cCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL--TVNRQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~--~v~~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
...++|+||||+.+|.......++.+|++|+|+|+...-..+.. .++..+.+ .++|++++.||+|+..
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 46899999999999987777788899999999999875443332 33344444 3789999999999863
No 181
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.60 E-value=9.5e-08 Score=91.48 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCCeEEEeceEEEeccCcccccCcccCCCEEEE--cCC---
Q psy12559 257 GKHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--- 331 (610)
Q Consensus 257 ~~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--- 331 (610)
.++||.+.|..++. ..|++..|||.+|++++||+|.+.+.+...+|++|+. ...++++|.|||.+++ .|+
T Consensus 3 ~~~p~rl~v~~v~~-g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~----~~~~~~~A~aGd~V~l~L~gi~~~ 77 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK-DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILS----DDVETDTVAPGENLKIRLKGIEEE 77 (204)
T ss_dssp ----CBEEEEEEEE-SSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECS----SSSCBSEECTTSEEEEEEEESSSS
T ss_pred CCCCEEEEEEEEEc-CCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEE----CCEEeEEECCCCEEEEEEcCCCHH
Confidence 56899999998876 3499999999999999999999999998899999873 3468999999999997 777
Q ss_pred CcccCceEecCCC
Q psy12559 332 DCASGDTFVTDKN 344 (610)
Q Consensus 332 ~~~~Gdtl~~~~~ 344 (610)
++..||+|+ +++
T Consensus 78 di~rG~vl~-~~~ 89 (204)
T 3e1y_E 78 EILPGFILC-DPN 89 (204)
T ss_dssp CCCTTCEEB-CSS
T ss_pred HCccceEEE-CCC
Confidence 689999999 544
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.59 E-value=3.1e-08 Score=111.84 Aligned_cols=71 Identities=28% Similarity=0.535 Sum_probs=67.8
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEeccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~gmge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..++++|..+.+..++..+|+++.++||++++..|.+|++.+|+||||+||||++++|+ +||+++.+
T Consensus 379 ~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~ 449 (665)
T 2dy1_A 379 PDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEF 449 (665)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HCCceEEE
Confidence 359999999999999999999999999999999999999999999999999999999999999 99999864
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.58 E-value=5.1e-08 Score=107.60 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=56.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC--CCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD--VPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~--ip~i~~iNKiDr~~ 92 (610)
++..++++||||+..|.......++.+|++|+|+|++.+ .+...++..+.+.+ +|+|+|.||+|...
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENP 164 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCccc
Confidence 368999999999999988888888999999999999875 44556667777655 99999999999863
No 184
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.50 E-value=2e-07 Score=93.04 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=65.0
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHH---Hh------hcCEEEEEEecCC-CcchhhHHHHHHHHhc-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERA---LR------VLDGAILVLCAVG-GVQSQTLTVNRQMKRY- 77 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~a---l~------~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~- 77 (610)
..+.|+......+.+++..++|+|||||.+|....... ++ .+|++++|+|... +.......+++.+.+.
T Consensus 67 ~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~ 146 (262)
T 3def_A 67 FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTF 146 (262)
T ss_dssp SCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 35678888888889999999999999999885433222 22 6799999987754 3444455666666543
Q ss_pred C----CCeEEEEecccCC---CCCHHHHHHH
Q psy12559 78 D----VPCIAFINKLDRL---GADPYRVINQ 101 (610)
Q Consensus 78 ~----ip~i~~iNKiDr~---~~~~~~~~~~ 101 (610)
+ .|+++++||+|+. ...+++.+.+
T Consensus 147 ~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 147 GKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp CGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred chhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 2 4899999999985 3445554443
No 185
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.50 E-value=1.3e-07 Score=98.39 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=65.5
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-----------chhhHHHHHHHHh--
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-----------QSQTLTVNRQMKR-- 76 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-----------~~qt~~v~~~~~~-- 76 (610)
|.-|+......+.+++..+.++||+|+..|..-....++.+|++|+|+|.++-- ......+|+.+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 556766666778889999999999999999998888999999999999998731 1233455655544
Q ss_pred --cCCCeEEEEecccCC
Q psy12559 77 --YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 --~~ip~i~~iNKiDr~ 91 (610)
.++|+|+|.||+|+.
T Consensus 257 ~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred cccCCcEEEEEECcCch
Confidence 479999999999974
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.49 E-value=1.6e-07 Score=106.44 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=55.3
Q ss_pred eeEEEecCCCCcC---cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHH-HHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVD---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNR-QMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~d---F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~-~~~~~~ip~i~~iNKiDr~ 91 (610)
..++||||||+.+ +...+...++.+|++|+|+|+..+...++...|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999765 4455667888999999999999998887777775 5566789999999999986
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.46 E-value=1.5e-07 Score=103.81 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=64.7
Q ss_pred eeEEEecCCCCcC-----------cHHHHHHHHhhcCEEEEEEecCC-CcchhhHHHHHHHHhcCCCeEEEEecccCCCC
Q psy12559 26 HNINIIDTPGHVD-----------FTVEVERALRVLDGAILVLCAVG-GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA 93 (610)
Q Consensus 26 ~~inlIDTPGh~d-----------F~~ev~~al~~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~ 93 (610)
..++||||||+.+ |...+...++.+|++|+|+|+.. +...++..+++++...+.|+++|+||+|+...
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 4799999999987 77888889999999999999988 68888999999998889999999999999742
Q ss_pred -CHHHHHHHH
Q psy12559 94 -DPYRVINQM 102 (610)
Q Consensus 94 -~~~~~~~~i 102 (610)
+..+++..+
T Consensus 234 ~el~~~~~~l 243 (550)
T 2qpt_A 234 QQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 233344444
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.46 E-value=1.2e-06 Score=83.61 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=50.3
Q ss_pred eEEEecCCCCcCc----------HHHHHHH---HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 27 NINIIDTPGHVDF----------TVEVERA---LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 27 ~inlIDTPGh~dF----------~~ev~~a---l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.++||||+.++ ...+... .+.+|++++++|+..+.....+.+++.+...++|.+++.||+|..
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 6889999998643 2222222 357899999999999887766677777788899999999999976
No 189
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.46 E-value=6.7e-07 Score=89.56 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=65.3
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcH---HHHHHHHh------hcCEEEEEEecCC-CcchhhHHHHHHHHhc-C
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFT---VEVERALR------VLDGAILVLCAVG-GVQSQTLTVNRQMKRY-D 78 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~---~ev~~al~------~~D~ailVvDa~~-Gv~~qt~~v~~~~~~~-~ 78 (610)
.|.|.......+.+++..++||||||+.+|. .+....++ .+|++|+|+|... ........+++.+.+. +
T Consensus 71 ~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~ 150 (270)
T 1h65_A 71 QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG 150 (270)
T ss_dssp SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhC
Confidence 4566666667788899999999999998875 23333332 5899999988754 4555555666666533 3
Q ss_pred ----CCeEEEEecccCCCC---CHHHHHHHHH
Q psy12559 79 ----VPCIAFINKLDRLGA---DPYRVINQMR 103 (610)
Q Consensus 79 ----ip~i~~iNKiDr~~~---~~~~~~~~i~ 103 (610)
.|+++++||+|.... ++++..+++.
T Consensus 151 ~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~~~ 182 (270)
T 1h65_A 151 KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRS 182 (270)
T ss_dssp GGGGGGEEEEEECCSCCCGGGCCHHHHHHHHH
T ss_pred cccccCEEEEEECcccCCcCCCCHHHHHHHHH
Confidence 689999999998632 4555544333
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.46 E-value=1.2e-07 Score=107.14 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=54.7
Q ss_pred CeeEEEecCCCCcC-------------cHHHHHHHH-hhcCEEEEEEecCCCcchhhH-HHHHHHHhcCCCeEEEEeccc
Q psy12559 25 DHNINIIDTPGHVD-------------FTVEVERAL-RVLDGAILVLCAVGGVQSQTL-TVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 25 ~~~inlIDTPGh~d-------------F~~ev~~al-~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~~~ip~i~~iNKiD 89 (610)
...+.|+||||... +..-+...+ ..+|.+++|+|+..+...+.. .+++++...+.|+|+++||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45799999999654 222233333 468999999999999988887 788999989999999999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
+..
T Consensus 229 lv~ 231 (772)
T 3zvr_A 229 LMD 231 (772)
T ss_dssp SSC
T ss_pred cCC
Confidence 874
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.42 E-value=2e-07 Score=97.22 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=58.3
Q ss_pred hcceeecceeEEEec-CeeEEEecCCCCcC-------------cHHHHHHHHhhc-CEEEEEEecCCCcchhhHH-HHHH
Q psy12559 10 RGITIQSAATYTLWK-DHNINIIDTPGHVD-------------FTVEVERALRVL-DGAILVLCAVGGVQSQTLT-VNRQ 73 (610)
Q Consensus 10 RgiTi~s~~~~~~~~-~~~inlIDTPGh~d-------------F~~ev~~al~~~-D~ailVvDa~~Gv~~qt~~-v~~~ 73 (610)
+|++.....+.+... ...++||||||..+ +...+...++.. |.+++|+|+..++..+... +++.
T Consensus 113 ~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~ 192 (353)
T 2x2e_A 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE 192 (353)
T ss_dssp TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH
T ss_pred CCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH
Confidence 455544444444443 57899999999643 333444555444 5666678888888877764 7888
Q ss_pred HHhcCCCeEEEEecccCCC
Q psy12559 74 MKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 74 ~~~~~ip~i~~iNKiDr~~ 92 (610)
+...+.|+++|+||+|+..
T Consensus 193 ~~~~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 193 VDPQGQRTIGVITKLDLMD 211 (353)
T ss_dssp HCTTCTTEEEEEECGGGSC
T ss_pred hCcCCCceEEEeccccccC
Confidence 8888999999999999874
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.41 E-value=4.8e-07 Score=89.85 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=47.3
Q ss_pred CeeEEEecCCCCcCcHH------HHHHHHhhcCEEEEEEecCCCcchhhHH-H----HHHHHhcCCCeEEEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTV------EVERALRVLDGAILVLCAVGGVQSQTLT-V----NRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~------ev~~al~~~D~ailVvDa~~Gv~~qt~~-v----~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
++.+.||||||..++.. .+..++.. |.+|+|+|+..+....... . +......++|.++++||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 46899999999987643 23345555 8899999998766554422 1 1223456899999999999874
No 193
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.40 E-value=4.9e-07 Score=84.72 Aligned_cols=69 Identities=17% Similarity=0.103 Sum_probs=50.0
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-hh-hHHHHHHHHh--cCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-SQ-TLTVNRQMKR--YDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~q-t~~v~~~~~~--~~ip~i~~iNKiDr~~ 92 (610)
+...++++||||+..|..-....++.+|++++|+|.+++.. -. -..++..+.. .++|++++.||+|+..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 46789999999998887766677888999999999987632 12 2233333332 3789999999999863
No 194
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.37 E-value=3.7e-07 Score=95.23 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=57.7
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCC---------c--chhhHHHHHHHHh--
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG---------V--QSQTLTVNRQMKR-- 76 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~G---------v--~~qt~~v~~~~~~-- 76 (610)
|.-|+......+.+++..+.++||||+..|.......++.++++|+|+|.++- . ......+|+.+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 55565555667888999999999999999988888888999999999999872 1 1223455665543
Q ss_pred --cCCCeEEEEecccCC
Q psy12559 77 --YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 --~~ip~i~~iNKiDr~ 91 (610)
.++|+|+|.||+|+.
T Consensus 265 ~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLL 281 (362)
T ss_dssp GGTTSEEEEEEECHHHH
T ss_pred hhCCCCEEEEEEChhhh
Confidence 478999999999974
No 195
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=8.8e-07 Score=85.19 Aligned_cols=80 Identities=15% Similarity=0.331 Sum_probs=57.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhh----cCEEEEEEecC---CCcchhhHHHHHHHH------hcCCCeEEEEecccC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRV----LDGAILVLCAV---GGVQSQTLTVNRQMK------RYDVPCIAFINKLDR 90 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~----~D~ailVvDa~---~Gv~~qt~~v~~~~~------~~~ip~i~~iNKiDr 90 (610)
....++|+|||||.+|.......++. +|++|+|+|+. +........+.+... ..++|+++++||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 56789999999999998888888877 89999999998 333322232222222 158999999999999
Q ss_pred CCCC-HHHHHHHHH
Q psy12559 91 LGAD-PYRVINQMR 103 (610)
Q Consensus 91 ~~~~-~~~~~~~i~ 103 (610)
.... ..++.+.++
T Consensus 133 ~~~~~~~~~~~~l~ 146 (218)
T 1nrj_B 133 FTARPPSKIKDALE 146 (218)
T ss_dssp TTCCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 8654 244433333
No 196
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.35 E-value=8e-07 Score=92.89 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=44.4
Q ss_pred HhcceeecceeEEEecCe--eEEEecCCCCcCcHHHH-------H-------HHHhhc-------------CEEEEEEec
Q psy12559 9 QRGITIQSAATYTLWKDH--NINIIDTPGHVDFTVEV-------E-------RALRVL-------------DGAILVLCA 59 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~--~inlIDTPGh~dF~~ev-------~-------~al~~~-------------D~ailVvDa 59 (610)
.+++++......+.+++. .++++||||+.|+.... . ..++.+ |+++++|+.
T Consensus 76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 355555555555555554 78999999997664421 1 334333 357778876
Q ss_pred -CCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 60 -VGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 60 -~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+.......+++.+ ..++|+|+|+||+|+..
T Consensus 156 ~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 156 FGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp SSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSC
T ss_pred CCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCC
Confidence 567776666666665 46899999999999863
No 197
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.3e-07 Score=85.49 Aligned_cols=85 Identities=14% Similarity=0.308 Sum_probs=59.8
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhh----cCEEEEEEecCCCcchh--hHHHHHHHHh-------cCCCeEEEEeccc
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRV----LDGAILVLCAVGGVQSQ--TLTVNRQMKR-------YDVPCIAFINKLD 89 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~----~D~ailVvDa~~Gv~~q--t~~v~~~~~~-------~~ip~i~~iNKiD 89 (610)
+.+..++|+||||+.+|.......++. +|++|+|+|+....... ....+..+.. .++|+++++||+|
T Consensus 88 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 167 (193)
T 2ged_A 88 YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE 167 (193)
T ss_dssp CCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred ecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchH
Confidence 367789999999999987666666665 89999999998322221 1222322221 4899999999999
Q ss_pred CCC-CCHHHHHHHHHHHhC
Q psy12559 90 RLG-ADPYRVINQMRQKVG 107 (610)
Q Consensus 90 r~~-~~~~~~~~~i~~~l~ 107 (610)
+.. ...++..+.+++.++
T Consensus 168 l~~~~~~~~~~~~l~~~l~ 186 (193)
T 2ged_A 168 LFTARPPSKIKDALESEIQ 186 (193)
T ss_dssp STTCCCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 985 456677777766553
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.32 E-value=4.1e-07 Score=87.79 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=42.8
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.+..+++|||||..+-.... -...+.+++|+|+..|.. ..|..+...++|.++++||+|+.
T Consensus 105 ~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGH
T ss_pred hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCC
Confidence 4567889999998832110000 013588999999998743 34444455679999999999974
No 199
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=2.4e-06 Score=82.25 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=46.5
Q ss_pred EEEecCe--eEEEecCCCCcCc-HHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 20 YTLWKDH--NINIIDTPGHVDF-TVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~~--~inlIDTPGh~dF-~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
.+.+++. .+.++||+|...+ ..-.....+.+|++|+|+|...--.-+. ..++..+.+ .++|+|++.||+|+.
T Consensus 79 ~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 79 TLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred EEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 3445554 5678999998763 2222223467899999999876322222 233444443 379999999999975
No 200
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.24 E-value=5.3e-06 Score=84.64 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=59.4
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcCcHH---HHHHHHhhcCEEEEEEecCCCcchhhHHHHHH----HH--hcCCCe
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTV---EVERALRVLDGAILVLCAVGGVQSQTLTVNRQ----MK--RYDVPC 81 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~dF~~---ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~----~~--~~~ip~ 81 (610)
+-|+.....++. ...+++++||||+.+|.. .....+|.++++|+|+|+... .......|+. +. ..++|+
T Consensus 32 ~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipi 109 (331)
T 3r7w_B 32 ESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINI 109 (331)
T ss_dssp CCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEE
T ss_pred cCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcE
Confidence 556655555542 347899999999999953 456778999999999999886 3444444432 22 247999
Q ss_pred EEEEecccCCCC
Q psy12559 82 IAFINKLDRLGA 93 (610)
Q Consensus 82 i~~iNKiDr~~~ 93 (610)
+++.||+|+...
T Consensus 110 llvgNK~DL~~~ 121 (331)
T 3r7w_B 110 EVLIHKVDGLSE 121 (331)
T ss_dssp EEECCCCCSSCS
T ss_pred EEEEECcccCch
Confidence 999999998754
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.22 E-value=6e-07 Score=97.35 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=90.4
Q ss_pred EecCeeEEEecCCCCc----CcHHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCCCC
Q psy12559 22 LWKDHNINIIDTPGHV----DFTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGAD 94 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~----dF~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~ 94 (610)
.|+++.++||||||+. ++..++....+ .+|.+++|+||..|.. ....++...+ .+|+ ++++||+|.. ..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~-~~ 255 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGH-AK 255 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSC-CC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccc-cc
Confidence 3578999999999986 35555544433 6799999999999853 2333333333 2785 8999999987 33
Q ss_pred HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEee-cCCCCCceEeecCchhHHHHHHHHHHHHHHHHhcC-
Q psy12559 95 PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEG- 172 (610)
Q Consensus 95 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~- 172 (610)
...++. +...++.... .+..+. .+. |+.......| +...|. .....|+|.+.+.
T Consensus 256 ~g~~l~-~~~~~g~PI~--fig~ge--~~~---dl~~f~~~~~vsal~G~----------------Gdi~~Lie~i~e~~ 311 (504)
T 2j37_W 256 GGGALS-AVAATKSPII--FIGTGE--HID---DFEPFKTQPFISKLLGM----------------GDIEGLIDKVNELK 311 (504)
T ss_dssp CTHHHH-HHHHHCCCEE--EEECSS--STT---CEECCTHHHHHHCCCTT----------------TTTTTTHHHHTTTT
T ss_pred hHHHHH-HHHHhCCCeE--Eecccc--chh---hhhccCcceeeehhcCC----------------CcHHHHHHHHHHHH
Confidence 344444 5566774432 111121 111 1111000011 110110 0034567777655
Q ss_pred ---CHHHHHhhhcCCCCCHHHHHHHHHHhhhcC
Q psy12559 173 ---DEILGEMFLEEKSISEDDIKKAIRRSTLTR 202 (610)
Q Consensus 173 ---dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 202 (610)
+++++++|+++ +++.+++...+++....+
T Consensus 312 ~~~~~~l~~k~~~g-~~~l~d~~~~l~~~~~~G 343 (504)
T 2j37_W 312 LDDNEALIEKLKHG-QFTLRDMYEQFQNIMKMG 343 (504)
T ss_dssp TCCCTTTTTSCTTS-GGGGCCCHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 67899999988 788888888888865554
No 202
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=3.7e-07 Score=96.54 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=24.8
Q ss_pred CeeEEEecCCCCcCcHHH-------HHHHHhhcCEEEEEEecCCC
Q psy12559 25 DHNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVGG 62 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e-------v~~al~~~D~ailVvDa~~G 62 (610)
...++|+||||+.++..+ ....++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 368999999999764322 22456899999999999886
No 203
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.18 E-value=4.3e-06 Score=79.25 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=54.1
Q ss_pred eeEEEecC--eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 18 ATYTLWKD--HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 18 ~~~~~~~~--~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...+.+++ ..+.++||||+..|........+.+|++++|+|.......+.. .+++.+.. .+.|+++++||+|+.
T Consensus 44 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 44 TRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 33455655 4678899999998876667777889999999999876554433 33333332 478899999999975
No 204
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.12 E-value=1.2e-06 Score=96.91 Aligned_cols=70 Identities=27% Similarity=0.509 Sum_probs=62.0
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEe-----ccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~g-----mge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..+.+.|..+.+..++..+|+++..+||++.+.. +|++.++.| ||++||||+.++|+++||+++.+
T Consensus 293 ~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~ 367 (600)
T 2ywe_A 293 AKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--ESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIIT 367 (600)
T ss_dssp CCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--EEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEEeeccccccHHHHHHHHHHHhhhCCEEEEEE--CCccccccceEEEeccHHHHHHHHHHHHhhcCceEEE
Confidence 56899999999998999999999999999999999984 466655555 99999999999999999999863
No 205
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.11 E-value=9e-06 Score=76.68 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=45.3
Q ss_pred EEEecCe--eEEEecCCCCcCc-HHHHHHHHhhcCEEEEEEecCCCcchhh-HHHHHHHHh----cCCCeEEEEecccCC
Q psy12559 20 YTLWKDH--NINIIDTPGHVDF-TVEVERALRVLDGAILVLCAVGGVQSQT-LTVNRQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 20 ~~~~~~~--~inlIDTPGh~dF-~~ev~~al~~~D~ailVvDa~~Gv~~qt-~~v~~~~~~----~~ip~i~~iNKiDr~ 91 (610)
.+.+++. .+.++||+|...+ ..-.....+.+|++++|+|...--..+. ..++..+.+ .++|++++.||+|+.
T Consensus 48 ~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 48 TLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 4455554 5678999997652 1122345678999999999876332222 233333332 479999999999975
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.10 E-value=3.9e-06 Score=86.31 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=66.4
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC---------Cc--chhhHHHHHHHHh-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG---------GV--QSQTLTVNRQMKR- 76 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~---------Gv--~~qt~~v~~~~~~- 76 (610)
.|.-|+......+.+++..+.++||+|+..|..-.....+.++++|+|+|.++ .. ......+|+.+..
T Consensus 144 ~~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 144 NRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp SCCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred cccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 36677777788889999999999999999999999999999999999999972 11 1223445555543
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.++|+|+|.||+|+.
T Consensus 224 ~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp GGGTTSEEEEEEECHHHH
T ss_pred hccCCCeEEEEEECchhh
Confidence 478999999999975
No 207
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.08 E-value=1.1e-05 Score=85.36 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=53.0
Q ss_pred eeecceeEEEecC-eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh-----cCC
Q psy12559 13 TIQSAATYTLWKD-HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----YDV 79 (610)
Q Consensus 13 Ti~s~~~~~~~~~-~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~-----~~i 79 (610)
|+....-.+.+++ ..++++||||+.+ +.....+.+..+|.++.|+|+......+....+++... .+.
T Consensus 191 Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~ 270 (416)
T 1udx_A 191 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRR 270 (416)
T ss_dssp SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcC
Confidence 4444445566665 7899999999864 22344555667999999999972222222333333332 368
Q ss_pred CeEEEEecccCCC
Q psy12559 80 PCIAFINKLDRLG 92 (610)
Q Consensus 80 p~i~~iNKiDr~~ 92 (610)
|.++++||+|...
T Consensus 271 P~ILVlNKlDl~~ 283 (416)
T 1udx_A 271 PSLVALNKVDLLE 283 (416)
T ss_dssp CEEEEEECCTTSC
T ss_pred CEEEEEECCChhh
Confidence 9999999999863
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.06 E-value=5.1e-06 Score=83.65 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=44.7
Q ss_pred ecCCCCc-CcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 31 IDTPGHV-DFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 31 IDTPGh~-dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
=+-|||. ....++...+..+|.++.|+||..+.......+-+.+ .++|+++++||+|+.
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 3579997 5677899999999999999999998776654444443 589999999999986
No 209
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.05 E-value=1.8e-05 Score=84.40 Aligned_cols=151 Identities=19% Similarity=0.241 Sum_probs=87.8
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHH------hhcCEEEEEEecCCCcchhhHHHHHHHHh--cCCCe-EEEEecccCCCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERAL------RVLDGAILVLCAVGGVQSQTLTVNRQMKR--YDVPC-IAFINKLDRLGA 93 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al------~~~D~ailVvDa~~Gv~~qt~~v~~~~~~--~~ip~-i~~iNKiDr~~~ 93 (610)
++++.+.||||||...+...+..++ ...|.+++|+|+..|. .. +++++. .++++ -+++||+|.. .
T Consensus 181 ~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~---~~~~~~f~~~l~i~gvVlnK~D~~-~ 254 (433)
T 2xxa_A 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DA---ANTAKAFNEALPLTGVVLTKVDGD-A 254 (433)
T ss_dssp HTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--TH---HHHHHHHHHHSCCCCEEEECTTSS-S
T ss_pred hCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HH---HHHHHHHhccCCCeEEEEecCCCC-c
Confidence 4688999999999877655544443 3568999999998772 12 333332 24664 4799999985 3
Q ss_pred CHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHH--HHHHHHHH--
Q psy12559 94 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESK--RQELIEHV-- 169 (610)
Q Consensus 94 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~l~e~~-- 169 (610)
... ...++...++.....+ +.+.....+ ..|. |..+...+... ...|+|.+
T Consensus 255 ~~g-~~l~i~~~~~~Pi~~i----G~ge~v~dl--------~~f~------------p~~~a~~l~g~gD~~~Lie~a~~ 309 (433)
T 2xxa_A 255 RGG-AALSIRHITGKPIKFL----GVGEKTEAL--------EPFH------------PDRIASRILGMGDVLSLIEDIES 309 (433)
T ss_dssp CCT-HHHHHHHHHCCCEEEE----ECSSSSSCE--------EECC------------HHHHHHHHHCCCTTHHHHHHHHH
T ss_pred cHH-HHHHHHHHHCCCeEEE----ecCCCchhh--------hhcC------------hHHHHHHHhCccchHHHHHHHHH
Confidence 333 3335666666443221 111111100 0111 12222222111 22233322
Q ss_pred ---hcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcCce
Q psy12559 170 ---AEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKF 204 (610)
Q Consensus 170 ---~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~ 204 (610)
.+.+++++++|+++++++.+++...+++....+.+
T Consensus 310 ~~~~~~~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~ 347 (433)
T 2xxa_A 310 KVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGM 347 (433)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSC
T ss_pred hhhhhhhHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 23357899999988789999999999987766544
No 210
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.05 E-value=2.8e-06 Score=84.21 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=29.2
Q ss_pred hcCEEEEEEecCCC--cchhh-HHHHHHH----HhcCCCeEEEEecccCC
Q psy12559 49 VLDGAILVLCAVGG--VQSQT-LTVNRQM----KRYDVPCIAFINKLDRL 91 (610)
Q Consensus 49 ~~D~ailVvDa~~G--v~~qt-~~v~~~~----~~~~ip~i~~iNKiDr~ 91 (610)
.+|++|+|+|+... -..+. ..++..+ ...++|++++.||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 58999999999875 22222 2223333 23589999999999975
No 211
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.03 E-value=5.6e-06 Score=86.01 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=39.4
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+.++.+.|+||||..+-. ......+|.+++|+|+..|...|... . .-..+|.++++||+|+.
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 467899999999964332 22357899999999998875433221 1 12467999999999986
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.00 E-value=6.6e-05 Score=79.69 Aligned_cols=150 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred ecCeeEEEecCCCCcC------cHHHHHHHHhh--cCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC
Q psy12559 23 WKDHNINIIDTPGHVD------FTVEVERALRV--LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD 94 (610)
Q Consensus 23 ~~~~~inlIDTPGh~d------F~~ev~~al~~--~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~ 94 (610)
+.++.+.||||||... +..|+....+. .|.+++|+|+..|-. ...+.+...+.--+..+++||+|.. +.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~-a~ 253 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT-AK 253 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC-SC
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc-cc
Confidence 4578999999999755 56666554444 399999999998632 2233343333335568999999986 45
Q ss_pred HHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceE--eecCchhHHHH------HHHHHHHHH
Q psy12559 95 PYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLR--IEEIPADLKKE------AESKRQELI 166 (610)
Q Consensus 95 ~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~------~~~~~~~l~ 166 (610)
...++.. ....+..... ++. |+.+. ....|+.+... +...++++.
T Consensus 254 ~G~als~-~~~~g~Pi~f----ig~----------------------Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~ 306 (433)
T 3kl4_A 254 GGGALSA-VVATGATIKF----IGT----------------------GEKIDELETFNAKRFVSRILGMGDIESILEKVK 306 (433)
T ss_dssp HHHHHHH-HHHHTCEEEE----EEC----------------------CSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHH
T ss_pred chHHHHH-HHHHCCCEEE----EEC----------------------CCChHhCccCCHHHHHHHhcCCchHHHHHHHHH
Confidence 5554443 3344432211 111 22211 11234556553 445666666
Q ss_pred HHHhcCC-HHHHHhhhcCC-CCCHHHHHHHHHHhhhcC
Q psy12559 167 EHVAEGD-EILGEMFLEEK-SISEDDIKKAIRRSTLTR 202 (610)
Q Consensus 167 e~~~~~d-d~l~e~~l~~~-~~~~~~l~~~l~~~~~~~ 202 (610)
+.+.+.+ ++++++|.+|+ .++.+++...+++...++
T Consensus 307 ~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~kmg 344 (433)
T 3kl4_A 307 GLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMG 344 (433)
T ss_dssp HC-------------------CCHHHHHHHHHHHHHCC
T ss_pred HhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 6665554 67999999997 899999998888766655
No 213
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.99 E-value=1.1e-05 Score=84.90 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=64.5
Q ss_pred HhcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC----------Ccc-hhhHHHHHHHHh-
Q psy12559 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----------GVQ-SQTLTVNRQMKR- 76 (610)
Q Consensus 9 eRgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~----------Gv~-~qt~~v~~~~~~- 76 (610)
.|..|+......|.+++..+.++||+|+..|..-....++.++++|+|+|.++ --. .....+|+.+..
T Consensus 200 ~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 200 CRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred cccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 45556655666788889999999999999999988889999999999999986 111 123445555543
Q ss_pred ---cCCCeEEEEecccCC
Q psy12559 77 ---YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 ---~~ip~i~~iNKiDr~ 91 (610)
.++|+|+|.||+|+.
T Consensus 280 ~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TTCSSCCEEEEEECHHHH
T ss_pred ccCCCCeEEEEEEChhhh
Confidence 368999999999963
No 214
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.96 E-value=1.1e-05 Score=82.60 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecC-------CCcc----hhhHHHHHHHHh--
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV-------GGVQ----SQTLTVNRQMKR-- 76 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~-------~Gv~----~qt~~v~~~~~~-- 76 (610)
|.-|+.....++.+++..+.++||.|+..|..-.....+.++++|+|+|.+ +.-. .....+|+.+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 666777777888899999999999999999888888889999999999765 2111 123455555543
Q ss_pred --cCCCeEEEEecccCC
Q psy12559 77 --YDVPCIAFINKLDRL 91 (610)
Q Consensus 77 --~~ip~i~~iNKiDr~ 91 (610)
.++|+|+|.||+|+.
T Consensus 231 ~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLL 247 (327)
T ss_dssp GGTTCEEEEEEECHHHH
T ss_pred ccCCceEEEEEECchhh
Confidence 478999999999974
No 215
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.95 E-value=1.6e-05 Score=82.89 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=58.4
Q ss_pred eeecceeEEEe---cCeeEEEecCCCCcCc-------------HHHHHHHHhhcCEEEEEEecCC-Cc-chhhHHHHHHH
Q psy12559 13 TIQSAATYTLW---KDHNINIIDTPGHVDF-------------TVEVERALRVLDGAILVLCAVG-GV-QSQTLTVNRQM 74 (610)
Q Consensus 13 Ti~s~~~~~~~---~~~~inlIDTPGh~dF-------------~~ev~~al~~~D~ailVvDa~~-Gv-~~qt~~v~~~~ 74 (610)
.+....+.+.. ....++||||||..++ ...+...++.+|++|+|+|+.. .. ..+...+++++
T Consensus 120 ~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~ 199 (360)
T 3t34_A 120 AISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV 199 (360)
T ss_dssp CCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS
T ss_pred CcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh
Confidence 33344444443 3568999999999887 5567788899999999998753 32 23335566777
Q ss_pred HhcCCCeEEEEecccCCC
Q psy12559 75 KRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 75 ~~~~ip~i~~iNKiDr~~ 92 (610)
...+.|+|+++||+|+..
T Consensus 200 ~~~~~~~i~V~nK~Dl~~ 217 (360)
T 3t34_A 200 DPSGDRTFGVLTKIDLMD 217 (360)
T ss_dssp CTTCTTEEEEEECGGGCC
T ss_pred cccCCCEEEEEeCCccCC
Confidence 777899999999999874
No 216
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.95 E-value=3.8e-06 Score=93.07 Aligned_cols=70 Identities=31% Similarity=0.568 Sum_probs=61.5
Q ss_pred cCcceeeeeecccccchhhHHHHhchhccccceEeEEEeCCCCceEEEe-----ccHHHHHHHHHHHHhHcCCeeEC
Q psy12559 539 HDPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSG-----MGELHLEIYAQRMEREYNCPVVL 610 (610)
Q Consensus 539 ~~~~~~~~v~a~~~~~~~e~~~~l~~l~~edp~~~v~~d~~t~~~~I~g-----mge~~lei~~~~l~~~~~~~~~~ 610 (610)
..|+..+.+.|....+..++..+|+++..+||++.+. .++++.++.| ||++||||+.++|+++||+++.+
T Consensus 291 ~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~ 365 (599)
T 3cb4_D 291 VKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLIT 365 (599)
T ss_dssp CCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCcceEEEEEecCccCHHHHHHHHHHHHhhCcEEEEE--eccccccccceEEEeccHHHHHHHHHHHHHHcCceEEE
Confidence 5688899999988888999999999999999999987 4567655666 99999999999999999999863
No 217
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.92 E-value=9.4e-06 Score=82.54 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=50.9
Q ss_pred eeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-h-hhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 26 HNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-S-QTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 26 ~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-~-qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
..+.++|| +..|..-....++.+|++|+|+|+..... . .-..++..++..++|+++++||+|+.
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 37899999 88888777778899999999999987542 2 22444556666799999999999986
No 218
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.88 E-value=8.6e-06 Score=76.72 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=52.7
Q ss_pred eeEEEecCe--eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhH-HHHHHHHh---cCCCeEEEEecccCC
Q psy12559 18 ATYTLWKDH--NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL-TVNRQMKR---YDVPCIAFINKLDRL 91 (610)
Q Consensus 18 ~~~~~~~~~--~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~-~v~~~~~~---~~ip~i~~iNKiDr~ 91 (610)
...+.+++. .+.++||||+..|...+...++.+|++++|+|.......+.. .+++.+.+ .+.|+++++||+|+.
T Consensus 68 ~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 68 TRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 345556664 456799999998877777778889999999998865433322 23333332 468899999999975
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.86 E-value=2.1e-05 Score=81.54 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=58.4
Q ss_pred HhcceeecceeEEEe------cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC---------Cc--chhhHHHH
Q psy12559 9 QRGITIQSAATYTLW------KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG---------GV--QSQTLTVN 71 (610)
Q Consensus 9 eRgiTi~s~~~~~~~------~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~---------Gv--~~qt~~v~ 71 (610)
.|..|+......|.. +...+.++||+|+..|..-.....+.+|++|+|+|.++ .. -.....+|
T Consensus 160 ~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~ 239 (354)
T 2xtz_A 160 ARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELF 239 (354)
T ss_dssp CCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHH
T ss_pred ecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHH
Confidence 344454444455555 45789999999999999888888999999999999871 11 12234455
Q ss_pred HHHHh----cCCCeEEEEecccCC
Q psy12559 72 RQMKR----YDVPCIAFINKLDRL 91 (610)
Q Consensus 72 ~~~~~----~~ip~i~~iNKiDr~ 91 (610)
+.+.. .++|+|+|.||+|+.
T Consensus 240 ~~i~~~~~~~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 240 DWVLKQPCFEKTSFMLFLNKFDIF 263 (354)
T ss_dssp HHHHTCGGGSSCEEEEEEECHHHH
T ss_pred HHHHhccccCCCeEEEEEECcchh
Confidence 55543 478999999999964
No 220
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00033 Score=72.98 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=62.2
Q ss_pred hcceeecceeEEEecCeeEEEecCCCCcCc-------HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh-----c
Q psy12559 10 RGITIQSAATYTLWKDHNINIIDTPGHVDF-------TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-----Y 77 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~~~inlIDTPGh~dF-------~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~-----~ 77 (610)
-+.|++...-.+.+.+.+|.|+||||..+- ...+...++.+|..++|||+.+.+. +-+.+...+.. .
T Consensus 103 pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~ 181 (376)
T 4a9a_A 103 EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLN 181 (376)
T ss_dssp CSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEET
T ss_pred CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhc
Confidence 367888888888999999999999998653 3457788899999999999987543 22333333333 3
Q ss_pred CCCeEEEEecccCCC
Q psy12559 78 DVPCIAFINKLDRLG 92 (610)
Q Consensus 78 ~ip~i~~iNKiDr~~ 92 (610)
+.|.++++||+|+.+
T Consensus 182 ~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 182 KTPPDILIKKKEKGG 196 (376)
T ss_dssp CCCCCEEEEECSSSC
T ss_pred cCChhhhhhHhhhhh
Confidence 568899999999853
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.72 E-value=0.00012 Score=76.42 Aligned_cols=63 Identities=17% Similarity=0.034 Sum_probs=41.8
Q ss_pred eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 27 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 27 ~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
.+.-+|+| +.+|........+.+|.+++|+|+.+.....-..+-+.+ .+.|+++++||+|+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLP 112 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSC
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCC
Confidence 45555665 778888887777899999999999986644434444433 2789999999999874
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=2.3e-05 Score=77.98 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCCcCcH-HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 34 PGHVDFT-VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 34 PGh~dF~-~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|||.... .++...+..+|.++.|+||..+.......+- .+ ++|+++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCC
Confidence 8997654 5889999999999999999988766543221 22 89999999999986
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.54 E-value=0.00013 Score=74.01 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=41.7
Q ss_pred CcCcHHHHHHHHhhcCEEEEEEecCCCc-chh-hHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 36 HVDFTVEVERALRVLDGAILVLCAVGGV-QSQ-TLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 36 h~dF~~ev~~al~~~D~ailVvDa~~Gv-~~q-t~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
|..|..-....++.+|++++|+|+.+.. ..+ ...++..+...++|+++++||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4445444445688999999999998754 333 2455566777899999999999986
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.45 E-value=0.0003 Score=73.41 Aligned_cols=55 Identities=13% Similarity=-0.057 Sum_probs=38.4
Q ss_pred CcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 36 HVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 36 h~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+|........+.+|.+++|+|+.+-....-..+-+.+ .++|+++++||+|+..
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIP 110 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCC
Confidence 456877777777888999999999873211112222221 3799999999999863
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.44 E-value=3.1e-05 Score=82.58 Aligned_cols=157 Identities=22% Similarity=0.245 Sum_probs=81.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH----h--hcCEEEEEEecCCCcchhhHHHHHHHHh--cCC-C-eEEEEecccCCCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL----R--VLDGAILVLCAVGGVQSQTLTVNRQMKR--YDV-P-CIAFINKLDRLGA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al----~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~--~~i-p-~i~~iNKiDr~~~ 93 (610)
+++.+.||||||......+....+ + .+|.+++|+||..|. . .+.+++. .++ | ..+++||+|.. .
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~---~~~~~~~~~~~~~~i~gvVlnK~D~~-~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q---AGIQAKAFKEAVGEIGSIIVTKLDGS-A 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G---HHHHHHHHHTTSCSCEEEEEECSSSC-S
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H---HHHHHHHHhhcccCCeEEEEeCCCCc-c
Confidence 678999999999876544433332 1 479999999998874 2 2333333 347 7 67999999985 3
Q ss_pred CHHHHHHHHHHHhCCCeeEeeccccCCCCeeEEEEcccceeEeecCCCCCceEeecCchhHHHHHHHH--HHHHHHH---
Q psy12559 94 DPYRVINQMRQKVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESK--RQELIEH--- 168 (610)
Q Consensus 94 ~~~~~~~~i~~~l~~~~~~~~~p~~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~l~e~--- 168 (610)
....++ ++...++..... ++.+..+. |+.. |. |..+....... ...|+|.
T Consensus 253 ~~g~~l-~~~~~~~~pi~~----ig~Ge~~~---dl~~-----f~------------~~~~~s~l~g~gdi~~L~e~~~~ 307 (432)
T 2v3c_C 253 KGGGAL-SAVAETKAPIKF----IGIGEGID---DLEP-----FD------------PKKFISRLLGMGDLESLLEKAED 307 (432)
T ss_dssp TTHHHH-HHHHHSSCCEEE----ECCSSSSS---SCCB-----CC------------HHHHHHHHTCSSCSSTTSSTTTS
T ss_pred chHHHH-HHHHHHCCCEEE----eecCcccc---cccc-----CC------------HHHHHHHHcCCCcHHHHHHHHHH
Confidence 334444 366777654332 22222211 1110 00 00011100000 0122222
Q ss_pred -HhcCCHHHHHhhhcCCCCCHHHHHHHHHHhhhcC---ceeEEEeccc
Q psy12559 169 -VAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTR---KFTPVLVGTA 212 (610)
Q Consensus 169 -~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~---~~~Pv~~~Sa 212 (610)
+.+.+++++++|+.+ +++.+++...++....++ .+++.++|++
T Consensus 308 ~~~e~~~~~~~k~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~ 354 (432)
T 2v3c_C 308 MVDEKTEESIDAIMRG-KFTLNELMTQLEAIENMGSMKKILSMIPGFG 354 (432)
T ss_dssp CSCSSSSTTHHHHCCS-CCHHHHHHHHTTTTSCC--------------
T ss_pred HHHhhhHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHccccc
Confidence 233345688999887 788899888877655555 5566666643
No 226
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.39 E-value=0.00017 Score=74.40 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=40.3
Q ss_pred EecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 22 LWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 22 ~~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.+.++.+.||||||..+=.. .....+|.+++|+|+..|-..|. +.+.+ ..+|.++++||+|+.
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 34689999999999765322 23468999999999876532221 10001 135778999999964
No 227
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.37 E-value=0.0011 Score=56.03 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=55.8
Q ss_pred CCCeEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecCCC-eEEEeceEEEeccCcccccCcccCCCEEEE--cCC--C
Q psy12559 258 KHPFIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTD-KKVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV--D 332 (610)
Q Consensus 258 ~~p~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~-~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~ 332 (610)
..|....+.++...=+|.+..|||.+|+|++|+.| +.+ ...+|.+|. .+.+++++|.+||-|++ .|. +
T Consensus 32 ~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE----~~~e~v~eA~~GdnVai~Ikg~~~~ 104 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIE----RNREKVEFAIAGDRIGISIEGKIGK 104 (116)
T ss_dssp SCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEE----ETTEEESEEETTCEEEEEEESCCCC
T ss_pred cCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEE----ECCcCcCCcCCCCEEEEEEECCccc
Confidence 34555444443333347888999999999999999 444 466777777 35678999999999985 554 5
Q ss_pred cccCceEe
Q psy12559 333 CASGDTFV 340 (610)
Q Consensus 333 ~~~Gdtl~ 340 (610)
++.||+|.
T Consensus 105 I~~GdVLy 112 (116)
T 1xe1_A 105 VKKGDVLE 112 (116)
T ss_dssp CCTTCEEE
T ss_pred cCCCcEEE
Confidence 78888887
No 228
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.23 E-value=0.0011 Score=62.63 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=34.4
Q ss_pred CCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHH----HHHHh----cCCCeEEEEecc-cCCC
Q psy12559 35 GHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN----RQMKR----YDVPCIAFINKL-DRLG 92 (610)
Q Consensus 35 Gh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~----~~~~~----~~ip~i~~iNKi-Dr~~ 92 (610)
|+..+..-.......+|+.|+|||+.+---...+.-+ +.+.. .++|.+||.||. |..+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 3444444467788899999999999864221232222 22221 478999999996 6654
No 229
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.10 E-value=0.0047 Score=63.93 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=39.8
Q ss_pred cceeecceeEEEecC-----------------eeEEEecCCCCcCcHHH-------HHHHHhhcCEEEEEEecCC
Q psy12559 11 GITIQSAATYTLWKD-----------------HNINIIDTPGHVDFTVE-------VERALRVLDGAILVLCAVG 61 (610)
Q Consensus 11 giTi~s~~~~~~~~~-----------------~~inlIDTPGh~dF~~e-------v~~al~~~D~ailVvDa~~ 61 (610)
+.|+......+.+.+ ..++|+||||...+..+ ....++.+|++++|+|+.+
T Consensus 34 ~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 34 FCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 457766665666655 57999999999988643 4566899999999999986
No 230
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.94 E-value=0.0016 Score=61.38 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=61.5
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc-----CCCeEEEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY-----DVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~-----~ip~i~~iNKiDr~~~~~~~~ 98 (610)
+.|.+.+||||+.. ...+..++..+|.+|+++.....- ..+..+++.+.+. +++..+++||+|.......+.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~~~~ 150 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATMLNVL 150 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEEHHH
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHHHHH
Confidence 35889999999987 456788899999999999988776 7788888887754 467789999999654334444
Q ss_pred HHHHHHHhCCC
Q psy12559 99 INQMRQKVGHN 109 (610)
Q Consensus 99 ~~~i~~~l~~~ 109 (610)
.+.+++ ++..
T Consensus 151 ~~~l~~-~~~~ 160 (206)
T 4dzz_A 151 KESIKD-TGVK 160 (206)
T ss_dssp HHHHHH-HTCC
T ss_pred HHHHHH-cCCc
Confidence 444444 5643
No 231
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.86 E-value=0.0021 Score=63.45 Aligned_cols=89 Identities=9% Similarity=-0.057 Sum_probs=63.3
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC------CCCH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL------GADP 95 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~------~~~~ 95 (610)
|+.|.+.|||||+..........++..+|.+|+|+.....-...+...++.+++.++|.+ +++|+.|.. ....
T Consensus 126 ~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 205 (262)
T 2ph1_A 126 WGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYI 205 (262)
T ss_dssp CCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECT
T ss_pred ccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCccccccccc
Confidence 467899999999976643333344557899999999887666677888888888899988 999998841 1000
Q ss_pred --HHHHHHHHHHhCCCee
Q psy12559 96 --YRVINQMRQKVGHNAA 111 (610)
Q Consensus 96 --~~~~~~i~~~l~~~~~ 111 (610)
...++.+.+.++....
T Consensus 206 ~~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 206 FGEGKGESLAKKYNIGFF 223 (262)
T ss_dssp TCCCCHHHHHHHTTCSEE
T ss_pred ccccHHHHHHHHcCCCeE
Confidence 1235666777775533
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.84 E-value=0.03 Score=59.35 Aligned_cols=81 Identities=21% Similarity=0.133 Sum_probs=47.5
Q ss_pred cCeeEEEecCCCCcCcH----HHHHH--HHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDFT----VEVER--ALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~----~ev~~--al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~ 97 (610)
+++.+.||||||..... .|+.. .....|.+++|+||..|-. .....+...+.--+..+++||+|... ...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~~~~i~gVIlTKlD~~~-~gG- 256 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKEATPIGSIIVTKLDGSA-KGG- 256 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHSCTTEEEEEECCSSCS-SHH-
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHhhCCCeEEEEECCCCcc-ccc-
Confidence 45899999999965433 33222 2224699999999998632 22233333332233469999999752 222
Q ss_pred HHHHHHHHhCC
Q psy12559 98 VINQMRQKVGH 108 (610)
Q Consensus 98 ~~~~i~~~l~~ 108 (610)
...++....+.
T Consensus 257 ~~ls~~~~~g~ 267 (443)
T 3dm5_A 257 GALSAVAATGA 267 (443)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHCC
Confidence 33344444554
No 233
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.73 E-value=0.0023 Score=60.97 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=62.4
Q ss_pred cCeeEEEecCCCC-cCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh-cCCCeEEEEecccCCC-CCHHHHHH
Q psy12559 24 KDHNINIIDTPGH-VDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDRLG-ADPYRVIN 100 (610)
Q Consensus 24 ~~~~inlIDTPGh-~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~-~~ip~i~~iNKiDr~~-~~~~~~~~ 100 (610)
+.+.+.+||||+. .+. .+..++..+|.+|+++.....-...+...++.+.+ .+.+..+++|++|... ....++.+
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~ 143 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQ 143 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTTSCHHHHHHH
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCccchHHHHHHH
Confidence 5688999999997 544 46678899999999999876555667777777776 3788889999999765 44455666
Q ss_pred HHHHHhCCC
Q psy12559 101 QMRQKVGHN 109 (610)
Q Consensus 101 ~i~~~l~~~ 109 (610)
.+++ ++..
T Consensus 144 ~l~~-~g~~ 151 (209)
T 3cwq_A 144 LLTT-AGLP 151 (209)
T ss_dssp HHHH-TTCC
T ss_pred HHHH-cCCc
Confidence 6655 6643
No 234
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.0061 Score=60.52 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=38.6
Q ss_pred CCcCcHHHHHHHHhhcCEEEEEEecCCCc--chhhH-----HHHHHHH-hcCCCeEEEEec-ccCCCC
Q psy12559 35 GHVDFTVEVERALRVLDGAILVLCAVGGV--QSQTL-----TVNRQMK-RYDVPCIAFINK-LDRLGA 93 (610)
Q Consensus 35 Gh~dF~~ev~~al~~~D~ailVvDa~~Gv--~~qt~-----~v~~~~~-~~~ip~i~~iNK-iDr~~~ 93 (610)
|+..+..-.......+|+.|+|||+++-- ....+ .++.... ..+.|.+||.|| -|..++
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 45556666788888999999999998643 22221 1122222 258999999997 577643
No 235
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.62 E-value=0.0018 Score=62.02 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=35.8
Q ss_pred CeeEEEecCCCCcCcHHHHHHHH-hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERAL-RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al-~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
+..+.++||+|...-. ..+ ...+..+.|+|+..+...+... ....+.|.++++||+|+.
T Consensus 118 ~~d~~~id~~g~i~~~----~s~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP----ADFDLGTHKRIVVISTTEGDDTIEKH----PGIMKTADLIVINKIDLA 177 (226)
T ss_dssp GCSEEEEECCSCSSGG----GGCCCSCSEEEEEEEGGGCTTTTTTC----HHHHTTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCccCc----chhhhccCcEEEEEecCcchhhHhhh----hhHhhcCCEEEEeccccC
Confidence 3478899999942210 011 2345667888876554333211 222478999999999974
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.60 E-value=0.0037 Score=63.07 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=52.5
Q ss_pred ecCeeEEEecCCCCcC--cHHHHH------HHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC-eEEEEecccCCCC
Q psy12559 23 WKDHNINIIDTPGHVD--FTVEVE------RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGA 93 (610)
Q Consensus 23 ~~~~~inlIDTPGh~d--F~~ev~------~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip-~i~~iNKiDr~~~ 93 (610)
++++.+.||||||... ...... .++..+|.+++|+|+..| .++....+...+ ++| ..+++||+|.. .
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~-~ 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT-A 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC-T
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC-c
Confidence 4678999999999877 433322 345578999999999865 233333333332 578 56899999975 3
Q ss_pred CHHHHHHHHHHHhCCC
Q psy12559 94 DPYRVINQMRQKVGHN 109 (610)
Q Consensus 94 ~~~~~~~~i~~~l~~~ 109 (610)
.... ..++...++..
T Consensus 254 ~~g~-~~~~~~~~~~p 268 (297)
T 1j8m_F 254 KGGG-ALSAVAATGAT 268 (297)
T ss_dssp THHH-HHHHHHTTTCC
T ss_pred chHH-HHHHHHHHCcC
Confidence 3333 33455555543
No 237
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.54 E-value=0.028 Score=58.28 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=31.7
Q ss_pred cCeeEEEecCCCCcCcH-------HHHHHHHhhcCEEEEEEecCC
Q psy12559 24 KDHNINIIDTPGHVDFT-------VEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~-------~ev~~al~~~D~ailVvDa~~ 61 (610)
.+..++|+||||...+. ......++.+|++++|+|+.+
T Consensus 67 ~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 67 VPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp ECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 35689999999998752 456678899999999999986
No 238
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.0039 Score=65.90 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=39.3
Q ss_pred eEEEecCCCCcCcHH------HH--------HHHH-----------hh--cCEEEEEEecC-CCcchhhHHHHHHHHhcC
Q psy12559 27 NINIIDTPGHVDFTV------EV--------ERAL-----------RV--LDGAILVLCAV-GGVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 27 ~inlIDTPGh~dF~~------ev--------~~al-----------~~--~D~ailVvDa~-~Gv~~qt~~v~~~~~~~~ 78 (610)
.++++||||..++.. .+ ...+ +. +|.+|++++.. .|..+....+++.+.. +
T Consensus 89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~ 167 (418)
T 2qag_C 89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 167 (418)
T ss_dssp EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-T
T ss_pred ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-c
Confidence 689999999877632 11 1111 11 33456666665 6888888777777764 8
Q ss_pred CCeEEEEecccCC
Q psy12559 79 VPCIAFINKLDRL 91 (610)
Q Consensus 79 ip~i~~iNKiDr~ 91 (610)
+|+|+|+||+|..
T Consensus 168 v~iIlVinK~Dll 180 (418)
T 2qag_C 168 VNIIPLIAKADTL 180 (418)
T ss_dssp SEEEEEEESTTSS
T ss_pred CcEEEEEEcccCc
Confidence 9999999999986
No 239
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.48 E-value=0.006 Score=59.93 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=59.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh------cCCCeE-EEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~------~~ip~i-~~iNKiDr~~~~~~ 96 (610)
..|.+.+||||+..+. .+..++..+|.+|+++.....-...+..+++.+.+ .+++++ +++|+.|.......
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~ 187 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ 187 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH
Confidence 5788999999997654 35678889999999999865433334444444332 257765 89999987544445
Q ss_pred HHHHHHHHHhCCC
Q psy12559 97 RVINQMRQKVGHN 109 (610)
Q Consensus 97 ~~~~~i~~~l~~~ 109 (610)
+..+.+++.++..
T Consensus 188 ~~~~~l~~~~~~~ 200 (257)
T 1wcv_1 188 QVEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHcccc
Confidence 6778888877754
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.40 E-value=0.0016 Score=65.92 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHhhcCEEEEEEecCCCcchhh--HHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 45 RALRVLDGAILVLCAVGGVQSQT--LTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 45 ~al~~~D~ailVvDa~~Gv~~qt--~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
.++..+|.+++|+|+..+..... .+.+..+...++|+++++||+|+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE 131 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCc
Confidence 46788999999999997765544 3344455678999999999999874
No 241
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.40 E-value=0.0061 Score=59.90 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=62.6
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~~~~~i 102 (610)
++|.+.+||||+... ..+..++..+|.+|+|+.....-...+...++.+.+.+++.+ +++|++|.... ...++++
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~--~~~~~~~ 184 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI--EMAKNEI 184 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH--HHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc--cchHHHH
Confidence 468899999998765 667888999999999998766555567777888877777765 89999996532 2556777
Q ss_pred HHHhCCC
Q psy12559 103 RQKVGHN 109 (610)
Q Consensus 103 ~~~l~~~ 109 (610)
.+.++..
T Consensus 185 ~~~~~~~ 191 (263)
T 1hyq_A 185 EAILEAK 191 (263)
T ss_dssp HHHTTSC
T ss_pred HHHhCCC
Confidence 7777754
No 242
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.40 E-value=0.0064 Score=58.63 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=61.2
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~~~~~i 102 (610)
+.|.+.+||||+... ..+..++..+|.+|+|++....-...+...++.+.+.+++.+ +++||.|..... ..++++
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~ 185 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAA 185 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccch--hHHHHH
Confidence 357899999998765 567888999999999998876555566777888877787765 899999975432 334556
Q ss_pred HHHhCCC
Q psy12559 103 RQKVGHN 109 (610)
Q Consensus 103 ~~~l~~~ 109 (610)
.+.++..
T Consensus 186 ~~~~~~~ 192 (237)
T 1g3q_A 186 EDVMEVP 192 (237)
T ss_dssp HHHHCSC
T ss_pred HHHhCcc
Confidence 6666654
No 243
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.23 E-value=0.011 Score=48.43 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.4
Q ss_pred EEEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCeE---EEeceEEEeccCcccccCcccCCCEEEEc--CC-CcccC
Q psy12559 264 LAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV-DCASG 336 (610)
Q Consensus 264 ~V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--gl-~~~~G 336 (610)
-|-.++..++ |.+|-++|.+|+++.+..+.+.+.+.. -++.+|. +....++++.+|.=|+|. +. +.+.|
T Consensus 10 eVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~l~~~~dik~G 85 (99)
T 1d1n_A 10 EVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLK----RYKDDVREVAQGYECGLTIKNFNDIKEG 85 (99)
T ss_dssp EECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEE----CSSSCCSCCBTTCEEEEECTTCSSCSSC
T ss_pred EEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhc----ccccccceECCCcEEEEEEcCcCCCCCC
Confidence 3444455566 999999999999999999999988743 4677777 446679999999999873 45 88999
Q ss_pred ceEe
Q psy12559 337 DTFV 340 (610)
Q Consensus 337 dtl~ 340 (610)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9885
No 244
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.22 E-value=0.0075 Score=60.92 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=39.9
Q ss_pred eeEEEecCCCCc-------CcHHHHH-------HHHhhcC-------------EEEEEEecC-CCcchhhHHHHHHHHhc
Q psy12559 26 HNINIIDTPGHV-------DFTVEVE-------RALRVLD-------------GAILVLCAV-GGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 26 ~~inlIDTPGh~-------dF~~ev~-------~al~~~D-------------~ailVvDa~-~Gv~~qt~~v~~~~~~~ 77 (610)
..++++||||.. .|..-+. ..++.+. .++++++.. .|.......+++.+. .
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-N 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-T
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-h
Confidence 578999999983 3322222 3333332 355555544 468887776666654 4
Q ss_pred CCCeEEEEecccCC
Q psy12559 78 DVPCIAFINKLDRL 91 (610)
Q Consensus 78 ~ip~i~~iNKiDr~ 91 (610)
++|+++++||.|..
T Consensus 155 ~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 155 KVNIVPVIAKADTL 168 (301)
T ss_dssp TSCEEEEECCGGGS
T ss_pred cCCEEEEEEeCCCC
Confidence 68999999999986
No 245
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.12 E-value=0.0058 Score=59.32 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=63.9
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCCCCHHHHHHH
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPYRVINQ 101 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~~~~~~~~ 101 (610)
.+.|.+.+||||+..+. .+..++..+|.+|+|++....-...+..+.+.+.+.+++. .+++||.+. ....+.
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~-----~~~~~~ 201 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN-----IKEEKL 201 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC-----HHHHHH
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC-----hhHHHH
Confidence 45788999999987654 5677889999999999986544455666777777888775 599999983 345677
Q ss_pred HHHHhCCCeeEeecc
Q psy12559 102 MRQKVGHNAAFLQIP 116 (610)
Q Consensus 102 i~~~l~~~~~~~~~p 116 (610)
+++.++..+....+|
T Consensus 202 ~~~~~~~~~~~~~Ip 216 (254)
T 3kjh_A 202 IKKHLPEDKILGIIP 216 (254)
T ss_dssp HHHHSCGGGEEEEEE
T ss_pred HHHHhcCCccccccc
Confidence 888887444444444
No 246
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.88 E-value=0.013 Score=58.63 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=60.7
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh------cCCCeE-EEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR------YDVPCI-AFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~------~~ip~i-~~iNKiDr~~~~~~ 96 (610)
+.|.+.|||||+..+. .+..++..+|.+|+++.+...-...+..+++.+.+ .+++++ +++|+.|.......
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~ 230 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK 230 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence 4578999999997654 35667888999999999876555555555555544 367765 89999997643345
Q ss_pred HHHHHHHHHhCC
Q psy12559 97 RVINQMRQKVGH 108 (610)
Q Consensus 97 ~~~~~i~~~l~~ 108 (610)
+.++++.+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (298)
T 2oze_A 231 SNLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 677888888874
No 247
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.65 E-value=0.0012 Score=68.81 Aligned_cols=83 Identities=8% Similarity=0.054 Sum_probs=55.8
Q ss_pred eEEEecCCCCcCcH-------HHHHHH---HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCH
Q psy12559 27 NINIIDTPGHVDFT-------VEVERA---LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADP 95 (610)
Q Consensus 27 ~inlIDTPGh~dF~-------~ev~~a---l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~ 95 (610)
.+.++||||..+.. .+.... ....+..++++|+...+.......+.++...++|+++++||+|... ...
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 38999999976532 222222 2456889999998533222222224445566889999999999984 446
Q ss_pred HHHHHHHHHHhCCC
Q psy12559 96 YRVINQMRQKVGHN 109 (610)
Q Consensus 96 ~~~~~~i~~~l~~~ 109 (610)
+...+.+++.+|..
T Consensus 292 ~~~~~~~~~~~g~~ 305 (368)
T 3h2y_A 292 EKADELYKNHAGDL 305 (368)
T ss_dssp HHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHhCCc
Confidence 77888888888853
No 248
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.44 E-value=0.068 Score=50.79 Aligned_cols=94 Identities=10% Similarity=0.058 Sum_probs=62.6
Q ss_pred cCeeEEEecCCCCcCc--H---HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDF--T---VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF--~---~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~~~ 97 (610)
++|.+.+|||||...- . .....+-...+.+|+|+.+..+-..++...++.++..+++++ +++|++|.......+
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~ 186 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAE 186 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHH
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHH
Confidence 4688999999986531 0 111111122245888888866555667777777777889876 899999976555677
Q ss_pred HHHHHHHHhCCCeeEeecccc
Q psy12559 98 VINQMRQKVGHNAAFLQIPIG 118 (610)
Q Consensus 98 ~~~~i~~~l~~~~~~~~~p~~ 118 (610)
..+.+++.++.... -.+|..
T Consensus 187 ~~~~l~~~~~~~vl-~~Ip~~ 206 (224)
T 1byi_A 187 YMTTLTRMIPAPLL-GEIPWL 206 (224)
T ss_dssp HHHHHHHHSSSCEE-EEECCC
T ss_pred HHHHHHHHcCCCEE-EECCCC
Confidence 88888888886544 245543
No 249
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.44 E-value=0.00088 Score=69.91 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=55.4
Q ss_pred eEEEecCCCCcCcH-------HHHHHHH---hhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC-CCH
Q psy12559 27 NINIIDTPGHVDFT-------VEVERAL---RVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG-ADP 95 (610)
Q Consensus 27 ~inlIDTPGh~dF~-------~ev~~al---~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~-~~~ 95 (610)
.++++||||..+.. .+....+ +..|..++++|+...........+.++...++|+++++||+|... ...
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccccH
Confidence 48999999976432 1233333 667999999998533222222224445567889999999999974 345
Q ss_pred HHHHHHHHHHhCC
Q psy12559 96 YRVINQMRQKVGH 108 (610)
Q Consensus 96 ~~~~~~i~~~l~~ 108 (610)
+...+.+++.+|.
T Consensus 293 ~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 293 EKADSLYANQLGE 305 (369)
T ss_dssp GGHHHHHHHHBTT
T ss_pred HHHHHHHHHhcCC
Confidence 6677788888885
No 250
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.16 E-value=0.016 Score=57.88 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=54.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC----CcchhhHH-------------HH--HHHHhc----C-CC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG----GVQSQTLT-------------VN--RQMKRY----D-VP 80 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~----Gv~~qt~~-------------v~--~~~~~~----~-ip 80 (610)
.|.+.|||||+.. ...+..++..+|.+|+++.... ++..--+. +| +.++.. + ++
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 180 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD 180 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc
Confidence 5789999999985 5678889999999999998753 22111111 33 333322 4 66
Q ss_pred eEEEEecccCCC-CCHHHHHHHHHHH---hCC
Q psy12559 81 CIAFINKLDRLG-ADPYRVINQMRQK---VGH 108 (610)
Q Consensus 81 ~i~~iNKiDr~~-~~~~~~~~~i~~~---l~~ 108 (610)
..+++|++|... ....++.+.+++. ++.
T Consensus 181 ~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~ 212 (286)
T 2xj4_A 181 WVVLRNRLATTEARNRKRLEDRLNALAKRVGF 212 (286)
T ss_dssp EEEEEECCTTCCGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEEEeeecCCCcchhHHHHHHHHHHHHHcCC
Confidence 779999999765 3445555666553 775
No 251
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.00 E-value=0.089 Score=44.64 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=55.5
Q ss_pred EEEEEeeCC-cc---EEEEEEEeceecCCCEEEecCCCeE---EEeceEEEeccCcccccCcccCCCEEEEc--CC--Cc
Q psy12559 265 AFKLEAGKF-GQ---LTYMRCYQGKLRKGEMIYNVRTDKK---VRVSRLVRLHSNEMEDVEEVLAGDIFALF--GV--DC 333 (610)
Q Consensus 265 V~k~~~~~~-G~---i~~~RV~sG~l~~g~~v~~~~~~~~---~~v~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~ 333 (610)
|-.++..+. |. +|-++|.+|+++.+..+.+.+.+.. -++.+|. +....++++.+|.=|+|. +. |.
T Consensus 15 Vr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLk----rfKdDVkEV~~G~ECGi~l~~fniDi 90 (120)
T 2crv_A 15 ILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLK----HHKDDISVIKTGMDCGLSLDEEKVEF 90 (120)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEE----SSSSCCSEECTTCEEEEECSCTTSCC
T ss_pred EeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhc----ccccccceecCCCEEEEEEccCCCCC
Confidence 334444433 66 9999999999999999999988753 3667776 446779999999999873 43 67
Q ss_pred ccCceEe
Q psy12559 334 ASGDTFV 340 (610)
Q Consensus 334 ~~Gdtl~ 340 (610)
+.||+|-
T Consensus 91 k~GDiIE 97 (120)
T 2crv_A 91 KPGDQVI 97 (120)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 8999985
No 252
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.90 E-value=0.043 Score=54.38 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=52.7
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~ 92 (610)
.+.+.|||||+..... +....++.+|++|+|+.+...-..+.....+.+.+.+++++ +++|++|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4789999999976542 33445578999999999987777778888888888899987 9999999653
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.80 E-value=0.04 Score=55.08 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=54.3
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG 92 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~ 92 (610)
.|.+.+||||...... +.....+.+|++|+|+.+...-..+....++.+.+.+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976543 34555678999999999887777778888888888898886 8999999764
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.70 E-value=0.079 Score=54.57 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=30.6
Q ss_pred HhhcCEEEEEEecCCCcchhhHHH---HHHHHhcCCCeEEEEecccCCC
Q psy12559 47 LRVLDGAILVLCAVGGVQSQTLTV---NRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 47 l~~~D~ailVvDa~~Gv~~qt~~v---~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
+..+|.+++| ||.. .......+ +..+...++|+++++||+|+..
T Consensus 128 ~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 5678998865 6655 33333333 4445678999999999999873
No 255
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.52 E-value=0.066 Score=52.52 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=55.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeEEEEecccCCCCCHHHHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCIAFINKLDRLGADPYRVINQ 101 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i~~iNKiDr~~~~~~~~~~~ 101 (610)
+.|.+.+||||+..+ ..+..++..+|.+|+++.....-...+..+.+.+.+. ++++.+++|+.++... ..+..+.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~-~~~~~~~ 219 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRT-HKTLFEI 219 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCS-CCHHHHH
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcch-HHHHHHH
Confidence 468899999999764 3577888899999999998654444456666777665 4577899999965432 3344444
Q ss_pred HHH
Q psy12559 102 MRQ 104 (610)
Q Consensus 102 i~~ 104 (610)
+++
T Consensus 220 l~~ 222 (267)
T 3k9g_A 220 LKT 222 (267)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 256
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.39 E-value=0.079 Score=51.02 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=59.2
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCC--C-eEEEEecccCCCCCHHHHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDV--P-CIAFINKLDRLGADPYRVINQ 101 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~i--p-~i~~iNKiDr~~~~~~~~~~~ 101 (610)
.|.+.+||||+..+. .+..++..+|.+|+++.....-...+..+++.+.+.+. + .-+++|+.|...... .+.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~~---~~~ 192 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRIT---SDE 192 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTSC---HHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCCC---HHH
Confidence 578999999997643 56778999999999998875545566777788877763 2 459999999753221 256
Q ss_pred HHHHhCCCe
Q psy12559 102 MRQKVGHNA 110 (610)
Q Consensus 102 i~~~l~~~~ 110 (610)
+++.++...
T Consensus 193 ~~~~~~~~v 201 (245)
T 3ea0_A 193 IEKVIGRPI 201 (245)
T ss_dssp HHHHHTSCE
T ss_pred HHHHhCCCe
Confidence 777777643
No 257
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.36 E-value=0.072 Score=53.55 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
.+.+.|||||+..... +.....+.+|++|+|+.+...-..+....++.+.+.+++++ +++|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33445578999999999988877888888888888898887 899999965
No 258
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.07 E-value=0.065 Score=53.86 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=57.1
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCeE-EEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
++|.+.+||||+..... .+..++..+|.+|+|+.....-...+..+++.+.+ .+++.+ +++||.+.. +.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-----~~ 228 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 228 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-----HH
Confidence 46889999999875532 23457889999999998764333445556666654 456666 899999842 45
Q ss_pred HHHHHHHhCCCee
Q psy12559 99 INQMRQKVGHNAA 111 (610)
Q Consensus 99 ~~~i~~~l~~~~~ 111 (610)
.+++.+.++....
T Consensus 229 ~~~~~~~~g~~v~ 241 (307)
T 3end_A 229 VDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCCce
Confidence 6777777776544
No 259
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=94.01 E-value=0.066 Score=56.20 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=58.1
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHHHHhcCCC-----eEEEEecccC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP-----CIAFINKLDR 90 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~~~~~~ip-----~i~~iNKiDr 90 (610)
++++.+.|||||...+ ..+..++..+|.+|+|+....-- -.+...+++.+++.+.+ ++.++|+.|.
T Consensus 245 ~~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 245 ADDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hhcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 3568899999999776 45778899999999999763210 12234455666655544 3568999983
Q ss_pred CCCCHHHHHHHHHHHhCCCeeEeecc
Q psy12559 91 LGADPYRVINQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 91 ~~~~~~~~~~~i~~~l~~~~~~~~~p 116 (610)
. ..-....+.+++.+|.......+|
T Consensus 323 ~-~~~~~~~~~~~~~~g~~vl~~~IP 347 (403)
T 3ez9_A 323 K-RDHETSHSLAREVYASNILDSSLP 347 (403)
T ss_dssp C-HHHHHHHHHHHHHHTTSEECCC--
T ss_pred c-hhHHHHHHHHHHHhhHhhhceeCC
Confidence 2 224566788888898765544555
No 260
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.81 E-value=0.066 Score=52.10 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=56.6
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC---------CCeEEEEecccCCCCCH
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD---------VPCIAFINKLDRLGADP 95 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~---------ip~i~~iNKiDr~~~~~ 95 (610)
.|.+.+||||+..+ ..+..++..+|.+|+|++....-...+..+++.+...+ .+.-+++|+.|......
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~ 190 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR 190 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHT
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcccccc
Confidence 68899999999655 47788999999999999987554555666666666544 34569999998531000
Q ss_pred HH--HHHHHHHHhCCC
Q psy12559 96 YR--VINQMRQKVGHN 109 (610)
Q Consensus 96 ~~--~~~~i~~~l~~~ 109 (610)
.+ .++++.+.++..
T Consensus 191 ~~~~~~~~~~~~~~~~ 206 (260)
T 3q9l_A 191 GDMLSMEDVLEILRIK 206 (260)
T ss_dssp TSSCCHHHHHHHHCSE
T ss_pred ccccCHHHHHHHhCCc
Confidence 00 135566666643
No 261
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.15 E-value=0.43 Score=50.07 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=43.5
Q ss_pred eEEEecCCCCcC---cHHHHHHH--HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCC
Q psy12559 27 NINIIDTPGHVD---FTVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRL 91 (610)
Q Consensus 27 ~inlIDTPGh~d---F~~ev~~a--l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~ 91 (610)
.++++|+||... -..+.... +...|..++ +|+.. .+.|-..+.+.+...+.|.++++||.|..
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 689999999642 12233332 233354444 77654 47788888888888899999999999864
No 262
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.02 E-value=0.46 Score=48.09 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=48.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHH----h--------hcCEEEEEEecCCCcchhhHHHHHHHHhc--CCCeE-EEEecc
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERAL----R--------VLDGAILVLCAVGGVQSQTLTVNRQMKRY--DVPCI-AFINKL 88 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al----~--------~~D~ailVvDa~~Gv~~qt~~v~~~~~~~--~ip~i-~~iNKi 88 (610)
+++.+.||||||...........+ + .+|.+++|+|+..| . ..+++++.+ .+++. +++||+
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~~~~~i~GvVltk~ 264 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFSKVADVSGIILTKM 264 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHTTTSCCCEEEEECG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHhhcCCCcEEEEeCC
Confidence 478999999999766543332222 1 26899999999855 1 223334333 34443 889999
Q ss_pred cCCCCCHHHHHHHHHHHhCCCe
Q psy12559 89 DRLGADPYRVINQMRQKVGHNA 110 (610)
Q Consensus 89 Dr~~~~~~~~~~~i~~~l~~~~ 110 (610)
|... ... .+.++...++...
T Consensus 265 d~~~-~~g-~~~~~~~~~~~Pi 284 (320)
T 1zu4_A 265 DSTS-KGG-IGLAIKELLNIPI 284 (320)
T ss_dssp GGCS-CTT-HHHHHHHHHCCCE
T ss_pred CCCC-chh-HHHHHHHHHCcCE
Confidence 9753 223 3445555666443
No 263
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.94 E-value=0.16 Score=53.64 Aligned_cols=82 Identities=26% Similarity=0.307 Sum_probs=48.3
Q ss_pred cCeeEEEecCCCCcCc----HHHHHHH--HhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCC-eEEEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVDF----TVEVERA--LRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVP-CIAFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~ev~~a--l~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip-~i~~iNKiDr~~~~~~ 96 (610)
+++.+.||||||.... ..++... +...|.+++|+|+..| .......+... .+++ .-+++||+|.. ....
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~-~~~g 254 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD-ARGG 254 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGC-SSCH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCc-ccHH
Confidence 5788999999996543 2333222 2247999999999865 12222222222 2355 35899999975 3333
Q ss_pred HHHHHHHHHhCCCe
Q psy12559 97 RVINQMRQKVGHNA 110 (610)
Q Consensus 97 ~~~~~i~~~l~~~~ 110 (610)
.+ .++...++...
T Consensus 255 ~a-lsi~~~~g~PI 267 (425)
T 2ffh_A 255 AA-LSARHVTGKPI 267 (425)
T ss_dssp HH-HHHHHHHCCCE
T ss_pred HH-HHHHHHHCCCE
Confidence 33 34556666543
No 264
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.93 E-value=0.26 Score=47.26 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=63.8
Q ss_pred cCeeEEEecCCCCc-----C--cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCCCH
Q psy12559 24 KDHNINIIDTPGHV-----D--FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADP 95 (610)
Q Consensus 24 ~~~~inlIDTPGh~-----d--F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~~~ 95 (610)
+++.+.+||+||.. + ...++.+.+ .+-+|+|+++..|--.++...++.+...++++. +++|+++......
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l--~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~~ 186 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL--QIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSNIKYI 186 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH--TCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSCH
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHc--CCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchhh
Confidence 46889999999732 1 233333333 356899999998887888888888888999987 8999998754556
Q ss_pred HHHHHHHHHHhCCCe
Q psy12559 96 YRVINQMRQKVGHNA 110 (610)
Q Consensus 96 ~~~~~~i~~~l~~~~ 110 (610)
++..+.+++.++...
T Consensus 187 ~~~~~~l~~~~g~pv 201 (228)
T 3of5_A 187 DEQINTIEELSGYKC 201 (228)
T ss_dssp HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhCCCE
Confidence 778888988887543
No 265
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.31 E-value=0.22 Score=52.41 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=40.2
Q ss_pred EEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCC-CHHHHHHHHHHHhCC
Q psy12559 52 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGA-DPYRVINQMRQKVGH 108 (610)
Q Consensus 52 ~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~-~~~~~~~~i~~~l~~ 108 (610)
++++|+|+..|.......+++.+. .+.|+|+++||+|.+.. ........|++.|..
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~ 207 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVS 207 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHH
Confidence 366788999999999988888876 78999999999998742 234455667665643
No 266
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.74 E-value=0.48 Score=50.98 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=58.3
Q ss_pred EEEEEeeCC-ccEEEEEEEeceecCCCEEEecCCCe---EEEeceEEEeccCcccccCcccCCCEEEE--cCC-CcccCc
Q psy12559 265 AFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDK---KVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-DCASGD 337 (610)
Q Consensus 265 V~k~~~~~~-G~i~~~RV~sG~l~~g~~v~~~~~~~---~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-~~~~Gd 337 (610)
|-.++..++ |.++-++|..|++++|..+.+.+.|. .-++.+|. +...+++++..|.=|+| .+. +.+.||
T Consensus 413 v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~----~~k~~v~e~~~g~ecgi~~~~~~~~~~gd 488 (501)
T 1zo1_I 413 VRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR----RFKDDVNEVRNGMECGIGVKNYNDVRTGD 488 (501)
T ss_dssp EEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE----ETTEEESEEETTCCEEEEBCCCTTCCTTC
T ss_pred EEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc----ccCccccEECCCCEEEEEEcCcCCCCCCC
Confidence 445555556 99999999999999999999988774 45777777 44678999999999987 445 789999
Q ss_pred eEe
Q psy12559 338 TFV 340 (610)
Q Consensus 338 tl~ 340 (610)
+|-
T Consensus 489 ~~~ 491 (501)
T 1zo1_I 489 VIE 491 (501)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 267
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=91.67 E-value=0.12 Score=53.78 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=30.9
Q ss_pred hcceeecceeEEEecC-----------------eeEEEecCCCCcCcHH-------HHHHHHhhcCEEEEEEecCC
Q psy12559 10 RGITIQSAATYTLWKD-----------------HNINIIDTPGHVDFTV-------EVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 10 RgiTi~s~~~~~~~~~-----------------~~inlIDTPGh~dF~~-------ev~~al~~~D~ailVvDa~~ 61 (610)
.+.|+......+.+.+ ..++|+||||...+.. .....++.+|++++|+|+.+
T Consensus 53 p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 53 PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 3456666655555543 3599999999988765 46778899999999999974
No 268
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.56 E-value=0.25 Score=48.94 Aligned_cols=85 Identities=12% Similarity=0.008 Sum_probs=52.7
Q ss_pred CeeEEEecCCCCcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCeE-EEEecccCCCCCHHHH
Q psy12559 25 DHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
+|.+.||||||......- .......+|.+|+++.+...-...+..+++.+.+ .+++.+ +++|+.+.. ...+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--~~~~~ 195 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD--REDEL 195 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--THHHH
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch--hHHHH
Confidence 688999999996432111 1122357999999998754323333344444432 367754 889998632 34567
Q ss_pred HHHHHHHhCCCee
Q psy12559 99 INQMRQKVGHNAA 111 (610)
Q Consensus 99 ~~~i~~~l~~~~~ 111 (610)
++.+.+.++....
T Consensus 196 ~~~l~~~~g~~~l 208 (289)
T 2afh_E 196 IIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHTSCEE
T ss_pred HHHHHHHcCcccc
Confidence 7888888876543
No 269
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.49 E-value=0.3 Score=47.74 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=53.8
Q ss_pred cCeeEEEecCCCCcCcHHH-HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCe-EEEEecccCCCCCHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVE-VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPC-IAFINKLDRLGADPYR 97 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~e-v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~-i~~iNKiDr~~~~~~~ 97 (610)
+.|.+.+|||||......- .......+|.+|+++.+...-...+..+++.+.. .+++. -+++|+.+.. . ..+
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-~-~~~ 191 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA-N-EYE 191 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-C-CHH
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-h-hHH
Confidence 3588999999996432111 1112257999999998764333334444454443 35675 4899998743 2 256
Q ss_pred HHHHHHHHhCCCee
Q psy12559 98 VINQMRQKVGHNAA 111 (610)
Q Consensus 98 ~~~~i~~~l~~~~~ 111 (610)
.++.+.+.++....
T Consensus 192 ~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 192 LLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCccc
Confidence 77888888876543
No 270
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.83 E-value=0.87 Score=49.42 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred EEEEEEEEeeC----CccEEEEEEEeceecCCCEEEecCCCeEE---EeceEEEeccCcccccCcccCCCEEEE--cC-C
Q psy12559 262 IALAFKLEAGK----FGQLTYMRCYQGKLRKGEMIYNVRTDKKV---RVSRLVRLHSNEMEDVEEVLAGDIFAL--FG-V 331 (610)
Q Consensus 262 ~~~V~k~~~~~----~G~i~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l 331 (610)
.|-|-+++..+ .|.++-++|.+|++++|..+.+.+.|... ++.+|. +....++++.+|.=|+| .| +
T Consensus 449 ~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk----~~k~~v~ev~~g~ecgi~~~~~~ 524 (537)
T 3izy_P 449 EASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK----HHKDDTSVVKTGMDCGLSLDEEK 524 (537)
T ss_dssp EEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC----CSSCCCSEEETTCEEEEESSSSC
T ss_pred EEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc----ccCcccceEcCCCEEEEEEcCcc
Confidence 45555666554 26899999999999999999999887543 455554 45678999999999987 45 5
Q ss_pred -CcccCceEe
Q psy12559 332 -DCASGDTFV 340 (610)
Q Consensus 332 -~~~~Gdtl~ 340 (610)
+.+.||+|-
T Consensus 525 ~~~~~gd~ie 534 (537)
T 3izy_P 525 IEFKVGDAII 534 (537)
T ss_dssp SSCSCCCEEE
T ss_pred cCCCCCCEEE
Confidence 789999874
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.64 E-value=0.41 Score=47.87 Aligned_cols=81 Identities=25% Similarity=0.339 Sum_probs=46.8
Q ss_pred cCeeEEEecCCCCcCc----HHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccCCCCCHH
Q psy12559 24 KDHNINIIDTPGHVDF----TVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDRLGADPY 96 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr~~~~~~ 96 (610)
.++.+.||||||.... ..++....+ ..|.+++|+|+..+ ..+....+.... ++++ -+++||+|... ...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~~-~~g 254 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGDA-RGG 254 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGCS-SCH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCCc-cHH
Confidence 4789999999986533 223322222 47999999998754 222222222221 3554 48899999753 333
Q ss_pred HHHHHHHHHhCCC
Q psy12559 97 RVINQMRQKVGHN 109 (610)
Q Consensus 97 ~~~~~i~~~l~~~ 109 (610)
.++ ++...++..
T Consensus 255 ~~~-~~~~~~~~p 266 (295)
T 1ls1_A 255 AAL-SARHVTGKP 266 (295)
T ss_dssp HHH-HHHHHHCCC
T ss_pred HHH-HHHHHHCcC
Confidence 333 444555544
No 272
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.31 E-value=0.24 Score=51.75 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=57.4
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCc-------chhhHHHHHHHHhcCCC--e---EEEEecccCC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGV-------QSQTLTVNRQMKRYDVP--C---IAFINKLDRL 91 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv-------~~qt~~v~~~~~~~~ip--~---i~~iNKiDr~ 91 (610)
++|.+.|||||...+. .+..++..+|.+|+|+....-- -.+...+++.+++.+.+ . +.++|+.+..
T Consensus 243 ~~yD~ViiD~pp~~~~--~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~ 320 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDA--FLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK 320 (398)
T ss_dssp TTCSEEEEEECSCCSH--HHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC
T ss_pred ccCCEEEEeCCCCccH--HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc
Confidence 5689999999988754 4777889999999999763210 01223344555554433 2 4578888742
Q ss_pred CCCHHHHHHHHHHHhCCCeeEeecc
Q psy12559 92 GADPYRVINQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~~~~~~p 116 (610)
.......+.+++.++.......+|
T Consensus 321 -~~~~~~~~~l~~~~g~~vl~~~IP 344 (398)
T 3ez2_A 321 -ADHKYCHSLAKEVFGGDMLDVFLP 344 (398)
T ss_dssp -HHHHHHHHHHHHHHGGGBCSCCEE
T ss_pred -hhHHHHHHHHHHHhcccccceecc
Confidence 224567788888888654433344
No 273
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.66 E-value=0.83 Score=46.31 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=46.7
Q ss_pred CEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCC-----------CHHHHHHHHHHHhCCCeeEeeccc
Q psy12559 51 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA-----------DPYRVINQMRQKVGHNAAFLQIPI 117 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~-----------~~~~~~~~i~~~l~~~~~~~~~p~ 117 (610)
+++++|.......-..+++.++.+.+.++|+. +++|+..-... ..++.++++.+.++.-++ ..+|.
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~-~~vP~ 299 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHV-VKVPQ 299 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEE-EEEEC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCE-EEecC
Confidence 47888888777777788999999999999996 89999983211 123456667777754333 44553
No 274
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.33 E-value=1.3 Score=45.19 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=49.7
Q ss_pred cCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCC----------CHHHHHHHHHHHhCCCeeEeeccc
Q psy12559 50 LDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA----------DPYRVINQMRQKVGHNAAFLQIPI 117 (610)
Q Consensus 50 ~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~----------~~~~~~~~i~~~l~~~~~~~~~p~ 117 (610)
.|++++|.-...-....+++.++.+++.++|+. +|+|++.-... .+...++++.+.++..+ ...+|+
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKV-IAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSE-EEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 478899988777667788999999999999996 99999986532 14456777777776443 234553
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.04 E-value=0.78 Score=46.05 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=45.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHH-------HHh-----hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCe-EEEEecccC
Q psy12559 24 KDHNINIIDTPGHVDFTVEVER-------ALR-----VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPC-IAFINKLDR 90 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~-------al~-----~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~-i~~iNKiDr 90 (610)
.++.+.+|||||.......... .+. ..|..++|+|+..|- ......+...+ ..++ -+++||+|.
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCC
Confidence 4678999999997544433221 221 268899999997441 11112222222 2443 477899997
Q ss_pred CCCCHHHHHHHHHHHhCCC
Q psy12559 91 LGADPYRVINQMRQKVGHN 109 (610)
Q Consensus 91 ~~~~~~~~~~~i~~~l~~~ 109 (610)
. +.... ..++...++..
T Consensus 262 ~-~~gG~-~l~~~~~~~~P 278 (306)
T 1vma_A 262 T-AKGGI-TLAIARELGIP 278 (306)
T ss_dssp C-SCTTH-HHHHHHHHCCC
T ss_pred c-cchHH-HHHHHHHHCCC
Confidence 5 33333 44555666644
No 276
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=87.92 E-value=0.35 Score=49.85 Aligned_cols=35 Identities=9% Similarity=-0.104 Sum_probs=29.1
Q ss_pred CeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC
Q psy12559 25 DHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~ 61 (610)
.|.+.|||||... ...+..++..+|.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCCh
Confidence 7899999999764 3557788899999999998753
No 277
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=87.42 E-value=2 Score=47.31 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCeEEEEE--EEEeeCCccEEEEEEEeceecCCCEEEecCCCe-EEEeceEEEeccCcccccCcccCCCEEEE--cCC--
Q psy12559 259 HPFIALAF--KLEAGKFGQLTYMRCYQGKLRKGEMIYNVRTDK-KVRVSRLVRLHSNEMEDVEEVLAGDIFAL--FGV-- 331 (610)
Q Consensus 259 ~p~~~~V~--k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~-~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-- 331 (610)
+|..+.|. .++..++|.++-++|..|++++|..|.+ +.|. .-++.+|. +...+++++.+|.=|+| .|.
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~----~~k~~v~~~~~g~e~gi~~~~~~~ 536 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQ----DKGENLKSASRGQKVAMAIKDAVY 536 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEE----ETTEEESEEETTCCEEEEEETCCB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhc----ccCccccccCCCCEEEEEEeCccc
Confidence 34445433 2445555899999999999999999998 5453 33555555 44678999999999986 453
Q ss_pred --CcccCceEe
Q psy12559 332 --DCASGDTFV 340 (610)
Q Consensus 332 --~~~~Gdtl~ 340 (610)
+.+.||+|-
T Consensus 537 ~~~~~~~d~~~ 547 (594)
T 1g7s_A 537 GKTIHEGDTLY 547 (594)
T ss_dssp TTTBCTTCEEE
T ss_pred CCCCCCCCEEE
Confidence 688999987
No 278
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=86.81 E-value=1 Score=45.46 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=48.1
Q ss_pred CEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCCC----------CHHHHHHHHHHHhCCCeeEeeccc
Q psy12559 51 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGA----------DPYRVINQMRQKVGHNAAFLQIPI 117 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~~----------~~~~~~~~i~~~l~~~~~~~~~p~ 117 (610)
+++++|.-...-....+++.++.+.+.++|+. +|+|++.-... .+.+.++++.+.++..+ ...+|+
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~iPl 299 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKV-VAEVPL 299 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSE-EEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 58888888777667788999999999999996 99999986521 13455677777776443 234453
No 279
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.39 E-value=0.46 Score=52.37 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=57.5
Q ss_pred ecCeeEEEecCCCCcC----------c-------------HHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhc
Q psy12559 23 WKDHNINIIDTPGHVD----------F-------------TVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRY 77 (610)
Q Consensus 23 ~~~~~inlIDTPGh~d----------F-------------~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~ 77 (610)
|..+.+.+||||+-.. + ..+....++ .+|.+++|+......-..+...++.+.+.
T Consensus 438 ~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~ 517 (589)
T 1ihu_A 438 EAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERA 517 (589)
T ss_dssp GGGTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHC
Confidence 4568899999988521 0 011122232 45899999987776677888899999999
Q ss_pred CCCeE-EEEecccCCC-C----------CHHHHHHHHHHHhCC
Q psy12559 78 DVPCI-AFINKLDRLG-A----------DPYRVINQMRQKVGH 108 (610)
Q Consensus 78 ~ip~i-~~iNKiDr~~-~----------~~~~~~~~i~~~l~~ 108 (610)
+++.. +++|+++... . ...+.++.+++.++.
T Consensus 518 g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 560 (589)
T 1ihu_A 518 GIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHAS 560 (589)
T ss_dssp TCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99985 8999998651 1 112345666666654
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.98 E-value=0.67 Score=46.28 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=45.1
Q ss_pred cCeeEEEecCCCCcCcHHHHH----HHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcC-CCe-EEEEecccCCCCCH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVE----RALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYD-VPC-IAFINKLDRLGADP 95 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~----~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~-ip~-i~~iNKiDr~~~~~ 95 (610)
.++.+.||||||......... ..++ ..|..++|+|+..+.. .+.+.+...+ ++. -+++||+|.. ...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~-~~~ 255 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET-TSL 255 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC-SCC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc-cch
Confidence 578899999999876543322 2222 2578899999986631 2222233222 232 3677999976 333
Q ss_pred HHHHHHHHHHhC
Q psy12559 96 YRVINQMRQKVG 107 (610)
Q Consensus 96 ~~~~~~i~~~l~ 107 (610)
..++ ++...++
T Consensus 256 g~~~-~~~~~~~ 266 (296)
T 2px0_A 256 GSVF-NILAESK 266 (296)
T ss_dssp HHHH-HHHHTCS
T ss_pred hHHH-HHHHHHC
Confidence 3333 3444444
No 281
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=84.15 E-value=2.8 Score=40.58 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=58.4
Q ss_pred cCeeEEEecCCCCc-----C---cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC-CC
Q psy12559 24 KDHNINIIDTPGHV-----D---FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL-GA 93 (610)
Q Consensus 24 ~~~~inlIDTPGh~-----d---F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~-~~ 93 (610)
+++.+.+||+||-. + ...++.+ ...+-+|+|+|+..|--.++...++.+...++++. +++||+... ..
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~--~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~ 202 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAV--DVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGL 202 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHH--HTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCH
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHH--HcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhh
Confidence 35789999999743 1 2223322 34567899999998887888888888888899987 899998532 11
Q ss_pred CHHHHHHHHHHHhCCCeeEeecc
Q psy12559 94 DPYRVINQMRQKVGHNAAFLQIP 116 (610)
Q Consensus 94 ~~~~~~~~i~~~l~~~~~~~~~p 116 (610)
..+...+.|++. -++.-.+|
T Consensus 203 ~~~~~~~~le~~---vpvLG~iP 222 (251)
T 3fgn_A 203 VAASNRSALARI---AMVRAALP 222 (251)
T ss_dssp HHHHHHHHHHHH---SCEEEEEE
T ss_pred hhhhHHHHHHHh---CCEEEEee
Confidence 234445566555 33433445
No 282
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=83.70 E-value=0.69 Score=47.49 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=35.0
Q ss_pred hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEeccc
Q psy12559 49 VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLD 89 (610)
Q Consensus 49 ~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiD 89 (610)
.+|.+++|+....-.-..+++.++.+.+.++|.. +|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 5789999998766556678899999999999986 8999998
No 283
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=82.76 E-value=0.8 Score=45.05 Aligned_cols=57 Identities=12% Similarity=0.267 Sum_probs=43.5
Q ss_pred cCEEEEEEecC-CCcchhhHHHHHHHHhcCCCeEEEEecccCCCCC-HHHHHHHHHHHhC
Q psy12559 50 LDGAILVLCAV-GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGAD-PYRVINQMRQKVG 107 (610)
Q Consensus 50 ~D~ailVvDa~-~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~-~~~~~~~i~~~l~ 107 (610)
+..+++++|.. +|..++...+++.+.+. +++|+++||+|....+ .......+++.+.
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~ 170 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQRVRKELE 170 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHHHHHHHHH
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 47889999954 89999999999988876 9999999999988432 2334455555553
No 284
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=81.32 E-value=2.4 Score=46.78 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=42.0
Q ss_pred CeeEEEecCCCCcCc---------HHHHHHHHhh-----cCEEEEEEecCCCcchhh-HHHHHHHHhcCCCeEEEEeccc
Q psy12559 25 DHNINIIDTPGHVDF---------TVEVERALRV-----LDGAILVLCAVGGVQSQT-LTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 25 ~~~inlIDTPGh~dF---------~~ev~~al~~-----~D~ailVvDa~~Gv~~qt-~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.-.+.|+|.||...- ..++..-++. ...+++++++......+. ..+++.+...+.+.|+|+||+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 346999999985431 1233333332 256667777665544332 4556666667899999999999
Q ss_pred CCC
Q psy12559 90 RLG 92 (610)
Q Consensus 90 r~~ 92 (610)
...
T Consensus 226 lv~ 228 (608)
T 3szr_A 226 LVD 228 (608)
T ss_dssp GSS
T ss_pred hcC
Confidence 984
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.16 E-value=1.7 Score=44.09 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=47.0
Q ss_pred CeeEEEecCCCCcC----cHHHHHHHHh--hcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHH
Q psy12559 25 DHNINIIDTPGHVD----FTVEVERALR--VLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRV 98 (610)
Q Consensus 25 ~~~inlIDTPGh~d----F~~ev~~al~--~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~ 98 (610)
++.+.++||+|... +..++..-.+ ..|-.++++|+..|- +.....+...+.--..++++||+|.. +....+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a~~G~~ 287 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-ARGGAA 287 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-SCCHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-cchhHH
Confidence 56678899999643 4444332222 369999999988762 33333333332223347899999973 333333
Q ss_pred HHHHHHHhCCC
Q psy12559 99 INQMRQKVGHN 109 (610)
Q Consensus 99 ~~~i~~~l~~~ 109 (610)
+ ++...++..
T Consensus 288 l-~~~~~~~~p 297 (328)
T 3e70_C 288 L-SISYVIDAP 297 (328)
T ss_dssp H-HHHHHHTCC
T ss_pred H-HHHHHHCCC
Confidence 3 344445543
No 286
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=79.02 E-value=0.92 Score=49.80 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=38.7
Q ss_pred cCeeEEEecCCCCcCcHH------HHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcC
Q psy12559 24 KDHNINIIDTPGHVDFTV------EVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYD 78 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~------ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ 78 (610)
.+..+.||||||..+... ....++..+-.+++|+|+..++..|...++..+.+.+
T Consensus 89 ~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 89 PGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp TTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred CCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 567899999999865432 1223344434458999999999999888777665543
No 287
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=78.40 E-value=2.3 Score=44.11 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.3
Q ss_pred cceeecceeEEEecC-----------------eeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCC
Q psy12559 11 GITIQSAATYTLWKD-----------------HNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 11 giTi~s~~~~~~~~~-----------------~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~ 61 (610)
+.|+....-.+.+.+ ..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 53 ~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 53 YATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457776666666654 5789999999654 44467788899999999999975
No 288
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=78.35 E-value=6.2 Score=40.18 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=41.9
Q ss_pred CEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCCC-C----C--------HHHHHHHHHHHhC
Q psy12559 51 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLG-A----D--------PYRVINQMRQKVG 107 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~~-~----~--------~~~~~~~i~~~l~ 107 (610)
+++++|.-...-.-..+++.++.+.+.++|+. +|+|++.-.. . . -+..++++.+.++
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~ 302 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE 302 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc
Confidence 57888887766666778899999999999995 9999988643 1 1 1234667777775
No 289
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=76.68 E-value=4.6 Score=38.82 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=49.5
Q ss_pred cCeeEEEecCCCCcC-------cHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCC
Q psy12559 24 KDHNINIIDTPGHVD-------FTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLG 92 (610)
Q Consensus 24 ~~~~inlIDTPGh~d-------F~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~ 92 (610)
..+.+.+||+||... ...++.+. ...-+|+|+|+..|.-.++...++.++..+++.=+++|+++...
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~--l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~~~ 203 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALK--LKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNT 203 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHH--HTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTTCC
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHH--cCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence 367899999998431 23334333 33458999999999778888888888889999339999998653
No 290
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.86 E-value=7.1 Score=41.70 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=45.1
Q ss_pred cCeeEEEecCCCCcCc----HHH---HHHHHhh-----cCEEEEEEecCCCcchhhHHHHHHHHh-cCCCeEEEEecccC
Q psy12559 24 KDHNINIIDTPGHVDF----TVE---VERALRV-----LDGAILVLCAVGGVQSQTLTVNRQMKR-YDVPCIAFINKLDR 90 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF----~~e---v~~al~~-----~D~ailVvDa~~Gv~~qt~~v~~~~~~-~~ip~i~~iNKiDr 90 (610)
+++.+.||||+|.... ..+ +.+.++. -+-.+||+|+..|-.. ...++...+ .++ ..+++||+|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~i-tgvIlTKLD~ 450 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGL-TGITLTKLDG 450 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCC-SEEEEECGGG
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCC-CEEEEEcCCC
Confidence 4677899999997533 222 2222331 3578999999877321 222332222 233 3578999997
Q ss_pred CCCCHHHHHHHHHHHhCCC
Q psy12559 91 LGADPYRVINQMRQKVGHN 109 (610)
Q Consensus 91 ~~~~~~~~~~~i~~~l~~~ 109 (610)
. +... .+-.+...++..
T Consensus 451 t-akgG-~~lsi~~~~~~P 467 (503)
T 2yhs_A 451 T-AKGG-VIFSVADQFGIP 467 (503)
T ss_dssp C-SCCT-HHHHHHHHHCCC
T ss_pred c-cccc-HHHHHHHHHCCC
Confidence 4 2222 344455555543
No 291
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=73.55 E-value=15 Score=37.09 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=42.5
Q ss_pred CEEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC--C-CC---------HHHHHHHHHHHhCC
Q psy12559 51 DGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL--G-AD---------PYRVINQMRQKVGH 108 (610)
Q Consensus 51 D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~--~-~~---------~~~~~~~i~~~l~~ 108 (610)
+++++|.-+..-.-..+++.+..+.+.++|+. +|+|++.-. . .+ -++.++++.+.++.
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~ 293 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDE 293 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccC
Confidence 47788877666556678899999999999996 999998732 1 11 23457777777764
No 292
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=63.17 E-value=8.6 Score=42.03 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=34.0
Q ss_pred EEEEEEecCCCcchhhHHHHHHHHhcCCCeE-EEEecccCC
Q psy12559 52 GAILVLCAVGGVQSQTLTVNRQMKRYDVPCI-AFINKLDRL 91 (610)
Q Consensus 52 ~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i-~~iNKiDr~ 91 (610)
.+++|+......-..++..++.+.+.+++.. +++|+++..
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6889998877777788899999999999886 889999854
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=62.02 E-value=13 Score=36.85 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=46.2
Q ss_pred CeeEEEecCCCCcCc----HHHHH---HHHh-----hcCEEEEEEecCCCcchhhHHHHHHHH-hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDF----TVEVE---RALR-----VLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF----~~ev~---~al~-----~~D~ailVvDa~~Gv~~qt~~v~~~~~-~~~ip~i~~iNKiDr~ 91 (610)
++.+.++||+|..+. ..+.. .++. ..+..++++|+..|... ...++... ..++ .++++||+|..
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~--~~~~~~~~~~~~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG--LEQAKKFHEAVGL-TGVIVTKLDGT 260 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH--HHHHHHHHHHHCC-SEEEEECTTSS
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH--HHHHHHHHHHcCC-cEEEEECCccc
Confidence 456789999996543 22221 1111 24678999999877432 22233332 3344 67899999975
Q ss_pred CCCHHHHHHHHHHHhCCCe
Q psy12559 92 GADPYRVINQMRQKVGHNA 110 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~ 110 (610)
+... ..-.+...++...
T Consensus 261 -a~gg-~~l~i~~~~~~pi 277 (304)
T 1rj9_A 261 -AKGG-VLIPIVRTLKVPI 277 (304)
T ss_dssp -CCCT-THHHHHHHHCCCE
T ss_pred -cccc-HHHHHHHHHCCCe
Confidence 3322 3335556666443
No 294
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=60.52 E-value=2.7 Score=43.19 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=29.5
Q ss_pred ecCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCC
Q psy12559 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVG 61 (610)
Q Consensus 23 ~~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~ 61 (610)
|..+.+.+||||.. ....+..++..+|.+++|+....
T Consensus 257 ~~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 257 MDNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp TSCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred cCCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 35788999999944 44578888999999999987643
No 295
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=42.51 E-value=25 Score=31.31 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHHHhhcCEEEEEEecCCCcchhhHHHH--HHHHhcCCCeEEEEecc
Q psy12559 44 ERALRVLDGAILVLCAVGGVQSQTLTVN--RQMKRYDVPCIAFINKL 88 (610)
Q Consensus 44 ~~al~~~D~ailVvDa~~Gv~~qt~~v~--~~~~~~~ip~i~~iNKi 88 (610)
..+++.||++|.++|.-.|..++.=+.| -.|...|+|++++-+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEcCc
Confidence 6889999999999996555555554555 46778999999887654
No 296
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=41.20 E-value=24 Score=27.80 Aligned_cols=74 Identities=7% Similarity=0.016 Sum_probs=46.3
Q ss_pred eEEEEEEEEeeCCccEEEEEEEeceecCCCEEEecC-CC--eEEEeceEEEeccCcccccCcc-cCCCEEEEcC-CCccc
Q psy12559 261 FIALAFKLEAGKFGQLTYMRCYQGKLRKGEMIYNVR-TD--KKVRVSRLVRLHSNEMEDVEEV-LAGDIFALFG-VDCAS 335 (610)
Q Consensus 261 ~~~~V~k~~~~~~G~i~~~RV~sG~l~~g~~v~~~~-~~--~~~~v~~i~~~~g~~~~~v~~a-~aGdiv~i~g-l~~~~ 335 (610)
|++.|... +.....+.+. ....+..||.|.+.. .+ ...++.+|+-.. -.+++.| .+|+++-|.- ..+..
T Consensus 8 fvG~V~~~--~~~~g~~~ie-~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~---G~~i~~A~~~~~~v~i~~~~~~~~ 81 (89)
T 4he6_A 8 FAGLVLGY--DPETGIATVQ-QRNHFRPGDEVEFFGPEIENFTQVIEKIWDED---GNELDAARHPLQIVKFKVKRPLFP 81 (89)
T ss_dssp CSEEEEEE--ETTTTEEEEE-ESSCBCTTCEEEEESTTSCCEEEECCCEEETT---SCEESCBCSTTCEEEEECSSCCCT
T ss_pred EEEEEEEE--eCCCCEEEEE-EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCC---CCEeeEcCCCCeEEEEECCCCCCC
Confidence 55555432 3332244443 367999999998643 33 346777876533 4468888 8999998843 25667
Q ss_pred CceEe
Q psy12559 336 GDTFV 340 (610)
Q Consensus 336 Gdtl~ 340 (610)
||.|-
T Consensus 82 ~dilR 86 (89)
T 4he6_A 82 YNMMR 86 (89)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 77664
No 297
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=36.04 E-value=58 Score=28.98 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHH
Q psy12559 43 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQM 102 (610)
Q Consensus 43 v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i 102 (610)
=..+++.||++|.++|+.+ ....|..=+-.|...++|++++.+-.-..+.+-.+.+..+
T Consensus 63 D~~~i~~aD~viA~ldg~~-~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~ 121 (162)
T 3ehd_A 63 DTENVLASDLLVALLDGPT-IDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDAL 121 (162)
T ss_dssp HHHHHHTCSEEEEECCSSS-CCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHT
T ss_pred HHHHHHHCCEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhh
Confidence 3467899999999998542 4556655566788899999988877666665544444444
No 298
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=35.89 E-value=96 Score=27.28 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=51.0
Q ss_pred eEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccCCCCCHHHHHHHHHHHh
Q psy12559 27 NINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKV 106 (610)
Q Consensus 27 ~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr~~~~~~~~~~~i~~~l 106 (610)
++.|--||. .++..-+..-++.+|+.+++-. ......|+.-.+.|.++++|.+++ |............+.+-|
T Consensus 52 ~Y~L~E~~~-~~y~~Rt~~NV~DSDgTLI~~~--g~lsGGT~lT~~~a~~~~KP~l~i----~l~~~~~~~~~~~v~~wl 124 (158)
T 3imk_A 52 TYQLQEMPT-SDYSKRTEKNVLDSDGTLIISH--GILKGGSALTEFFAEQYKKPCLHI----DLDRISIEDAATLINSWT 124 (158)
T ss_dssp TSCCEECSS-CCHHHHHHHHHHTSSEEEEEES--SSCCHHHHHHHHHHHHTTCCEEEE----ETTTSCHHHHHHHHHHHH
T ss_pred cccccccCC-CCHHHHHHHhhhhcCeEEEEec--CCCCCchHHHHHHHHHhCCCEEEE----ecccccccchHHHHHHHH
Confidence 355666666 4677788888999999988873 467888988899999999998752 333333444455554433
No 299
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=33.38 E-value=57 Score=28.70 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=33.4
Q ss_pred HHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEec
Q psy12559 43 VERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 87 (610)
Q Consensus 43 v~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNK 87 (610)
=...++.||++|.++| .....|-.=+-.|...|+|++++-+.
T Consensus 62 d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkPV~~l~~~ 103 (152)
T 4fyk_A 62 NLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRP 103 (152)
T ss_dssp HHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCCEEEEECG
T ss_pred HHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 4577899999999888 55677766677788899999987763
No 300
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=32.61 E-value=73 Score=28.40 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEE
Q psy12559 44 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF 84 (610)
Q Consensus 44 ~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~ 84 (610)
..+++.||++|.++|+ ...-+.|-.=+-.|...++|++++
T Consensus 76 ~~~i~~aD~vVA~ldg-~~~D~GTa~EiGyA~algKPVv~l 115 (167)
T 1s2d_A 76 LTGISNATCGVFLYDM-DQLDDGSAFXIGFMRAMHKPVILV 115 (167)
T ss_dssp HHHHHHCSEEEEEEES-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCEEEEECCC-CCCCCCceeehhhHhhCCCeEEEE
Confidence 3568999999999996 345666665566788899999887
No 301
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=32.33 E-value=52 Score=25.44 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEecccC
Q psy12559 40 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDR 90 (610)
Q Consensus 40 ~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiDr 90 (610)
..++..+++.-.+-++++...... .-...+-..|..+++|.+.+-+|.++
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 357888998888888888766554 33445567788999999988787653
No 302
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=32.23 E-value=1.4e+02 Score=29.96 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=50.7
Q ss_pred CCCCcCcHHHHHHHHhhcCEEEEEEecCCCcc-----------hhhHHHHHHHHh-----cCCCeE-EEEecccCCCCCH
Q psy12559 33 TPGHVDFTVEVERALRVLDGAILVLCAVGGVQ-----------SQTLTVNRQMKR-----YDVPCI-AFINKLDRLGADP 95 (610)
Q Consensus 33 TPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~-----------~qt~~v~~~~~~-----~~ip~i-~~iNKiDr~~~~~ 95 (610)
.|+ .+.+....++ ...|..|+|.++.-|-- .++....+.+.. .+++++ +++|..+......
T Consensus 239 ~P~-~~~t~~ll~g-~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~~ 316 (349)
T 2obn_A 239 HPG-STATLPLIRG-SQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYAA 316 (349)
T ss_dssp STT-CCTHHHHHHH-HCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHHH
T ss_pred CcC-hHhHHHHHHH-cCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHHH
Confidence 455 4444333333 24588999999876655 444444554443 678887 8899977665556
Q ss_pred HHHHHHHHHHhCCCee
Q psy12559 96 YRVINQMRQKVGHNAA 111 (610)
Q Consensus 96 ~~~~~~i~~~l~~~~~ 111 (610)
++.++.+++.++..+.
T Consensus 317 ~~~~~~ie~~~glPv~ 332 (349)
T 2obn_A 317 KEAIAHTIAETGLPCT 332 (349)
T ss_dssp HHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHHCCCEE
Confidence 7788899999886543
No 303
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=31.81 E-value=63 Score=28.67 Aligned_cols=43 Identities=7% Similarity=-0.075 Sum_probs=34.2
Q ss_pred HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 44 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 44 ~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
...++.||++|.++| .....|..=+-.|...++|++++-++-+
T Consensus 72 ~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l~~~~~ 114 (165)
T 2khz_A 72 LNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEEECTTT
T ss_pred HHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEEEcCCC
Confidence 477899999999887 5566676666778899999999877664
No 304
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.65 E-value=93 Score=24.87 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEE-EecccC
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAF-INKLDR 90 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~-iNKiDr 90 (610)
.++..+++.-.+-++++... ........+...|...++|.+.+ -+|.++
T Consensus 21 ~~v~kai~~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHHHHcCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 47888888777777766655 33344455667788999998776 777775
No 305
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=27.18 E-value=2.3e+02 Score=27.61 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=46.3
Q ss_pred CeeEEEecCCCCcCcHH----HH---HHHHh-----hcCEEEEEEecCCCcchhhHHHHHHHH-hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTV----EV---ERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~----ev---~~al~-----~~D~ailVvDa~~Gv~~qt~~v~~~~~-~~~ip~i~~iNKiDr~ 91 (610)
++...++||.|..++.. +. ..++. ..+-.++|+|+..|..+.+. .+... ..++ .+++++|+|-.
T Consensus 183 ~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiThlD~~ 259 (302)
T 3b9q_A 183 GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKLDGS 259 (302)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEECCSSC
T ss_pred CCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeCCCCC
Confidence 34567999999765432 21 11211 13566999998888766543 23333 3454 46789999965
Q ss_pred CCCHHHHHHHHHHHhCCC
Q psy12559 92 GADPYRVINQMRQKVGHN 109 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~ 109 (610)
+....++ ++...++..
T Consensus 260 -~~~g~~l-~~~~~~~~p 275 (302)
T 3b9q_A 260 -ARGGCVV-SVVEELGIP 275 (302)
T ss_dssp -SCTHHHH-HHHHHHCCC
T ss_pred -CccChhe-ehHHHHCCC
Confidence 4444444 344444543
No 306
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=26.71 E-value=81 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHHHHHc-CCccCCceeeeEEEEecCccc
Q psy12559 487 PKPFLPAIIKGFKQMCEK-GCLSGSRVAGVRMVLKDGDNH 525 (610)
Q Consensus 487 ~~~~~~av~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~h 525 (610)
|..+-+|+.+|+..|.+. --+.++.|.+.+..+.||+.-
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dgkv~ 54 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDSAGKI 54 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECTTCCE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCCcEE
Confidence 678999999999999875 347899999999999887753
No 307
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=25.67 E-value=83 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++..+++.-.+.++++........-...+...|..+++|.+.+-+|.+
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~e 95 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVA 95 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHH
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHH
Confidence 4678888877777777765544333346777888999999987766644
No 308
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=24.30 E-value=92 Score=26.66 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 40 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 40 ~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
..++..+++.-.+-+++|........-...+-..|.+.++|.+.+-+|.+
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e 86 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA 86 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHH
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 35788888888888888876654433455666888999999988866654
No 309
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=24.11 E-value=83 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHHHHHc-CCccCCceeeeEEEEecCcc
Q psy12559 486 VPKPFLPAIIKGFKQMCEK-GCLSGSRVAGVRMVLKDGDN 524 (610)
Q Consensus 486 ~~~~~~~av~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~ 524 (610)
=|..+.+|+.+|+..|.+. --+.++.|.+.+..+.||+.
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dgkv 53 (69)
T 2ux9_A 14 SEEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEAGV 53 (69)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCCcE
Confidence 3678999999999999875 34789999999999988875
No 310
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=23.72 E-value=84 Score=23.83 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHHHHHc-CCccCCceeeeEEEEecCcc
Q psy12559 486 VPKPFLPAIIKGFKQMCEK-GCLSGSRVAGVRMVLKDGDN 524 (610)
Q Consensus 486 ~~~~~~~av~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~ 524 (610)
=|..+.+||.+|+..|.+. --+.++.|.+.+..+.||+.
T Consensus 15 S~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~dgki 54 (72)
T 2vxa_A 15 SPNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEGGRV 54 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeCCcE
Confidence 3678999999999999875 34789999999999988875
No 311
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=23.46 E-value=85 Score=23.57 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=32.7
Q ss_pred CCcchHHHHHHHHHHHHHc-CCccCCceeeeEEEEecCcc
Q psy12559 486 VPKPFLPAIIKGFKQMCEK-GCLSGSRVAGVRMVLKDGDN 524 (610)
Q Consensus 486 ~~~~~~~av~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~ 524 (610)
=|..+.+|+.+|+..|.+. --+.++.|.+.+..+.||+.
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dgkv 53 (69)
T 2yiz_A 14 SPDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDGAV 53 (69)
T ss_dssp ETTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCCcE
Confidence 3678999999999999875 34789999999999988875
No 312
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.70 E-value=1.1e+02 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.4
Q ss_pred CcCHHHHHHHHHHHHhc----CCeeEEEEcCCCCcEEEEE
Q psy12559 368 NKDRDNFSKAVQRFTKE----DPTFHFFYDPESKETLVSG 403 (610)
Q Consensus 368 ~~d~~kL~~~L~~L~~e----Dpsl~~~~d~etge~il~g 403 (610)
....++|.+++++|++. .-.|+|.+|+++|++++.-
T Consensus 34 ~~~~eel~~av~~lN~~~~~~n~~L~F~vdee~~~~vVkV 73 (117)
T 2hc5_A 34 QVSYTNLAEMVGEMNKLLEPSQVHLKFELHDKLNEYYVKV 73 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCCEEEEEEEETTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCCcEEEEE
Confidence 44556677777666664 6789999999999998876
No 313
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=22.36 E-value=34 Score=33.41 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=12.7
Q ss_pred cceeecceeEEEecCeeEEEecCCCCcC
Q psy12559 11 GITIQSAATYTLWKDHNINIIDTPGHVD 38 (610)
Q Consensus 11 giTi~s~~~~~~~~~~~inlIDTPGh~d 38 (610)
|.|.....+.+ +..+.|+||||..+
T Consensus 153 g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 153 GITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp ------CCEEE---TTTEEEEECCCCCC
T ss_pred CeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 45554432222 45799999999754
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=22.16 E-value=1.5e+02 Score=29.88 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=45.6
Q ss_pred CeeEEEecCCCCcCcHHH----H---HHHHh-----hcCEEEEEEecCCCcchhhHHHHHHHH-hcCCCeEEEEecccCC
Q psy12559 25 DHNINIIDTPGHVDFTVE----V---ERALR-----VLDGAILVLCAVGGVQSQTLTVNRQMK-RYDVPCIAFINKLDRL 91 (610)
Q Consensus 25 ~~~inlIDTPGh~dF~~e----v---~~al~-----~~D~ailVvDa~~Gv~~qt~~v~~~~~-~~~ip~i~~iNKiDr~ 91 (610)
++...++||.|...+... . ..++. ..+-.++|+|+..|....+. .+... ..++ .+++++|+|-.
T Consensus 240 ~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~-t~iiiThlD~~ 316 (359)
T 2og2_A 240 GYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTKLDGS 316 (359)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEESCTTC
T ss_pred CCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCC-eEEEEecCccc
Confidence 345689999997654322 1 11111 13566999998888765443 23333 3344 46789999864
Q ss_pred CCCHHHHHHHHHHHhCCC
Q psy12559 92 GADPYRVINQMRQKVGHN 109 (610)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~ 109 (610)
+....++ .+...++..
T Consensus 317 -~~gG~~l-si~~~~~~p 332 (359)
T 2og2_A 317 -ARGGCVV-SVVEELGIP 332 (359)
T ss_dssp -SCTHHHH-HHHHHHCCC
T ss_pred -ccccHHH-HHHHHhCCC
Confidence 4444444 344445543
No 315
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=22.03 E-value=71 Score=26.72 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++..+++.-.+-++++........-...+...|...++|.+.+-+|.+
T Consensus 35 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~e 83 (120)
T 1xbi_A 35 NEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQD 83 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 4788888877777777765443332356777888999999877666654
No 316
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=21.96 E-value=71 Score=31.62 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred cCeeEEEecCCCCcCcHHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHh----cCCCeE-EEEecccCCCCCHHHH
Q psy12559 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKR----YDVPCI-AFINKLDRLGADPYRV 98 (610)
Q Consensus 24 ~~~~inlIDTPGh~dF~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~----~~ip~i-~~iNKiDr~~~~~~~~ 98 (610)
..+.+.++|+||-..... ...++..+|.+|+++.+.----.....+.+.++. .+.+.. +++|+.+.. ..
T Consensus 162 d~~D~v~iD~~~~~~~~~-~~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-----~~ 235 (314)
T 3fwy_A 162 DDTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-----DE 235 (314)
T ss_dssp SSCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-----HH
T ss_pred hcCceEeeccCCcchhhh-hHhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-----hH
Confidence 467899999997543221 1246888999999987542000011223333332 233433 667765432 33
Q ss_pred HHHHHHHhCCC
Q psy12559 99 INQMRQKVGHN 109 (610)
Q Consensus 99 ~~~i~~~l~~~ 109 (610)
++++.+.++..
T Consensus 236 v~~~a~~~~~~ 246 (314)
T 3fwy_A 236 VDRFCKETNFR 246 (314)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhCCe
Confidence 46666777654
No 317
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=21.89 E-value=1e+02 Score=27.13 Aligned_cols=43 Identities=7% Similarity=-0.181 Sum_probs=31.2
Q ss_pred HHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEec
Q psy12559 44 ERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINK 87 (610)
Q Consensus 44 ~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNK 87 (610)
..+++.||++|.++|+.+ .-+.|-.=+-.|...++|++++-.+
T Consensus 73 ~~~i~~aD~vvA~ldg~~-~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 73 LNGIKTNDIMLGVYIPDE-EDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp HHHHHTSSEEEEECCGGG-CCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred HHHHHhCCEEEEEcCCCC-CCccHHHHHHHHHHCCCeEEEEEcC
Confidence 466889999999999422 3455544455778899999888654
No 318
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=21.53 E-value=77 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++..+++.-.+.++++...... .....+...|...++|.+.+-+|.+
T Consensus 25 ~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~vp~~~~~s~~e 72 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVESRAV 72 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHTTCCEEEESCHHH
T ss_pred hhhHHHHhcCceeEEEEeccccc-cchhhhcccccccCCCeeeechHHH
Confidence 46888888777777666554433 3344555678889999998877765
No 319
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=21.36 E-value=82 Score=26.34 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 40 TVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 40 ~~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
..++..+++.--+-+++|........-...+-..|..+++|.+.+-+|.+
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~e 74 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQD 74 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 35788888887888888866544322355566788999999988777755
No 320
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=21.18 E-value=78 Score=26.39 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++..+++.-.+-++++........-...+...|...++|.+.+-+|.+
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~e 83 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDD 83 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 4688888876666666655433322356677788899999877766654
No 321
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=20.89 E-value=65 Score=32.18 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.7
Q ss_pred eeEEEeccccCCccHHHHHHHHHHhCC
Q psy12559 204 FTPVLVGTALKNKGVQTLLDAVLDYLP 230 (610)
Q Consensus 204 ~~Pv~~~Sa~~~~gv~~Lld~i~~~lP 230 (610)
..|++..||++|.|++.|++.|.++++
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999988765
No 322
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=20.44 E-value=81 Score=23.63 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=31.9
Q ss_pred CCcchHHHHHHHHHHHHHc-CCccCCceeeeEEEEecCcc
Q psy12559 486 VPKPFLPAIIKGFKQMCEK-GCLSGSRVAGVRMVLKDGDN 524 (610)
Q Consensus 486 ~~~~~~~av~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~ 524 (610)
=|..+-+|+.+|+..|.+. --+.++.|.+.+..+.||+.
T Consensus 12 S~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dgkv 51 (68)
T 2cc6_A 12 SEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAVEE 51 (68)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTTSSS
T ss_pred CCCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCCcE
Confidence 3678999999999999875 33688889999998888775
No 323
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=20.36 E-value=82 Score=26.43 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCEEEEEEecCCCcchhhHHHHHHHHhcCCCeEEEEeccc
Q psy12559 41 VEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLD 89 (610)
Q Consensus 41 ~ev~~al~~~D~ailVvDa~~Gv~~qt~~v~~~~~~~~ip~i~~iNKiD 89 (610)
.++..+++.-.+-++++........-...+...|...++|.+.+-+|.+
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~e 82 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKR 82 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4678888876666777655443322356677788899999877766654
Done!