RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12559
(610 letters)
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 239 bits (610), Expect = 3e-75
Identities = 114/231 (49%), Positives = 159/231 (68%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
MD ME ER+RGITI +A T WKDH INIID PGHVDFT+EVER++RVLDGAI+V +
Sbjct: 46 MDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSS 105
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GV+ Q+ TV RQ ++Y VP IAF NK+D+ GAD + VI M++++G +Q+PIG
Sbjct: 106 QGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGRE 165
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
GIID+++ KA + LG ++R IP + +A ++L+E A+ DE + +
Sbjct: 166 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKY 225
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 231
LE + +E+++ AIR+ T+ K TPV +G+ALKNKGVQ LLDAV+DYLP+
Sbjct: 226 LEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 276
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 162 bits (410), Expect = 2e-46
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 5/231 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
D + T+++ L++ H + ++D PG+ DF E+ AL D A++ + A
Sbjct: 42 TDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAE 101
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
GVQ T +R +P + + KLD+ Y + + + + +P+ G
Sbjct: 102 AGVQVGTERAWTVAERLGLPRMVVVTKLDK--GGDYYALLEDLRSTLGPILPIDLPLYEG 159
Query: 121 SETKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEMF 180
+ G+ID+ KA +E R E+P + ++ + RQE++E + E DE L E +
Sbjct: 160 GKWVGLIDVFHGKAYRYEN---GEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKY 216
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 231
LE + ++ + ++KA + PV + + + GV LL+ +L+ LP+
Sbjct: 217 LEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPS 267
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 116 bits (292), Expect = 3e-29
Identities = 65/280 (23%), Positives = 103/280 (36%), Gaps = 41/280 (14%)
Query: 1 MDSMELERQRGITIQSAATY----------------TLWKDHNINIIDTPGHVDFTVEVE 44
D+ + E++RGITI+S A T IN+ID+PGHVDF+ EV
Sbjct: 55 TDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVT 114
Query: 45 RALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQ 104
ALRV DGA++V+ + GV QT TV RQ + + INK+DR + + Q
Sbjct: 115 AALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQ 174
Query: 105 KVGHNAAFLQIPIGLGSETK--GIIDLIQRKAIYF-EGPLGDNLRIEEIPADLKKEAESK 161
+ + + ++ + R + F G G I + K+
Sbjct: 175 TFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVD 234
Query: 162 RQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTL 221
+ ++++ L S KK + T G L+ +
Sbjct: 235 KAKMMDR------------LWGDSFFNPKTKKWTNKDTDAE-------GKPLERAFNMFI 275
Query: 222 LDAVLDYLPNPGEVTNYAIENGQEDKKVVLNP---SRDGK 258
LD + I E ++VL +GK
Sbjct: 276 LDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGK 315
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 110 bits (275), Expect = 6e-28
Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 14/165 (8%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ++ ER+RGITI A + + +ID PGH DF + D AIL++
Sbjct: 59 LDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGG 118
Query: 61 GGVQSQTLTVNRQMKR-------YDVP-CIAFINKLDRLGADPYRV------INQMRQKV 106
G ++ + Q + V I +NK+D + D R + +KV
Sbjct: 119 VGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKV 178
Query: 107 GHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIP 151
G+N + G +I+ Y + +
Sbjct: 179 GYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGK 223
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 108 bits (271), Expect = 1e-27
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 11/162 (6%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ER RGITI +A + + +D PGH D+ + +DGAILV+ A
Sbjct: 42 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAA 101
Query: 61 GGVQSQTLTVNRQMKRYDVPCI-AFINKLDRLGADPY--RVINQMRQKVG-HNAAFLQIP 116
G QT ++ VP I F+NK+D + V ++R + + ++P
Sbjct: 102 DGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVP 161
Query: 117 IGLGSETKGIIDLIQR-KAIYFEGPLGDNLR------IEEIP 151
+ GS + + + K E D + E IP
Sbjct: 162 VIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 203
>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 104 bits (261), Expect = 3e-27
Identities = 43/110 (39%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 429 PKVAFKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPK 488
P+VA++ET+ +P D + +Q+GG GQYG V +EPLP + EF++ VG +PK
Sbjct: 1 PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPR--GSGFEFVNAIVGGVIPK 58
Query: 489 PFLPAIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
++PA+ KG ++ + G L G V +++ L DG H VDS+E++F +A
Sbjct: 59 EYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAG 108
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
thermophilus [TaxId: 274]}
Length = 75
Score = 95.2 bits (237), Expect = 1e-24
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 354 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 413
V +PV+ ++I+ D++ S+A+ R +E PTF PE+ T++SGMGEL LEI
Sbjct: 1 VPEPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIV 60
Query: 414 QRMEREYNCPVVLGK 428
R++RE+ +GK
Sbjct: 61 DRLKREFKVDANVGK 75
Score = 89.1 bits (221), Expect = 2e-22
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
+PV+ ++I+ D++ S+A+ R +E PTF PE+ T++SGMGEL LEI R
Sbjct: 3 EPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDR 62
Query: 600 MEREYNCPVVL 610
++RE+ +
Sbjct: 63 LKREFKVDANV 73
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 93.6 bits (232), Expect = 1e-22
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 5/156 (3%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D+ ER RGITI +A + D PGH D+ + LDG ILV+ A
Sbjct: 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAN 100
Query: 61 GGVQSQTLTVNRQMKRYDV-PCIAFINKLDRL--GADPYRVINQMRQKVG-HNAAFLQIP 116
G QT ++ V + ++NK D + V ++R+ + + P
Sbjct: 101 DGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160
Query: 117 IGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPA 152
I +GS + + L D + IP
Sbjct: 161 IIVGSALCALEQRDPELGLKSVQKLLDAV-DTYIPV 195
Score = 29.2 bits (65), Expect = 0.96
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 188 EDDIKKAIRRSTLTRKFTPVLVGTALKN----------KGVQTLLDAVLDYLPNP 232
E +I++ + + TP++VG+AL K VQ LLDAV Y+P P
Sbjct: 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain II
{Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 90.1 bits (223), Expect = 3e-22
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 245 EDKKVVLNPSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRV 303
E + V ++P +G P ALAFK+ A + G+LT++R Y G L G +YN +K RV
Sbjct: 13 EGEVVEIHPDPNG--PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERV 70
Query: 304 SRLVRLHSNEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLESI 352
+RL+R+H+N E+VEE+ AGD+ A+ G+ + +GDT V + + LESI
Sbjct: 71 ARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESI 120
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 91.0 bits (225), Expect = 2e-21
Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 18/168 (10%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ++ ER+RG+TI K + IID PGH DF + D AILV+ A
Sbjct: 56 LDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAK 115
Query: 61 GGVQSQTLTVNRQMKRYDV--------PCIAFINKLDRLGADP--------YRVINQMRQ 104
G ++V Q + + + I +NK+D +++ +
Sbjct: 116 KGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMR 175
Query: 105 KVGHNAAFLQIPIGLGSETKGIIDLIQRKAIYFEGPLGDNLRIEEIPA 152
G N ++ + I + Y GP + ++++
Sbjct: 176 SYGFNTNKVRFVPVVAPSGDNITHKSENMKWY-NGPTLEEY-LDQLEL 221
>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 115
Score = 84.7 bits (209), Expect = 2e-20
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 433 FKETLVQPFDFDYLHKKQSGGSGQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLP 492
++ET+ + + +KKQ+GG GQYG V L ++ F G +P +
Sbjct: 2 YRETIKKVAEGQGKYKKQTGGHGQYGDVW-----LRLEPASEYGFEWRITGGVIPSKYQE 56
Query: 493 AIIKGFKQMCEKGCLSGSRVAGVRMVLKDGDNHMVDSNEISFILAA 538
AI +G K+ +KG L+G V G + ++ +G H VDS++++F +AA
Sbjct: 57 AIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAA 102
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
thermophilus, EF-G-2 [TaxId: 274]}
Length = 77
Score = 78.0 bits (192), Expect = 2e-18
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 354 VADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYA 413
+ DP V +++ D +A+++ +EDP+ E+ E L+ G GELHL
Sbjct: 1 LPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAK 60
Query: 414 QRMEREYNCPVVLGKPKV 431
+R+ ++Y V PKV
Sbjct: 61 ERL-QDYGVEVEFSVPKV 77
Score = 68.8 bits (168), Expect = 3e-15
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 540 DPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQR 599
DP V +++ D +A+++ +EDP+ E+ E L+ G GELHL +R
Sbjct: 3 DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKER 62
Query: 600 MEREYNCPVVL 610
+ ++Y V
Sbjct: 63 L-QDYGVEVEF 72
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 79
Score = 74.9 bits (184), Expect = 2e-17
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 353 YVADPVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIY 412
+ PVV ++++ N D + ++R +K DP + ES E +V+G GELHLEI
Sbjct: 2 FSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEIC 60
Query: 413 AQRMEREY-NCPVVLGKP 429
Q +E ++ P+ + P
Sbjct: 61 LQDLEHDHAGVPLKISPP 78
Score = 67.6 bits (165), Expect = 8e-15
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 541 PVVSMSIKAVNNKDRDNFSKAVQRFTKEDPTFHFFYDPESKETLVSGMGELHLEIYAQRM 600
PVV ++++ N D + ++R +K DP + ES E +V+G GELHLEI Q +
Sbjct: 6 PVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDL 64
Query: 601 EREY 604
E ++
Sbjct: 65 EHDH 68
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 65.8 bits (160), Expect = 7e-14
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 253 PSRDGKHPFIALAFKLEAGKF-GQLTYMRCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHS 311
R G P +A FK++ F GQ+ Y+R Y+G+L+ G+ + + ++ L
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLP--HLYVPMG 59
Query: 312 NEMEDVEEVLAGDIFALFGV-DCASGDTFVTDKNNSISLE 350
++ +VEE AG + + G S E
Sbjct: 60 KDLLEVEEAEAGFVLGVPKAEGLHRGMVL-WQGEKPESEE 98
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 68.3 bits (166), Expect = 1e-13
Identities = 30/118 (25%), Positives = 46/118 (38%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+D ++ ER++GITI A Y I DTPGH +T + D AI+++ A
Sbjct: 64 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDAR 123
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 118
GVQ+QT + + I L RV ++ A +
Sbjct: 124 YGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPT 181
>d1n0ua3 d.14.1.1 (A:561-725) Elongation factor 2 (eEF-2), domain IV
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 60.5 bits (146), Expect = 2e-11
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 6/140 (4%)
Query: 395 ESKETLVSGMGELHLEIYAQRMEREYNCPVVLGKPKVAFKETLVQPFDFDYLHKKQSGGS 454
ES +T +S H IY + + + + + ++ DF + +
Sbjct: 10 ESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRD------DFKARARIMADDY 63
Query: 455 GQYGRVIGTLEPLPPSANTKLEFIDETVGTNVPKPFLPAIIKGFKQMCEKGCLSGSRVAG 514
G + P N ID+T +++ F+ ++G + G +
Sbjct: 64 GWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRS 123
Query: 515 VRMVLKDGDNHMVDSNEISF 534
VR+ + D H +
Sbjct: 124 VRVNILDVTLHADAIHRGGG 143
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 59.3 bits (143), Expect = 3e-11
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 18/137 (13%)
Query: 232 PGEVTNYAIEN----GQEDKKVVLNPSRDGKHPFIALAFKLEAGKFGQ--LTYMRCYQGK 285
P Y E +D + + D K + K+ + R + G
Sbjct: 2 PVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGT 61
Query: 286 LRKGEMIYNVRTDKKVR---------VSRLVRLHSNEMEDVEEVLAGDIFALFGVDCA-- 334
++ G+ + + + R+V + +E +++ AG+I L G+D
Sbjct: 62 VKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLL 121
Query: 335 SGDTFVTDKNNSISLES 351
T +T + +++
Sbjct: 122 KTGT-LTTSETAHNMKV 137
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 51.6 bits (122), Expect = 6e-08
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 11/187 (5%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
+ + + IDTPGH FT +R + D AIL++
Sbjct: 45 TEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDIN 104
Query: 61 GGVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLG 120
G + QT ++ Y P + NK+DR+ + +Q +
Sbjct: 105 EGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK 164
Query: 121 SE---TKGIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILG 177
K + + + + I I A + E EL+ + L
Sbjct: 165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISA-ITGE---GIPELLTMLMG----LA 216
Query: 178 EMFLEEK 184
+ +L E+
Sbjct: 217 QQYLREQ 223
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 48.1 bits (113), Expect = 1e-06
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 10 RGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDG-----AILVLCAVGGVQ 64
L K+++ +IDTPG ++ + E +R+++ + + +
Sbjct: 79 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKK 138
Query: 65 SQT-----LTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQ 114
R I +NK+D L + + + + + A L+
Sbjct: 139 PNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLK 193
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 40.3 bits (93), Expect = 3e-04
Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 4/135 (2%)
Query: 1 MDSMELERQRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV 60
E + I+ ID PGH + ++DGAILV+ A
Sbjct: 61 CKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAAN 120
Query: 61 GGVQSQTLTVNRQ--MKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIG 118
+ I NK+D + + + ++ +PI
Sbjct: 121 EPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPII 180
Query: 119 LGSETKG--IIDLIQ 131
S I LI+
Sbjct: 181 PVSALHKINIDSLIE 195
Score = 30.3 bits (67), Expect = 0.48
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 205 TPVLVGTALKNKGVQTLLDAVLDYLPNP 232
P++ +AL + +L++ + +Y+ P
Sbjct: 177 VPIIPVSALHKINIDSLIEGIEEYIKTP 204
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 35.5 bits (81), Expect = 0.015
Identities = 8/82 (9%), Positives = 20/82 (24%), Gaps = 3/82 (3%)
Query: 13 TIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALR---VLDGAILVLCAVGGVQSQTLT 69
Y N+ D PG + L + ++ + + +
Sbjct: 94 VTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDID 153
Query: 70 VNRQMKRYDVPCIAFINKLDRL 91
+ + + K+D
Sbjct: 154 IAKAISMMKKEFYFVRTKVDSD 175
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.8 bits (73), Expect = 0.064
Identities = 8/55 (14%), Positives = 25/55 (45%)
Query: 179 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPG 233
+ + K+ + + ++ ++ + F + +A N + T+L+ ++ L G
Sbjct: 113 ILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG 167
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 31.8 bits (71), Expect = 0.14
Identities = 15/63 (23%), Positives = 17/63 (26%)
Query: 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVNRQMKRYDVPCI 82
K + I DT G F R GA+LV LT R
Sbjct: 51 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN 110
Query: 83 AFI 85
I
Sbjct: 111 IVI 113
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 31.7 bits (71), Expect = 0.21
Identities = 14/96 (14%), Positives = 35/96 (36%)
Query: 12 ITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTVN 71
+ + + + ++DTPG + E E L + ++ +Q +
Sbjct: 143 RPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGL 202
Query: 72 RQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVG 107
R ++ + + LD + D + + + +K G
Sbjct: 203 RFLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRG 238
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 70
Score = 29.0 bits (65), Expect = 0.27
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 155 KKEAESKRQELIEHVAEGDEILGEMFLEE-KSISEDDIKKAIRRSTLTRKF 204
+E + Q L E+ GD +L E+ L++ + + + D+ KAI+ L K
Sbjct: 18 VEETDPLCQRLRENDIVGD-LLPELCLQDCQDLCDGDLNKAIKFKILINKM 67
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.5 bits (68), Expect = 0.29
Identities = 15/87 (17%), Positives = 21/87 (24%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTLTV 70
GI + K + I DT G F R G ILV +
Sbjct: 36 GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 95
Query: 71 NRQMKRYDVPCIAFINKLDRLGADPYR 97
+ A + + R
Sbjct: 96 WFKTVNEHANDEAQLLLVGNKSDMETR 122
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.1 bits (67), Expect = 0.42
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 4/96 (4%)
Query: 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG----VQSQTLTVNRQMKRYDV 79
K + I DT G F R G +LV + + DV
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 112
Query: 80 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 115
+ NK D + + + F++
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 148
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.5 bits (67), Expect = 0.42
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 187 SEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 230
+ ++A++ + +AL + V L +L +P
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 170
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.2 bits (67), Expect = 0.44
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 4/96 (4%)
Query: 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGG----VQSQTLTVNRQMKRYDV 79
+ + I DT G F + R + IL + L Q V
Sbjct: 52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 111
Query: 80 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 115
+ NK+D + +L+
Sbjct: 112 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 147
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 30.1 bits (66), Expect = 0.50
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 189 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNP 232
+ I K+I +ST K + ++ +A GV L + ++ L N
Sbjct: 133 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 176
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.1 bits (64), Expect = 1.1
Identities = 17/111 (15%), Positives = 26/111 (23%), Gaps = 4/111 (3%)
Query: 9 QRGITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAVGGVQSQTL 68
GI + Y K + I DT G + R G IL+ +
Sbjct: 37 TVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV 96
Query: 69 TVNRQMKRYDVPCIAFI----NKLDRLGADPYRVINQMRQKVGHNAAFLQI 115
+ A + NK D + F +
Sbjct: 97 QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 147
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.1 bits (64), Expect = 1.1
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 179 MFLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPNPGEVTNY 238
+ + K + + PV +A+ +G++ LL V + L N E Y
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLY 180
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 28.8 bits (63), Expect = 1.3
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 205 TPVLVGTALKNKGVQTLLDAVLDYLP 230
P++ +AL + L+ A+ D++P
Sbjct: 169 APIIPISALHGANIDVLVKAIEDFIP 194
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 28.5 bits (62), Expect = 1.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 203 KFTPVLVGTALKNKGVQTLLDAVLDYLP 230
F ++ +A V T+ V +LP
Sbjct: 144 NFLDIVPISAETGLNVDTIAAIVRKHLP 171
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 26.7 bits (59), Expect = 2.4
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 280 RCYQGKLRKGEMIYNVRTDKKVRVSRLVRLHSNEMEDVEEVLAGDI--FALFGV--DCAS 335
+ G ++K + + ++ + V ++ E++ + GD + G D +
Sbjct: 28 KIEAGSIKKNSNVLVMPINQTLEV---TAIYDEADEEISSSICGDQVRLRVRGDDSDVQT 84
Query: 336 GDTFVTDKN 344
G + KN
Sbjct: 85 GYVLTSTKN 93
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.2 bits (61), Expect = 2.6
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 189 DDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYL 229
D K +R++ +++ ++ KG A+ +
Sbjct: 153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 27.8 bits (61), Expect = 3.2
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 143 DNLRIEEIPADLKKEAESKRQELIEHVAEGD-------EILGEMFLE--EKSISEDDIKK 193
D +R+E +P K KR + + + + + + F++ ++ + D++
Sbjct: 9 DLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDMET 68
Query: 194 AIRRSTLTRKFTPVLVGT---ALKNKGVQTLLDAVLDYLP 230
+ AL G TL + Y
Sbjct: 69 IFVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKE 108
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.7 bits (60), Expect = 3.3
Identities = 2/50 (4%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 181 LEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLP 230
++ + + + + + +A ++ L + + + +
Sbjct: 134 IKNVQEVINFLAEKFEVPLSEIDKVFIPI-SAKFGDNIERLKNRIFEVIR 182
Score = 27.0 bits (58), Expect = 6.0
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 62 GVQSQTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGS 121
G + + ++ D+P I +NKLD++ + VIN + +K + + S
Sbjct: 105 GEIPIDVEFYQFLRELDIPTIVAVNKLDKI-KNVQEVINFLAEKFEVPLSEIDKVFIPIS 163
Query: 122 ETK--GIIDLIQR 132
I L R
Sbjct: 164 AKFGDNIERLKNR 176
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.5 bits (60), Expect = 3.9
Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 4/127 (3%)
Query: 11 GITIQSAATYTLWKDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV----GGVQSQ 66
G+ + K + I DT G F R G I+V
Sbjct: 40 GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 99
Query: 67 TLTVNRQMKRYDVPCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQIPIGLGSETKGI 126
L + V + NK D + FL+ + +
Sbjct: 100 WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 159
Query: 127 IDLIQRK 133
+ R+
Sbjct: 160 FLTMARQ 166
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 4.2
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 24 KDHNINIIDTPGHVDFTVEVERALRVLDGAILVLCAV----GGVQSQTLTVNRQMKRYDV 79
K I DT G + R GA+LV + L R ++
Sbjct: 51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 110
Query: 80 PCIAFINKLDRLGADPYRVINQMRQKVGHNAAFLQI 115
+ NK D +N +F++
Sbjct: 111 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIET 146
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 99
Score = 25.6 bits (56), Expect = 6.2
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 153 DLKKEAESKRQELIEHVAEGDEILGEMFLEEKSISEDDIKKAIRR-STLTRKFTPVLVGT 211
++ ++ ++ A+GD I + +E + DI + + L + + +LVG+
Sbjct: 23 EVLNAISARITQMGGFFAKGDRIS--LMIENHNKHSQDIPRIVSHLRNLGLEVSQILVGS 80
Query: 212 ALKNK 216
++ K
Sbjct: 81 TVEGK 85
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 27.0 bits (58), Expect = 6.3
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 180 FLEEKSISEDDIKKAIRRSTLTRKFTPVLVGTALKNKGVQTLLDAVLDYLPN 231
+ + D+ K R ++P++ +A K + ++DA+ +
Sbjct: 132 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 7.1
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 5/115 (4%)
Query: 66 QTLTVNRQMKRYDVPCIAFINKLDRLGADPYRVI-NQMRQKVGHNAAFLQIPIGLGSETK 124
+ ++ + + NK D A ++I Q+ +++ +
Sbjct: 96 YQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 155
Query: 125 GIIDLIQRKAIYFEGPLGDNLRIEEIPADLKKEAESKRQELIEHVAEGDEILGEM 179
+ +K FE L++E + K I+ + ++ L ++
Sbjct: 156 TAPAQLGKKGKEFEFSQLP-LKVEFLECSAKGGRGDTGSADIQDL---EKWLAKI 206
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.3 bits (57), Expect = 9.1
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 23 WKDHNINIIDTPGHVDFTVEVERALRVLDGAILV 56
+ I DT G F R G ILV
Sbjct: 53 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,293,262
Number of extensions: 111414
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 55
Length of query: 610
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 519
Effective length of database: 1,158,166
Effective search space: 601088154
Effective search space used: 601088154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)