BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12560
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 1/167 (0%)
Query: 108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFC 167
+C C K+F HL H+ +H PY+C C K F +K L RH + H+ K + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKC 80
Query: 168 KVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
C K+ +L+ H + H G K Y C C KSF + L HQ TH+ +K + C CG
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR 274
KSF R+ +L H RTH K ++C C K F + H R H +
Sbjct: 141 KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
PY C C K F L H + H+ K + C C K+ + L +H + H G K Y
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC 254
C C KSF ++ +L HQ TH+ +K + C CGKSF + L H RTH K ++C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 255 DKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
K F N+ H R H ++C +C KSF+R+D L H ++
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+ C C K+ + L +H + H G K Y C C KSF +K DL +HQ TH+ +K + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHK 284
CGKSF ++ +L H RTH K + C C K F L ++R H R H ++C +C K
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 285 SFTRKDNLERHVKSIHLEDP 304
SF+R+DNL H ++ E P
Sbjct: 142 SFSREDNLHTHQRTHTGEKP 161
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 72 VIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQ 131
+ PGE Y C +C + F + H + + C C K+F +K L H+ +H
Sbjct: 15 LEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 132 DLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY+C C K F + L H + H+ K + C C K+ + L+ H + H G K
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
Y C C KSF +++L HQ TH+ +K + C CGKSF R+ L +H RTH
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%)
Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFP 245
+ G K Y C C KSF + L +HQ TH+ +K + C CGKSF K DL H RTH
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 246 LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
K ++C C K F N+R H R H + C +C KSF++ +L H ++ E P
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
YKC +C + F K + H + + C C K+F +++L H+ +H PY C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE 199
C K F L H + H+ K + C C K+ ++L H + H G K Y C C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 200 KSFIEKNDLIKHQVTHSDKKI 220
KSF ++ L HQ TH+ KK
Sbjct: 169 KSFSRRDALNVHQRTHTGKKT 189
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+ C C K+ +L+KH + H G K Y C C KSF + +DL KHQ TH+ +K + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 225 NCGKSFKRKYDLALHIRTH 243
CGKSF R L+ H RTH
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
K Y C C KSF + ++L KHQ TH+ +K + C CGKSF + DL H RTH K ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 251 CKLCDKIFFTLHNMRRHMRIHKDR 274
C C K F ++ RH R H+++
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNK 86
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE 278
K + C CGKSF + +L H RTH K ++C C K F ++++H R H ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 279 CHDCHKSFTRKDNLERHVKS 298
C +C KSF+R D+L RH ++
Sbjct: 63 CPECGKSFSRSDHLSRHQRT 82
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
PY+C C K F L +H + H+ K + C C K+ L+KH + H G K Y
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKK 219
C C KSF + L +HQ TH +KK
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
YKC +C + F N + H + + C C K+F S L H+ +H PY+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 140 NCHKGFKNKGKLNRHMKIHSDSK 162
C K F L+RH + H + K
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
K ++C C K F N+++H R H ++C +C KSF++ +L++H ++ E P
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
CNK + L+ H + H G K Y CD CE+ F + L +HQ H+ K F C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
+ F R L H RTH K F C+ C K F + RH +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVC 170
C+K + SHL H H PY+C +C + F +L RH + H+ K + CK C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTC 72
Query: 171 NKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
+ + LK H + H G K + C C+K F ++L++H H
Sbjct: 73 QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCD 255
C K + + + L H H+ +K + C+ +C + F R L H R H +K FQCK C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 256 KIFFTLHNMRRHMRIHKDRPLFECH--DCHKSFTRKDNLERH 295
+ F +++ H R H F C C K F R D L RH
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 216 SDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHMRIH 271
S+K+ F+C C K + + L +H R H K +QC K C++ F ++RH R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
F+C C + F+R D+L+ H ++ E P
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 110 CDI--CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKE---Q 164
CD C++ F L H+ H + P++C C + F L H + H+ K +
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 165 WFCKVCNKALMSVESLKKHMKIH 187
W C K + L +H +H
Sbjct: 99 W--PSCQKKFARSDELVRHHNMH 119
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS--NCH 142
C+R+F K H + C C + F HL H +H P+ C +C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQ 103
Query: 143 KGFKNKGKLNRHMKIH 158
K F +L RH +H
Sbjct: 104 KKFARSDELVRHHNMH 119
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP 275
S K++ C+ CGKSF K H+ H L+ + C +C K F H++ HM+IH
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 276 LFECHDCHKSFTRKDNLERHV----KSIHLEDPSENTNTING 313
+EC+ C K F +D+ RHV KS +NT +G
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
Y C C K F +K + +RHM +H + + C VC K L HMKIH G+K Y C
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 196 DICEKSFIEKNDLIKHQVT 214
+IC K F+ ++ +H +
Sbjct: 69 NICAKRFMWRDSFHRHVTS 87
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
C K+F +KS D H H L PY C C K FK K L HMKIH+ K + C +C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAK 73
Query: 173 ALMSVESLKKHM 184
M +S +H+
Sbjct: 74 RFMWRDSFHRHV 85
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
+G K Y C C KSF K+ +H H + + C CGK FK K+ L H++ H +K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 248 RFQCKLCDKIFFTLHNMRRHM 268
++C +C K F + RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C K+ +HM +H GL+ Y C +C K F K+ L+ H H+ K + C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 230 FKRKYDLALHIRT 242
F + H+ +
Sbjct: 75 FMWRDSFHRHVTS 87
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM 155
C +C K F K HL H H + PYEC+ C K F + +RH+
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 156 KIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
++ S +K+++ CK C + +L H + H + Y CDIC K+F ++ L H+ H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K F C+ CGK F + LA+H H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLF 277
KK F+C+ CG+ F + Y+L +H RTH + + C +C K F ++R H IH F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 278 ECHDCHKSFTRKDNLERHVKSIHLEDPS 305
+C +C K F + L H K++H++ S
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLHMQTSS 101
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
K + C C + F +L H+ +H D PY C CHK F+ + L H IH SKE+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH--SKEK 72
Query: 165 WF-CKVCNKALMSVESLKKHMKIH 187
F C+ C K +L H +H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
K + C C + F + +L+ H+ TH+D++ + C+ C K+F+R+ L H H K F+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
C+ C K F + H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%)
Query: 82 CLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNC 141
C C R F YN H + + +CDIC K F + HL H+ H P++C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 142 HKGFKNKGKLNRHMKIH 158
KGF L H +H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
CK+C K+ +L H+ IH+ + Y C C K F +K+D+ KH H+ +K C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 227 GKSFKRKYDLALHIRTH 243
GK+F + +L H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
++C C K FK L+ H+ IHSD++ + C+ C K +KKH IH G K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 196 DICEKSFIEKNDLIKHQVTHSD 217
+C K+F + ++LI H H+
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFC 167
C IC K+F S L H L H D PY C C K F K + +H IH+ K C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK-C 60
Query: 168 KVCNKALMSVESLKKHMKIHAG 189
+VC KA +L H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
++ C IC KSF + L H + HSD + + C+ CGK F +K D+ H H K +C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 252 KLCDKIFFTLHNMRRHMRIH 271
++C K F N+ H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH 280
F C+ CGKSFKR L+ H+ H + + C+ C K F +M++H IH +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 281 DCHKSFTRKDNLERHVK 297
C K+F++ NL H +
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 30/81 (37%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
+ C C + FK H+ S C C K F KS + H H P++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 140 NCHKGFKNKGKLNRHMKIHSD 160
C K F L H + H+
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
+S + ++C+IC K F + HL+ HKLSH PY C C FK K +++ H++ H S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 162 -KEQWFCKVCNKALMSVESLKKHMK-IHAG 189
+ + C+ C K + L H+K +H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 27/120 (22%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
+G C+IC K F + L +H+++HS +K + C CG FKRK ++ H+R+H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH---- 58
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
D +P + C C K F+R D+L H+K +H PS
Sbjct: 59 -------DGSV--------------GKP-YICQSCGKGFSRPDHLNGHIKQVH-SGPSSG 95
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH--S 216
S C++C K V L +H H+G K Y C +C F K+ + H +H S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 217 DKKIFVCENCGKSFKRKYDLALHIR 241
K ++C++CGK F R L HI+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 82 CLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQD--LNPYECS 139
C C + F+ Y+ H S + SC +C F K + YH SH PY C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 140 NCHKGFKNKGKLNRHMK-IHSD 160
+C KGF LN H+K +HS
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 80 YKCLKCKRQFKVKYNCKYHI--HCTSLKAKLSCDICDKTFVNKSHLDYH 126
Y C C +FK K YH+ H S+ C C K F HL+ H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
Y C + C++ F +K +L H H+ +K F C C ++F ++ L HIRTH K F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
C +C + F TLH RH +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F K++LD H H P++C C + F + LN H++ H+ K + C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
++ + +H KIH K+
Sbjct: 71 KFATLHTRTRHTKIHLRQKD 90
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 135 PYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
PY C +C + F K L+ H++IH+ K + C++C + SL H++ H G K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F + +H H +K
Sbjct: 63 FACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ +L H++IH G K + C IC ++F ++ L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F + H + H K
Sbjct: 72 FATLHTRTRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F +K +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
+ F RH K IHL
Sbjct: 70 RKFATLHTRTRHTK-IHLR 87
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F K N HI + + C IC + F ++ L+ H +H P+ C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F RH KIH K+
Sbjct: 72 FATLHTRTRHTKIHLRQKD 90
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F N+ H+RIH + F+C C ++F+++ +L H+++ E P
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 53 IEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDI 112
+E+ + +K + +I++ G+ ++C C R F + + HI + + +CDI
Sbjct: 9 VESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTHTGEKPFACDI 67
Query: 113 CDKTFVN 119
C + F
Sbjct: 68 CGRKFAT 74
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 139 SNCHKGFKNKGKLNRHMKIHSDSKEQWFCK--VCNKALMSVESLKKHMKIHAGLKNYHCD 196
++C + KL H+ H+ K + CK C K S+ L +H H G KN+ CD
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
Query: 197 I--CEKSFIEKNDLIKHQVTHSDKKI--FVC--ENCGKSFKRKYDLALHIRTHFPLKRFQ 250
C+ F K ++ KH + KI +VC ENCGK+FK+ L +H +H ++
Sbjct: 77 SDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYE 136
Query: 251 C--KLCDKIFFTLHNMRRHMRIHKDRP 275
C + CDK F ++RH ++H P
Sbjct: 137 CPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDR 274
K ++C +CG ++ + + L H+ H K F CK C+K F +LH++ RH H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 275 PLFECHD--CHKSFTRKDNLERHVKSIH 300
F C C FT K N+++H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYEC--SNCHKGFKNKGKLNRHMKIHS 159
C K F + L H+ SH PYEC C K F +L RH K+H+
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSN--CHKGFKNKGKLNRHM-KIHSDSKEQWFCKV 169
C+K F + HL H L+H + C + C F K + +H + H+ + C
Sbjct: 50 CEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF 109
Query: 170 --CNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSD---KKIFV 222
C KA LK H H Y C + C+K F + L +H+ H+ KK
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
Query: 223 CENCGKSF 230
C GK++
Sbjct: 170 CSFVGKTW 177
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDK 218
S S C+VC K + LK HM+ H G+K Y C C+ + + + L KH HSD+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
+ F C+ C + + L +H+R+H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 223 CENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC 282
CE CGK F RK L H+R H +K ++CK CD ++ +H+RIH D F+C C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 283 HKSFTRKDNLERHVKSIHLEDPSENTN 309
+ L H++S H D ++
Sbjct: 71 PYASRNSSQLTVHLRS-HTGDSGPSSG 96
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKV 169
C++C K F K L H H + PY+C C + LN+H++IHSD + + C++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQI 69
Query: 170 CNKALMSVESLKKHMKIHAG 189
C A + L H++ H G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 134 NPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY 193
P++C C K F K KL HM+ H+ K + CK C+ A SL KH++IH+ + +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 194 HCDICEKSFIEKNDLIKHQVTHS 216
C IC + + L H +H+
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHT 88
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC 254
C++C K F K+ L H H+ K + C+ C + L H+R H + F+C++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 255 DKIFFTLHNMRRHMRIH 271
+ H+R H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 75 GEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
G +KC C + F K K H+ C + C CD + S L+ H H D
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
P++C C +N +L H++ H+
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHT 88
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 250 QCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED 303
+C++C K F ++ HMR H ++C C + +L +H++ IH ++
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE 62
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRH--MKIHS 159
+S + + C C K F++K +L H H P+EC C K + K L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 160 DSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQV 213
S++ + C VC + L+ HM H G Y C C + F++K DL H +
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR---THF 244
+G C C K F+ K L H H+ +K F C CGK + RK +L H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 245 PLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ F C +C + F +R HM H ++C C + F +K +L+ H+ +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIHSD 160
+C +C +TF + L H +SH PY+CS+C + F K L HM K+HS
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 81 KCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLS---HQDLNPYE 137
+C C ++F KY K H + + C C K + K +L H+ ++ +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 138 CSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHM-KIHAG 189
CS C + F+ + +L HM H+ + + C C++ M + L+ HM K+H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTG-EMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 146 KNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEK 205
+ K K + H ++ D + + C VC ++ + + SL++H IH+ K Y C CEK F
Sbjct: 4 RMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLA 63
Query: 206 NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
KH++ H+ ++ + C CGKSF ++ HI++
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECH 280
++C C +S+ L H H K++ C+ C+K+F +H H ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 281 DCHKSFTRKDNLERHVKSIHLEDPSENTNTINGH 314
C KSF + H+KS+H +DPS ++ H
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLH 116
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 58 SDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTF 117
++K K D+ ++I V Y C+ CKR + + + H + S + K C C+K F
Sbjct: 1 ANKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Query: 118 VNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMK-IHS 159
+ H++ H Y+C C K F N ++ H+K +HS
Sbjct: 61 PLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 122 HLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLK 181
H D+++L Y C C + + L RH IHS K ++ C+ C K E
Sbjct: 9 HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEK-KYPCRYCEKVFPLAEYRT 67
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKH 211
KH H G + Y C C KSFI + H
Sbjct: 68 KHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKV 169
C +C +++V + L H H Y C C K F +H +IH + ++ C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLA 83
Query: 170 CNKALMSVESLKKHMK 185
C K+ ++ + + H+K
Sbjct: 84 CGKSFINYQFMSSHIK 99
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ SL +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F R + H + H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F G L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F + L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F + L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHLR 87
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F + HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F + RH KIH K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F ++ RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
Y C + C++ F +K +L H H+ +K F C C ++F + L HIRTH K F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
C +C + F TLH RH +IH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F K++LD H H P++C C + F LN+H++ H+ K + C +C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
++ + +H KIH K+
Sbjct: 71 KFATLHTRDRHTKIHLRQKD 90
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ +L H++IH G K + C IC ++F + L +H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F + H + H K
Sbjct: 72 FATLHTRDRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 135 PYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
PY C +C + F K L+ H++IH+ K + C++C + L +H++ H G K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F + +H H +K
Sbjct: 63 FACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F +K +L HIR H K FQC++C + F + +H+R H F C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
+ F +RH K IHL
Sbjct: 70 RKFATLHTRDRHTK-IHLR 87
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F K N HI + + C IC + F + L+ H +H P+ C C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F +RH KIH K+
Sbjct: 72 FATLHTRDRHTKIHLRQKD 90
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F N+ H+RIH + F+C C ++F++ L +H+++ E P
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 53 IEAPESDKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDI 112
+E+ + +K + +I++ G+ ++C C R F HI + + +CDI
Sbjct: 9 VESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDI 67
Query: 113 CDKTFVNKSHLDYHKLSH 130
C + F D H H
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ + L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 230 FKRKYDLALHIRTHF 244
F R + H + H
Sbjct: 71 FARSDERKRHTKIHL 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F +L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 192 NYHCDICEKSFIEKNDLIKHQVTH 215
+ CDIC + F ++ +H H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F R +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 284 KSFTRKDNLERHVKSIHL 301
+ F R D +RH K IHL
Sbjct: 69 RKFARSDERKRHTK-IHL 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F ++L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 69
Query: 173 ALMSVESLKKHMKIH 187
+ K+H KIH
Sbjct: 70 KFARSDERKRHTKIH 84
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F HI + + C IC + F HL H +H P+ C C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 145 FKNKGKLNRHMKIH 158
F + RH KIH
Sbjct: 71 FARSDERKRHTKIH 84
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F + RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ + L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F R + H + H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F R +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHL 86
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F +L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F ++L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F + RH KIH K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F + RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ +L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F R + H + H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 135 PYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
PY C +C + F + L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQ 250
Y C + C++ F + ++L +H H+ +K F C C ++F R L HIRTH K F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 251 CKLCDKIFFTLHNMRRHMRIH 271
C +C + F +RH +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHLR 87
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F + S+L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F N HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F + RH KIH K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F N+ RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ + L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHF 244
F R + H + H
Sbjct: 72 FARSDERKRHTKIHL 86
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F +L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTH 215
+ CDIC + F ++ +H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F R +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHL 86
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F ++L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIH 187
+ K+H KIH
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 30/74 (40%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIH 158
F + RH KIH
Sbjct: 72 FARSDERKRHTKIH 85
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F + RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
C K LK H++ H G K YHCD C F ++L +H H+ + F C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 228 KSFKRKYDLALHIRTHF 244
++F R LALH++ HF
Sbjct: 74 RAFSRSDHLALHMKRHF 90
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
CGK++ + L H+RTH K + C C F + RH R H F+C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 284 KSFTRKDNLERHVK 297
++F+R D+L H+K
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCD 255
C K++ + + L H TH+ +K + C+ CG F R +L H R H + FQC+ CD
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 256 KIFFTLHNMRRHMRIH 271
+ F ++ HM+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 103 SLKAKLSCDI--CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIH 158
S A +CD C KT+ SHL H +H PY C C F +L RH + H
Sbjct: 2 SRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 61
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIH 187
+ + + C+ C++A + L HMK H
Sbjct: 62 TGHRP-FQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDI--CDKTFVNKSHLDYHKLSHQDLNPYECSNCH 142
C + + + K H+ + + CD C F L H H P++C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 143 KGFKNKGKLNRHMKIH 158
+ F L HMK H
Sbjct: 74 RAFSRSDHLALHMKRH 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F R DL HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHLE 302
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHLR 87
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F R + H + H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F DL +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F + L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F + HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F + RH KIH K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F ++ RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ L +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTHFPLK 247
F R + H + H K
Sbjct: 72 FARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 134 NPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY C +C + F +L RH++IH+ K + C++C + + L H++ H G K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F R +L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIHL 301
+ F R D +RH K IHL
Sbjct: 70 RKFARSDERKRHTK-IHL 86
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F +L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F + L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C R+F HI + + C IC + F HL H +H P+ C C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 145 FKNKGKLNRHMKIHSDSKE 163
F + RH KIH K+
Sbjct: 72 FARSDERKRHTKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
CD+ F + RH+RIH + F+C C ++F+R D+L H+++ E P
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
C K LK H++ H G K YHCD C F ++L +H H+ + F C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 228 KSFKRKYDLALHIRTHF 244
++F R LALH++ HF
Sbjct: 73 RAFSRSDHLALHMKRHF 89
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
CGK++ + L H+RTH K + C C F + RH R H F+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 284 KSFTRKDNLERHVK 297
++F+R D+L H+K
Sbjct: 73 RAFSRSDHLALHMK 86
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKLCD 255
C K++ + + L H TH+ +K + C+ CG F R +L H R H + FQC+ CD
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 256 KIFFTLHNMRRHMRIH 271
+ F ++ HM+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 106 AKLSCDI--CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDS 161
A +CD C KT+ SHL H +H PY C C F +L RH + H+
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 162 KEQWFCKVCNKALMSVESLKKHMKIH 187
+ + C+ C++A + L HMK H
Sbjct: 64 RP-FQCQKCDRAFSRSDHLALHMKRH 88
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDI--CDKTFVNKSHLDYHKLSHQDLNPYECSNCH 142
C + + + K H+ + + CD C F L H H P++C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 143 KGFKNKGKLNRHMKIH 158
+ F L HMK H
Sbjct: 73 RAFSRSDHLALHMKRH 88
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CD 255
C K F + + + KH TH + + VC CGK+F L H H K FQC C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 256 KIFFTLHNMRRHMRIHK-DRPLFECHD-CHKSFTRKDNLERHV 296
K F N+R H+RIH DRP D C+K F + NL+ H+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDI-- 197
C K F++ + +H+ H+ C C KA + LK+H +H G K + C
Sbjct: 12 GCTKMFRDNSAMRKHL--HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQ 250
C K F +L H H+ + +VC + C K F + +L HI TH K Q
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 85 CKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS--NCH 142
C + F+ + H+H + + C C K FV S L H+L H P++C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 143 KGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKIHAGLKN 192
K F L H++IH+ + + C CNK +LK H+ HA KN
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 252 KLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
K C K+F MR+H+ H R + C +C K+F L+RH
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPR-VHVCAECGKAFVESSKLKRH 53
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
C K LK H++ H G K Y C + C+ F ++L +H H+ K F C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 228 KSFKRKYDLALHIRTH 243
+SF R LALH++ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 218 KKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHKD 273
++I C+ C K + + L H+RTH K ++C CD F + RH R H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 274 RPLFECHDCHKSFTRKDNLERHVK 297
F+C C++SF+R D+L H+K
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMK 96
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKR 248
++CD C K + + + L H TH+ +K + C E C F R +L H R H K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKD 273
FQC +C++ F ++ HM+ H++
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 29/110 (26%)
Query: 110 CDI--CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFC 167
CD C K + SHL H +H PY+C+ W
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCT-------------------------W-- 50
Query: 168 KVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSD 217
+ C+ + L +H + H G K + C +C +SF + L H H +
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 107 KLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSD 160
K + + CD F L H H P++C C++ F L HMK H +
Sbjct: 47 KCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 198 CEKSFIEKNDLIKH----QVTHSDKKIFVC--ENC---GKSFKRKYDLALHIRTHFPLKR 248
C+++F ++L+ H V ++ VC E C GKSFK KY L HIR H K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 249 FQCKL--CDKIFFTLHNMRRHMRIHKDRPLFEC--HDCHKSFTRKDNLERHVKSIHLEDP 304
F C C KIF N++ H R H F+C C + F + ++H+ +H D
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH-VHTSDK 149
Query: 305 S 305
S
Sbjct: 150 S 150
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 14/120 (11%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPY---------ECSNCHKGFKNKGKLNRHMKIHSDSKE 163
CD+TF L H P EC K FK K KL H+++H+ K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK- 89
Query: 164 QWFCKV--CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKK 219
+ C C K E+LK H + H G K + C+ C++ F +D KH H+ K
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 29/114 (25%)
Query: 81 KCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDI--CDKTFVNKSHLDYHKLSHQDLNPYEC 138
+C + + FK KY HI + + C C K F +L HK +H P++C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 139 SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
F+ C++ + KKHM +H K+
Sbjct: 124 E-----FEG----------------------CDRRFANSSDRKKHMHVHTSDKS 150
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 111 DICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG--------FKNKGKLNRHMKIHSDSK 162
D C + F ++ L +H S + CH G FK + L HM+ H+ K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 163 -EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQ-VTHSDK 218
+ + C K+ +E+LK H++ H G K Y C + C K+F +D KHQ THS++
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRT 242
K +VC+ C K + L H++T
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 170 CNKALMSVESLKKHMK---IHAGLKNY--HCDICEKS---FIEKNDLIKHQVTHSDKKIF 221
C++ S E L H+ IH K + H C + F + L+ H H+ +K
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 222 VC--ENCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHM-RIHKDRPL 276
C E C KS+ R +L H+R+H K + C + C K F + +H R H +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 277 FECH--DCHKSFTRKDNLERHVKSIH 300
+ C C K +T +L +HVK++H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 82 CLKCKRQFKVKYNCKYHI--HCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYEC- 138
C + R FK +Y H+ H K + + C K++ +L H SH PY C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 139 -SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKIHAG 189
C K F N +H +++ + CK+ C K SL+KH+K G
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 34/117 (29%)
Query: 196 DICEKSFIEKNDLIKH---QVTHSDKKIFVCENCG-----KSFKRKYDLALHIRTHFPLK 247
D C + F + L+ H + H ++K FVC G + FK +Y L +H+R H K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
+C FE C KS++R +NL+ H++S E P
Sbjct: 67 PHKC------------------------TFE--GCRKSYSRLENLKTHLRSHTGEKP 97
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ Y CD C KSF +DL KH+ TH+ +K + C+ CGK+F ++ L H R H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 162 KEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+ ++ C C K+ L KH + H G K Y CD C K+FI+++ LI H H+
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 217 DKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+++ + C+ CGKSF DL+ H RTH K ++C C K F ++ H R+H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
+ + CD C K+F + S L H+ +H PY+C C K F + L H ++H+ S
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAG 189
Y+C C K F + L++H + H+ K + C C KA + L H ++H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 76 EPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
E YKC +C + F + H + + CD C K F+ +SHL H H P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
+R++C C K F ++ +H R H ++C +C K+F ++ +L H + PS
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Query: 307 N 307
Sbjct: 77 G 77
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
K Y CD C+ SF K +L H+ H+ +K + C CG F R +L H R H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
PY+C C F+ KG L H +H+ K + C +C +LK H +IH+G K
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
CD C +F K +L HK H PY C+ C F L H +IHS K
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
K + C+ C SF+ K +LA H H K ++C +C F N++ H RIH
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ C C + +L H +H G K Y C+IC F +L H HS +K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
K ++C C F N+ H +H + C+ C F R NL+ H + E P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
YKC +C+ F+ K N H + + C+IC F ++L H H P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSD 160
C+ C KT+ + S L H+ +H P C C K F+++ ++NRH+K+H +
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 217 DKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP 275
++ F C CGK+++ L+ H R H + C C K F + RH+++H+++P
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 161 SKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDK 218
S+ +FC C K L +H + H G + C C K F +++++ +H H +K
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + C+ C K++ + + L +H+ H + C CGK F+ + ++ H++ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
P+ C+ C K +++ L+RH + H + + C C K + +H+K+H
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRS-CPECGKCFRDQSEVNRHLKVH 55
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPS 305
F C C K + + RH R H C +C K F + + RH+K +H P+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNKPA 60
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 219 KIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDR 274
K ++C +CG ++ + + L H+ H K F CK C+K F +LH++ RH H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 275 PLFECHD--CHKSFTRKDNLERHVKSIH 300
F C C FT K N+++H H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVC--EN 225
C A L+ H+ H G K + C + CEK F + L +H +TH+ +K F C +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 226 CGKSFKRKYDLALHI 240
C F K ++ H
Sbjct: 71 CDLRFTTKANMKKHF 85
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
F C++C + F +++RH R H + + C C+++FTR+D L RH + IH + E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH-QVTHSD 217
+ C+VC +A E LK+H + H K Y C +C ++F ++ LI+H Q HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIHSDS 161
C++C + F + HL H SH + PY C C++ F + L RH KIHS +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
C++C ++F + L +H +H+++K + C C ++F R+ L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
K Y C C K+F + L++HQ H+ +K + C CGK+F + L H R H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP 275
+K + C CGK+F R L H R H K ++C C K F + H RIH P
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSD 217
+ C C KA L +H ++H G K Y C C K+F + + LI HQ H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSE 306
K + C C K F + +H R+H ++C +C K+F++ L H + IH PS
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR-IHTSGPSS 71
Query: 307 N 307
Sbjct: 72 G 72
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
C C K F S L H+ H PY+C C K F L H +IH+
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
PY C C K F L +H ++H+ K + C C KA L H +IH
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 190 LKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
++ Y C + C++ F ++L +H H+ +K F C C ++F R L HIRTH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 165 WFCKV--CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+ C V C++ + L +H++IH G K + C IC ++F + L H TH+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 246 LKRFQCKL--CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
++ + C + CD+ F + RH+RIH + F+C C ++F+R D+L H+++
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 206 NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMR 265
N+L+ + V E+C + F R +L HIR H K FQC++C + F ++
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 266 RHMRIH 271
H+R H
Sbjct: 67 THIRTH 72
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 133 LNPYEC--SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
+ PY C +C + F +L RH++IH+ K + C++C + + L H++ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
CD+ F L H H P++C C + F L H++ H+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKI----FVCENCGKSFKRKYDLALH 239
+ H G K Y C C+K+F +K L H + D FVC CGK+F R+ +A H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL----FECHDCHKSFTRKDNLERHV 296
RTH K + C CDK F + H + + D F C C K+FTR++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 297 KSIHLEDPSENTNT 310
+ D E N+
Sbjct: 68 DNCAGPDGVEGENS 81
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH----FPLKRFQCKLCDKIFFTLHNMRRH 267
TH+ +K + C +C K+F++K L +H + + F F C C K F + M RH
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLN----PYECSNCHKGFKNKGKLNRH 154
+C CDKTF K LD H + D N + CS C K F + + RH
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.4 bits (80), Expect = 0.065, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK---EQWFCKVCNKALMSVESLKKHMK 185
+H PY CS+C K F+ K L+ H K + D + C C K ++ +H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 186 IHAG 189
AG
Sbjct: 69 NCAG 72
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKDR--PLFECHDCHKSFTRKDNLERHVKSIH 300
++CK+C +++ + N RH R ++ C C K FTRKDN+ HVK IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 189 GLKNYHCDICEKSFIEKNDLIKHQVTHSDK--KIFVCENCGKSFKRKYDLALHIR 241
G Y C +C + + ++ +H VT + K++ C C K F RK ++ H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 107 KLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKE 163
K C+ C S L H +H D+ PY C+ C+ FK KG L +HMK + SK+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR 269
++CE CG K+ L HIRTH ++ + C C+ F T N+ +HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 164 QWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH 211
++ C+ C LKKH++ H ++ YHC C SF K +L KH
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 264 MRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
+++H+R H D + C C+ SF K NL +H+KS
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
Y C+ C + + L KH TH+D + + C C SFK K +L H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 246 LKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH----L 301
+K FQC++C + F ++ H+R H F C C + F R D +RH H L
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 302 EDPSENTNTINGHLAIE 318
ED E + N HL E
Sbjct: 61 EDKVEELLSKNYHLENE 77
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE 278
K F C C ++F R L HIRTH K F C +C + F +RH I P+ E
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKR 232
+K + C IC ++F + L H TH+ +K F C+ CG+ F R
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQ 212
C++C + + L H++ H G K + CDIC + F ++ +H+
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 108 LSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKI 157
C IC + F HL H +H P+ C C + F + RH I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGL-- 190
+ P++C C + F L H++ H+ K + C +C + + K+H I L
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGRKFARSDERKRHRDIQHILPI 59
Query: 191 ----------KNYHCD 196
KNYH +
Sbjct: 60 LEDKVEELLSKNYHLE 75
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 223 CENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
C CGK F+ Y L +H+RTH K ++C+ C+ ++R H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
S S+E C C K S L H++ H G K Y C+ CE + +K L H H
Sbjct: 2 SSSRE---CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 137 ECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
ECS C K F++ LN H++ H+ K + C+ C A SL+ H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEK-PYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
C C K F + +L+ H +H PY+C C K L H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 250 QCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+C C K F + + + H+R H ++C C + +K +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
C C K F L H TH+ +K + CE C + +K L H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 220 IFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHMRIHKDRP 275
++VC ENCGK+FK+ L +H +H ++C + CDK F ++RH ++H P
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYEC--SNCHKGFKNKGKLNRHMKIHS 159
C K F + L H+ SH PYEC C K F +L RH K+H+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 220 IFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRHMRIHKDRP 275
++VC ENCGK+FK+ L +H +H ++C + CDK F ++RH ++H P
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYEC--SNCHKGFKNKGKLNRHMKIHS 159
C K F + L H+ SH PYEC C K F +L RH K+H+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIH 158
C KT+ SHL H +H P+ CS C + F +L+RH + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
C K LK H + H G K + C CE+ F ++L +H+ TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 198 CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTH 243
C K++ + + L H TH+ +K F C + C + F R +L+ H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 212 QVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQC--KLCDKIFFTLHNMRRH 267
Q+ S + +C CGK++ + L H RTH K F C K C++ F + RH
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 268 MRIH 271
R H
Sbjct: 69 RRTH 72
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECH--DCHKSFTRKDNLERHVKS 298
C K +F +++ H R H F C C + F R D L RH ++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKI--FVCENCGKSFKRKYDLALHIR 241
+ H+G K Y C IC F + + H + + + F C +C RK DL +H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRH-MKIHSDSKEQWFCKVCNKALMSVESLKKHMK 185
+H PYEC CH F G + H ++ H+++ ++ C C+ + L H++
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 269 RIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLED 303
R H +EC+ CH FT+ ++ H+ H E+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 42
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 102 TSLKAKLSCDI--CDKTFVNKSHLDYHK-LSHQDLNPYECSN--CHKGFKNKGKLNRHMK 156
+S + + CD C + F N+ +L++HK H + C C K F K L HMK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 157 IHSDSKE 163
+HSD+++
Sbjct: 62 LHSDTRD 68
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFC--KVCNKALMSVESLKKHMKIHAGLKN 192
P + C + F N+ LN H K ++ + C C K+ + LK+HMK+H+ ++
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 193 YHCDICEKS 201
Y C+ S
Sbjct: 69 YICEFSGPS 77
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 170 CNKALMSVESLKKHMKI-HAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
C + + + L H K H K++ C C KSF K L +H HSD + ++CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 227 GKS 229
G S
Sbjct: 75 GPS 77
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
+ +++C+IC K F + HL+ HKLSH PY
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S ++++ C+ CGKSF++K L LH R H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDS 161
YEC C K F+ KG L H +IH+ S
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGS 36
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 34.7 bits (78), Expect = 0.097, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 251 CKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSEN 307
C +C + F + RH+R+ +F C C +F L RH+ H PSEN
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH---PSEN 84
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 222 VCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHM 268
+C CG+SF K H+R + F CK C F++ + RH+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 159 SDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH 211
S S E C VC ++ S + ++H+++ + + C C +F L +H
Sbjct: 23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 134 NPYECSNCHKGFKNKGKLNRHMKIHS 159
NPYECS C K F K +L H + H+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHA 34
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+G Y C C K+F K+ LI HQ TH+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S + + C CGK+F RK L H RTH
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P+EC++C K F+ KG L H +IH+ K
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K F C +CGKSF+ K +L H R H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K + C C KSF K +L+ HQ H+ +K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+G K + C CEK+F K+ L+ HQ TH+++K
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C +C K+F +K L +HQ TH+ +K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYEC C K F K L +H K H+ K
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNP 135
C +C K F K+HL H+ +H P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLEDPS 305
+EC C K+FT+K +L +H K+ E PS
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C+ C K F KL RH ++H+ K
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K+F + + L +HQ H+ +K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S KIF CE C K FK K+ L H+R H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKD 273
K F C+ C+K+F H+++ H+RIH +
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSD 217
Y C +CE+SF+EK+ L +HQ H +
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
+ PY CS C K F++K L HM+ H+ K
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S K + C CGK+F+ K L +H+RTH
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+G+K Y C C K+F K+ LI H TH+ +K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 221 FVCENCGKSFKRKYDLALHIRTH 243
+ C CGK+F RKY L H RTH
Sbjct: 13 YECHECGKAFSRKYQLISHQRTH 35
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLEDPS 305
+ECH+C K+F+RK L H ++ E PS
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPS 41
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 134 NPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
NPYEC C K F K +L H + H+ K
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
Y C C K+F K LI HQ TH+ +K
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C+ C K F KL RH +IH+ K
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ Y C +C K+F ++++LIKHQ H+ +K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLK 191
+ C VC KA +L KH KIH G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C+ C K F ++ L +H KIH+ K
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKE 163
PY CS C+ FK KG L +HMK + SK+
Sbjct: 2 PYHCSYCNFSFKTKGNLTKHMKSKAHSKK 30
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
K +VC CGK+F+ K L +H RTH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDS 161
PY C C K F KG L H+++H+ S
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C+ CGK+F +K L +HIR H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
+ PY C +C + F + G L RH++IH+ K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYECS C K F ++ L+ H +IHS K
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C +C K+F + L HQ HS KK
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLK 191
+ C VC KA +SL H +IH+G K
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C C K F K L +H +IH+ K
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C K+F +K +L +HQ H+ +K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 134 NPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P +C C K F G L RH++IHS K
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
+C+ C K F T N++RH+RIH
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIH 25
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYECS C K F K +L+ H +IH+ K
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C IC KSF +K+ L HQ H+ +K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 198 CEKSFIEKNDLIKH----QVTHSDKKIFVC--ENC---GKSFKRKYDLALHIRTH 243
C+++F ++L+ H V ++ VC E C GKSFK KY L HIR H
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y CD+C K+F L +HQ HS +K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYEC C K F + L +H ++HS K
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTHFPLK 247
+K + CE+CGK + R+ +L +H R H K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C +C KG+ + L+ H ++H K
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
+NPY+CS C K F K +L H ++H+ K
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREK 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSD 160
PYECS+C K F K +L+ H +IH+
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C +CGKSF +K L +H R H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDS 161
PY+C C K F +G L H ++H+ S
Sbjct: 10 PYQCKECGKSFSQRGSLAVHERLHTGS 36
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K + C+ CGKSF ++ LA+H R H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C+ C K F K LNRH +IH+ K
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNP 135
C+ C K+F+ KSHL+ H+ H P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C KSFI+K+ L +H+ H+ +K
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P+ C C K F+ + LN H IH+ K
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K + CD C+KSF +++ L H++ H+ +K
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNP 135
CD CDK+F +S L+ H++ H P
Sbjct: 15 CDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHS 216
K Y C C K+FI + LI HQ THS
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHS 36
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PYECS C K F +L H + HS
Sbjct: 12 PYECSECGKAFIRNSQLIVHQRTHS 36
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C CGK+F R L +H RTH
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYEC C K F G LN+H ++H+ +
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K+F ++ L HQ THS +K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C CGK+F+ + LA+H TH
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY CS C K F +K L HM+ HS K
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C CGK+F K L +H+RTH
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C K+F K+ LI H THS +K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K +VC CGK+F K L +H R H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLEDPS 305
FEC +C K+FTRK L H K E PS
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPS 41
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
K F C CGK+F RK L++H + H
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSK 162
+EC+ C K F K L+ H KIH+ K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K + C +CGK+F K L +H RTH
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PYEC++C K F K +L H + H+
Sbjct: 10 PYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+G K Y C C K+F K+ LI HQ TH+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKI---FVCENCGKSFKRKYDLALHIRTHF 244
+G C+IC + +K L HQ H++ F CE CGK F++ +A H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 245 P 245
P
Sbjct: 63 P 63
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K + C C+K+F K++LI HQ TH+ +K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P+ECS C K F K L H + H+ K
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLEDPS 305
FEC +C K+F K NL H ++ E PS
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPS 41
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 251 CKLCDKIFF-TLHNMRRHMRI-HKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENT 308
C C+ + TL +++HM + K + +C C K F K L H + H PS+
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE 86
Query: 309 NTING 313
+ G
Sbjct: 87 ASEGG 91
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 101 CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKG 144
C L+ L C C K F +K+ L+YH ++ P + G
Sbjct: 48 CQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGG 91
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
++ F C CGK F R+ LA H+R H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P++C+ C KGF + L H+++HS K
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
K +VCE CGK F + LA HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K +VC+ CGK+F + L++H R H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C+ C K F ++ L H KIH+ K
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C K+F ++++L HQ H+ +K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P++C C KGF + LN H K+H+ K
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYEC+ C K F + L H IH+ K
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K+F ++ L HQ H+ KK
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K F C+ CGK+F++ LA H+R H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C CHK F+ L H +IH+ K
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y CD+C KSF + L HQ H+ +K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 134 NPYECSNCHKGFKNKGKLNRHMKIHS 159
NPYEC C K F K +L H K HS
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C CGK +KR+ DL H R H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C C KG+K + L+ H ++H+ K
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C C K F+ + L H IH+ K
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C+ C K F++ L+RH +IH+ K
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K + CDIC KSF ++ L +H + H+ +K
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNP 135
CDIC K+F +S L+ H + H P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P++C C K F + +LNRH +H+ K
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K + C CG FKRK ++ H+R+H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNP 135
C+ C KTF + +HL H+L H NP
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
++Y C C K+F K+ LI HQ H+ +K
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSK 162
YECS C K F K L H +IH+ K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 221 FVCENCGKSFKRKYDLALHIRTH 243
+ C CGK+F RK L +H R H
Sbjct: 13 YECSECGKAFARKSTLIMHQRIH 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C CGK+F +K L+ H RTH
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K+F +K+ L HQ TH+ +K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K+ C NCGK+F K L +H R H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDK 218
K Y C+ C+K+F K++L+ HQ TH+ +
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSD 160
PYEC+ C K F K L H + H+
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKI 220
+G K Y C+ C K F K+ LI HQ H+ +K+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLED 303
+ C C K F+R D+L H+K +H +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSE 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K +VC CGK+F RK H R H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C C KG+ +K L+ H K+H+ +
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + CE CGK + K++L +H + H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PY CS+C K F K +L H IH+
Sbjct: 10 PYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K +VC +CGK+F K L +H H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+ C C+++FTR+D L RH + IH
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIH 26
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S KK VC CGK+F++ L+ H R H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSK 162
YECS C K F K L+ H +IH K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
++Y C C K+FI+K+ L HQ H +K
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P+EC+ C K F +L H +IH+ K
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K F C CGKSF LA H R H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
+K + C +CGK+F RK L +H ++H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+CS C K F LN H +IH+ +
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PY C+ C K F LN+H+++H+
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K FI + DL H + H+ +K
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C C K F +L RH +IH+ K
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y CD C K+F +L++HQ H+ +K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHS 216
K Y C+ C K+FI K+ LI H+ TH+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y+C C KSF + L+KHQ HS +K
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEK 39
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDK 218
+G K Y C C+++F + N L++HQ H+ K
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
P++C +C K F + LN+H +IH+ K
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C K+F +++LIKHQ H+ +K
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C+ C K F + L +H KIH+ K
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PYEC C K F L +H ++H+ K
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C K+F + LI+HQ H+ +K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+K Y C+ C K+F + L HQV H+ +K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKK 219
C+ C KSFI+ LI+HQ H+ +K
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDK 218
K Y C C+ +F + LI+HQ TH+ K
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+CS+C K F K +L H K H+ +
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 188 AGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+G K Y C+ C K+F K+ LI H+ H+ K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C+ C K+F ++L HQV H+ +K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 277 FECHDCHKSFTRKDNLERHVK 297
F+C DC +SF+R D+L H K
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDS 161
P+ C C F K RH+K+H+D+
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVHTDT 33
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
K + C CGKSF Y L H TH
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITH 35
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y C C KSF L +H +TH+ +K
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
>pdb|1NCS|A Chain A, Nmr Study Of Swi5 Zinc Finger Domain 1
Length = 47
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 219 KIFVC--ENCGKSFKRKYDLALHIRTHF 244
K F C C K+FKR+Y++ HI+TH
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHL 44
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K Y CD+C K F + + L HQ H+ +K
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C C K F + +L H +IH+ K
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,965,773
Number of Sequences: 62578
Number of extensions: 541837
Number of successful extensions: 3077
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 1061
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)