RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12560
(440 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 137 bits (347), Expect = 1e-38
Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 116 TFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKA 173
+ S PY C C K F L H + H+ K + C C K+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKS 58
Query: 174 LMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRK 233
+ L +H + H G K Y C C KSF ++ +L HQ TH+ +K + C CGKSF +
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL 118
Query: 234 YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNL 292
L H RTH K ++C C K F N+ H R H ++P ++C +C KSF+R+D L
Sbjct: 119 AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDAL 177
Query: 293 ERHVKSIH 300
H + H
Sbjct: 178 NVH-QRTH 184
Score = 115 bits (290), Expect = 2e-30
Identities = 58/168 (34%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
Y C +C + F + H H T K C C K+F +K L H+ +H PY+
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH-TGEKP-YKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 138 CSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C K F + L H + H+ K C C K+ + L+ H + H G K Y C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYA---CPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 196 DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
C KSF +++L HQ TH+ +K + C CGKSF R+ L +H RTH
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 87.9 bits (219), Expect = 2e-20
Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
YKC +C + F K + H H T K C C K+F +++L H+ +H PY
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTH-TGEKP-YKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 138 CSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C K F L H + H+ K + C C K+ ++L H + H G K Y C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYK---CPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 196 DICEKSFIEKNDLIKHQVTHSDKK 219
C KSF ++ L HQ TH+ KK
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 110 bits (277), Expect = 1e-28
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 135 PYECSN--CHKGFKNKGKLNRHMKIHSDSK--EQWFCK--VCNKALMSVESLKKHMKIHA 188
Y CS C + KL H+ H+ K CK C K S+ L +H H
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP---CKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 189 GLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKI--FVC--ENCGKSFKRKYDLALHIRT 242
G KN+ CD C+ F K ++ KH + KI +VC ENCGK+FK+ L +H +
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Query: 243 HFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
H ++C CDK F ++RH ++H P + C +HV H
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Query: 301 LE 302
+
Sbjct: 189 QD 190
Score = 92.7 bits (231), Expect = 3e-22
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 182 KHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLA 237
+ K Y C C ++ + L H H+ +K F C+ C K F + L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 238 LHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIH---KDRPLFECH--DCHKSFTRKD 290
H TH K F C CD F T NM++H K + CH +C K+F + +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-YVCHFENCGKAFKKHN 120
Query: 291 NLERHVKSIH 300
L+ H + H
Sbjct: 121 QLKVH-QFSH 129
Score = 91.1 bits (227), Expect = 1e-21
Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 25/181 (13%)
Query: 80 YKC--LKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKL 128
Y C C + + + H H C + C+K F + HL H L
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKE-------EGCEKGFTSLHHLTRHSL 65
Query: 129 SHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWF---CKVCNKALMSVESLKKH 183
+H + C C F K + +H + K + + C KA LK H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 184 MKIHAGLKNYHC--DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
H Y C + C+K F + L +H+ H+ ++C K H+
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Query: 242 T 242
Sbjct: 186 E 186
Score = 67.2 bits (165), Expect = 3e-13
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 209 IKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNM 264
+ + K ++C CG ++ + + L H+ H K F CK C+K F +LH++
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 265 RRHMRIH-KDRPLFEC--HDCHKSFTRKDNLERHVKSIH 300
RH H ++ F C C FT K N+++H +
Sbjct: 61 TRHSLTHTGEKN-FTCDSDGCDLRFTTKANMKKH-FNRF 97
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 100 bits (252), Expect = 2e-25
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 135 PYECSNCHKGFKNKGKLNRHMK---IHSDSK----EQWFCKVCNKALMSVESLKKHMKIH 187
C + F ++ +L H+ IH + K C + + L HM+ H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 188 AGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHI-RT 242
G K + C C KS+ +L H +H+ +K ++CE C K+F D A H RT
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 243 HFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
H K + CKL C K + ++R+H++
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 97.3 bits (243), Expect = 3e-24
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 110 CDICDKTFVNKSHLDYH---KLSHQDLNPYECSNC-----HKGFKNKGKLNRHMKIHSDS 161
D C + F ++ L +H + H + + C + FK + L HM+ H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 162 K------EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC--DICEKSFIEKNDLIKHQV 213
K E C K+ +E+LK H++ H G K Y C + C K+F +D KHQ
Sbjct: 66 KPHKCTFEG-----CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 214 -THSDKKIFVCEN--CGKSFKRKYDLALHIRTH 243
THS++K +VC+ C K + L H++T
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 86.1 bits (214), Expect = 3e-20
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 191 KNYHCDICEKSFIEKNDLIKH---QVTHSDKKIFVCENCG-----KSFKRKYDLALHIRT 242
+ D C + F + L+ H + H ++K FVC G + FK +Y L +H+R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 243 HFPLKRFQCKL--CDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLERHVK 297
H K +C C K + L N++ H+R H ++P + C C K+F+ + +H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQN 120
Query: 298 SIH 300
H
Sbjct: 121 RTH 123
Score = 73.4 bits (181), Expect = 1e-15
Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 20/154 (12%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKA--------KLSCDICDKTFVNKSHLDYHKLSHQ 131
+ C ++F + +HI+ + C + F + L H H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 132 DLNPYEC--SNCHKGFKNKGKLNRHMKIHSDSK----EQWFCKVCNKALMSVESLKKHMK 185
P++C C K + L H++ H+ K E + C+KA + KH
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH---EGCSKAFSNASDRAKHQN 120
Query: 186 -IHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHS 216
H+ K Y C + C K + + + L KH T
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 61.5 bits (150), Expect = 1e-11
Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 82 CLKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQD 132
C + R FK +Y H H CT C K++ +L H SH
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEG-------CRKSYSRLENLKTHLRSHTG 94
Query: 133 LNPYEC--SNCHKGFKNKGKLNRHMK-IHSDSKEQWFCKV--CNKALMSVESLKKHMKIH 187
PY C C K F N +H HS+ K + CK+ C K SL+KH+K
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK-PYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 188 AG 189
G
Sbjct: 154 HG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 97.6 bits (244), Expect = 9e-25
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMK---IHAG 189
EC CHK F +K L H + H+ K E C C K E+L +H ++
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFE---CPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH-IRTH 243
+ + C +C+++F + +L H V+H+ + + C +C + F +K DL H I+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 95.6 bits (239), Expect = 5e-24
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR---TH 243
+G C C K F+ K L H H+ +K F C CGK + RK +L H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ F C +C + F +R HM H ++C C + F +K +L+ H+ +H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 53.3 bits (129), Expect = 4e-09
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 80 YKCLKCKRQFKVKYNCKYH-----IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
++C KC + + K N H ++ S + +C +C +TF + L H +SH
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMN-RSEQV-FTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 135 PYECSNCHKGFKNKGKLNRHM-KIHS 159
PY+CS+C + F K L HM K+HS
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHS 119
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 96.2 bits (240), Expect = 6e-24
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 12/151 (7%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH-------SDSKEQW 165
+ K + +C + F +L H+ + ++ W
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 166 F-CKVCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFV 222
C K+ + L H+++H G K + C C K F +L H+ TH+ +K F
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 223 C--ENCGKSFKRKYDLALHIRTHFPLKRFQC 251
C E C + F D H+ H K
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 92.0 bits (229), Expect = 2e-22
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK---------I 220
+ ++ I + C+++F ++L+ H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH-KDRPLF 277
C GKSFK KY L HIR H K F C C KIF N++ H R H ++P F
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-F 121
Query: 278 ECH--DCHKSFTRKDNLERH 295
+C C + F + ++H
Sbjct: 122 KCEFEGCDRRFANSSDRKKH 141
Score = 65.0 bits (159), Expect = 8e-13
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 80 YKCLKCKRQFKVKYNCKYHI---------HCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
C R F + H+ + C K+F K L H H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 131 QDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKI 186
P+ C C K F L H + H+ K + C+ C++ + KKHM +
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHV 144
Query: 187 HAGLKNYHCD 196
H K+
Sbjct: 145 HTSDKSGPSS 154
Score = 54.2 bits (131), Expect = 5e-09
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 227 GKSFKRKYDLALHI---RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH---------KDR 274
G S + + K CD+ F T+H + H+ +
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 275 PLFECHDCHKSFTRKDNLERHVKSIH 300
EC KSF K L H++ +H
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIR-VH 85
Score = 38.0 bits (89), Expect = 0.001
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
+ I + + C ++F+ L HV H+ P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGP 53
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 92.6 bits (231), Expect = 6e-23
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
CNK + L+ H + H G K Y CD CE+ F + L +HQ H+ K F C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 228 KSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
+ F R L H RTH K F C+ C K F + RH +H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 88.0 bits (219), Expect = 2e-21
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 191 KNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCEN--CGKSFKRKYDLALHIRTHFPL 246
+ + C C K + + + L H H+ +K + C+ C + F R L H R H +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLERHVKSIH 300
K FQCK C + F +++ H R H ++P F C C K F R D L RH +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHN-MH 119
Score = 59.1 bits (144), Expect = 4e-11
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 49/149 (32%)
Query: 80 YKC--LKCKRQFKVKYNCKYH--IH-------CTSLKAKLSCDICDKTFVNKSHLDYHKL 128
+ C C +++ + + H H C C++ F L H+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD-------CERRFSRSDQLKRHQR 59
Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
H + P++C C + F LK H + H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSD-----------------------------HLKTHTRTHT 90
Query: 189 GLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
G K + C C+K F ++L++H H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 85.3 bits (212), Expect = 3e-20
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--E 224
K C K +++KH+ H G + + C C K+F+E + L +HQ+ H+ +K F C E
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 225 NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH 271
CGK F ++L H+R H + + C C+K F N++ H+ H
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 82.6 bits (205), Expect = 2e-19
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ C C K F + + + KH TH + VC CGK+F L H H K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRV-HVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 249 FQCKL--CDKIFFTLHNMRRHMRIH-KDRPLFECH--DCHKSFTRKDNLERHVKSIH 300
FQC C K F N+R H+RIH DRP + C C+K F + NL+ H+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHIL-TH 117
Score = 78.3 bits (194), Expect = 9e-18
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 34/135 (25%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
C K F + S + H +H + C+ C K F KL RH +H+
Sbjct: 13 CTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHT------------- 58
Query: 173 ALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGK 228
G K + C C K F +L H H+ + +VC + C K
Sbjct: 59 ----------------GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102
Query: 229 SFKRKYDLALHIRTH 243
F + +L HI TH
Sbjct: 103 KFAQSTNLKSHILTH 117
Score = 59.1 bits (144), Expect = 5e-11
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN--CHKGFKNKGKLNRHMKIHSDSKE-QWF 166
C C K FV S L H+L H P++C+ C K F L H++IH+ +
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNY 193
CNK +LK H+ HA KN
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 84.4 bits (210), Expect = 3e-20
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 184 MKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+G K Y C C KSF K+ +H H + + C CGK FK K+ L H++ H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHK-DRPLFECHDCHKSFTRKDNL 292
+K ++C +C K F H + + +E ++ T
Sbjct: 61 TGIKPYECNICAKRFM--WRDSFHRHVTSCTKS-YEAAKAEQNTTEASGP 107
Score = 80.6 bits (200), Expect = 9e-19
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
Y C C K F +K + +RHM +H + C VC K L HMKIH G+K
Sbjct: 10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYG---CGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
Y C+IC K F+ ++ H+ S K + ++ +
Sbjct: 66 YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 74.4 bits (184), Expect = 1e-16
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C K+ +HM +H GL+ Y C +C K F K+ L+ H H+ K + C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 230 FKRKYDLALHIRTHFPLKRFQCKLCDKIF 258
F + H K ++ ++
Sbjct: 75 FMWRDS--FHRHVTSCTKSYEAAKAEQNT 101
Score = 69.8 bits (172), Expect = 5e-15
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK- 272
S K++ C+ CGKSF K H+ H L+ + C +C K F H++ HM+IH
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 273 DRPLFECHDCHKSFTRKDNLERHV 296
+P +EC+ C K F +D+ RHV
Sbjct: 63 IKP-YECNICAKRFMWRDSFHRHV 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 83.3 bits (207), Expect = 9e-20
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
K + C C + F + +L+ H+ TH+D++ + C+ C K+F+R+ L
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
H H K F+C+ C K F + H +H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 78.6 bits (195), Expect = 4e-18
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 120 KSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSV 177
S +L + + C C + F L H + H+D + C +C+KA
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT---CDICHKAFRRQ 58
Query: 178 ESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+ L+ H IH+ K + C C K F + L H+ H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 78.2 bits (194), Expect = 5e-18
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR 266
++ KK F+C+ CG+ F + Y+L +H RTH + + C +C K F ++R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
H IH K++P F+C +C K F + L H K++H
Sbjct: 64 HRYIHSKEKP-FKCQECGKGFCQSRTLAVH-KTLH 96
Score = 51.7 bits (125), Expect = 1e-08
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
+ C C R F YN H H T + +CDIC K F + HL H+ H P++
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTH-TDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 138 CSNCHKGFKNKGKLNRHMKIH 158
C C KGF L H +H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 80.2 bits (199), Expect = 8e-19
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
C+VC K + LK HM+ H G+K Y C C+ + + + L KH HSD++ F C+ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 227 GKSFKRKYDLALHIRTH 243
+ + L +H+R+H
Sbjct: 71 PYASRNSSQLTVHLRSH 87
Score = 77.8 bits (193), Expect = 5e-18
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPL 246
+ C++C K F K+ L H H+ K + C+ C + L H+R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
+ F+C++C + H+R H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 76.3 bits (189), Expect = 2e-17
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKN 192
P++C C K F K KL HM+ H+ K + CK C+ A SL KH++IH+ +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYK---CKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+ C IC + + L H +H+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 72.5 bits (179), Expect = 4e-16
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD 273
+ CE CGK F RK L H+R H +K ++CK CD ++ +H+RIH D
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 274 RPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C C + L H H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVH-LRSH 87
Score = 69.4 bits (171), Expect = 5e-15
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFC 167
C++C K F K L H H + PY+C C + LN+H++IHSD + + C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK---C 67
Query: 168 KVCNKALMSVESLKKHMKIHAGLKNYHC 195
++C A + L H++ H G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 36.6 bits (86), Expect = 0.002
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
YKC C + H IH + + C IC N S L H SH +
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIH-SDERP-FKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Query: 138 C 138
Sbjct: 95 S 95
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 79.8 bits (198), Expect = 1e-18
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH--- 271
S CE CGK F+ Y L H +H K + C +C F M H+R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+P + C C K F+R D+L H+K +H
Sbjct: 62 VGKP-YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 71.4 bits (176), Expect = 1e-15
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS--DKKIFVCE 224
C++C K V L +H H+G K Y C +C F K+ + H +H K ++C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 225 NCGKSFKRKYDLALHI-RTH 243
+CGK F R L HI + H
Sbjct: 70 SCGKGFSRPDHLNGHIKQVH 89
Score = 63.3 bits (155), Expect = 6e-13
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CK 168
C+IC K F + HL+ HKLSH PY C C FK K +++ H++ H S + + C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 169 VCNKALMSVESLKKHMK-IHAGLK 191
C K + L H+K +H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 77.1 bits (191), Expect = 7e-18
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 191 KNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
+ Y C + C++ F + L +H H+ +K F C C ++F R L HIRTH K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 249 FQCKLCDKIFFTLHNMRRHMRIH 271
F C +C + F +RH +IH
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 76.4 bits (189), Expect = 2e-17
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKS 229
C++ SL +H++IH G K + C IC ++F + L H TH+ +K F C+ CG+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 230 FKRKYDLALHIRTH 243
F R + H + H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 72.9 bits (180), Expect = 2e-16
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 135 PYECSN--CHKGFKNKGKLNRHMKIHSDSKEQWF-CKVCNKALMSVESLKKHMKIHAGLK 191
PY C C + F G L RH++IH+ ++ F C++C + + L H++ H G K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTG--QKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 192 NYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ CDIC + F ++ +H H +K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 69.4 bits (171), Expect = 4e-15
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
E+C + F + L HIR H K FQC++C + F ++ H+R H F C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 284 KSFTRKDNLERHVKSIH 300
+ F R D +RH K IH
Sbjct: 70 RKFARSDERKRHTK-IH 85
Score = 62.9 bits (154), Expect = 9e-13
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNK 172
CD+ F L H H P++C C + F L H++ H+ K + C +C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK-PFACDICGR 70
Query: 173 ALMSVESLKKHMKIHAGLKN 192
+ K+H KIH K+
Sbjct: 71 KFARSDERKRHTKIHLRQKD 90
Score = 54.4 bits (132), Expect = 7e-10
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 80 YKCLK--CKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
Y C C R+F + H IH T K C IC + F HL H +H P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIH-TGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKE 163
+ C C + F + RH KIH K+
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQKD 90
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 76.8 bits (190), Expect = 8e-18
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS--DKKIFVCENCGKSFKRKYDL 236
S + H+G K Y C IC F + + H + + F C +C RK DL
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 237 ALHIRTH 243
+H+R
Sbjct: 62 GVHLRKQ 68
Score = 67.2 bits (165), Expect = 2e-14
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH---KDRPLFECHDCHKSFTRKDNL 292
RTH K ++C +C F M+ H+ F C C RK +L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDL 61
Query: 293 ERHVKSIH 300
H++ H
Sbjct: 62 GVHLRKQH 69
Score = 52.9 bits (128), Expect = 2e-09
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 109 SCDICDKTFVNKSHLDYHKLSH--QDLNPYECSNCHKGFKNKGKLNRHM-KIHSDSK 162
C IC F + H L +++ + C +C K L H+ K HS S
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 42.9 bits (102), Expect = 7e-06
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 263 NMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ R H ++P +EC+ CH FT+ ++ H+
Sbjct: 2 SSGSSGRTHSGEKP-YECYICHARFTQSGTMKMHIL-QK 38
Score = 40.6 bits (96), Expect = 5e-05
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYH 126
Y+C C +F K H T AK C CD KS L H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 75.9 bits (188), Expect = 2e-17
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
CK+C K+ +L H+ IH+ + Y C C K F +K+D+ KH H+ +K C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 227 GKSFKRKYDLALHIRTH 243
GK+F + +L H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 71.7 bits (177), Expect = 5e-16
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ C IC KSF + L H + HSD + + C+ CGK F +K D+ H H K +C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 253 LCDKIFFTLHNMRRHMRIH 271
+C K F N+ H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 64.4 bits (158), Expect = 2e-13
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFEC 279
F C+ CGKSFKR L+ H+ H + + C+ C K F +M++H IH ++P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKC 60
Query: 280 HDCHKSFTRKDNLERHVKSIH 300
C K+F++ NL H H
Sbjct: 61 QVCGKAFSQSSNLITH-SRKH 80
Score = 61.7 bits (151), Expect = 2e-12
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--EQWFC 167
C IC K+F S L H L H D PY C C K F K + +H IH+ K + C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK---C 60
Query: 168 KVCNKALMSVESLKKHMKIHAG 189
+VC KA +L H + H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 76.0 bits (188), Expect = 2e-17
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFE 278
K F C C ++F R L HIRTH K F C +C + F +RH I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP-IL 60
Query: 279 CHDCHKSFTRKDNLERHVKSI 299
+ ++ +LE V +
Sbjct: 61 EDKVEELLSKNYHLENEVARL 81
Score = 74.5 bits (184), Expect = 7e-17
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRF 249
+K + C IC ++F + L H TH+ +K F C+ CG+ F R + H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 250 QCKLCDKIF---FTLHNMRRHMRIH 271
+++ + L N ++
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKL 84
Score = 72.9 bits (180), Expect = 3e-16
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
C++C + + L H++ H G K + CDIC + F ++ +H+ + +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP-ILEDKV 64
Query: 227 GKSFKRKYDLALHI---RTH 243
+ + Y L + +
Sbjct: 65 EELLSKNYHLENEVARLKKL 84
Score = 58.7 bits (143), Expect = 2e-11
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CK 168
C IC + F HL H +H P+ C C + F + RH I
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH---ILPILED 62
Query: 169 VCNKA---LMSVESLKKHMKIHAGLK 191
+ +E+ +K G +
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVGER 88
Score = 46.3 bits (111), Expect = 5e-07
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYE 137
++C C R F + H H T K +CDIC + F H+ L P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-TGEKP-FACDICGRKFARSDERKRHRDIQHIL-PIL 60
Query: 138 CSNCHKGFKNKGKL---NRHMKIH 158
+ L +K
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 76.1 bits (188), Expect = 2e-17
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDL 236
+ +IH C K + + + L H TH+ +K + C E C F R +L
Sbjct: 8 PDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKD 273
H R H K FQC +C++ F ++ HM+ H++
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 72.3 bits (178), Expect = 5e-16
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 201 SFIEKNDLIKHQVTHSDKKIFVCE--NCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDK 256
S ++ ++I C+ C K + + L H+RTH K ++C CD
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 257 IFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVK 297
F + RH R H +P F+C C++SF+R D+L H+K
Sbjct: 56 RFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 135 PYECS--NCHKGFKNKGKLNRHMKIHSDSKE---QWFCKVCNKALMSVESLKKHMKIHAG 189
+ C C K + L H++ H+ K W + C+ + L +H + H G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--EGCDWRFARSDELTRHYRKHTG 72
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSD 217
K + C +C +SF + L H H +
Sbjct: 73 AKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 43.8 bits (104), Expect = 6e-06
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSD 160
CD F L H H P++C C++ F L HMK H +
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 75.3 bits (186), Expect = 4e-17
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHF 244
C K++ + + L H TH+ +K + C + CG F R +L H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 245 PLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ FQC+ CD+ F ++ HM+ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 73.7 bits (182), Expect = 1e-16
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH- 271
+ CGK++ + L H+RTH K + C C F + RH R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 272 KDRPLFECHDCHKSFTRKDNLERHVKSIHL 301
RP F+C C ++F+R D+L H+K H
Sbjct: 62 GHRP-FQCQKCDRAFSRSDHLALHMK-RHF 89
Score = 71.0 bits (175), Expect = 1e-15
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCE 224
C K LK H++ H G K YHCD C F ++L +H H+ + F C+
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 225 NCGKSFKRKYDLALHIRTHF 244
C ++F R LALH++ HF
Sbjct: 70 KCDRAFSRSDHLALHMKRHF 89
Score = 43.3 bits (103), Expect = 7e-06
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
C F L H H P++C C + F L HMK H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 72.9 bits (180), Expect = 2e-16
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH----FPLKRFQCKLCDKIFFTLHN 263
TH+ +K + C +C K+F++K L +H + + F F C C K F +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 264 MRRHMRIHKDRPLFECHDCHKSF 286
M RH E + S
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 69.1 bits (170), Expect = 5e-15
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 25/109 (22%)
Query: 122 HLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLK 181
+H PY CS+C K F+ K L+ H K + D
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--------------------- 40
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSF 230
+ + C C K+F +N + +H + EN G S
Sbjct: 41 ----PNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 54.8 bits (133), Expect = 5e-10
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 110 CDICDKTFVNKSHLDYHKLSH----QDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK--E 163
C CDKTF K LD H + + CS C K F + + RH + E
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 164 QWFCKVCNKA 173
+ +
Sbjct: 78 ---GENSGPS 84
Score = 42.5 bits (101), Expect = 1e-05
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IH---CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
Y C C + F+ K H + A C C KTF ++ + H + +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 135 PYECSNCHKGF 145
E N
Sbjct: 75 GVEGENSGPSS 85
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 263 NMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ R H ++P + C C K+F +K L+ H K +
Sbjct: 2 SSGSSGRTHTGEKP-YACSHCDKTFRQKQLLDMHFK-RY 38
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 69.8 bits (172), Expect = 2e-15
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
H + K Y CD C+ SF K +L H+ H+ +K + C CG F R +L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 239 HIRTH 243
H R H
Sbjct: 64 HTRIH 68
Score = 59.8 bits (146), Expect = 6e-12
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
H K + C+ C SF+ K +LA H H K ++C +C F N++ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 268 MRIH 271
RIH
Sbjct: 65 TRIH 68
Score = 55.5 bits (135), Expect = 2e-10
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
H +H PY+C C F+ KG L H +H+ K + C +C +L
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANL 61
Query: 181 KKHMKIHAGLKNY 193
K H +IH+G K Y
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 55.2 bits (134), Expect = 3e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 151 LNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
+ H + K + C C + +L H +H G K Y C+IC F +L
Sbjct: 5 HHHHSHMTHSDKP-YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 211 HQVTHSDKK 219
H HS +K
Sbjct: 64 HTRIHSGEK 72
Score = 49.4 bits (119), Expect = 3e-08
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
H K ++C C F N+ H +H + C+ C F R NL+ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 296 VKSIH 300
IH
Sbjct: 65 -TRIH 68
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 262 HNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
H+ H + ++C C SF K NL H K++H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVH 40
Score = 32.8 bits (76), Expect = 0.025
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
YKC +C+ F+ K N H +H T K C+IC F ++L H H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVH-TGEKP-YRCNICGAQFNRPANLKTHTRIH 68
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 69.0 bits (170), Expect = 4e-15
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLAL 238
S + + Y CD C KSF +DL KH+ TH+ +K + C+ CGK+F ++ L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 239 HIRTH 243
H R H
Sbjct: 65 HHRVH 69
Score = 52.8 bits (128), Expect = 2e-09
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 148 KGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKND 207
G R + + ++ C C K+ L KH + H G K Y CD C K+FI+++
Sbjct: 3 SGSSGRSEWQQRERR-RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 208 LIKHQVTH 215
LI H H
Sbjct: 62 LIGHHRVH 69
Score = 47.4 bits (114), Expect = 2e-07
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 29/94 (30%)
Query: 207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR 266
+ + +++ + C+ CGKSF DL+ H RTH T
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH----------------T------ 42
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P ++C +C K+F ++ +L H +H
Sbjct: 43 -----GEKP-YKCDECGKAFIQRSHLIGH-HRVH 69
Score = 45.9 bits (110), Expect = 5e-07
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
CD C K+F + S L H+ +H PY+C C K F + L H ++H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 68.4 bits (168), Expect = 7e-15
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 220 IFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIHKDRP 275
++VC ENCGK+FK+ L +H +H ++C CDK F ++RH ++H P
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 276 LFECHDCHKSFTRKDNLERHVKSIH 300
+ C +HV H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 60.7 bits (148), Expect = 5e-12
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKR 248
Y C C K+F + N L HQ +H+ + + C E C K F L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 249 FQCKLCDKIF--FTLHNMRRHMRIH 271
+ C + +TL+ ++ H
Sbjct: 62 KKDDSCSFVGKTWTLY-LKHVAECH 85
Score = 58.8 bits (143), Expect = 2e-11
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+ C KA LK H H Y C C+K F + L +H+ H+ +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 225 NCGKSFKRKYDLALHI-RTH 243
+C K H+ H
Sbjct: 66 SCSFVGKTWTLYLKHVAECH 85
Score = 50.7 bits (122), Expect = 1e-08
Identities = 27/108 (25%), Positives = 35/108 (32%), Gaps = 28/108 (25%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCK 168
+ C K F + L H+ SH PYEC H+G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECP--HEG------------------------ 38
Query: 169 VCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQV-TH 215
C+K LK+H K+HAG D C +KH H
Sbjct: 39 -CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 37.6 bits (88), Expect = 6e-04
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 79 MYKCL--KCKRQFKVKYNCKYH--IHCTSLKA-KLSCDICDKTFVNKSHLDYHKLSHQDL 133
MY C C + FK K H H T + + CDK F S L H+ H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Query: 134 NPYECSNCHKGFKNKGKLNRHMK 156
+ +C K +H+
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVA 82
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 66.7 bits (164), Expect = 3e-14
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 180 LKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
IH+G K Y C C K+F + L++HQ H+ +K + C CGK+F + L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 240 IRTH 243
R H
Sbjct: 62 QRIH 65
Score = 54.4 bits (132), Expect = 6e-10
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 151 LNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
+ IHS K + C C KA L +H ++H G K Y C C K+F + + LI
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 211 HQVTHSDKK 219
HQ H+
Sbjct: 61 HQRIHTSGP 69
Score = 47.5 bits (114), Expect = 1e-07
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 31/94 (32%)
Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
HS +K + C CGK+F R L +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILV----------------------------QH 33
Query: 268 MRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
R+H ++P ++C +C K+F++ L H + IH
Sbjct: 34 QRVHTGEKP-YKCLECGKAFSQNSGLINH-QRIH 65
Score = 45.9 bits (110), Expect = 5e-07
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY 193
PY C C K F L +H ++H+ K + C C KA L H +IH +
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 26.3 bits (59), Expect = 4.3
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
Y C++C + F H +H T K C C K F S L H+ H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVH-TGEKP-YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 66.7 bits (163), Expect = 3e-14
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDK---KIFVCENCGKSFKRKYDLALHIRTH 243
+G C+IC + +K L HQ H++ F CE CGK F++ +A H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 244 FPLKRFQCKLCDK 256
P +
Sbjct: 62 HPALLLAPQESSG 74
Score = 65.1 bits (159), Expect = 1e-13
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTHFPL---KRFQCKLCDKIFFTLHNMRRHMRIH 271
S CE CG + ++K L H R H RF C+ C K F ++ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 272 KDRPLFECHDC 282
L +
Sbjct: 62 HPALLLAPQES 72
Score = 59.7 bits (145), Expect = 9e-12
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 27/97 (27%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
+C C + K LN H + H+++ +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETV--------------------------AALRFP 40
Query: 195 CDICEKSFIEKNDLIKHQVT-HSDKKIFVCENCGKSF 230
C+ C K F + + + H+ H + E+ G S
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 57.8 bits (140), Expect = 4e-11
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIHKDRPL---FECHDCHKSFTRKDNLERHVKSIHLED 303
QC++C ++ H R H + F C C K F + D++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 304 PSE 306
Sbjct: 66 LLA 68
Score = 44.3 bits (105), Expect = 2e-06
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAK-LSCDICDKTFVNKSHLDYHKLSHQDLNPY 136
+C C + K + +H H ++ A C+ C K F + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 137 ECSNC 141
Sbjct: 68 APQES 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 65.9 bits (160), Expect = 1e-13
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 179 SLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQ-----VTHSDKKIFVCENCGKSFKRK 233
S K + I G + C C ++ +L H + + S RK
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 234 YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK 272
L K +C C F +L ++ HM K
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 59.8 bits (144), Expect = 2e-11
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 6/100 (6%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIR-----THFPLKRFQCKLCDKIFFTLHNMR 265
+ + F C++C ++ +L +H+ + ++
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH-VKSIHLEDP 304
+ + +C C SF +L H +K+ H +
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 55.9 bits (134), Expect = 5e-10
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 24/123 (19%)
Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
S + + + C +C + +L HM
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET---------------------- 42
Query: 181 KKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHI 240
H + + + + S K L++ + +K+ C CG SF+ DL++H+
Sbjct: 43 -GHYR-DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Query: 241 RTH 243
Sbjct: 101 IKT 103
Score = 44.4 bits (104), Expect = 5e-06
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCT-----SLKAKLSCDICDKTFVNKSHLDYHKLSHQDLN 134
++C C + H++ T + + + K L +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKE 163
+C C F++ L+ HM ++
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 39.4 bits (91), Expect = 3e-04
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 6/84 (7%)
Query: 107 KLSCDICDKTFVNKSHLDYH-----KLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
K C C + L H + + K L
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 162 KEQWFCKVCNKALMSVESLKKHMK 185
K C C + S++ L HM
Sbjct: 79 KV-LKCMYCGHSFESLQDLSVHMI 101
Score = 36.3 bits (83), Expect = 0.004
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 263 NMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ + + I F C DC ++ L H+
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 61.8 bits (151), Expect = 1e-12
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHK---DRPLFECHDCHKSFTRKDNLERHVK 297
T ++CK+C +++ + N RH + + C C K FTRKDN+ HVK
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVK 61
Query: 298 SIH 300
IH
Sbjct: 62 IIH 64
Score = 61.4 bits (150), Expect = 1e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQVT--HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
G Y C +C + + ++ +H VT + K++ C C K F RK ++ H++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 59.5 bits (145), Expect = 8e-12
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRT--HFPLKRFQCKLCDKIFFTLHNMRRHMR 269
+ T + + C+ C + + + H T +K + C C K F NM H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 270 IH 271
I
Sbjct: 62 II 63
Score = 54.1 bits (131), Expect = 6e-10
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 110 CDICDKTFVNKSHLDYHKLS--HQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
C +C + + + S+ H ++ +++ Y C C K F K + H+KI
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 49.5 bits (119), Expect = 3e-08
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-CKVCNKALMSVESLKKHMKIHAGL 190
Y C C + + + RH + + C C K +++ H+KI +
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 80 YKCLKCKRQFKVKYNCKYH--IHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDL 133
Y+C C R + N H C C K F K ++ H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 61.8 bits (151), Expect = 1e-12
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 187 HAGLKNYHCDI--CEKSFIEKNDLIKHQ-VTHSDKKIFVCE--NCGKSFKRKYDLALHIR 241
+G CD C + F + L H+ H +K F C CGKSF K L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 242 THFPLKRFQCKLCDKIF 258
H + + C+
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 60.6 bits (148), Expect = 4e-12
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 170 CNKALMSVESLKKHMKI-HAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
C + + + L H K H K++ C C KSF K L +H HSD + ++CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 227 GKSF 230
G S
Sbjct: 75 GPSS 78
Score = 56.8 bits (138), Expect = 8e-11
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 215 HSDKKIFVC--ENCGKSFKRKYDLALHIR-THFPLKRFQCK--LCDKIFFTLHNMRRHMR 269
S C CG+ F + L H + H K F C C K F +++ HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 270 IHK-DRPLFECHDCHKSF 286
+H R + C S
Sbjct: 62 LHSDTRD-YICEFSGPSS 78
Score = 51.8 bits (125), Expect = 6e-09
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 113 CDKTFVNKSHLDYHK-LSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKV 169
C + F N+ +L++HK H + C C K F K L HMK+HSD++ + C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR-DYICEF 73
Query: 170 CNKA 173
+
Sbjct: 74 SGPS 77
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 247 KRFQCKL--CDKIFFTLHNMRRHMRIH--KDRPLFEC--HDCHKSFTRKDNLERHVKSIH 300
C C +IF + H + + F C C KSF K +L+ H+K +H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMK-LH 63
Score = 38.7 bits (91), Expect = 3e-04
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 80 YKCLK--CKRQFKVKYNCKYHIHCTSLKAK-LSCD--ICDKTFVNKSHLDYHKLSHQDLN 134
C C R F + +H + K SC C K+F K HL H H D
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 135 PYECSNCHKGF 145
Y C
Sbjct: 68 DYICEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 61.0 bits (149), Expect = 3e-12
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ C C S K L H+ H + F C C K+ +L+ H++
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ S C C S K L +H R H + F+C C N+ +HM+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 54.0 bits (131), Expect = 7e-10
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
C C + +K+ L H+ H P++C+ C K L++HMK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 52.9 bits (128), Expect = 2e-09
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
C C+ + S +L+ H +IH + + C+ C + ++L KH +
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM--SGPSS 69
Query: 227 G 227
G
Sbjct: 70 G 70
Score = 49.0 bits (118), Expect = 4e-08
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSI 299
+ +C C + +R H RIH DRP F+C+ C + NL +H+K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMK-K 59
Query: 300 H 300
Sbjct: 60 F 60
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 57.3 bits (139), Expect = 4e-11
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 206 NDLIKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHN 263
N+L+ + V + + C E+C + F R +L HIR H K FQC++C + F +
Sbjct: 7 NNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 264 MRRHMRIH 271
+ H+R H
Sbjct: 65 LTTHIRTH 72
Score = 52.7 bits (127), Expect = 2e-09
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 180 LKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
L ++ + Y C + C++ F ++L +H H+ +K F C C ++F R L
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 238 LHIRTH 243
HIRTH
Sbjct: 67 THIRTH 72
Score = 51.2 bits (123), Expect = 8e-09
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 236 LALHIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNL 292
L ++ ++ + C + CD+ F + RH+RIH +P F+C C ++F+R D+L
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHL 65
Query: 293 ERHVK 297
H++
Sbjct: 66 TTHIR 70
Score = 47.7 bits (114), Expect = 1e-07
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 121 SHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVE 178
++L + + PY C +C + F +L RH++IH+ K + C++C + +
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQK-PFQCRICMRNFSRSD 63
Query: 179 SLKKHMKIH 187
L H++ H
Sbjct: 64 HLTTHIRTH 72
Score = 47.3 bits (113), Expect = 2e-07
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 154 HMKIHSDSKEQWF-CKV--CNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIK 210
++ + K + + C V C++ + L +H++IH G K + C IC ++F + L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT 67
Query: 211 HQVTHS 216
H TH+
Sbjct: 68 HIRTHT 73
Score = 40.4 bits (95), Expect = 4e-05
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
CD+ F L H H P++C C + F L H++ H+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.5 bits (59), Expect = 4.9
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 80 YKC--LKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
Y C C R+F HI + + C IC + F HL H +H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 56.3 bits (137), Expect = 7e-11
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ F C++C + F +++RH R H ++P + C C+++FTR+D L RH + IH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 52.1 bits (126), Expect = 3e-09
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHI-RTH 243
+++ C++C ++F + L +H +H+++K + C C ++F R+ L H + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 48.3 bits (116), Expect = 6e-08
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIHS 159
C++C + F + HL H SH + PY C C++ F + L RH KIHS
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 46.7 bits (112), Expect = 2e-07
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH-QVTHS 216
C+VC +A E LK+H + H K Y C +C ++F ++ LI+H Q HS
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 55.7 bits (134), Expect = 4e-10
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 186 IHAGLKNYHCDICEKSFIEKNDLIKHQ----VTHSDKKIFVCE-----NCGKSFKRKYDL 236
I + C+++F ++L+ H V ++ VC GKSFK KY L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 237 ALHIRTHFPLKRFQC 251
HIR H K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 46.1 bits (109), Expect = 8e-07
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 130 HQDLNPYECSNCHKGFKNKGKLNRHM-KIHSDSKEQ------WF-CKVCNKALMSVESLK 181
+ +C + F +L H+ H EQ W C K+ + L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 182 KHMKIHAGLKNYHC 195
H+++H G K+
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 43.0 bits (101), Expect = 9e-06
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHI-RTHFPLKRFQ--------CKLCDKIFFTLHNM 264
+ ++C ++F ++L H+ H C K F + +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 265 RRHMRIH-KDRPLFEC 279
H+R+H ++
Sbjct: 79 VNHIRVHTGEKS-GPS 93
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 109 SCDICDKTFVNKSHLDYH-KLSHQDLNPY--------ECSNCHKGFKNKGKLNRHMKIHS 159
CD+TF L H + H EC K FK K KL H+++H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Score = 33.4 bits (76), Expect = 0.029
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 270 IHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNT 310
I + + C ++F+ L HV H+ P +N +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 54.9 bits (131), Expect = 1e-09
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 217 DKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPL 276
+K+++ C C + H R C C FF+ + H + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKK- 69
Query: 277 FECHDCHKSFTRKDNLERHVKSIHLED---PSENTNT 310
C +C ++F ++ RH +H ++ P+ ++
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
Score = 48.0 bits (113), Expect = 3e-07
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 149 GKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDL 208
G ++KE + C++CN L S+ H ++ C C F
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELK 58
Query: 209 IKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
+H+ KK C C ++FK + + H
Sbjct: 59 QEHESKCEYKK-LTCLECMRTFKSSFSIWRH 88
Score = 41.4 bits (96), Expect = 6e-05
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYH 194
Y+C C+ + + H ++ ++ C C+ S E ++H + K
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFFSPELKQEH-ESKCEYKKLT 71
Query: 195 CDICEKSFIEKNDLIKHQVT-HSDKKIFVCEN 225
C C ++F + +HQV H+ +
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQNNMAPTSG 103
Score = 40.7 bits (94), Expect = 9e-05
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
Y+C C + H + C C F + H+ + C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHER--LCRNAAVCPYCSLRFFSPELKQEHESKCEY-KKLTCL 73
Query: 140 NCHKGFKNKGKLNRHMK 156
C + FK+ + RH
Sbjct: 74 ECMRTFKSSFSIWRHQV 90
Score = 37.6 bits (86), Expect = 0.001
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
K C +C+ + H+ + N C C F + H
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYK 68
Query: 162 KEQWFCKVCNKALMSVESLKKHMK 185
K C C + S S+ +H
Sbjct: 69 K--LTCLECMRTFKSSFSIWRHQV 90
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 53.2 bits (128), Expect = 2e-09
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 210 KHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQCKL--CDKIFFTLHNMR 265
Q+ S + +C CGK++ + L H RTH K F C C++ F +
Sbjct: 7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 266 RHMRIH 271
RH R H
Sbjct: 67 RHRRTH 72
Score = 52.4 bits (126), Expect = 3e-09
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 179 SLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTHSDKKIFVC--ENCGKSFKRKY 234
+ ++++ C C K++ + + L H TH+ +K F C + C + F R
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 235 DLALHIRTH 243
+L+ H RTH
Sbjct: 64 ELSRHRRTH 72
Score = 50.1 bits (120), Expect = 2e-08
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 239 HIRTHFPLKRFQCKL--CDKIFFTLHNMRRHMRIHK-DRPLFECH--DCHKSFTRKDNLE 293
++ C C K +F +++ H R H ++P F C C + F R D L
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELS 66
Query: 294 RHVKS 298
RH ++
Sbjct: 67 RHRRT 71
Score = 40.8 bits (96), Expect = 3e-05
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 110 CDI--CDKTFVNKSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIH 158
C C KT+ SHL H +H P+ CS C + F +L+RH + H
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 39.3 bits (92), Expect = 1e-04
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 170 CNKALMSVESLKKHMKIHAGLKNYHCDI--CEKSFIEKNDLIKHQVTH 215
C K LK H + H G K + C CE+ F ++L +H+ TH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.1 bits (81), Expect = 0.004
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 120 KSHLDYHKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSKE---QWFCKVCNKAL 174
S ++ + + CS C K + L H + H+ K W K C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW--KGCERRF 59
Query: 175 MSVESLKKHMKIH 187
+ L +H + H
Sbjct: 60 ARSDELSRHRRTH 72
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 50.4 bits (120), Expect = 2e-08
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 176 SVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYD 235
S S K KIH G ++ C C FI + T S +K +CE C K ++
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAA 54
Query: 236 LALHIRTH 243
L
Sbjct: 55 LNKDEGNE 62
Score = 43.5 bits (102), Expect = 4e-06
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 149 GKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDL 208
G + KIH + Q C C + +L + K C+ C K ++ L
Sbjct: 4 GSSGKRQKIHLGDRSQ-KCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAAL 55
Query: 209 IKHQVTHSDKK 219
K + S KK
Sbjct: 56 NKDEGNESGKK 66
Score = 42.0 bits (98), Expect = 1e-05
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 208 LIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRH 267
K Q H + C CG F R+ L+ K C+ C K + +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 268 MRIH 271
Sbjct: 59 EGNE 62
Score = 39.6 bits (92), Expect = 9e-05
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESL 180
+ H +CS C F + L+R + C+ C K +L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR--------KTPMCEKCRKDSCQEAAL 55
Query: 181 KKHMKIHAGLKNY 193
K +G K
Sbjct: 56 NKDEGNESGKKTS 68
Score = 36.9 bits (85), Expect = 0.001
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
C C F+ +S L K C C K + LN+ S K
Sbjct: 21 CSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 31.9 bits (72), Expect = 0.059
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 7/60 (11%)
Query: 236 LALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+ H + +C C IF R C C K ++ L +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Score = 30.8 bits (69), Expect = 0.13
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 263 NMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSI 299
+ + +IH +C C F R+ L R +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPM 41
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.4 bits (112), Expect = 1e-07
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKR 248
Y C+ C + + L KH TH+D + + C C SFK K +L H+++ K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 47.0 bits (111), Expect = 1e-07
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
++CE CG K+ L HIRTH ++ + C C+ F T N+ +HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 46.6 bits (110), Expect = 2e-07
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
C+ C LKKH++ H ++ YHC C SF K +L KH + + K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 45.5 bits (107), Expect = 5e-07
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
C+ C S L H +H D+ PY C+ C+ FK KG L +HMK + SK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.1 bits (93), Expect = 5e-05
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
++ C+ C +++H+R H D + C C+ SF K NL +H+KS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 39.3 bits (91), Expect = 1e-04
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLK 191
Y C C K L +H++ H+D + + C CN + + +L KHMK A K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (77), Expect = 0.008
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSH 130
Y C +C + K K HI + C C+ +F K +L H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 49.2 bits (116), Expect = 2e-07
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 6/121 (4%)
Query: 180 LKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
KK++ H G+ + + + L Q + I +
Sbjct: 10 SKKYLSNHKGIF---IHVTLEELKRYHQLTPEQ-KRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSI 299
+ + +F C LC F + ++++H+R + C C K FT D+ HV
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKK 123
Query: 300 H 300
H
Sbjct: 124 H 124
Score = 44.2 bits (103), Expect = 8e-06
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 166 FCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
F V + L L K I ++++ + + FVC
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 226 CGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR 269
C F L HIR C +C K F + + H+
Sbjct: 80 CLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVC 121
Score = 41.1 bits (95), Expect = 9e-05
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 112 ICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCN 171
I + +++S Y L+ + ++ + C C F + L +H++ +K C VC
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCK 107
Query: 172 KALMSVESLKKHM-KIHAG 189
K S +S H+ K H
Sbjct: 108 KEFTSTDSALDHVCKKHNI 126
Score = 38.0 bits (87), Expect = 0.001
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 120 KSHLDYHKLSHQDLNPYEC---SNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMS 176
+ YH+L+ + + H + + S + Q+ C +C S
Sbjct: 27 EELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSS 86
Query: 177 VESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKH 211
SLK+H++ C +C+K F + + H
Sbjct: 87 SVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDH 119
Score = 34.1 bits (77), Expect = 0.023
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 106 AKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMK 156
++ C +C F + L H + + C C K F + H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVC 121
Score = 28.7 bits (63), Expect = 1.9
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 80 YKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYH 126
+ C C F + K HI T + C +C K F + H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G+K Y C C K+F K+ LI HQ +H+ K + G
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP-SSG 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + K + C C K+F K L +H R+H +K
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S + PY CS C K F K +L H + H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.5 bits (75), Expect = 0.016
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+ C C K+F+ K L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 32.5 bits (75), Expect = 0.019
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C KTF KS L H+ SH + P S
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 28.7 bits (65), Expect = 0.34
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ +K + C C K F + H R H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L H + H G+K
Sbjct: 2 SSGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K + CDIC KSF ++ L +H + H+ +K + G
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP-SSG 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K F C+ CGKSF + L H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 36.3 bits (85), Expect = 8e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C K F + +LNRH +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C C KSF + L RH +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
CDIC K+F +S L+ H + H P S
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.073
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C +C K F + RH +H
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.4 bits (67), Expect = 0.19
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
+ K + C +C K+ L +H +H K
Sbjct: 3 SGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 9e-07
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
AG K Y C C K+F K+ LI H THS +K +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK+F K L +H+RTH K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PY CS C K F +K L HM+ HS K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 33.3 bits (77), Expect = 0.009
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+ C +C K+F+ K L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K F +KS+L H +H P S+
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.16
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA S L HM+ H+G K
Sbjct: 2 SSGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F + + HMR H
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y C C KSFI+K+ L HQ H+ +
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C +CGKSF +K L +H R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYECS+C K F K +L+ H +IH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K+F+ KS L H+ H NP S
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+EC DC KSF +K L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 29.4 bits (67), Expect = 0.19
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F + H RIH
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 154 HMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C C K+ + L H +IH G
Sbjct: 3 SGSSGTGEKPYE---CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 44.1 bits (105), Expect = 1e-06
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKH-QVTHSDKKIFVCENCGKSF 230
+ K Y C C K F + L H + H+ ++ C+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHI-RTHFPLKRFQCKLCDKIF 258
+ S K ++C++CGK F R L HI + H + +C++
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 36.8 bits (86), Expect = 6e-04
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 28/77 (36%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMK 185
S PY C +C KGF LN H+K +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK----------------------------Q 34
Query: 186 IHAGLKNYHCDICEKSF 202
+H + + C +
Sbjct: 35 VHTSERPHKCQVWVSGP 51
Score = 34.9 bits (81), Expect = 0.003
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+ C C K F+R D+L H+K +H
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.1 bits (79), Expect = 0.005
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 110 CDICDKTFVNKSHLDYH-KLSHQDLNPYECSNCHKGFKN 147
C C K F HL+ H K H P++C G +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 31.4 bits (72), Expect = 0.044
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHM-RIH-KDRPLFECHDCHKSFT 287
+ K + C+ C K F ++ H+ ++H +RP +C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPS 52
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G ++Y C C K+F K+ LI HQ H+ +K + G
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP-SSG 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + ++ + C CGK+F RK L +H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S YECS C K F K L H +IH
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 266 RHMRIHK-DRPLFECHDCHKSFTRKDNLERH 295
+R +EC +C K+F RK L H
Sbjct: 2 SSGSSGTGERH-YECSECGKAFARKSTLIMH 31
Score = 31.3 bits (72), Expect = 0.047
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F KS L H+ H P S
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + ++C C K F + H RIH
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 28.6 bits (65), Expect = 0.36
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + E C C KA +L H +IH G K
Sbjct: 2 SSGSSGTGERHYE---CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
+G K + C+ C K F + HQ +HS +K + G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K F CE CGK F H R+H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S P++C C KGF + H + HS K
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
Score = 30.6 bits (70), Expect = 0.073
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERH 295
F+C +C K F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 30.6 bits (70), Expect = 0.076
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C+ C K F+T H R H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 30.6 bits (70), Expect = 0.079
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S H+ SH P S
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
S K + C+ C K + H + H+G K
Sbjct: 3 SGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G + C C K F K +LI HQ H+ ++ + G
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP-SSG 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + F+C CGK F K +L +H + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S NP+ CS C K F +K L H KIH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 32.5 bits (75), Expect = 0.017
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 267 HMRIHK-DRPLFECHDCHKSFTRKDNLERH 295
+ P F C +C K FT K NL H
Sbjct: 3 SGSSGTGENP-FICSECGKVFTHKTNLIIH 31
Score = 32.5 bits (75), Expect = 0.017
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K F +K++L H+ H P S+
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 29.4 bits (67), Expect = 0.20
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ F C C K+F N+ H +IH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + C C K +L H KIH G +
Sbjct: 3 SGSSGTGEN-PFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C+ C K FI + DL H + H+ +K +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + CE CGK F + DL H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C KGF + L H +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 32.1 bits (74), Expect = 0.023
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F+ + L H + H P S+
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.027
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C +C K F + +L H +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
Score = 29.0 bits (66), Expect = 0.31
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C+ C K F ++ H +H
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 28.7 bits (65), Expect = 0.40
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C+ C K + L H +H G K
Sbjct: 3 SGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K + C C+K+F K++LI HQ TH+ +K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 40.5 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K F C C K+F K +L +H RTH K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIH 158
P+ECS C K F K L H + H
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTH 35
Score = 33.2 bits (77), Expect = 0.008
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
FEC +C K+F K NL H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 31.3 bits (72), Expect = 0.044
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F KS+L H+ +H P S
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.28
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F T N+ H R H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA + +L H + H G K
Sbjct: 2 SSGSSGTGEKP-FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y C IC KSF +K+ L HQ H+ +K
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGKSF +K L +H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYECS C K F K +L+ H +IH
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 34.1 bits (79), Expect = 0.005
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C IC K+F KS L H+ H P S+
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 33.3 bits (77), Expect = 0.008
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC C KSFT+K L H + IH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C +C K+ L H +IH G K
Sbjct: 2 SSGSSGTGEKPYE---CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.30
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C +C K F + H +IH
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y C C KSF K+ L HQ H+ ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C +CGKSF K L +H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+CS+C K F K +L H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K+F KS L H+ H S+
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C DC KSFT K L H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F +R H + H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 28.3 bits (64), Expect = 0.55
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K+ L+ H K H G ++
Sbjct: 3 SGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G+K Y C+ C K+F K+ LI H TH+ +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + K +VC CGK+F+ K L +H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S + PY C+ C K F++K L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.035
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C++C K+F K L H H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 30.5 bits (70), Expect = 0.084
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C+ C K F +KS+L H +H +
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.23
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ +K + C C K F + + H R H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 28.2 bits (64), Expect = 0.56
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K C C KA S L H + H G
Sbjct: 2 SSGSSGTGMKPYV---CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
+G K Y C C K + + DL HQ H+ +K+ + G
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP-SSG 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + C CGK +KR+ DL H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C KG+K + L+ H ++H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERH 295
++C +C K + R+ +L+ H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 31.3 bits (72), Expect = 0.041
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K + + LD+H+ H S
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
S K + C C K L H ++H G K
Sbjct: 3 SGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+G K Y C+ C K+FI K+ LI H+ TH+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.1 bits (92), Expect = 8e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + C CGK+F K L +H RTH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYEC+ C K F K L H + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC++C K+F K L H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C+ C K F+ KS L H+ +H ++
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.0 bits (66), Expect = 0.30
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F + H R H
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 28.7 bits (65), Expect = 0.34
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K E C C KA + L H + HAG+
Sbjct: 2 SSGSSGSGEKPYE---CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G + Y C C K+F K+ LI H+ +H+ +K
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ + ++ + C CGK+FK K L H R+H K
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYEC C K FK K L H + H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 32.1 bits (74), Expect = 0.024
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F KS L H+ SH P S
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.026
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 266 RHMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
RP +EC +C K+F K +L H + H
Sbjct: 2 SSGSSGTGQRP-YECIECGKAFKTKSSLICH-RRSH 35
Score = 28.7 bits (65), Expect = 0.32
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + E C C KA + SL H + H G K
Sbjct: 2 SSGSSGTGQRPYE---CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.39
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + ++C C K F T ++ H R H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.2 bits (103), Expect = 2e-06
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y C+ C+K+F K++L+ HQ TH+ +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C C K+F K +L +H RTH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYEC+ C K F K L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.1 bits (74), Expect = 0.025
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC++C K+F K NL H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 31.3 bits (72), Expect = 0.042
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C+ C K F KS+L H+ +H +
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.080
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F T N+ H R H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 154 HMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C C KA + +L H + H G
Sbjct: 3 SGSSGTGEKPYE---CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C KSFI+K+ L +H+ H+ +K
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K ++C CGKSF +K L H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C+ C K F K LNRH +IH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K+F+ KSHL+ H+ H P S
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C++C KSF +K +L RH + IH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
Score = 29.4 bits (67), Expect = 0.19
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F ++ RH RIH
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C C K+F +++LIKHQ H+ +K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K ++C CGK+F + +L H + H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C+ C K F + L +H KIH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C +C K+FT + NL +H K IH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA +L KH KIH K
Sbjct: 3 SGSSGTGEKP-YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F +S+L H+ H P S
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F N+ +H +IH
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.2 bits (103), Expect = 2e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G + Y C +C K+F ++++LIKHQ H+ +K + G
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP-SSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + ++ ++C CGK+F + +L H + H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C+ C K F ++ L +H KIH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C C K+FT + NL +H K IH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IH 35
Score = 30.9 bits (71), Expect = 0.062
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C +C K F ++S+L H+ H P S
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.081
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + + C VC KA +L KH KIH G K
Sbjct: 2 SSGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.49
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + + C +C K F N+ +H +IH
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G ++Y C C K+FI+K+ L HQ H +K
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 39.0 bits (92), Expect = 8e-05
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + ++ + C CGK+F +K L++H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S YECS C K F K L+ H +IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 31.7 bits (73), Expect = 0.029
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F+ KS L H+ H+ P S
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.052
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC +C K+F +K L H + IH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIH 35
Score = 28.3 bits (64), Expect = 0.53
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + ++C C K F + H RIH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 28.3 bits (64), Expect = 0.61
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + + C C KA + +L H +IH G K
Sbjct: 3 SGSSGTGERH-YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C +C K+F + L HQ HS KK +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK+F + L++H R H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PYECS C K F ++ L+ H +IHS K
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 31.7 bits (73), Expect = 0.032
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C +C K F ++ L H+ H P S+
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 31.3 bits (72), Expect = 0.038
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC C K+F+ + +L H + IH
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
Score = 30.6 bits (70), Expect = 0.086
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C VC KA +SL H +IH+G K
Sbjct: 2 SSGSSGTGEKPYE---CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C +C K F ++ H RIH
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K + C C KSF + L HQ H+ +K
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 5e-05
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K F C CGKSF LA H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P+EC+ C K F +L H +IH
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 33.2 bits (77), Expect = 0.009
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 266 RHMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P FEC +C KSF+ L H + IH
Sbjct: 2 SSGSSGTGEKP-FECAECGKSFSISSQLATH-QRIH 35
Score = 31.7 bits (73), Expect = 0.028
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K+F S L H+ H P S
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C C K+ L H +IH G K
Sbjct: 2 SSGSSGTGEKPFE---CAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.25
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F + H RIH
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C +C K+F +K L +HQ TH+ +K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ + +K + C+ C K+F +K LA H +TH K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYEC C K F K L +H K H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC C K+FT+K +L +H + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C +C K F K+HL H+ +H P S
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.075
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E CKVC+KA L +H K H G K
Sbjct: 2 SSGSSGTGEKPYE---CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++CK+C K F ++ +H + H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y+C+ C K+FI + L +HQ H+ +K
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + CE CGK+F L H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C C K F + +L H +IH
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C +C K+F L+ H + IH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIH 35
Score = 31.3 bits (72), Expect = 0.045
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C+ C KA + L++H +IH G K
Sbjct: 2 SSGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.078
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F++ S L H+ H P S
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.22
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C+ C K F ++ H RIH
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C C K+F K+ L HQ +H+ ++ +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C +CGK+F RK L +H ++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+CS+C K F K L+ H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K F KS L H+ SH S+
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C DC K+FTRK L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F + H + H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA L H + H G ++
Sbjct: 2 SSGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C C K+F ++++L HQ H+ +K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK+F + +L H + H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIH 158
PY C+ C K F ++ L H KIH
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.7 bits (73), Expect = 0.026
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 266 RHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P + C +C K+FT + NL H + IH
Sbjct: 2 SSGSSGTGEKP-YRCAECGKAFTDRSNLFTH-QKIH 35
Score = 31.3 bits (72), Expect = 0.042
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F ++S+L H+ H P S
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.082
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F N+ H +IH
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 27.9 bits (63), Expect = 0.72
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C KA +L H KIH G K
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C+ C K+F ++ L HQ THS +K + G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP-SSG 46
Score = 38.7 bits (91), Expect = 9e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK+F+ + LA+H TH K
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.008
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PY+C+ C K F+ + L H HS K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 31.4 bits (72), Expect = 0.042
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K+F + +L H ++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
Score = 31.4 bits (72), Expect = 0.044
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F +S L H+ +H P S
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA + SL H H+G K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.31
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F ++ H H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+G K Y C+ C K+F +K+ L HQ TH+ +K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + C CGK+F +K L+ H RTH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C+ C K F K L+ H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C KTF KS L H+ +H P S
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.048
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+ C++C K+F++K L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 28.3 bits (64), Expect = 0.54
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F + H R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 26.7 bits (60), Expect = 2.2
Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C C K L H + H G K
Sbjct: 3 SGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K + C C KSF K +L+ HQ H+ +K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K F C +CGKSF+ K +L H R H K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S P+EC++C K F+ KG L H +IH+ K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ FEC C KSF K NL H + IH
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
Score = 31.7 bits (73), Expect = 0.033
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K+F K +L H+ H S
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 31.4 bits (72), Expect = 0.042
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F N+ H RIH
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K+ + +L H +IH G K+
Sbjct: 3 SGSSGTGQK-PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y CD+C K+F L +HQ HS +K +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C+ C K+F L H R H K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PYEC C K F + L +H ++HS K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 31.3 bits (72), Expect = 0.048
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
CD+C K F + + L H+ H P S+
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.11
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 154 HMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E C VC KA SL +H ++H+G K
Sbjct: 3 SGSSGTGEKPYE---CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC C K+F+ +L +H + +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVH 35
Score = 28.6 bits (65), Expect = 0.37
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C +C K F ++ +H R+H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 42.7 bits (101), Expect = 4e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 211 HQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K F C CG F R +L+ H R+H +K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 37.3 bits (87), Expect = 3e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 183 HMKIHAGLKNYHCD--ICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K + C C F ++L +H+ +HS K +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 267 HMRIHK-DRPLFECH--DCHKSFTRKDNLERHVKSIH 300
++P F C C F+R D L RH + H
Sbjct: 3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRH-RRSH 37
Score = 32.3 bits (74), Expect = 0.022
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 239 HIRTHFPLKRFQCK--LCDKIFFTLHNMRRHMRIH-KDRPLFEC 279
+ K F C C F + RH R H +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGP 45
Score = 29.6 bits (67), Expect = 0.17
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 126 HKLSHQDLNPYECS--NCHKGFKNKGKLNRHMKIHSDSK 162
S P+ C+ C F +L+RH + HS K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVK 41
Score = 28.0 bits (63), Expect = 0.58
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 154 HMKIHSDSKEQWFCKV--CNKALMSVESLKKHMKIHAGLKNYHCD 196
+ K + C C + L +H + H+G+K
Sbjct: 3 SGSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 25.0 bits (55), Expect = 9.1
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 113 CDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C F L H+ SH + P S+
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C++C K+F+ L +H H+ + + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ + +K + C CGK+F L H+R H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.0 bits (84), Expect = 9e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C+ C K F LN+H+++H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C+ C K+F +L +H +H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
+ K + C VC KA + L +H+++H
Sbjct: 2 SSGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.1 bits (74), Expect = 0.022
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C++C K FV +HL+ H H S+
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 30.2 bits (69), Expect = 0.093
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C +C K F ++ +H+R+H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
+G K Y CD C K+F +L++HQ H+ +K + G
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP-SSG 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K +VC+ CGK+F +L H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C C K F +L RH +IH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C C K+F L RH + IH
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
Score = 31.3 bits (72), Expect = 0.039
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C C KA L +H +IH G K
Sbjct: 2 SSGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.085
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
CD C K F + L H+ H P S
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.34
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F + RH RIH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K + C C KSF + LI HQ H+ +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K C CGKSF L +H R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P+EC C K F +L H +IH
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 31.7 bits (73), Expect = 0.028
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
EC +C KSF+ L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 30.6 bits (70), Expect = 0.072
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K+F S L H+ H NP S
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K C+ C K+ L H +IH G
Sbjct: 2 SSGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 27.9 bits (63), Expect = 0.78
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K +C+ C K F + H RIH
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
AG K + C+ C+K+F + + L HQ H+ +K + G
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP-SSG 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + KK+F C C K+F + L +H R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S ++C+ C K F L H +IH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C KTF S L H+ H P S+
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ LF+C++C K+FT+ +L H + IH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
Score = 29.0 bits (66), Expect = 0.32
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F ++ H RIH
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.50
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K SL H +IH G K
Sbjct: 3 SGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 42.1 bits (100), Expect = 6e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K + CE CG F+ L H+R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIH 158
PY C C F++ L H++IH
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIH 34
Score = 37.1 bits (87), Expect = 4e-04
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
G K Y C+IC F L H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C++C F L ++ H+RIH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.1 bits (74), Expect = 0.020
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNY 193
C++C +++LK H++IH G
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 28.2 bits (64), Expect = 0.53
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 267 HMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P + C C F L+ H++ IH
Sbjct: 2 SSGSSGGEKP-YPCEICGTRFRHLQTLKSHLR-IH 34
Score = 25.9 bits (58), Expect = 3.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 109 SCDICDKTFVNKSHLDYHKLSH 130
C+IC F + L H H
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIH 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.2 bits (100), Expect = 6e-06
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K C C K+F K+ LI HQ TH D K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K C CGK+F K L +H RTH K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 36.8 bits (86), Expect = 5e-04
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S P +C+ C K F K +L H + H D K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 33.7 bits (78), Expect = 0.007
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K F KS L H+ +H D S+
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 29.4 bits (67), Expect = 0.23
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 277 FECHDCHKSFTRKDNLERH 295
+C +C K+F K L H
Sbjct: 13 CKCTECGKAFCWKSQLIMH 31
Score = 28.7 bits (65), Expect = 0.41
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K +C C K F + H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+G K++ CD C K+F + L HQ H +K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.7 bits (91), Expect = 9e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K C+ CGK+F L +H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 34.1 bits (79), Expect = 0.004
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S + C C K F L H ++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 29.5 bits (67), Expect = 0.18
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
C +C K+F L H + +H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 27.2 bits (61), Expect = 1.5
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
S K C C K + +L+ H ++H G K
Sbjct: 3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
CD C K F S L H+ H S
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 7e-06
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y C+ C K + K +L HQ H+ ++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + CE CGK + K++L +H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C KG+ +K L+ H K+H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K + +K +LD H+ H P S+
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 32.1 bits (74), Expect = 0.019
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C C K + K NL+ H + +H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C+ C K + + N+ H ++H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 27.5 bits (62), Expect = 0.90
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C+ C K S +L H K+H G +
Sbjct: 3 SGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 7e-06
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C+ C K+F + + L +HQ H+ +K + G
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP-SSG 46
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + K + C CGK+F + LA H R H K
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F KL RH ++H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 31.0 bits (71), Expect = 0.064
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K+F++ L RH + +H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
Score = 30.6 bits (70), Expect = 0.081
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S L H+ H P S
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.27
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA L +H ++H G K
Sbjct: 3 SGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.33
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K +QC C K F + RH R+H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C K+F ++ L HQ H+ KK
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ + +K + C CGK+F + L H H K
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PYEC+ C K F + L H IH+ K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC+ C K+F+ + +L H ++IH
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
Score = 31.3 bits (72), Expect = 0.037
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA SL H IH G K
Sbjct: 2 SSGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 31.0 bits (71), Expect = 0.061
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F +S L H+ H P S
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 28.3 bits (64), Expect = 0.45
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F ++ H IH
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C+ C K F + + L HQ H+ K +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK F + LA H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L H +IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K FT+ +L H + IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIH 35
Score = 32.1 bits (74), Expect = 0.023
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F SHL H+ H + P S+
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.28
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L H +IH G+K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 28.6 bits (65), Expect = 0.40
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ H RIH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C+ C K+F + + L +HQ H+ +K + G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP-SSG 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK+F + LA H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F KL RH +IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 32.9 bits (76), Expect = 0.013
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K+F++ L RH + IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIH 35
Score = 30.6 bits (70), Expect = 0.084
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S L H+ H P S
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.087
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA L +H +IH G K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.33
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F + RH RIH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G Y C C K+F K LI HQ TH+ +K
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + + C CGK+F RKY L H RTH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERH 295
+ECH+C K+F+RK L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S NPYEC C K F K +L H + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 30.9 bits (71), Expect = 0.051
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K F K L H+ +H P S+
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.35
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ E C C KA L H + HAG K
Sbjct: 2 SSGSSGTGENPYE---CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.65
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ ++C C K F + + H R H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 41.4 bits (98), Expect = 9e-06
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
G K Y CD C K+F +K LI H H+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K + C+ CGK+F +K L +HIR H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PY C C K F KG L H+++H+ S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C C K+F++K +L H +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
Score = 30.2 bits (69), Expect = 0.099
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F ++ H+R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 27.9 bits (63), Expect = 0.56
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY 193
K + C C KA SL H+++H G
Sbjct: 2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPY 136
CD C K F K L H H P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 9e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K F C+ CG +F L H+R+H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 37.2 bits (87), Expect = 4e-04
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
G K + C C +F L KH +H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S P++C C F L +H++ H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K FQCK C F ++ +H+R H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCD 196
CK C SL KH++ H
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 29.5 bits (67), Expect = 0.21
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P F+C +C +F+ +L +H++ H
Sbjct: 3 SGSSGTGEKP-FQCKECGMNFSWSCSLFKHLR-SH 35
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C F L H SH+ +P S+
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
+G + Y C+ C K+F + LI+H H +K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ S ++ + C CGK+F R L H++ HF K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S PY C+ C K F L H+K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 32.1 bits (74), Expect = 0.022
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+RP + C++C K+F R +L H+K H
Sbjct: 3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLK-RH 35
Score = 31.7 bits (73), Expect = 0.029
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F SHL H H S+
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S + + C C K L +H+K H K+
Sbjct: 3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K + C C K F ++ L H H+ +K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K F C CGK F R+ L +H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C KGF + LN H K+H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 32.1 bits (74), Expect = 0.024
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C +C K F+R+ L H +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
Score = 31.7 bits (73), Expect = 0.031
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F +S L+ H H P S
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F + H ++H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K +L H K+H G K
Sbjct: 2 SSGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 43.0 bits (100), Expect = 1e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 247 KRFQCKLCDKIFF-TLHNMRRHMRI-HKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDP 304
C C+ + TL +++HM + K + +C C K F K L H + H P
Sbjct: 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Query: 305 S 305
S
Sbjct: 83 S 83
Score = 31.5 bits (70), Expect = 0.15
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 80 YKCLKCKRQF-KVKYNCKYHIH-CTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
C C K K H+ C L+ L C C K F +K+ L+YH ++ P
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 31.1 bits (69), Expect = 0.18
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 105 KAKLSCDICDKTFVNKS--HLDYH-KLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
+ + C C K+ L H ++ + + +C +C K FK+K LN H +
Sbjct: 22 RGEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 162 K 162
K
Sbjct: 81 K 81
Score = 29.5 bits (65), Expect = 0.69
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 191 KNYHCDICEKSFIEKN--DLIKH-QVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
C C K L KH +V + C++C K FK K L H
Sbjct: 23 GEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 28.4 bits (62), Expect = 1.5
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 136 YECSNCHK-GFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKH-MKIHAGLK 191
C C+ K L +HM++ ++ C+ C K S L H M H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 27.2 bits (59), Expect = 3.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 79 MYKCLKCKRQFKVKYNCKYHI 99
KC C++QFK K YH
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHT 74
Score = 26.8 bits (58), Expect = 5.8
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 216 SDKKIFVCENCGKSFKRKYD-LALHIRT-HFPLKRFQCKLCDKIFFTLHNMRRH-MRIHK 272
++ VC C ++ L H+ +C+ C K F + + H M H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 273 DRP 275
+P
Sbjct: 80 AKP 82
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
+G K + C CEK+F K+ L+ HQ TH+++K +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 36.4 bits (85), Expect = 8e-04
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
S +K F C C K+F K L +H +TH K
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C+K F +KS+L H+ +H + P S+
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
P+ CS C K F +K L H + H+
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 28.7 bits (65), Expect = 0.37
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 277 FECHDCHKSFTRKDNLERH 295
F C C K+F+ K L H
Sbjct: 11 FGCSCCEKAFSSKSYLLVH 29
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K++ C C K+F K+ L HQ H+ +K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 8e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + K F C CGK+F RK L++H + H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S +EC+ C K F K L+ H KIH
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
FEC +C K+FTRK L H K IH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IH 35
Score = 31.3 bits (72), Expect = 0.041
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F KS L H+ H P S
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.23
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K F + H +IH
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 28.6 bits (65), Expect = 0.43
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA +L H KIH G K
Sbjct: 2 SSGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + CE+CGK + R+ +L +H R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+ K Y C+ C K + + +L HQ H +K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C +C KG+ + L+ H ++H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C DC K + R+ NL+ H + +H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
Score = 30.9 bits (71), Expect = 0.051
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K + + +LD H+ H S+
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 28.2 bits (64), Expect = 0.55
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C+ C K +L H ++H G K
Sbjct: 3 SGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
AG+ Y C CEKSF K L+ HQ H+ +K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + C C KSF K L +H R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S +NPY+CS C K F K +L H ++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C+K+F K L H+ H P S
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + ++C C+K F + H R+H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 29.0 bits (66), Expect = 0.30
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERH 295
++C C KSF+ K L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C K F + + L +H+ H+ +K
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK F + LA H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L RH IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 31.3 bits (72), Expect = 0.038
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K FT+ +L RH + IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 30.9 bits (71), Expect = 0.050
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F SHL H+ H P S
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ RH IH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.9 bits (63), Expect = 0.74
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H IH G K
Sbjct: 3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y CD+C K F + + L HQ H+ +K +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ +K + C+ CGK F + L H R H K
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
CD+C K F SHL H+ H P S+
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.018
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S Y+C C K F L H ++H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.0 bits (71), Expect = 0.061
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C C K F++ +L+ H + +H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
Score = 29.0 bits (66), Expect = 0.24
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C +C K F +++ H R+H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
K + C VC K L+ H ++H G K
Sbjct: 3 SGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G Y C C K F K+ L+ HQ THS +
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + + C CGK F RK L H +TH
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/37 (40%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S NPYEC C K F K +L H K HS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 31.3 bits (72), Expect = 0.046
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERH 295
+ P +EC +C K F+RKD L H
Sbjct: 3 SGSSGTGENP-YECCECGKVFSRKDQLVSH 31
Score = 28.6 bits (65), Expect = 0.32
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C C K F K L H+ +H +
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+G K + C+ C K F + + L HQ H+ +K
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K F CE CGK F + L H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C +C K FT+ L H + +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 32.5 bits (75), Expect = 0.016
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C K F +L+ H ++H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.1 bits (74), Expect = 0.025
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S L H+ H P S
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C+ C K L H ++H G K
Sbjct: 2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C+ C K F + H R+H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G + + C+ C KSFI+ LI+HQ H+ +K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + ++ C CGKSF + L H R H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 266 RHMRIHK-DRPLFECHDCHKSFTRKDNLERH 295
+RP +C++C KSF + +L +H
Sbjct: 2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQH 31
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C+ C K F L +H +IH
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.9 bits (71), Expect = 0.051
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K+F+ +HL H+ H P S
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.46
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ + C C K+ + L +H +IH G K
Sbjct: 2 SSGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.57
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + +C C K F ++ +H RIH
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G + + C C K F++ ++ I+H+ H+ +K
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ ++ C +CGK F + + H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 36.7 bits (86), Expect = 6e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S + CS+C K F +H +IH
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 31.7 bits (73), Expect = 0.032
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 266 RHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+R C DC K F + N +H + IH
Sbjct: 2 SSGSSGHGERG-HRCSDCGKFFLQASNFIQH-RRIH 35
Score = 27.9 bits (63), Expect = 0.80
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F+ S+ H+ H P S
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C K + + +H +IH G K
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y+C C KSF L+KH+ HS +K +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K++ C+ CGKSF R L H R H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S Y C C K F L +H ++HS K
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEK 39
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
L+ C +C KSF+R L +H + +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K+F L H+ H P S+
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + CK C K F + +H R+H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + CK C K+ L KH ++H+G K
Sbjct: 3 SGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C K F + + L +H+ H+ K
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK F + LA H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 125 YHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L RH ++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 31.7 bits (73), Expect = 0.029
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F SHL H+ H P S
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 31.0 bits (71), Expect = 0.054
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K FT+ +L RH + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
Score = 28.6 bits (65), Expect = 0.40
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ RH R+H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.5 bits (62), Expect = 0.88
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H ++H G K
Sbjct: 3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K + C C K+F + L +H+ H+ +K
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K F C +CGK+F L H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C +C K F + LN+H +IH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 32.1 bits (74), Expect = 0.019
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C DC K+F+ L +H + IH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
Score = 31.3 bits (72), Expect = 0.039
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F + L+ H+ H P S
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.066
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F C C K F + +H RIH
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA L +H +IH G K
Sbjct: 3 SGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G+K Y C+ C K+F + L HQV H+ +K
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + K ++C CGK+F L H H K
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S + PY C+ C K F L H IH
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C++C K+F+ +L H + IH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
Score = 31.3 bits (72), Expect = 0.041
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA SL H IH G K
Sbjct: 2 SSGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S L H++ H P S
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.36
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ +K + C C K F ++ H IH
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y+C C KSF + L+KHQ HS +K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ + +K + C+ CGKSF+ L H R H K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 0.003
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PY C C K F+ L +H ++HS K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + CK C K+ L KH ++H+G K
Sbjct: 2 SSGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 32.2 bits (74), Expect = 0.021
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C +C KSF L +H + +H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 29.8 bits (68), Expect = 0.13
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K+F S L H+ H P S
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 29.5 bits (67), Expect = 0.20
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + CK C K F + +H R+H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 247 KRFQCKLCDKIFF-TLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPS 305
C C + T+ +++HM K F CH C K ++ HV + H PS
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 306 ENT 308
+
Sbjct: 92 GPS 94
Score = 28.7 bits (63), Expect = 1.3
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 136 YECSNCHK-GFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKH-MKIHAGLK 191
C C G K L +HM+ +E + C C K L S+ +K H M H L
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCK--QEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 27.5 bits (60), Expect = 2.8
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 80 YKCLKCKR-QFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
C C+ K K H+ + +C C K + + + YH +++ + P
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 27.1 bits (59), Expect = 3.6
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
+ C C+ + + +K + + +++F C +CGK + + H+
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
Score = 26.4 bits (57), Expect = 9.0
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 105 KAKLSCDICDK-TFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRH-MKIHSD 160
K +SC C L H + + + C +C K ++ + H M H+
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANHNS 88
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C C K+F + LI+HQ H+ +K + G
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP-SSG 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C+ CGK+F + L H R H K
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PYEC C K F L +H ++H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+EC +C K+F++ +L +H + +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
Score = 30.6 bits (70), Expect = 0.089
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F +HL H+ H P S
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 153 RHMKIHSDSK--EQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K E CK C KA L +H ++H G K
Sbjct: 2 SSGSSGTGEKPYE---CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++CK C K F ++ +H R+H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K + C C KS+ ++ L +HQ H+ +K
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 7e-05
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K F C CGKS+ ++ L H R H K
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C +C KS+ ++ +L +H + +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C K + + L +H ++H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K++ + HL H+ H P S+
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 29.4 bits (67), Expect = 0.18
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C K + ++ +H R+H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.6 bits (65), Expect = 0.42
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K+ L +H ++H G K
Sbjct: 2 SSGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C C K+F +K +L +HQ H+ +K + G
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP-SSG 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK+F +K +L H R H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY C C K F K L +H +IH
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 33.2 bits (77), Expect = 0.008
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ C +C K+F +K NL +H + IH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
Score = 30.9 bits (71), Expect = 0.063
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F K++L H+ H P S
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F N+ +H RIH
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 28.6 bits (65), Expect = 0.36
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA +L +H +IH G K
Sbjct: 2 SSGSSGTGEKP-YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K Y CD+C KSF + L HQ H+ +K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C+ C KSF+ L +H R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C CHK F+ L H +IH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
CD+C K+F S L H+ H P S
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.053
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C CHKSF +L H + IH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
Score = 29.4 bits (67), Expect = 0.18
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C +C K F ++ H RIH
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.0 bits (66), Expect = 0.32
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C VC+K+ SL H +IH G K
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 40.7 bits (95), Expect = 2e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNC 141
+C+IC K F + HL+ HKLSH PY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.9 bits (93), Expect = 4e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC 254
+ +K CE CGK F+ Y L H +H K +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.2 bits (91), Expect = 8e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENC 226
K C+IC K F + L +H+++HS +K +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.8 bits (77), Expect = 0.006
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDC 282
+ K+ C++C KIF ++++ RH H +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.008
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S + C C K F++ LNRH HS K
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 31.8 bits (72), Expect = 0.027
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDIC 198
C++C K V L +H H+G K Y
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.8 bits (64), Expect = 0.42
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 269 RIHKDRPLFECHDCHKSFTRKDNLERHVKS 298
+ R C C K F +L RH S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C K+F ++L HQV H+ +K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 7e-04
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK+F+ +L H H K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F+ L H IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K+F NL H + IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F S+L H++ H P S
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F N+ H IH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA + +L H IH G K
Sbjct: 3 SGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C +C K+F + L++H HS ++ +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 36.0 bits (84), Expect = 0.001
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C+ CGK+F+ L H H +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 32.5 bits (75), Expect = 0.017
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S PY+C C K F+ L +H +HS +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 32.1 bits (74), Expect = 0.021
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C C K+F +L +H S+H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
Score = 31.7 bits (73), Expect = 0.030
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C +C K F SHL H H P S+
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 31.3 bits (72), Expect = 0.048
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C+VC KA L +H +H+G +
Sbjct: 2 SSGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 28.6 bits (65), Expect = 0.34
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C++C K F ++ +H +H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 64/461 (13%), Positives = 117/461 (25%), Gaps = 127/461 (27%)
Query: 12 VCSESRLVQDSCGHI------KCR-----------MCLLSDSTQCYLCWQKNEHASFIIE 54
VC ++ I C + D +++H+S I
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT----SRSDHSSNIKL 225
Query: 55 APESDKDEK---FTIPDYIQVIPGEPVMYKCL---------KCKRQFKVKYNCK------ 96
S + E Y CL K F + CK
Sbjct: 226 RIHSIQAELRRLLKSKPYE----------NCLLVLLNVQNAKAWNAFNLS--CKILLTTR 273
Query: 97 -------------YHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQ--DLNPYECSNC 141
HI L+ D + L + NP S
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 142 HKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKAL-MSVESLKKHMKIHAGLKNYHCDICEK 200
+ R D+ + C + S+ L+ A + +
Sbjct: 334 -------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDRL--- 378
Query: 201 SFIEKNDLIKHQV--------THSDKKIFVCENCGKS--FKRKYDLALHIRTHFPLKRFQ 250
S + I + SD + V + S K+ + + I +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELK 436
Query: 251 CKLCDKIFFTLHN-MRRHMRIHKDRPLFECHDCHKSFTRKDN-----LERHVKSIHLEDP 304
KL ++ + LH + H I K F+ D D + H+K+I +
Sbjct: 437 VKLENE--YALHRSIVDHYNIPKT---FDSDDLIPP--YLDQYFYSHIGHHLKNIEHPER 489
Query: 305 SENTNTINGHLA-IEPKEDRINGIEPRESKIIGILA--------IEPKESIDEIVANELK 355
+ +E K + I+ L I + E + N +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 356 QSSSNGLLPIEPAPKSSYQNCVRNGSPEKVQVPFNNKVSVI 396
+ L IE +N + + + +++ + I
Sbjct: 550 ----DFLPKIE-------ENLICSKYTDLLRIALMAEDEAI 579
Score = 43.7 bits (102), Expect = 1e-04
Identities = 62/451 (13%), Positives = 127/451 (28%), Gaps = 115/451 (25%)
Query: 2 EQCPQCKGLVVCSESRLVQD-SCGHIKCRMCLLSDSTQCYLCWQKNEHASFIIEAPESDK 60
E Q K ++ E V + C + D + L E II + ++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDV-------QDMPKSIL---SKEEIDHIIMSKDAVS 62
Query: 61 D----------------EKFTI----PDY------IQVIPGEP----VMYKCLKCKRQFK 90
+KF +Y I+ +P MY + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 91 VKYNCKYHI----HCTSLKAKLSCDI------------CDKT-FVNKSHLDYHKLSHQDL 133
+ KY++ L+ L KT L Y D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 134 NPY-----ECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHA 188
+ C++ + KL + D + + + S++ ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 189 GLKNY-HC-----DICEKSFIEKNDL-IKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
K Y +C ++ +L K +T K++ L+
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT------------DFLSAATT 286
Query: 242 THFPLKRFQCKLCDK----IFFTLHNMRRHM---RIHKDRPLF------ECHD--CHKSF 286
TH L L + + R + P D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 287 TRKDNLERHVK----SIHLEDPSENTNTINGHLAIEPKEDRINGIEPRESKIIGILAIEP 342
+ N ++ S+++ +P+E + L++ P I P + ++ ++ +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHI----P--TILLSLIWFDV 399
Query: 343 KESIDEIVANELKQSSSNGLLPIEPAPKSSY 373
+S +V N+L + S L+ +P +
Sbjct: 400 IKSDVMVVVNKLHKYS---LVEKQPKESTIS 427
Score = 37.5 bits (86), Expect = 0.009
Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 25/153 (16%)
Query: 262 HNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKE 321
H+ HM D E +K + V + +D + +I + +E
Sbjct: 1 HHHHHHM----DFETGEHQYQYKDIL-SVFEDAFVDNFDCKDVQDMPKSI-----LSKEE 50
Query: 322 -DRINGIEPRESK---IIGILAIEPKESIDEIVANELKQS-----SSNGLLPIEPAPK-- 370
D I + S + L + +E + + V L+ + S +P+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 371 --SSYQNCVRNGSPE--KVQVPFNNKVSVIQRV 399
++ + N + K V +++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ S ++ F C CGK F R+ LA H+R H K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
+G + + C+ C K F ++ L H HS +K +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S P++C+ C KGF + L H+++HS
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F +SHL H H S+
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 30.6 bits (70), Expect = 0.084
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 266 RHMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+RP F+C++C K F R+ +L H +H
Sbjct: 2 SSGSSGSGERP-FKCNECGKGFGRRSHLAGH-LRLH 35
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ + F+C C K F ++ H+R+H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 26.7 bits (60), Expect = 2.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C K L H+++H+ K+
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C+ C K F + L +HQ H+ +K +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK F R L+ H + H K
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S Y+C+ C K F +L++H KIH
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K F+R L +H + IH
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
Score = 30.6 bits (70), Expect = 0.069
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H KIH G K
Sbjct: 2 SSGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.086
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F S L H+ H P S+
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.28
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ KR++C C K+F + +H +IH
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+G K + C+ C K F + + L HQ H+ +K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 8e-05
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ S +K F CE CGK F + L H R H K
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.009
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C K F L+ H ++H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 32.9 bits (76), Expect = 0.012
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C+ C K F SHL H+ H P S+
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.018
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C +C K FT+ +L H + +H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K FQC+ C K F ++ H R+H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.54
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C+ C K L H ++H G K
Sbjct: 2 SSGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.3 bits (95), Expect = 3e-05
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
K+Y+C+ C K+F L +HQ H+ K
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 39.5 bits (93), Expect = 4e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +D K + C CGK+F R + L H + H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 36.0 bits (84), Expect = 9e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S D Y C+ C K F L RH KIH+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
D + C++C K+FTR +L RH K IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQK-IH 35
Score = 31.4 bits (72), Expect = 0.036
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K + C C K F + ++ RH +IH
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 27.9 bits (63), Expect = 0.59
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+DSK + C C KA + L +H KIH
Sbjct: 3 SGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 25.6 bits (57), Expect = 3.9
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C+ C K F HL H+ H +
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+G Y C C K+F K+ LI HQ TH+ +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 212 QVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
S + + C CGK+F RK L H RTH
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PYECS C K F K +L H + H+
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHA 34
Score = 29.8 bits (68), Expect = 0.16
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
C C K F K L H+ +H +
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.19
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 277 FECHDCHKSFTRKDNLERH 295
+EC +C K+F RKD L H
Sbjct: 11 YECSECGKAFNRKDQLISH 29
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C KA + L H + HAG
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
+G K + C C K+F + L H H+ +K + G
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP-SSG 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ S +K F C+ CGK+F++ LA H+R H K
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
F+C +C K+F + +L H IH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S P++C C K F+ L H++IH
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 30.9 bits (71), Expect = 0.064
Identities = 10/30 (33%), Positives = 10/30 (33%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F HL H H P S
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.065
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+CK C K F ++ H+RIH
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + CK C KA L H++IH G K
Sbjct: 2 SSGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 40.2 bits (94), Expect = 3e-05
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
AG + C C++ F ++N L++H+ TH+ K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 37.5 bits (87), Expect = 2e-04
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
S NP++CS C + F + L +H + H+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 36.8 bits (85), Expect = 5e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + F C C + F ++ L H RTH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 29.8 bits (67), Expect = 0.12
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRP 275
+ F+C CD++F + + +H R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 28.3 bits (63), Expect = 0.51
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
F+C C + FT+++ L +H + H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHER-TH 35
Score = 26.4 bits (58), Expect = 2.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 110 CDICDKTFVNKSHLDYHKLSH 130
C CD+ F +++L H+ +H
Sbjct: 15 CSKCDRVFTQRNYLVQHERTH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C+ C K F + + L +H+ H+ +K + G
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP-SSG 46
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + KK + C CGK F + LA H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L RH IH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 31.7 bits (73), Expect = 0.027
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ ++C++C K FT+ +L RH + IH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 31.3 bits (72), Expect = 0.040
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F SHL H+ H P S
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.22
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ RH IH
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 28.2 bits (64), Expect = 0.56
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H IH G K
Sbjct: 3 SGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCG 227
G K Y C+ C K F + + L++H+ H+ +K + G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP-SSG 46
Score = 36.3 bits (85), Expect = 7e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + +K + C CGK F + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 33.2 bits (77), Expect = 0.010
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L RH IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 32.8 bits (76), Expect = 0.011
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K FT+ +L RH + IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIH 35
Score = 30.9 bits (71), Expect = 0.067
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F SHL H+ H P S
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H IH G K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.53
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ RH IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C+ C K F + L +HQ H+ +K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK F+ L+ H R H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F++ L+RH +IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K F L RH + IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 31.3 bits (72), Expect = 0.046
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F + S+L H+ H P S
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F + RH RIH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H +IH G K
Sbjct: 2 SSGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+G K Y C C K+FI+ L +H+ H+ ++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 39.8 bits (94), Expect = 5e-05
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCK 252
+ S KK + C+ C K+F + L H R H +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S PYEC C K F G LN+H ++H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C KTF+ HL+ HK H S
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIHL-EDPSE 306
+ +EC +C K+F + +L +H K +H E S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSG 42
Score = 28.3 bits (64), Expect = 0.44
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
CK C K + + L +H ++H G ++
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 28.3 bits (64), Expect = 0.46
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++CK C K F + ++ +H R+H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCEN 225
G K Y C C KSF L +H +TH+ +K +
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 39.1 bits (92), Expect = 8e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K + C CGKSF Y L H TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S + PY+CS C K F +L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 32.9 bits (76), Expect = 0.013
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSN 140
C C K+F L H ++H P S+
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 267 HMRIH-KDRPLFECHDCHKSFTRKDNLERHVKSIHL-EDPSE 306
++P ++C +C KSF+ L +H H E PS
Sbjct: 3 SGSSGEGEKP-YQCSECGKSFSGSYRLTQH-WITHTREKPSG 42
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C C K+ L +H H K
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K +QC C K F + + +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S ++C C +GF K LN+H +IH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 39.1 bits (92), Expect = 8e-05
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+ K++ C C + F K+ L +HQ H+ +K
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S K C CG+ F K L H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 30.2 bits (69), Expect = 0.091
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C + F KSHL+ H+ H P S
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+CH+C + FT K +L +H + IH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K QC C + F ++ +H RIH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.9 bits (94), Expect = 4e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C C K+F + + +HQ H+ ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK+F H R H +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C K F + +H ++H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 30.6 bits (70), Expect = 0.075
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C KA S +H ++H G +
Sbjct: 3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F + S H+ H P S
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 29.9 bits (68), Expect = 0.16
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C +C K+F + +H + +H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
Score = 29.5 bits (67), Expect = 0.18
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F + +H R+H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.0 bits (92), Expect = 7e-05
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K + CE CG F + L H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 39.0 bits (92), Expect = 7e-05
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
G K Y C+ C F++ L H + H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C F L H+ IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 36.3 bits (85), Expect = 7e-04
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C+ C F + ++R H+ IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 30.6 bits (70), Expect = 0.081
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY 193
K + C+ C + V L+ H+ IH G
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 30.6 bits (70), Expect = 0.081
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 267 HMRIHK-DRPLFECHDCHKSFTRKDNLERHVKSIH 300
++P ++C C F + +L HV IH
Sbjct: 2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVL-IH 34
Score = 29.0 bits (66), Expect = 0.27
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPY 136
C+ C FV +HL H L H P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 7e-05
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K + C C F + L LH H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
G K + C C+ F + + L HQ H +K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S ++C C F L H +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 32.9 bits (76), Expect = 0.012
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C CD F S L H+ H P S
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.099
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C+ CD F ++R H +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C +C F++ +L H +++H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 28.3 bits (64), Expect = 0.48
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHC 195
C+ C+ SL+ H +H G K
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 39.1 bits (92), Expect = 8e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQ-VTHSDKKIFVC 223
G K Y C C K+FI+ LI+H H+ +K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 267 HMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
+ +EC +C K+F + +L RH + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 34.1 bits (79), Expect = 0.005
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRT 242
+ + KK + C CGK+F + L H R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
Score = 31.0 bits (71), Expect = 0.063
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIH 158
S PYEC C K F L RH H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 27.9 bits (63), Expect = 0.64
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 110 CDICDKTFVNKSHLDYH-KLSHQDLNPYECSN 140
C C K F+ + L H + H P S+
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 25.6 bits (57), Expect = 4.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMR-IH 271
+ K ++C C K F ++ RH R H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 8e-05
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+G K Y C+ C K F + + L H H+ +K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + C CGK F + L H R H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C++C K FT+ +L H IH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
Score = 33.2 bits (77), Expect = 0.009
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C+ C K F L H +IH
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C+ C K F SHL H H P S
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C C K L H +IH G K
Sbjct: 2 SSGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.43
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ H RIH
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 38.8 bits (91), Expect = 8e-05
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY C C K F +G L H + S S
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 38.4 bits (90), Expect = 1e-04
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
G Y C C KSF ++ L HQ + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 38.4 bits (90), Expect = 1e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + ++C CGKSF ++ LA+H R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 28.4 bits (64), Expect = 0.47
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+ C C KSFT++ +L H +
Sbjct: 12 YLCGQCGKSFTQRGSLAVH-QRSC 34
Score = 24.9 bits (55), Expect = 6.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 110 CDICDKTFVNKSHLDYHKLSH 130
C C K+F + L H+ S
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSC 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 39.1 bits (91), Expect = 9e-05
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 209 IKHQVTHSDKKIFVC--ENCGKSFKRKYDLALHIRTH 243
I V K F C C K+FKR+Y++ HI+TH
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 32.9 bits (75), Expect = 0.013
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 276 LFEC--HDCHKSFTRKDNLERHVKSIHLED 303
FEC C K+F R+ N+ H+++ HLED
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQT-HLED 46
Score = 27.5 bits (61), Expect = 0.96
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 245 PLKRFQCKL--CDKIFFTLHNMRRHMRIH-KDR 274
P K F+C C K F +N+R H++ H +DR
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
+G K Y C C K+F L +H+ H+ +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ S +K + C CGK+F R L H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+CS C K F LN H +IH
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 33.2 bits (77), Expect = 0.009
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++C +C K+F R +L H + IH
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIH 35
Score = 30.9 bits (71), Expect = 0.066
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F +HL+ H+ H P S
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
S K + C C KA L +H +IH G +
Sbjct: 2 SSGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K F ++ H RIH
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 38.5 bits (90), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 211 HQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ K F C +C +SF R LALH + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.8 bits (83), Expect = 8e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 183 HMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTH 215
+ G+K + C C++SF + L H+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 35.0 bits (81), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 267 HMRIHK-DRPLFECHDCHKSFTRKDNLERHVK 297
R +P F+C DC +SF+R D+L H K
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRK 32
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
R +K FQC CD+ F ++ H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (69), Expect = 0.075
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
+ P++C +C + F L H K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.3 bits (61), Expect = 0.89
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 154 HMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIH 187
+ + K + C C+++ + L H K H
Sbjct: 2 STRGSTGIK-PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.4 bits (56), Expect = 5.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 110 CDICDKTFVNKSHLDYHKLSH 130
C CD++F HL H+ H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE 224
G K Y C C K F + L +HQ+ H+ +K
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 210 KHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQC 251
+ + +K + C CGK F+R LA H H K
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 266 RHMRIHKDRPLFECHDCHKSFTRKDNLERHVKSIH 300
++CH+C K F R +L RH + IH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 126 HKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S PY+C C K F+ L RH IH
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 31.7 bits (73), Expect = 0.029
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
C C K F SHL H+L H P S
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.094
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 153 RHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHC 195
+ K + C C K L +H IH G K
Sbjct: 2 SSGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 237 ALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K ++C C K+F ++ RH IH
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.0 bits (90), Expect = 3e-04
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 175 MSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVT-HSD---KKIFVCENCGKSF 230
M+ + + Y C C + N H + H + +VC C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 231 KRKYDLALHIRTHFP 245
KR L+ H + P
Sbjct: 61 KRYDALSEHNLKYHP 75
Score = 37.8 bits (87), Expect = 9e-04
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 239 HIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRI-HKD---RPLFECHDCHKSFTRKDNLER 294
+ + ++CK C L+ H+ H + + C +C+ R D L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 295 HVKSIHLEDPS 305
H H + +
Sbjct: 69 HNLKYHPGEEN 79
Score = 34.7 bits (79), Expect = 0.010
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 121 SHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHM-KIHSDSKEQ--WFCKVCNKALMSV 177
H +++ + + YEC C + H+ H + + C CN
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 178 ESLKKH-MKIHAGLKNYHCDI 197
++L +H +K H G +N+ +
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
YEC C K F+ KG L H +IH+ S
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH 243
S ++++ C+ CGKSF++K L LH R H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+G + Y C C KSF +K L H+ H+
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 29.5 bits (67), Expect = 0.17
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+EC +C KSF +K +L H + IH
Sbjct: 11 YECQECGKSFRQKGSLTLH-ERIH 33
Score = 25.2 bits (56), Expect = 5.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
+ ++C+ C K F ++ H RIH
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIH 33
Score = 25.2 bits (56), Expect = 5.5
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNY 193
C+ C K+ SL H +IH G
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 25.2 bits (56), Expect = 6.2
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPY 136
C C K+F K L H+ H P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.8 bits (83), Expect = 0.001
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K + C C ++F L H + H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 185 KIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+G K Y C C+++F + N L++HQ H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 34.2 bits (79), Expect = 0.003
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHS 159
PY C+ C + F + +L +H K+H+
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMHT 34
Score = 28.1 bits (63), Expect = 0.52
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+ C +C ++F+ + L +H K +H
Sbjct: 11 YSCAECKETFSDNNRLVQHQK-MH 33
Score = 26.5 bits (59), Expect = 1.8
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 241 RTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
K + C C + F + + +H ++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 25.7 bits (57), Expect = 4.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYEC 138
SC C +TF + + L H+ H +
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 0.002
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 195 CDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ + + T S + C C DL H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 39.1 bits (90), Expect = 0.003
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 7/77 (9%)
Query: 204 EKNDLIKHQVTHSDKKI-------FVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDK 256
N+L + ++ + E + T +QC +C
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSA 188
Query: 257 IFFTLHNMRRHMRIHKD 273
+ F+ ++ H+ H
Sbjct: 189 VLFSPLDLDAHVASHGL 205
Score = 36.8 bits (84), Expect = 0.015
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
+ + + Y+C C + L+ H+ H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 36.8 bits (84), Expect = 0.016
Identities = 7/53 (13%), Positives = 14/53 (26%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ + + + + Y C +C DL H +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 33.3 bits (75), Expect = 0.19
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 160 DSKEQWFCKVCNKALMSVESLKKHMKIH-----AGLKNYHCDICEKSFIE 204
S + C VC+ L S L H+ H L + FI
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFIS 225
Score = 31.7 bits (71), Expect = 0.56
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 107 KLSCDICDKTFVNKSHLDYHKLSHQD 132
C +C + LD H SH
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGL 205
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.4 bits (78), Expect = 0.003
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 216 SDKKIFVCENCGKSFKRKYDLALHIRTH 243
S KIF CE C K FK K+ L H+R H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 28.7 bits (63), Expect = 0.31
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 128 LSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
S + C C+K FK K L H++IH++ K
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.9 bits (61), Expect = 0.59
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 246 LKRFQCKLCDKIFFTLHNMRRHMRIH 271
K F C+ C+K+F H+++ H+RIH
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIH 32
Score = 26.0 bits (56), Expect = 3.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 190 LKNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K + C+ C K F K+ L H H+++K
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.004
Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 75/221 (33%)
Query: 258 FFTLHNMRRHMRIHKDRPLF----ECHDCHKSFTRKDNLERHVKSIHLEDPSENTNT--- 310
FF ++R+ + + LF C++ + + + ++ LED EN
Sbjct: 292 FFV--SVRKAITV-----LFFIGVRCYEAYPNTSLPPSI--------LEDSLENNEGVPS 336
Query: 311 ----ING--HLAIEPKEDRINGIEPRESKI-IG--------ILAIEPKE------SIDEI 349
I+ ++ ++ N P ++ I +++ P+ ++ +
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 350 VA-NELKQSS----------SNGLLPIEPAP-KSSYQNCVRNGSPE---KVQVPFNNKVS 394
A + L QS SN LP+ +P S + + K V FN K
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVA-SPFHSHLLVPASDLINKDLVKNNVSFNAK-- 453
Query: 395 VIQ-RVPVIMRATNQG------NKNISPKSNKINDSIFKQP 428
++PV T G + +IS +I D I + P
Sbjct: 454 --DIQIPVY--DTFDGSDLRVLSGSISE---RIVDCIIRLP 487
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 33.6 bits (76), Expect = 0.005
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHSDSK 162
+ PY C +C + F + G L RH++IH+ K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 5.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLK 191
+ C C + +L++H++IH G K
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.1 bits (54), Expect = 5.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 246 LKRFQCKLCDKIFFTLHNMRRHMRIH 271
+K + C C + F ++RH+RIH
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIH 26
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 33.4 bits (75), Expect = 0.009
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 130 HQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
PY C C FK K +++ H++ H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 33.0 bits (74), Expect = 0.014
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 271 HKDRPLFECHDCHKSFTRKDNLERHVKS----IHLEDPSE 306
+ C C F RKD + HV+S + PS
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
Score = 31.4 bits (70), Expect = 0.038
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
S +K + C CG FKRK ++ H+R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 26.4 bits (57), Expect = 2.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 109 SCDICDKTFVNKSHLDYHKLSHQ 131
SC +C F K + YH SH
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHD 34
Score = 26.0 bits (56), Expect = 4.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
+G K Y C +C F K+ + H +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 32.7 bits (75), Expect = 0.011
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
+ FVCE C ++F R+ L H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.4 bits (69), Expect = 0.071
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
+ F C++C + F +++RH R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.4 bits (69), Expect = 0.072
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 277 FECHDCHKSFTRKDNLERHVKS 298
F C C ++F R+++L+RH +S
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS 24
Score = 28.4 bits (64), Expect = 0.28
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
+ C C + F + L RH + H++ K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 1.5
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
+++ C++C ++F + L +H +H+++K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 2.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 110 CDICDKTFVNKSHLDYHKLSH 130
C++C + F + HL H SH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH 25
Score = 24.6 bits (54), Expect = 8.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLK 191
C+VC +A E LK+H + H K
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 32.2 bits (74), Expect = 0.014
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 221 FVC--ENCGKSFKRKYDLALHIRTH 243
F+C CGK F R +L H RTH
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.9 bits (68), Expect = 0.11
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 274 RPLFECH--DCHKSFTRKDNLERHVKSIH 300
RP F C C K FTR D L+RH + H
Sbjct: 1 RP-FMCTWSYCGKRFTRSDELQRHKR-TH 27
Score = 29.1 bits (66), Expect = 0.21
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 135 PYECS--NCHKGFKNKGKLNRHMKIHSDSK 162
P+ C+ C K F +L RH + H+ K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 247 KRFQC--KLCDKIFFTLHNMRRHMRIH 271
+ F C C K F ++RH R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 34.6 bits (78), Expect = 0.016
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 102 TSLKAKLSCDICDKTFVNKSHLDYHKLSH---QDLNPYECSNCHKGFKNKGKLNRHMKIH 158
+ + + C +C +++S H S + Y N + K
Sbjct: 27 SHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEI 86
Query: 159 SDSK-EQWFCKVCNKALMSVESLKKHM--KIHA 188
SD + C VCN S + H K H
Sbjct: 87 SDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHI 119
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 32.0 bits (72), Expect = 0.021
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 130 HQDLNPYECSNCHKGFKNKGKLNRHMKIHSDS 161
P+ C C F K RH+K+H+D+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 28.6 bits (63), Expect = 0.31
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 273 DRPLFECHDCHKSFTRKDNLERHVK 297
RP F C C +FT K N RH+K
Sbjct: 5 KRP-FVCRICLSAFTTKANCARHLK 28
Score = 28.2 bits (62), Expect = 0.46
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKD 273
F C++C F T N RH+++H D
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
Score = 24.7 bits (53), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 215 HSDKKIFVCENCGKSFKRKYDLALHIRTH 243
S K+ FVC C +F K + A H++ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 24.7 bits (53), Expect = 9.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHSD 217
+G + + C IC +F K + +H H+D
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 31.6 bits (72), Expect = 0.031
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 244 FPLKRFQCKLCDKIFFTLHNMRRHMRIHK 272
+P + + C C + F + + HM +H+
Sbjct: 2 WPPRSYTCSFCKREFRSAQALGGHMNVHR 30
Score = 26.6 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIH 158
Y CS C + F++ L HM +H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.4 bits (71), Expect = 0.032
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 277 FECHDCHKSFTRKDNLERHVKSIH 300
+ C C+++FTR+D L RH + IH
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIH 26
Score = 24.4 bits (53), Expect = 9.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQ 212
K Y C +C ++F ++ LI+H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHA 22
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 30.5 bits (68), Expect = 0.053
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSD 217
Y C +CE+SF+EK+ L +HQ H +
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 25.9 bits (56), Expect = 2.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSD 160
Y+C C + F K L+RH ++H +
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 25.1 bits (54), Expect = 5.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 249 FQCKLCDKIFFTLHNMRRHMRIHKD 273
++C LC++ F + RH R+HK+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.0 bits (77), Expect = 0.066
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQ 212
W+ + K L S+ H + G K + E+ DL
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
Score = 31.7 bits (71), Expect = 0.38
Identities = 9/118 (7%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 181 KKHMKIHAGLKNYHC-DICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALH 239
I Y D +++ + ++ + ++ + + +
Sbjct: 115 FFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIY---FRACRD 171
Query: 240 IRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLERHVK 297
IR L+ + + K ++ H + + + + ++L +
Sbjct: 172 IRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 30.6 bits (68), Expect = 0.81
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 184 MKIHAG--LKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
I G L+ ++ + K + H+ +K E + DL I
Sbjct: 170 RDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Query: 242 THFP 245
Sbjct: 230 LSVL 233
Score = 30.2 bits (67), Expect = 0.99
Identities = 7/53 (13%), Positives = 20/53 (37%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+++ E+ K +H KR Q + +++ ++R + +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 29.8 bits (66), Expect = 1.6
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 120 KSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIH 158
S H+ + + + N L + +
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 29.6 bits (67), Expect = 0.12
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 218 KKIFVC--ENCGKSFKRKYDLALHIRTH 243
KK +C + CGK + + L H+R H
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 29.7 bits (66), Expect = 0.13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 277 FECHDCHKSFTRKDNLERHVKS 298
F C C K F R D L +H+K+
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
Score = 27.8 bits (61), Expect = 0.68
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPL 246
F C C K F R L+ HI+T F +
Sbjct: 3 FACPACPKRFMRSDALSKHIKTAFIV 28
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 30.3 bits (68), Expect = 0.18
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 235 DLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFTRKDNLER 294
+ H T PL+ C+ CD ++ ++ H R C +C ++ KD L+
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTE-LCGNCGRNVLVKD-LKT 60
Query: 295 HVKS 298
H +
Sbjct: 61 HPEV 64
Score = 26.9 bits (59), Expect = 4.0
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 207 DLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRR 266
H+ T ++ VC++C L H + + C C + + +
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNV-----LVK 56
Query: 267 HMRIHKD 273
++ H +
Sbjct: 57 DLKTHPE 63
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.1 bits (65), Expect = 0.20
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 277 FECHDCHKSFTRKDNLERHVKS 298
F C +C K F R D+L H+
Sbjct: 3 FACPECPKRFMRSDHLTLHILL 24
Score = 27.6 bits (61), Expect = 0.77
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLK 247
F C C K F R L LHI H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.4 bits (58), Expect = 2.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ C C K F+ + L H + H +KK
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.2 bits (55), Expect = 4.1
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLK 191
C C K M + L H+ +H K
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENKK 29
Score = 24.5 bits (53), Expect = 8.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDR 274
+F C C K F ++ H+ +H+++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
Score = 24.5 bits (53), Expect = 9.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSDSK 162
+ C C K F L H+ +H + K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate;
VHS, FYVE, zinc finger, superhelix, transferase; HET:
CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2
g.50.1.1
Length = 220
Score = 32.4 bits (73), Expect = 0.22
Identities = 15/100 (15%), Positives = 23/100 (23%), Gaps = 5/100 (5%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCE---NCGKSFKRKYDLALHIRTHFPLK 247
H ++ K E H + + + E +F+ T LK
Sbjct: 75 APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILK 134
Query: 248 RFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSFT 287
+ D CH C FT
Sbjct: 135 AKGHTFPELREADAMFTADTAPNWADGR--VCHRCRVEFT 172
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.1 bits (65), Expect = 0.22
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 277 FECHDCHKSFTRKDNLERHVKS 298
F C +C K F R D+L +H+
Sbjct: 3 FACPECPKRFMRSDHLSKHITL 24
Score = 28.0 bits (62), Expect = 0.50
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 221 FVCENCGKSFKRKYDLALHIRTHFPLKR 248
F C C K F R L+ HI H L
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 26.0 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 167 CKVCNKALMSVESLKKHMKIHAGLKN 192
C C K M + L KH+ +H L
Sbjct: 5 CPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.9 bits (54), Expect = 6.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDKK 219
+ C C K F+ + L KH H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 32.3 bits (71), Expect = 0.25
Identities = 30/172 (17%), Positives = 45/172 (26%), Gaps = 13/172 (7%)
Query: 119 NKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWF-------CKVCN 171
KS H C CHKG +N MK +D+ C C+
Sbjct: 135 GKSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECH 194
Query: 172 KALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFK 231
L + ++ K + K C C + H K +
Sbjct: 195 TKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGE 254
Query: 232 RKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
+D +H+ F+C C F + C CH
Sbjct: 255 AYFDHDIHLSM------FKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCH 300
Score = 27.7 bits (59), Expect = 9.0
Identities = 24/165 (14%), Positives = 35/165 (21%), Gaps = 16/165 (9%)
Query: 122 HLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLK 181
SH+ P C N+ + ++ C C+ M+
Sbjct: 93 GAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGACHNDKMAFTVAG 152
Query: 182 KHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIR 241
K H G + K + H+ K C C A
Sbjct: 153 NCGKCHKG-MTPPKTVNFKMKGVADAAFSHEFHLGMYK---CNECHTKLFAYKAGAKRFT 208
Query: 242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCHKSF 286
K C C H +C CH
Sbjct: 209 MADMDKGKSCGAC------------HNGKDAFSSASDCGKCHPGL 241
Score = 27.3 bits (58), Expect = 9.7
Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 12/219 (5%)
Query: 105 KAKLSCDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQ 164
K +C IC + + + + C CH G K + + S
Sbjct: 26 KYNNNCRICHIALFDLRKPKRYTMLDME-KGKSCGACHTGMKAFSVADDSQCVRCHSGSA 84
Query: 165 WFCKVCNKALMSVESLKKHMKIHAGLKNYHCDIC-EKSFIEKNDLIKHQVTHSDKKIFVC 223
+ ++H + C C I + K C
Sbjct: 85 R---PVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSCGAC 141
Query: 224 ENCGKSFKRKYDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
N +F + + P K K + + H+ +++C++CH
Sbjct: 142 HNDKMAFTVAGNCGKCHKGMTPPKTVNFK-MKGVADAAFSHEFHL------GMYKCNECH 194
Query: 284 KSFTRKDNLERHVKSIHLEDPSENTNTINGHLAIEPKED 322
+ ++ NG A D
Sbjct: 195 TKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASD 233
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.6 bits (71), Expect = 0.27
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 23/147 (15%)
Query: 3 QCPQCKGLVVCSESRLVQDSCGHIKCRMCLL----SDSTQCYLCWQKNEHASFIIEAPES 58
+CP C + VQ CGH C+ C++ +C + +
Sbjct: 20 ECPICLMALR----EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL------------ 63
Query: 59 DKDEKFTIPDYIQVIPGEPVMYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFV 118
+++ F + I V C + ++++ + HC A + C C + F
Sbjct: 64 LENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHC--EFALMDCPQCQRPF- 120
Query: 119 NKSHLDYHKLSHQDLNPYECSNCHKGF 145
K H++ H L C NC
Sbjct: 121 QKFHINIHILKDCPRRQVSCDNCAASM 147
Score = 31.2 bits (70), Expect = 0.41
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 194 HCDICEKSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKL 253
C + ++ H + + C C + F++ + +HI P ++ C
Sbjct: 84 KCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDN 142
Query: 254 CDKIFFTLHNMRRHMRIHKDRPLFECHDCH 283
C + H + L H H
Sbjct: 143 CAAS-MAFEDKEIHDQN-CPLALEHHHHHH 170
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (64), Expect = 0.36
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDKK 219
K++ C C + F + LI+HQV H +K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.2 bits (54), Expect = 8.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 247 KRFQCKLCDKIFFTLHNMRRHMRIH 271
K QC+ C +IFF ++ H +H
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLH 35
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.42
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHSD 160
Y+C C + FKN+ +RHM +H D
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGD 34
Score = 26.6 bits (58), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 193 YHCDICEKSFIEKNDLIKHQVTHSDK 218
Y C ICE+ F + D +H + H DK
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGDK 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 30.5 bits (68), Expect = 0.46
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 22 SCGHIKCRMCL---LSDSTQCYLCWQKNEHASFIIEAPESDKDEKFTIPDYIQVIPGEPV 78
CGH+ C CL L ++ C C +K H + S D I
Sbjct: 31 ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGR 90
Query: 79 MYKCLKCKRQFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSH 122
+ +C F C + SLK +C C K +K +
Sbjct: 91 LIVSTECGHVF-----CSQCLR-DSLKNANTCPTCRKKINHKRY 128
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 30.2 bits (68), Expect = 0.58
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 182 KHMKIHAGLKNYHCDICEKSFIEK----NDLIKHQVTHSDKKIFVCENCGKSFKRKYDLA 237
H +I N E+ +E DLI+H + S+ F Y +
Sbjct: 71 LHTRIEH--SNGRFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGSATYPVR 128
Query: 238 LHIRTHFPLKRFQ 250
L T+ P+ RF
Sbjct: 129 L---TN-PVSRFM 137
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.7 bits (61), Expect = 0.65
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 219 KIFVCENCGKSFKRKYDLALHIRTH 243
K +VCE CGK F + LA HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.70
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 4 CPQCKGLVVCSESRLVQD-SCGHIKCRMC 31
CP+CK ++V+ S G + C +C
Sbjct: 24 CPECKV----YPPKIVERFSEGDVVCALC 48
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 27.5 bits (60), Expect = 0.83
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 133 LNPYECSNCHKGFKNKGKLNRHMKIHS 159
+ PY CS C K F K ++ H ++H+
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 25.1 bits (54), Expect = 5.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 246 LKRFQCKLCDKIFFTLHNMRRHMRIH 271
++ + C +C K F H M H R+H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 24.4 bits (52), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 221 FVCENCGKSFKRKYDLALHIRTH 243
+ C CGK F K+ + H R H
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVH 26
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.9 bits (59), Expect = 1.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 193 YHCDI--CEKSFIEKNDLIKHQVTHSDK 218
Y CD C+K+F+ +DLI+H+ +H +K
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 25.4 bits (55), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 221 FVCE--NCGKSFKRKYDLALHIRTH 243
+ C+ C K+F R +DL H ++H
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 24.6 bits (53), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 254 CDKIFFTLHNMRRHMRIHKDR 274
CDK F H++ RH + H+++
Sbjct: 11 CDKAFVRNHDLIRHKKSHQEK 31
Score = 24.6 bits (53), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 273 DRPLFECH--DCHKSFTRKDNLERHVKSIHLE 302
DRP + C C K+F R +L RH K H E
Sbjct: 1 DRP-YSCDHPGCDKAFVRNHDLIRH-KKSHQE 30
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 26.5 bits (58), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 140 NCHKGFKNKGKLNRHMKIHS 159
NC + F ++ KLNRH KIH+
Sbjct: 9 NCGRSFNDRRKLNRHKKIHT 28
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 218 KKIFVCENCGKSFKRKYDLALHIRTH 243
K C+ CGK F+ L H H
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALH 35
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQD 132
CD+C K F +K L HKL H
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTA 34
Score = 25.2 bits (54), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSD 217
K + CD+C K F K L H++ H+
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTA 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 27.2 bits (60), Expect = 1.8
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 2 EQCPQCKG-LVVCSESRLVQDSCGHIKCRMCL----LSDSTQCYLC 42
+ CP+CK +L+ + CGH C C+ + + C C
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPEC 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 178 ESLKKHMKIHAGLKNYHCD----ICEKSFIE 204
++LKK + A LK Y D + K+ +E
Sbjct: 20 QALKK---LQASLKLYADDSAPALAIKATME 47
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 28.8 bits (64), Expect = 2.3
Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 30/162 (18%)
Query: 81 KCLKCKR-----QFKVKYNCKYHIHCTSLKAKLSCDICDKTFVNKSHLDYHKLSHQDLNP 135
KC C++ + +H C C +C K + + +
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSC------FLCMVCKKNLDSTTVAVHGD------EI 56
Query: 136 YECSNCH-KGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNY- 193
Y C +C+ K + KGK + + + + S + A
Sbjct: 57 Y-CKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGS 115
Query: 194 -HCDICEKSFIEKNDLIKHQVTHSDKKI----FVCENCGKSF 230
C C ++ +V + K F C CGKS
Sbjct: 116 DGCPRCGQAVYAA-----EKVIGAGKSWHKSCFRCAKCGKSL 152
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 28.2 bits (62), Expect = 2.5
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 14/103 (13%)
Query: 166 FCKVCNKALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHS-------DK 218
C C + + + K + H L+ C C K ++ +
Sbjct: 10 SCTACGQQVNHFQ--KDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG 67
Query: 219 KIFVCENCGKSF-----KRKYDLALHIRTHFPLKRFQCKLCDK 256
+ C+ C +F R ++ C +C
Sbjct: 68 NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 29.6 bits (64), Expect = 2.7
Identities = 27/225 (12%), Positives = 51/225 (22%), Gaps = 22/225 (9%)
Query: 81 KCLKCKRQFKVKYNCKYHIHCTSLKAKLS-CDICDKTFVNKSHLDYHKLSHQDLNPYECS 139
K L C ++ I C++ +A + + + ++ +C+
Sbjct: 596 KLLICANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKASFSADASNVTARSIVISEAKCA 655
Query: 140 NCHKGFKNKGKLNRHMKIHSDSKEQWFCKVCNKALMSVESLKKHMKIHAGLKNYHCDICE 199
NCH + + C C H + C
Sbjct: 656 NCHGEKADFSASHALTHAADKPDNS--CGTC------------HSAVPNTAVALADGSCV 701
Query: 200 KSFIEKNDLIKHQVTHSDKKIFVCENCGKSFKRKYDLALHIRTHFPLKRFQCKLC-DKIF 258
K + + R FP C C DK
Sbjct: 702 ACHNGAPAHSKKPFERGFDFKVMIHQI-HADTRSVRRLTTDAATFPENPANCAACHDKGQ 760
Query: 259 FTLHNMRRHMRIHKDRPLF-----ECHDCHKSFTRKDNLERHVKS 298
+L + + C CH + + H ++
Sbjct: 761 LSLATLGNKPAFLASTGEYSPTVAACASCHATTATDSAVIGHFET 805
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 2.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 135 PYECSNCHKGFKNKGKLNRHMKIHSDSK 162
PY+C C K LN H++ H+ K
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (57), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 129 SHQDLNPYECSNCHKGFKNKGKLNRHMKIHS 159
S Q ++C+ C K F L +H +IH+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 3.5
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 242 THFPLKRFQCKLCDKIFFTLHNMRRHMRIH 271
+ K F+C C+K F + +H RIH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.9 bits (56), Expect = 4.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 187 HAGLKNYHCDICEKSFIEKNDLIKHQVTHS 216
K + C+ CEK+F L +H+ H+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.6 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 214 THSDKKIFVCENCGKSFKRKYDLALHIRTH 243
+ +K F C C K+F L H R H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.6 bits (59), Expect = 3.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 22 SCGHIKCRMCLLSDSTQCYLC 42
C H C CL + QC +C
Sbjct: 23 PCLHTLCSGCLEASGMQCPIC 43
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 191 KNYHCDICEKSFIEKNDLIKHQVTHSDK 218
K Y C C+ +F + LI+HQ TH+ K
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHAAK 38
Score = 25.3 bits (54), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 136 YECSNCHKGFKNKGKLNRHMKIHS 159
YECS C F + L +H K H+
Sbjct: 13 YECSKCQATFNLRKHLIQHQKTHA 36
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine
and acid) family ,PPGPP hydrolase, hydrolase; 2.90A
{Drosophila melanogaster}
Length = 179
Score = 28.4 bits (64), Expect = 3.6
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 6/23 (26%)
Query: 252 KLCDKIFFTLHNMR--RHMRIHK 272
KL DK L N+R +
Sbjct: 120 KLADK----LDNLRDLQVNTPTG 138
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 28.6 bits (63), Expect = 3.7
Identities = 13/78 (16%), Positives = 25/78 (32%)
Query: 110 CDICDKTFVNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQWFCKV 169
F + + L +CS H K+ S +WFC V
Sbjct: 41 IRQQTFIFTDSPDERLQERLGPHLVVTQCSAEHSHPALSCKMAAEFDAFLVSGLRWFCHV 100
Query: 170 CNKALMSVESLKKHMKIH 187
+ ++ ++L + +K
Sbjct: 101 DDDNYVNPKALLQLLKTF 118
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
a.211.1.1 d.218.1.8
Length = 393
Score = 28.7 bits (65), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 252 KLCDKIFFTLHNMR--RHMRIHKDR 274
KL D+ LHNMR +H+R K
Sbjct: 141 KLADR----LHNMRTLKHLRKDKQE 161
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 28.4 bits (64), Expect = 5.9
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 100 HCTSLKAKLSCDICDKTFVNKSHL 123
H T+LK K + ICDK+ + K ++
Sbjct: 635 HMTALKKKFN-RICDKSMIKKRYI 657
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 26.0 bits (57), Expect = 6.3
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 3 QCPQCKGLV---VCSESRLVQDSCGHIKCRMCL---LSDSTQCYLCWQKNEHASFI 52
CP C V + +V CGH+ C CL L ++ C C +K H +
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 26.3 bits (58), Expect = 8.5
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 14/50 (28%)
Query: 3 QCPQCKGL----VVCSESRLVQDSCGHIKCRMCL---LSDSTQCYLCWQK 45
+C C ++ + C H C +C+ LS TQC C
Sbjct: 24 RCGICFEYFNIAMIIPQ-------CSHNYCSLCIRKFLSYKTQCPTCCVT 66
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 26.6 bits (58), Expect = 8.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 248 RFQCKLCDKIFFTLHNMRRHMR--IHKDR 274
+C C + F N++ H R HK R
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRSKDHKKR 78
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 27.8 bits (60), Expect = 8.7
Identities = 20/194 (10%), Positives = 48/194 (24%), Gaps = 19/194 (9%)
Query: 110 CDICDKTF----VNKSHLDYHKLSHQDLNPYECSNCHKGFKNKGKLNRHMKIHSDSKEQW 165
CD C + +Y+ + C C + +
Sbjct: 61 CDSCQTWYHFLCSGLEQFEYYLYEK-----FFCPKCVPHTGHSIRYKVVAPHRYRWYSPN 115
Query: 166 FCKVCNK--ALMSVESLKKHMKIHAGLKNYHCDICEKSFIEKNDLIKHQVTHSDKKIFVC 223
+ + + +E + I E + + + K + K+F+
Sbjct: 116 EKHLGIEVGSKTWIEDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWGKVFMV 175
Query: 224 ENCGKSFKRK-------YDLALHIRTHFPLKRFQCKLCDKIFFTLHNMRRHMRIHKDR-P 275
++ D+ + + + + L R+ R K+R
Sbjct: 176 KDMDGLNMTMPKPGFDLEDVVKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPL 235
Query: 276 LFECHDCHKSFTRK 289
L+ S +
Sbjct: 236 LYNFLSLEFSDNNE 249
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 25.5 bits (56), Expect = 9.3
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 3 QCPQCKGLV---VCSESRLVQDSCGHIKCRMCL---LSDSTQCYLCWQKNEHASFI 52
CP C V + +V CGH+ C CL L ++ C C +K H +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.426
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,411,013
Number of extensions: 378004
Number of successful extensions: 3053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2482
Number of HSP's successfully gapped: 1167
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)