BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12561
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 4 FFFLSGLFHVWPVMRDVAAVSKKEL 28
FF +SGL H PV RD S +E
Sbjct: 185 FFTISGLIHYAPVFRDYVFRSMQEF 209
>pdb|1DJA|A Chain A, Structure Of Beta-Lactamase Precursor, K73h Mutant, At
298k
Length = 258
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1KGE|A Chain A, Structure Of Beta-Lactamase Asn 170 Met Mutant
Length = 258
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1BLP|A Chain A, Structural Basis For The Inactivation Of The P54 Mutant Of
Beta- Lactamase From Staphylococcus Aureus Pc1
Length = 257
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 209 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 256
>pdb|1GHI|A Chain A, Structure Of Beta-Lactamase Glu166asp:asn170gln Mutant
pdb|1GHM|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Cephaloridine
pdb|1GHP|A Chain A, Structures Of The Acyl-Enzyme Complex Of The
Staphylococcus Aureus Beta-Lactamase Mutant
Glu166asp:asn170gln With Degraded Benzylpenicillin
Length = 258
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1KGG|A Chain A, Structure Of Beta-Lactamase Glu166gln:asn170asp Mutant
Length = 258
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1DJB|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
298k
pdb|1DJC|A Chain A, Structure Of Beta-Lactamase Precursor, S70a Mutant, At
120k
Length = 257
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 209 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 256
>pdb|1OME|A Chain A, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
pdb|1OME|B Chain B, Crystal Structure Of The Omega Loop Deletion Mutant
(Residues 163-178 Deleted) Of Beta-Lactamase From
Staphylococcus Aureus Pc1
Length = 258
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 209 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 256
>pdb|1BLC|A Chain A, Inhibition Of Beta-Lactamase By Clavulanate: Trapped
Intermediates In Cryocrystallographic Studies
pdb|1BLH|A Chain A, Structure Of A Phosphonate-Inhibited Beta-Lactamase. An
Analog Of The Tetrahedral Transition State(Slash)
Intermediate Of Beta-Lactam Hydrolysis
pdb|3BLM|A Chain A, Refined Crystal Structure Of Beta-Lactamase From
Staphylococcus Aureus Pc1 At 2.0
Length = 257
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 209 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 256
>pdb|1KGF|A Chain A, Structure Of Beta-Lactamase Asn 170 Gln Mutant
Length = 258
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKS-KSGQQTLDEAAERLFKE 69
S+ ++ FV+P G + V+F ++ +KS K + + E A+ + KE
Sbjct: 210 ASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKE 257
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 568 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 606
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 568 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 606
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 569 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 607
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 568 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 606
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 568 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 606
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101
A+R+ K +L R + N+L+PF+KG F+ K
Sbjct: 569 ADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYK 607
>pdb|2XQO|A Chain A, Ctcel124: A Cellulase From Clostridium Thermocellum
Length = 243
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 14 WPVMRDVAAVSKKELLFVFPFG 35
W V+RDV KE+ + F FG
Sbjct: 70 WDVIRDVCGFKNKEVAYAFFFG 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.146 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,804,626
Number of Sequences: 62578
Number of extensions: 134995
Number of successful extensions: 405
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 18
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 46 (22.3 bits)