Query psy12561
Match_columns 139
No_of_seqs 139 out of 1124
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2848|consensus 100.0 4.8E-33 1E-37 200.6 11.4 132 3-138 99-231 (276)
2 PRK15018 1-acyl-sn-glycerol-3- 100.0 3.6E-32 7.9E-37 199.9 13.9 131 2-138 74-205 (245)
3 PTZ00261 acyltransferase; Prov 100.0 8.3E-30 1.8E-34 193.4 13.9 135 2-139 138-287 (355)
4 PLN02901 1-acyl-sn-glycerol-3- 100.0 1.3E-27 2.9E-32 172.7 13.7 131 2-138 59-191 (214)
5 cd07988 LPLAT_ABO13168-like Ly 99.9 4.4E-26 9.6E-31 158.5 12.4 113 2-138 30-146 (163)
6 cd07992 LPLAT_AAK14816-like Ly 99.9 4.5E-25 9.7E-30 158.2 13.0 126 3-139 39-178 (203)
7 cd07991 LPLAT_LPCAT1-like Lyso 99.9 5E-25 1.1E-29 158.9 12.0 127 2-138 33-175 (211)
8 cd07993 LPLAT_DHAPAT-like Lyso 99.9 2.1E-25 4.5E-30 160.3 9.3 135 2-138 31-199 (205)
9 COG0204 PlsC 1-acyl-sn-glycero 99.9 2.1E-24 4.6E-29 158.3 12.9 129 2-138 73-203 (255)
10 PRK08633 2-acyl-glycerophospho 99.9 4E-24 8.6E-29 183.4 13.6 129 2-138 450-587 (1146)
11 PRK08043 bifunctional acyl-[ac 99.9 5.9E-24 1.3E-28 176.1 13.0 129 2-139 37-170 (718)
12 PRK06814 acylglycerophosphoeth 99.9 7E-24 1.5E-28 182.5 12.4 128 2-138 463-595 (1140)
13 cd07986 LPLAT_ACT14924-like Ly 99.9 5.2E-24 1.1E-28 153.5 9.0 128 3-138 33-188 (210)
14 TIGR00530 AGP_acyltrn 1-acyl-s 99.9 2.6E-22 5.6E-27 133.7 11.5 106 2-112 25-130 (130)
15 cd07985 LPLAT_GPAT Lysophospho 99.9 2.5E-22 5.4E-27 145.5 10.4 134 2-139 31-203 (235)
16 cd07987 LPLAT_MGAT-like Lysoph 99.9 2.8E-22 6E-27 144.5 8.4 123 3-138 30-178 (212)
17 smart00563 PlsC Phosphate acyl 99.9 2.7E-21 5.9E-26 126.1 12.2 109 2-113 8-117 (118)
18 PRK03355 glycerol-3-phosphate 99.9 4.4E-21 9.4E-26 158.5 12.3 134 2-138 276-445 (783)
19 cd07983 LPLAT_DUF374-like Lyso 99.9 9.7E-21 2.1E-25 134.2 11.8 127 2-138 35-166 (189)
20 PLN02783 diacylglycerol O-acyl 99.9 1.6E-21 3.6E-26 148.0 7.8 125 2-139 110-272 (315)
21 PLN02833 glycerol acyltransfer 99.9 9.6E-21 2.1E-25 146.4 12.0 127 2-138 172-315 (376)
22 PF01553 Acyltransferase: Acyl 99.9 2.8E-22 6E-27 133.8 2.9 108 2-112 23-132 (132)
23 TIGR03703 plsB glycerol-3-phos 99.8 1.4E-20 3E-25 156.4 11.4 133 3-138 302-468 (799)
24 PRK04974 glycerol-3-phosphate 99.8 1.5E-20 3.2E-25 156.4 11.2 135 2-138 311-478 (818)
25 cd07989 LPLAT_AGPAT-like Lysop 99.8 1.3E-19 2.8E-24 127.4 14.2 133 2-139 33-166 (184)
26 PRK14014 putative acyltransfer 99.8 4.8E-20 1E-24 139.3 12.1 110 3-114 97-231 (301)
27 cd06551 LPLAT Lysophospholipid 99.8 1.1E-18 2.3E-23 122.9 12.2 125 2-138 35-164 (187)
28 PTZ00374 dihydroxyacetone phos 99.8 3.9E-19 8.5E-24 148.1 10.7 135 2-138 638-809 (1108)
29 PLN02177 glycerol-3-phosphate 99.7 2.1E-16 4.5E-21 126.3 10.0 118 3-138 311-441 (497)
30 cd07990 LPLAT_LCLAT1-like Lyso 99.7 2E-16 4.2E-21 112.6 6.5 83 2-87 33-120 (193)
31 PLN02510 probable 1-acyl-sn-gl 99.7 7.2E-16 1.6E-20 119.4 9.9 103 2-111 101-208 (374)
32 PLN02588 glycerol-3-phosphate 99.6 1.3E-15 2.7E-20 120.4 9.2 119 3-138 337-468 (525)
33 PLN02499 glycerol-3-phosphate 99.6 1.2E-15 2.6E-20 120.5 8.5 118 2-137 297-427 (498)
34 PRK11915 glycerol-3-phosphate 99.6 2.3E-15 5E-20 121.8 9.1 133 3-138 125-292 (621)
35 PLN02380 1-acyl-sn-glycerol-3- 99.6 3.9E-15 8.4E-20 115.3 8.1 84 2-88 93-181 (376)
36 cd07984 LPLAT_LABLAT-like Lyso 99.6 4E-14 8.8E-19 100.0 11.5 114 2-138 29-155 (192)
37 KOG2847|consensus 99.6 3.2E-15 6.9E-20 108.1 5.2 113 24-139 107-224 (286)
38 COG2121 Uncharacterized protei 99.2 2.2E-10 4.9E-15 81.1 11.4 119 13-138 63-186 (214)
39 COG2937 PlsB Glycerol-3-phosph 99.1 1.6E-10 3.4E-15 94.2 7.2 133 3-138 306-474 (810)
40 KOG3729|consensus 99.1 4E-10 8.6E-15 89.4 8.1 135 3-138 168-341 (715)
41 KOG1505|consensus 98.9 8.4E-10 1.8E-14 84.9 3.1 109 3-114 81-216 (346)
42 KOG3730|consensus 98.6 1E-07 2.3E-12 75.1 5.5 134 3-138 160-329 (685)
43 PRK07920 lipid A biosynthesis 98.2 8.1E-05 1.8E-09 56.4 12.7 103 1-112 116-230 (298)
44 PRK08419 lipid A biosynthesis 98.1 7.7E-05 1.7E-09 56.4 12.2 117 1-138 121-248 (298)
45 PF03982 DAGAT: Diacylglycerol 98.1 2.7E-06 5.8E-11 64.5 3.9 85 19-114 98-190 (297)
46 KOG4666|consensus 98.0 3.7E-06 8E-11 63.7 3.0 95 20-123 30-126 (412)
47 PLN02349 glycerol-3-phosphate 97.9 1.5E-05 3.3E-10 61.9 5.0 103 18-120 231-355 (426)
48 PF03279 Lip_A_acyltrans: Bact 97.5 0.0024 5.2E-08 48.1 11.4 99 2-112 130-240 (295)
49 PRK06553 lipid A biosynthesis 97.2 0.0093 2E-07 45.4 11.2 100 2-112 142-251 (308)
50 PF04028 DUF374: Domain of unk 96.9 0.0077 1.7E-07 36.4 6.6 62 18-82 10-71 (74)
51 COG1560 HtrB Lauroyl/myristoyl 96.8 0.026 5.7E-07 43.2 10.5 100 2-112 132-243 (308)
52 PRK06628 lipid A biosynthesis 96.8 0.038 8.2E-07 41.7 11.1 101 2-112 123-232 (290)
53 PRK05646 lipid A biosynthesis 96.7 0.031 6.7E-07 42.6 10.3 54 58-112 182-242 (310)
54 KOG2898|consensus 96.7 0.0032 6.9E-08 48.8 4.8 73 36-114 177-251 (354)
55 TIGR02207 lipid_A_htrB lipid A 96.5 0.038 8.2E-07 41.9 9.6 98 2-112 129-238 (303)
56 PRK06946 lipid A biosynthesis 96.5 0.019 4E-07 43.5 7.8 101 2-112 118-229 (293)
57 PRK08734 lipid A biosynthesis 96.5 0.044 9.5E-07 41.7 9.7 100 2-112 122-232 (305)
58 PRK05906 lipid A biosynthesis 96.4 0.021 4.5E-07 46.0 7.7 98 2-112 149-257 (454)
59 PRK08733 lipid A biosynthesis 96.2 0.082 1.8E-06 40.2 10.1 54 58-112 183-243 (306)
60 KOG0831|consensus 96.2 0.0078 1.7E-07 46.0 4.2 88 18-114 135-228 (334)
61 PRK06860 lipid A biosynthesis 96.2 0.057 1.2E-06 41.1 9.0 98 2-112 135-244 (309)
62 PRK08706 lipid A biosynthesis 96.1 0.028 6.1E-07 42.3 7.1 56 57-112 164-226 (289)
63 PRK08905 lipid A biosynthesis 95.6 0.1 2.2E-06 39.4 8.1 100 2-112 110-220 (289)
64 PRK08025 lipid A biosynthesis 95.3 0.12 2.6E-06 39.2 7.8 98 2-112 133-242 (305)
65 PRK15174 Vi polysaccharide exp 95.3 0.19 4.2E-06 42.2 9.4 54 56-111 532-592 (656)
66 PRK08943 lipid A biosynthesis 94.6 0.12 2.6E-06 39.5 5.9 84 19-112 156-250 (314)
67 TIGR02208 lipid_A_msbB lipid A 94.0 0.2 4.3E-06 38.1 6.2 55 57-112 180-241 (305)
68 PRK05645 lipid A biosynthesis 93.4 1 2.3E-05 33.9 9.0 100 2-112 121-231 (295)
69 COG3176 Putative hemolysin [Ge 91.9 0.49 1.1E-05 36.0 5.4 104 4-114 91-203 (292)
70 KOG4321|consensus 88.8 0.063 1.4E-06 37.7 -1.5 85 18-114 72-161 (279)
71 cd07571 ALP_N-acyl_transferase 87.6 0.6 1.3E-05 34.8 3.0 55 54-108 23-77 (270)
72 cd07581 nitrilase_3 Uncharacte 81.8 2.4 5.3E-05 30.9 3.9 56 53-108 13-79 (255)
73 cd07585 nitrilase_7 Uncharacte 81.5 4.9 0.00011 29.4 5.5 59 51-109 13-81 (261)
74 cd07583 nitrilase_5 Uncharacte 81.0 3.3 7.1E-05 30.2 4.4 58 51-108 13-79 (253)
75 cd07197 nitrilase Nitrilase su 80.4 3.4 7.4E-05 29.8 4.3 57 53-109 14-82 (253)
76 cd07584 nitrilase_6 Uncharacte 79.2 4.2 9E-05 29.7 4.4 58 51-108 13-83 (258)
77 cd07572 nit Nit1, Nit 2, and r 77.7 4.2 9.1E-05 29.8 4.1 58 52-109 13-81 (265)
78 cd07573 CPA N-carbamoylputresc 77.6 4.6 0.0001 29.9 4.3 55 53-107 15-83 (284)
79 KOG3295|consensus 75.4 6.5 0.00014 28.0 4.2 62 43-113 92-158 (205)
80 cd07578 nitrilase_1_R1 First n 74.9 5.8 0.00013 29.1 4.2 55 53-107 16-82 (258)
81 TIGR03381 agmatine_aguB N-carb 74.0 7.7 0.00017 28.6 4.7 57 51-107 13-83 (279)
82 cd07576 R-amidase_like Pseudom 73.2 8.2 0.00018 28.0 4.6 58 51-108 13-80 (254)
83 PLN02747 N-carbamolyputrescine 73.0 7.2 0.00016 29.3 4.4 32 51-82 19-50 (296)
84 cd07579 nitrilase_1_R2 Second 72.7 6.5 0.00014 29.4 4.0 56 53-108 14-76 (279)
85 cd07568 ML_beta-AS_like mammal 71.2 8.6 0.00019 28.6 4.4 55 53-107 26-94 (287)
86 cd07567 biotinidase_like bioti 67.5 7.4 0.00016 29.7 3.4 29 54-82 24-52 (299)
87 PRK13703 conjugal pilus assemb 67.1 14 0.0003 27.6 4.6 52 58-114 133-184 (248)
88 cd07569 DCase N-carbamyl-D-ami 65.2 15 0.00032 27.7 4.7 55 53-107 21-92 (302)
89 PF13728 TraF: F plasmid trans 64.0 14 0.00031 26.7 4.2 52 58-114 110-161 (215)
90 TIGR00546 lnt apolipoprotein N 63.1 6.4 0.00014 30.9 2.4 52 57-108 182-236 (391)
91 cd07570 GAT_Gln-NAD-synth Glut 61.4 10 0.00022 27.7 3.0 30 53-82 15-44 (261)
92 TIGR01663 PNK-3'Pase polynucle 61.2 35 0.00076 28.3 6.4 79 27-114 379-457 (526)
93 PRK13397 3-deoxy-7-phosphohept 60.5 69 0.0015 23.9 7.7 87 18-107 99-188 (250)
94 TIGR02739 TraF type-F conjugat 60.4 21 0.00045 26.8 4.5 53 57-114 139-191 (256)
95 PF00795 CN_hydrolase: Carbon- 59.3 10 0.00022 26.0 2.6 53 54-107 18-88 (186)
96 cd07586 nitrilase_8 Uncharacte 58.7 13 0.00027 27.3 3.2 30 53-82 15-44 (269)
97 COG0388 Predicted amidohydrola 58.5 12 0.00026 27.7 3.0 32 51-82 16-47 (274)
98 cd07564 nitrilases_CHs Nitrila 58.4 14 0.00031 27.8 3.5 32 51-82 14-45 (297)
99 cd07580 nitrilase_2 Uncharacte 55.7 14 0.00031 27.1 3.0 30 53-82 15-44 (268)
100 cd07574 nitrilase_Rim1_like Un 55.4 14 0.00029 27.4 2.9 56 53-108 17-90 (280)
101 cd07575 Xc-1258_like Xanthomon 55.2 16 0.00034 26.7 3.2 56 51-107 14-77 (252)
102 PRK12595 bifunctional 3-deoxy- 54.0 95 0.002 24.5 7.4 85 19-106 203-290 (360)
103 PRK00302 lnt apolipoprotein N- 53.9 11 0.00024 30.7 2.4 40 69-108 256-296 (505)
104 PLN02798 nitrilase 53.8 16 0.00034 27.3 3.0 58 51-108 23-90 (286)
105 PRK13287 amiF formamidase; Pro 53.5 28 0.0006 26.9 4.4 59 50-108 30-101 (333)
106 PLN02504 nitrilase 53.3 20 0.00043 27.9 3.6 30 53-82 40-69 (346)
107 PRK06852 aldolase; Validated 51.8 26 0.00057 26.9 3.9 55 57-112 154-210 (304)
108 PRK02079 pyrroloquinoline quin 51.5 11 0.00023 23.5 1.5 13 70-82 21-33 (88)
109 cd01019 ZnuA Zinc binding prot 49.8 76 0.0016 23.9 6.2 73 30-112 185-260 (286)
110 cd01018 ZntC Metal binding pro 49.6 1E+02 0.0022 22.8 6.8 71 30-110 176-247 (266)
111 cd07566 ScNTA1_like Saccharomy 48.8 23 0.0005 26.8 3.3 55 53-107 15-86 (295)
112 PF12708 Pectate_lyase_3: Pect 48.3 24 0.00051 24.7 3.1 30 53-82 15-44 (225)
113 cd07582 nitrilase_4 Uncharacte 47.0 21 0.00045 26.8 2.8 59 50-108 17-95 (294)
114 cd07565 aliphatic_amidase alip 46.6 28 0.0006 26.2 3.4 58 51-108 18-88 (291)
115 PF01297 TroA: Periplasmic sol 45.6 76 0.0017 23.1 5.6 70 30-109 156-228 (256)
116 COG3371 Predicted membrane pro 45.5 8.6 0.00019 27.2 0.4 11 72-82 91-101 (181)
117 cd01017 AdcA Metal binding pro 44.6 1.2E+02 0.0026 22.6 6.5 72 30-111 177-251 (282)
118 cd07587 ML_beta-AS mammalian-l 44.3 26 0.00056 27.5 3.0 56 52-107 85-155 (363)
119 COG3411 Ferredoxin [Energy pro 41.9 47 0.001 19.4 3.1 14 67-80 14-27 (64)
120 KOG0805|consensus 41.4 50 0.0011 24.9 3.9 27 56-82 36-62 (337)
121 PLN00202 beta-ureidopropionase 40.2 51 0.0011 26.3 4.1 56 53-108 109-177 (405)
122 KOG0806|consensus 37.6 52 0.0011 25.3 3.6 30 53-82 29-58 (298)
123 PRK13981 NAD synthetase; Provi 37.4 32 0.0007 28.3 2.7 32 51-82 14-45 (540)
124 PRK09250 fructose-bisphosphate 37.0 56 0.0012 25.7 3.7 57 56-113 178-240 (348)
125 cd07577 Ph0642_like Pyrococcus 35.7 67 0.0015 23.3 4.0 52 54-108 16-80 (259)
126 PHA00687 hypothetical protein 35.4 47 0.001 18.0 2.2 33 36-69 17-49 (56)
127 TIGR03586 PseI pseudaminic aci 35.3 2.1E+02 0.0046 22.2 7.5 62 18-82 111-172 (327)
128 PF09587 PGA_cap: Bacterial ca 34.9 1.3E+02 0.0027 22.0 5.3 51 56-107 170-220 (250)
129 TIGR01361 DAHP_synth_Bsub phos 34.4 2E+02 0.0042 21.5 6.6 62 19-82 110-172 (260)
130 CHL00073 chlN photochlorophyll 34.4 49 0.0011 27.0 3.2 59 56-115 82-140 (457)
131 PRK02628 nadE NAD synthetase; 34.3 49 0.0011 28.3 3.3 32 51-82 26-57 (679)
132 PTZ00352 60S ribosomal protein 33.6 33 0.00071 24.9 1.9 35 43-78 92-126 (212)
133 PF13362 Toprim_3: Toprim doma 33.6 1.1E+02 0.0025 18.5 5.2 34 43-77 45-78 (96)
134 PLN02339 NAD+ synthase (glutam 33.0 48 0.001 28.5 3.1 32 51-82 17-48 (700)
135 PTZ00192 60S ribosomal protein 33.0 34 0.00075 24.9 1.9 36 43-79 99-134 (218)
136 COG4668 MtlA Mannitol/fructose 31.6 38 0.00083 23.0 1.9 29 60-89 64-92 (142)
137 COG1929 Glycerate kinase [Carb 30.9 99 0.0021 24.6 4.2 40 71-111 285-324 (378)
138 TIGR03569 NeuB_NnaB N-acetylne 30.7 1.3E+02 0.0029 23.4 4.9 51 18-71 110-160 (329)
139 COG2861 Uncharacterized protei 29.7 96 0.0021 23.2 3.8 61 30-108 118-178 (250)
140 cd01137 PsaA Metal binding pro 29.6 1.8E+02 0.0038 21.9 5.4 69 30-108 183-254 (287)
141 PRK08227 autoinducer 2 aldolas 29.4 87 0.0019 23.6 3.6 47 58-107 128-175 (264)
142 PRK13600 putative ribosomal pr 28.9 1.4E+02 0.0031 18.3 4.4 47 56-109 15-61 (84)
143 PF03749 SfsA: Sugar fermentat 27.6 2.3E+02 0.005 20.6 5.5 61 54-114 141-205 (215)
144 PF10405 BHD_3: Rad4 beta-hair 27.1 73 0.0016 19.1 2.4 21 92-112 26-46 (76)
145 KOG0807|consensus 26.9 77 0.0017 23.9 2.9 27 53-79 30-56 (295)
146 PRK00347 putative DNA-binding 25.9 2.6E+02 0.0057 20.6 5.6 61 53-113 154-218 (234)
147 PRK10438 C-N hydrolase family 25.4 78 0.0017 23.2 2.8 49 54-104 20-75 (256)
148 PF03102 NeuB: NeuB family; I 25.4 1.8E+02 0.0038 21.6 4.6 55 18-75 90-145 (241)
149 cd01821 Rhamnogalacturan_acety 25.3 2.1E+02 0.0045 19.7 4.9 58 54-111 91-154 (198)
150 PRK13286 amiE acylamide amidoh 25.1 92 0.002 24.3 3.2 43 69-111 50-103 (345)
151 PF03269 DUF268: Caenorhabditi 25.0 1.1E+02 0.0024 21.5 3.3 29 52-80 87-115 (177)
152 PF14386 DUF4417: Domain of un 24.4 1.2E+02 0.0026 21.8 3.4 79 29-113 97-175 (200)
153 PF00781 DAGK_cat: Diacylglyce 24.3 1.1E+02 0.0024 19.7 3.1 26 57-82 65-94 (130)
154 smart00255 TIR Toll - interleu 24.2 2E+02 0.0044 18.3 4.8 53 61-114 47-99 (140)
155 COG1489 SfsA DNA-binding prote 24.1 3.1E+02 0.0066 20.4 6.0 61 53-113 151-215 (235)
156 COG2515 Acd 1-aminocyclopropan 23.6 82 0.0018 24.4 2.6 45 56-102 131-175 (323)
157 COG4365 Uncharacterized protei 23.6 1.5E+02 0.0032 24.2 4.0 52 58-111 70-128 (537)
158 PRK13825 conjugal transfer pro 22.9 1.4E+02 0.003 23.7 3.9 38 68-108 220-257 (388)
159 COG0414 PanC Panthothenate syn 22.6 2.2E+02 0.0047 21.8 4.6 50 55-113 6-59 (285)
160 COG0528 PyrH Uridylate kinase 22.5 2.2E+02 0.0048 21.2 4.6 50 57-112 113-162 (238)
161 PRK10178 D-alanyl-D-alanine di 22.4 2.2E+02 0.0049 20.2 4.5 48 19-76 20-67 (184)
162 COG2873 MET17 O-acetylhomoseri 22.3 3.6E+02 0.0079 21.8 5.9 75 21-107 103-181 (426)
163 PF10885 DUF2684: Protein of u 21.8 82 0.0018 19.3 1.9 34 32-82 30-63 (89)
164 PRK00784 cobyric acid synthase 21.7 4.3E+02 0.0094 21.6 6.6 52 55-111 111-165 (488)
165 TIGR00379 cobB cobyrinic acid 21.3 3.8E+02 0.0083 21.6 6.2 53 56-111 64-118 (449)
166 PF03846 SulA: Cell division i 21.0 99 0.0021 20.4 2.3 23 53-75 93-115 (119)
167 COG1013 PorB Pyruvate:ferredox 21.0 2.5E+02 0.0053 21.5 4.8 42 34-76 160-201 (294)
168 COG0130 TruB Pseudouridine syn 20.9 3.8E+02 0.0082 20.3 5.9 73 42-137 16-89 (271)
169 PF13500 AAA_26: AAA domain; P 20.3 1.8E+02 0.0038 20.2 3.7 47 64-114 94-140 (199)
170 cd01020 TroA_b Metal binding p 20.3 3.6E+02 0.0079 19.8 5.8 72 30-109 159-238 (264)
171 PRK11864 2-ketoisovalerate fer 20.1 2.7E+02 0.0059 21.4 4.8 42 34-76 163-204 (300)
No 1
>KOG2848|consensus
Probab=100.00 E-value=4.8e-33 Score=200.63 Aligned_cols=132 Identities=41% Similarity=0.771 Sum_probs=127.3
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
|.+|.+.|+..+| .++.+++|.++++.|++||.+..+|.+++|| .+++++.++++++.+++++++..+.+||||||+
T Consensus 99 S~LDil~m~~i~p--~~cvviaKr~L~yvp~~gl~m~L~gvvfIdR-~r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTRn 175 (276)
T KOG2848|consen 99 SSLDILGMGSIWP--KNCVVIAKRSLFYVPIFGLAMYLSGVVFIDR-SRREKAIDTLDKCAERMKKENRKVWVFPEGTRN 175 (276)
T ss_pred hHHHHHHHHhhcC--CceEEEEeeeeeecchHHHHHHHcCceEEec-CCHHHHHHHHHHHHHHHHhCCeeEEEccCCccC
Confidence 7899999999999 8999999999999999999999999999999 999999999999999999998999999999999
Q ss_pred CCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCceeceEEEEEEecccc
Q psy12561 83 KNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 83 ~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
.++.+.|||+|+|++|.++++|||||++.++ +.++.+++.+..+.+.|+++||+.
T Consensus 176 -~~g~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~~~k~f~sG~v~V~vL~pI~ 231 (276)
T KOG2848|consen 176 -KEGRLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYSTKEKVFNSGNVIVRVLPPIP 231 (276)
T ss_pred -CCCcccccccceeeeehhcCCCEEEEEEecccccccCccceeecceEEEEEcCCCC
Confidence 9999999999999999999999999999988 899999999999999999999973
No 2
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=100.00 E-value=3.6e-32 Score=199.93 Aligned_cols=131 Identities=28% Similarity=0.457 Sum_probs=119.0
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|++|++++...++ ++..|++|+++++.|++||+++..|+++||| ++++++.++++++.+.++++|.+++|||||||
T Consensus 74 ~S~lD~~~l~~~~~--~~~~fvaK~el~~~P~~g~~~~~~g~i~VdR-~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR 150 (245)
T PRK15018 74 QNNYDMVTASNIVQ--PPTVTVGKKSLLWIPFFGQLYWLTGNLLIDR-NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTR 150 (245)
T ss_pred CchHHHHHHHHHhC--CCcEEEEeHHHhhCCHHHHHHHhCCCeEEeC-CCHHHHHHHHHHHHHHHHhCCCEEEEECCccC
Confidence 58999998887777 6788999999999999999999999999999 88888889999999999887879999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCceeceEEEEEEecccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
+ .++++.+||+|++++|.++++||+||+++|+ ..++.. ..++++++|++|+|+.
T Consensus 151 s-~~g~l~~Fk~Ga~~lA~~~~~PIvPv~i~g~~~~~~~~--~~~~g~i~v~~~~PI~ 205 (245)
T PRK15018 151 S-RGRGLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLN--RLHNGLVIVEMLPPID 205 (245)
T ss_pred C-CCCCCCCccHHHHHHHHHcCCCEEEEEEECcccccccC--CccCeeEEEEEcCCCc
Confidence 9 8999999999999999999999999999998 666543 3567899999999986
No 3
>PTZ00261 acyltransferase; Provisional
Probab=99.97 E-value=8.3e-30 Score=193.39 Aligned_cols=135 Identities=21% Similarity=0.182 Sum_probs=111.4
Q ss_pred cchhhhhhhhhhcccC--CceEEEEchhhhccchhHHHHHhcCeEEEEccCCc--------hhhHHHHHHH-HHHHhcCC
Q psy12561 2 YGFFFLSGLFHVWPVM--RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKS--------KSGQQTLDEA-AERLFKEN 70 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~--~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~--------~~~~~~~~~~-~~~l~~~g 70 (139)
-|++|++++...+|.+ .+++|++|++++++|++||+++..|+|||+| ++. ++..+.+.+. .+.+++ |
T Consensus 138 qS~lDi~vl~~~~p~r~~~~~~fVAKkELfkiP~fG~~l~~~G~IPVdR-~~~~~g~~~vdrea~~~v~~~~~e~Lk~-G 215 (355)
T PTZ00261 138 TSFWDVYAFIGLTPFRHLLNTRTLMKSSLRKIPIFGGVFDRVGHFPVHF-KSDSDGNFEVDKEKQAQVQQAIDAHLRL-G 215 (355)
T ss_pred CchHHHHHHHHHcccccccccEEEEHHHHhhccHHHHHHHHCCCeeeec-ccccccccccchHHHHHHHHHHHHHHHC-C
Confidence 5999999999998731 3789999999999999999999999999998 432 1233334444 355554 5
Q ss_pred cEEEEEeCCeecCCC-CCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCce-eceEEEEEEec-cccC
Q psy12561 71 AKMLIFPEGTRNKNP-NKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRF-GYGKCFIYLVQ-LTIF 139 (139)
Q Consensus 71 ~~v~iFPEGtr~~~~-~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~-~~~~v~i~i~~-p~~~ 139 (139)
.+++|||||||+ .+ +.+.+||+|++++|.++++||+|+++.|+ +.|+.+.... ++++++|+||+ |+.+
T Consensus 216 ~sLvIFPEGTRS-~~gg~L~pFK~GaF~LAieagvPIVPvai~Gs~~~wP~g~~l~~~pg~I~V~iG~~PI~~ 287 (355)
T PTZ00261 216 GSLAFFPEGAIN-KHPQVLQTFRYGTFATIIKHRMEVYYMVSVGSEKTWPWWMMIGGLPADMHIRIGAYPIDY 287 (355)
T ss_pred CEEEEECCcCCc-CCCCcCCCCcHHHHHHHHHcCCCEEEEEEeChhhcCCCCCccCCCCceEEEEECCCCCCC
Confidence 699999999999 65 45999999999999999999999999999 8999876543 68899999999 9763
No 4
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=99.95 E-value=1.3e-27 Score=172.73 Aligned_cols=131 Identities=28% Similarity=0.450 Sum_probs=116.5
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|.+|++++... . ++++|++|++++++|++||+++..|+++||| ++.++..++++++.+.++++ .+++||||||+
T Consensus 59 ~S~~D~~~l~~~-~--~~~~~v~k~~l~~~P~~g~~~~~~~~i~v~R-~~~~~~~~~~~~~~~~l~~g-~~v~IfPEGtr 133 (214)
T PLN02901 59 QSFLDIYTLFHL-G--RPFKFISKTSIFLIPIIGWAMYMTGHIPLKR-MDRRSQLECLKRCMELLKKG-ASVFFFPEGTR 133 (214)
T ss_pred CCchHHHHHhhc-C--CceEEEEEHHhhhccHHHHHHHHCCcEEEec-CCcHHHHHHHHHHHHHHhCC-CEEEEeCCCCC
Confidence 488999877643 3 5789999999999999999999999999999 88777888999999999865 59999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCC-ceeceEEEEEEecccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHK-RFGYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~-~~~~~~v~i~i~~p~~ 138 (139)
+ .++++.+|++|++++|.++++||+|+++.|+ +.|+.+.. ..++++++|++++|+.
T Consensus 134 ~-~~~~~~~f~~G~~~lA~~~~~pIvPv~i~g~~~~~~~~~~~~~~~~~i~v~~~~pi~ 191 (214)
T PLN02901 134 S-KDGKLAAFKKGAFSVAAKTGVPVVPITLVGTGKIMPNGKEGILNPGSVKVVIHPPIE 191 (214)
T ss_pred C-CCCcccCchhhHHHHHHHcCCCEEEEEEecchhhCcCCCcccccCCeEEEEECCCcC
Confidence 9 8889999999999999999999999999988 78887653 4577899999999985
No 5
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=99.94 E-value=4.4e-26 Score=158.52 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=94.7
Q ss_pred cchhhhhhhhhh---cccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcC-CcEEEEEe
Q psy12561 2 YGFFFLSGLFHV---WPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE-NAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~---~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~-g~~v~iFP 77 (139)
-|++|++++... ++ ++++|++|+++++.|+ ||+++..|+|+||| ++.++ +++++.+.++++ +.+++|||
T Consensus 30 ~S~~D~~~l~~~~~~~~--~~~~~vak~~l~~~p~-g~~~~~~g~i~V~r-~~~~~---~~~~~~~~l~~g~~~~l~IFP 102 (163)
T cd07988 30 TSNWDFVLGLLAAFALG--LKISFLGKHSLFKPPL-GPFMRWLGGIPVDR-SRAGG---LVEQVVEEFRRREEFVLAIAP 102 (163)
T ss_pred CccHHHHHHHHHHHhcC--CceEEEEEHHhhhCcH-HHHHHHcCCEEeEc-CCccc---HHHHHHHHHHhCCCcEEEEeC
Confidence 489999988765 34 7899999999999999 99999999999999 77543 455556666653 45899999
Q ss_pred CCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCceeecCCCCceeceEEEEEEecccc
Q psy12561 78 EGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 78 EGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
||||+ .. .+||+|++++|.++++||+||++++.. .+|+||+|+.
T Consensus 103 EGtR~-~~---~~fk~G~~~lA~~~~~PIvPv~i~~~~-------------~~v~~g~pi~ 146 (163)
T cd07988 103 EGTRS-KV---DKWKTGFYHIARGAGVPILLVYLDYKR-------------KTVGIGPLFE 146 (163)
T ss_pred CCCCC-CC---cChhhHHHHHHHHcCCCEEEEEEecCc-------------EEEEECCcCc
Confidence 99999 54 489999999999999999999998742 4889999986
No 6
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=99.93 E-value=4.5e-25 Score=158.22 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=107.9
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchh--------hHHHHHHHHHHHhcCCcEEE
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKS--------GQQTLDEAAERLFKENAKML 74 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~--------~~~~~~~~~~~l~~~g~~v~ 74 (139)
|++|++++....+ +++++++++++++.|+++++++.+|+++|+| ++... ...+++.+.+.+++ |.+++
T Consensus 39 s~~D~~~l~~~~~--~~~~~v~~~~~~~~p~~~~~~~~~g~ipI~r-~~~~~~~~~~~~~~~~~~~~~~~~l~~-G~~l~ 114 (203)
T cd07992 39 ALIDPLLLAATLR--RPVRFLAKADLFKNPLIGWLLESFGAIPVYR-PKDLARGGIGKISNAAVFDAVGEALKA-GGAIG 114 (203)
T ss_pred chhhHHHHHHhcC--CCcEEEEEhhhccchHHHHHHHHcCceEeEc-CCCcccccccchhHHHHHHHHHHHHhC-CCEEE
Confidence 6799999988877 7899999999999999999999999999999 65432 26778888888876 45999
Q ss_pred EEeCCeecCCCCCccccccchHHHHHh------CCCCEEEEEEeCceeecCCCCceeceEEEEEEeccccC
Q psy12561 75 IFPEGTRNKNPNKLLPFRKGAFRVAIK------HQVPIYPLVYSPFYFIDMEHKRFGYGKCFIYLVQLTIF 139 (139)
Q Consensus 75 iFPEGtr~~~~~~~~~~k~G~~~la~~------~~~pVvPv~i~g~~~~~~~~~~~~~~~v~i~i~~p~~~ 139 (139)
||||||++ .++.+.+|++|++++|.+ +++||+||+++|... ...+++++|.+|+|+.+
T Consensus 115 IFPEGtr~-~~~~~~~fk~G~~~lA~~a~~~~~~~vpIvPv~i~~~~~------~~~~~~i~i~~g~pi~~ 178 (203)
T cd07992 115 IFPEGGSH-DRPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDK------SRFRSRVLVEFGKPISV 178 (203)
T ss_pred EeCCCCCC-CCCCccCcCccHHHHHHHHHhcCCCCCeEEeeeEEeCCC------CCCCCeEEEEECCCccc
Confidence 99999999 888999999999999985 699999999987532 12356899999999863
No 7
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=99.93 E-value=5e-25 Score=158.89 Aligned_cols=127 Identities=28% Similarity=0.327 Sum_probs=105.9
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhc-CCcEEEEEeCCe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFK-ENAKMLIFPEGT 80 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~-~g~~v~iFPEGt 80 (139)
-|++|++++.... +.+|++|+++++.|++|++++..|+++||| +++++..++++++.+.+++ +|.+++||||||
T Consensus 33 ~S~~D~~~l~~~~----~~~fv~k~el~~~p~~g~~~~~~g~i~v~R-~~~~~~~~~~~~~~~~~~~~~g~~v~iFPEGt 107 (211)
T cd07991 33 TSFIDPLILFSDL----FPSIVAKKELGKLPFIGTILRALGCIFVDR-SEPKDRKKVVEEIKERATDPNWPPILIFPEGT 107 (211)
T ss_pred CcHHHHHHHhhhc----CcEEEEehhhccCcHHHHHHHhCCceEEeC-CCchhHHHHHHHHHHHHhCCCCCeEEEecCcc
Confidence 5899999998883 588999999999999999999999999999 8766667778888887775 357999999999
Q ss_pred ecCCCCCccccccchHHHHHhCCCCEEEEEEeCce-----eecCCCCc----------eeceEEEEEEecccc
Q psy12561 81 RNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFY-----FIDMEHKR----------FGYGKCFIYLVQLTI 138 (139)
Q Consensus 81 r~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~-----~~~~~~~~----------~~~~~v~i~i~~p~~ 138 (139)
|+ +++.+.+|++|++. +++||+||++.|.. .|+..... ..++.++|++++|+.
T Consensus 108 rs-~~~~l~~Fk~gaf~----~~~pI~Pv~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~v~~l~pi~ 175 (211)
T cd07991 108 TT-NGKALIMFKKGAFE----PGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYT 175 (211)
T ss_pred cc-CCCEEEeecccccc----CCCeeEEEEEEecCccCCcccCCCCccHHHHHHHHhCCcceEEEEEECCCcc
Confidence 99 88899999999874 89999999999862 23322211 246799999999985
No 8
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=99.92 E-value=2.1e-25 Score=160.27 Aligned_cols=135 Identities=23% Similarity=0.228 Sum_probs=105.5
Q ss_pred cchhhhhhhhhhccc-CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchh--hHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 2 YGFFFLSGLFHVWPV-MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKS--GQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~-~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~--~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
-|++|++++.+.++. ..+..+++++++++.|++||+++.+|+++|+| +++.. ..+.+.+..+.+.++|.+++||||
T Consensus 31 ~S~lD~~~l~~~~~~~~~~~~~va~~e~~~~~~~g~~l~~~g~i~I~R-~~~~~~~~~~~~~~~~~~~l~~g~~l~iFPE 109 (205)
T cd07993 31 RSYLDFLLLSFILFSLGLPLPHIAAGENLNIPILGTLLRRLGAFFIRR-SFGKDPLYRAVLQEYVQELLKNGQPLEFFIE 109 (205)
T ss_pred cchhHHHHHHHHHHHCCCCCcEEEEchhhCcHHHHHHHHHCCCEEEec-CCCccHHHHHHHHHHHHHHHhCCceEEEEcC
Confidence 489999999887641 23578889899999999999999999999999 76422 345565544444445779999999
Q ss_pred CeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCcee------------------------ecCCCCceece
Q psy12561 79 GTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYF------------------------IDMEHKRFGYG 127 (139)
Q Consensus 79 Gtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~------------------------~~~~~~~~~~~ 127 (139)
|||+ .++.+.+||.|++++|.++ ++|||||+|+|... |.......+++
T Consensus 110 Gtrs-~~g~~~~~k~G~~~~a~~~~~~~~~~~v~IvPV~i~Y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~g 188 (205)
T cd07993 110 GTRS-RTGKLLPPKLGLLSVVVEAYLKGSVPDVLIVPVSISYDRVLEEELYAEELLGPPKPKESLSGLLGASKILRENFG 188 (205)
T ss_pred CCCC-CCCCccchHHHHHHHHHHHHhhCCCCCeEEEEeEEeeCcccchHHHHHHHcCCCCCCccHHHHHHHHHHhhccCC
Confidence 9999 8889999999999999987 99999999997532 00001122568
Q ss_pred EEEEEEecccc
Q psy12561 128 KCFIYLVQLTI 138 (139)
Q Consensus 128 ~v~i~i~~p~~ 138 (139)
++++++++|+.
T Consensus 189 ~v~v~~~~Pi~ 199 (205)
T cd07993 189 RIRVDFGEPIS 199 (205)
T ss_pred eEEEECCCCcC
Confidence 99999999974
No 9
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=99.92 E-value=2.1e-24 Score=158.25 Aligned_cols=129 Identities=30% Similarity=0.380 Sum_probs=109.7
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|++|++++....+...+++|++|+++++.|++|++++..|++++|| ++++. +.+++..+.++++|.+++|||||||
T Consensus 73 ~S~~D~~~l~~~~~~~~~~~f~~k~~l~~~p~~g~~~~~~~~i~v~r-~~~~~--~~~~~~~~~~~~~g~~l~iFPEGtr 149 (255)
T COG0204 73 QSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDR-ENPDD--ETLRAAVARLKAGGRSLVIFPEGTR 149 (255)
T ss_pred hhhhhHHHHhhhcCCCcceEEEeehhhccCchHHHHHHHcCeeEecC-CCCcH--HHHHHHHHHHHhCCcEEEECCCcCc
Confidence 37899999999997323499999999999999999999999999999 66433 6778888888887789999999999
Q ss_pred cCCC-CCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCceeceEEEEEEecccc
Q psy12561 82 NKNP-NKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~-~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
+ ++ ++..+++.|++.+|.++++||+|+++.|+ ..++...... +.+++++|+.
T Consensus 150 ~-~~~~~~~~~k~g~~~~a~~~~~PivPv~i~g~~~~~~~~~~~~----~~~~~~~pi~ 203 (255)
T COG0204 150 S-RGGEELLPFKRGAARLALEAGVPIVPVAIVGAEELFPSLKKGK----VKVRIGPPID 203 (255)
T ss_pred C-CCccccCCCcchHHHHHHHcCCCEEeEEEeCCcccccCCCcee----EEEEecCCcC
Confidence 9 75 45999999999999999999999999998 5555443222 8999999975
No 10
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.91 E-value=4e-24 Score=183.40 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=108.8
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
.|++|++++...++ ++++|++|++++++|++|++++..|+||||| ++ ..++++.+.+.++++ .+++|||||||
T Consensus 450 ~s~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r-~~---~~~~~~~~~~~l~~g-~~~~ifPeGt~ 522 (1146)
T PRK08633 450 VSWIDWALLQAASP--RPIRFVMERSIYEKWYLKWFFKLFGVIPISS-GG---SKESLEFIRKALDDG-EVVCIFPEGAI 522 (1146)
T ss_pred CchHHHHHHHHHcC--CCeEEEeeHHhhhChhHHHHHHHCCEEEecC-CC---hHHHHHHHHHHHhCC-CEEEEECCcCC
Confidence 58999999999998 8899999999999999999999999999999 66 345666666777765 59999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCc--eeec-------CCCCceeceEEEEEEecccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF--YFID-------MEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~--~~~~-------~~~~~~~~~~v~i~i~~p~~ 138 (139)
+ .++++.+||+|++++|.++++||+||+++|. ..++ .......+.+++|++|+|+.
T Consensus 523 ~-~~~~~~~~~~g~~~~a~~~~~~i~pv~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~pi~ 587 (1146)
T PRK08633 523 T-RNGQLNEFKRGFELIVKGTDVPIIPFYIRGLWGSIFSRASGKFLWRWPTRIPYPVTVAFGKPMP 587 (1146)
T ss_pred C-CCCCccchhHHHHHHHHHCCCCEEEEEEecccccccccccccccccccCCCCceEEEEECCCcC
Confidence 9 8889999999999999999999999999874 1111 11122356789999999984
No 11
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=99.91 E-value=5.9e-24 Score=176.10 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=109.0
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|++|++++...+| +++.|++|+++++.|+++++++..|+++||| ++. .+++++.+.+++ |.+++|||||||
T Consensus 37 ~s~~D~~~l~~~~~--~~~~~~~k~~l~~~~~~~~~~~~~~~i~v~r-~~~----~~~~~~~~~l~~-g~~~~iFPEGtr 108 (718)
T PRK08043 37 VSFLDGILLALFLP--VRPVFAVYTSISQQWYMRWLKPYIDFVPLDP-TKP----MAIKHLVRLVEQ-GRPVVIFPEGRI 108 (718)
T ss_pred CchHHHHHHHHhCC--CCeEEEEeHHHhhhHHHHHHHHhCCEEEecC-CCH----HHHHHHHHHHhC-CCEEEEeCCCcc
Confidence 58999999999998 7888999999999999999999999999999 653 467777777775 559999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCceeecCCC-----CceeceEEEEEEeccccC
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEH-----KRFGYGKCFIYLVQLTIF 139 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~-----~~~~~~~v~i~i~~p~~~ 139 (139)
+ .++.+.+||+|++++|.++++|||||+|.|+..|.... ......++.+++++|+.+
T Consensus 109 ~-~~~~~~~~k~G~~~~a~~~~~pivPv~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 170 (718)
T PRK08043 109 T-VTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQL 170 (718)
T ss_pred C-CCCCccCcchHHHHHHHHCCCCEEEEEEECCccCcccccCCccccccCCceEEEecCcccC
Confidence 9 88999999999999999999999999999884333221 122345799999999754
No 12
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.91 E-value=7e-24 Score=182.45 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=109.4
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|++|++++..++| ++++|++|+++.+.|++|++++..|+++||| +++ +.++++.+.+++ |.+++|||||||
T Consensus 463 ~s~~D~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r-~~~----~~~~~~~~~l~~-g~~~~ifPeGtr 534 (1140)
T PRK06814 463 VSFLDGPLLAAYLP--EEPTFAIDTDIAKAWWVKPFLKLAKALPVDP-TNP----MATRTLIKEVQK-GEKLVIFPEGRI 534 (1140)
T ss_pred cchHHHHHHHHhCC--CCeEEEEeHHHhhhhHHHHHHHhcCeeecCC-CCh----HHHHHHHHHHHC-CCEEEEeCCCCC
Confidence 48999999999999 8899999999999999999999999999999 664 356677787875 559999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCceee--c---CCCCceeceEEEEEEecccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFI--D---MEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~--~---~~~~~~~~~~v~i~i~~p~~ 138 (139)
+ .++.+.+||+|++++|.++++||+||+|+|...+ . ......+++++++++++|+.
T Consensus 535 ~-~~~~~~~f~~g~~~~a~~~~~~i~pv~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 595 (1140)
T PRK06814 535 T-VTGSLMKIYDGPGMIADKAGAMVVPVRIDGLQFTHFSRLKNQVRRKWFPKVTVTILPPVK 595 (1140)
T ss_pred C-CCCCccccchHHHHHHHHCCCCEEEEEEcCcccccccccCCCcccccCCceEEEecCCcc
Confidence 9 9999999999999999999999999999987432 2 11112244689999999985
No 13
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=99.91 E-value=5.2e-24 Score=153.51 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=101.2
Q ss_pred chhhhhhhhhhcc-cCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCch----hhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 3 GFFFLSGLFHVWP-VMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSK----SGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 3 s~~D~~~l~~~~~-~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~----~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
|++|++++..++. ...++++++++++++.|+++++ +++|+| .+.+ ...++++++.+.|++++ +++|||
T Consensus 33 ~~~D~~~l~~~~~~~~~~~~~lak~~l~~~p~l~~~-----~i~v~r-~~~~~~~~~~~~~~~~~~~~L~~G~-~l~IFP 105 (210)
T cd07986 33 GILDGLILADLLGSVRPDVRILANQLLSKIPELRDL-----FIPVDP-LEGRAALAKNRESLREALRHLKNGG-ALIIFP 105 (210)
T ss_pred cchHHHHHHHHHHHhCCCeEEEeHHhhhhCcchHhh-----EEeccC-CCCcchhhhhHHHHHHHHHHHhCCC-EEEEEC
Confidence 3599998876542 1257999999999999999887 599999 6654 56788999999888755 999999
Q ss_pred CCeecCCCCC------ccccccchHHHHHhCCCCEEEEEEeCc-eee--------cC--------CCCceeceEEEEEEe
Q psy12561 78 EGTRNKNPNK------LLPFRKGAFRVAIKHQVPIYPLVYSPF-YFI--------DM--------EHKRFGYGKCFIYLV 134 (139)
Q Consensus 78 EGtr~~~~~~------~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~--------~~--------~~~~~~~~~v~i~i~ 134 (139)
||||+ .++. +.+|++|++++|.++++|||||++.|. ..+ +. ..+..++++++|+||
T Consensus 106 EGtrs-~~~~~~g~~~~~~fk~G~~~lA~~~~~pIvPv~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~g 184 (210)
T cd07986 106 AGRVS-TASPPFGRVSDRPWNPFVARLARKAKAPVVPVYFSGRNSRLFYLAGLIHPTLRTLLLPRELLNKRGKTIRIRVG 184 (210)
T ss_pred Ccccc-cccccCCccccCCccHHHHHHHHHHCCCEEEEEEeeeCcHHHHHHHccCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 99999 5432 589999999999999999999999886 221 10 011225779999999
Q ss_pred cccc
Q psy12561 135 QLTI 138 (139)
Q Consensus 135 ~p~~ 138 (139)
+|+.
T Consensus 185 ~pI~ 188 (210)
T cd07986 185 RPIP 188 (210)
T ss_pred CcCC
Confidence 9985
No 14
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=99.89 E-value=2.6e-22 Score=133.67 Aligned_cols=106 Identities=37% Similarity=0.596 Sum_probs=95.3
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
.|.+|.+++...++ ++++++++.++++.|++++++...|+++|+| ++.++..+.++++.+.++++ .+++|||||++
T Consensus 25 ~s~~D~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~g~~~i~r-~~~~~~~~~~~~~~~~l~~g-~~v~ifPeG~~ 100 (130)
T TIGR00530 25 QSNLDPLTLSAAFP--PPIVFIAKKELKWIPFFGIMLWLTGAIFIDR-ENIRAIATALKAAIEVLKQG-RSIGVFPEGTR 100 (130)
T ss_pred CchhHHHHHHHHcC--CCcEEEEhHHhhhCCHHHHHHHHcCCEEecC-CChHHHHHHHHHHHHHHhCC-CEEEEeCCCCC
Confidence 68899999888887 7899999999999999999999999999999 77566777888888887765 59999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
+ .++...+|+.|++++|.++++||+||.+.
T Consensus 101 ~-~~~~~~~f~~g~~~la~~~~~pvvpv~~~ 130 (130)
T TIGR00530 101 S-RGRDILPFKKGAFHIAIKAGVPILPVVLS 130 (130)
T ss_pred C-CCCCCCCcchhHHHHHHHcCCCEEeEEeC
Confidence 9 88889999999999999999999999873
No 15
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=99.88 E-value=2.5e-22 Score=145.46 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=112.2
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhh-------ccchhHHHHHhcCeEEEEccCCc------------hhhHHHHHHH
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELL-------FVFPFGFVAYLAGVVFISRLSKS------------KSGQQTLDEA 62 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~-------~~p~~g~~~~~~g~i~v~r~~~~------------~~~~~~~~~~ 62 (139)
.|++|+.++..+++ +...++|+++++ ..|++++++...|.++|+| ++. +.+.++++.+
T Consensus 31 ~S~~Dp~ii~~~~~--r~~~~lAk~~lf~ag~~~~~~pl~~~f~~~~~~~pV~r-~k~~~~~P~~~~~k~~~~~~alk~~ 107 (235)
T cd07985 31 QTEADPAVISLLLE--KTHPYLAENMIYVAGDRVVSDPLCKPFSMGRNLLCVHS-KKHIDDPPELKEEKMKANLATLKEM 107 (235)
T ss_pred cccccHHHHHHHhc--cccHHHhhhhheeccccccccHhHHHHHhhCCceeeec-CcccccchhhhhhhhhccHHHHHHH
Confidence 58999999999998 677788888887 8999999999999999999 652 4789999999
Q ss_pred HHHHhcCCcEEEEEeCCeecCCCCCccccccc---------hHHHHHhCCCC--EEEEEEeCceeecCCCC---------
Q psy12561 63 AERLFKENAKMLIFPEGTRNKNPNKLLPFRKG---------AFRVAIKHQVP--IYPLVYSPFYFIDMEHK--------- 122 (139)
Q Consensus 63 ~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G---------~~~la~~~~~p--VvPv~i~g~~~~~~~~~--------- 122 (139)
.+.|++|+..++|||||||+ +.+....+.+| +..+|.++++| |+|++|.+++.++....
T Consensus 108 ~~lLk~G~~~i~IfPEGtR~-r~~~~g~~~p~~Fd~~~~~~~~~La~~s~~p~hi~Plai~~ydi~Ppp~~v~~~ige~r 186 (235)
T cd07985 108 QQLLNEGGQLIWVAPSGGRD-RPDANGEWYPDPFDPSAVEMMRLLAQKSRVPTHLYPMALLTYDIMPPPKQVEKEIGEKR 186 (235)
T ss_pred HHHHHcCCeEEEEcCCCCCC-CCCCCCCccCCccchHHHHHHHHHHHhcCCCceEEeeEEEeecccCCCccccccccccc
Confidence 99998877558999999999 65445666666 66999999999 99999997777777433
Q ss_pred ceeceEEEEEEeccccC
Q psy12561 123 RFGYGKCFIYLVQLTIF 139 (139)
Q Consensus 123 ~~~~~~v~i~i~~p~~~ 139 (139)
..+...+.|.+|+|+.|
T Consensus 187 ~~~f~~v~i~vg~~i~~ 203 (235)
T cd07985 187 AVAFTGVGLAVGEEIDF 203 (235)
T ss_pred cccccceEEEecCCccc
Confidence 34667899999999875
No 16
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=99.87 E-value=2.8e-22 Score=144.53 Aligned_cols=123 Identities=20% Similarity=0.085 Sum_probs=97.7
Q ss_pred chh-hhhhhhhh-c--ccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 3 GFF-FLSGLFHV-W--PVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 3 s~~-D~~~l~~~-~--~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
|++ |.+++... . ...++++++++.+++..|+++++++..|+++++| + ++.+.|++ |.+++||||
T Consensus 30 s~~~D~~~l~~~~~~~~~~~~~~~la~~~~~~~p~~~~~~~~~g~i~~~r-~----------~~~~~L~~-G~~l~ifPe 97 (212)
T cd07987 30 GLPIDGALLAAAFLLLFPGRLPRALADHFLFPLPGLRDLLRRLGAVPGSR-E----------NCVRLLRE-GELVLIFPG 97 (212)
T ss_pred chhHHHHHHHHHHHHhCCCCeeEEeecccceeCccHHHHHHHcCCcccCH-H----------HHHHHhcC-CCEEEEEcC
Confidence 566 99998876 1 1126789999999999999999999999999988 3 23555655 559999999
Q ss_pred CeecCCC-------CCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCC--------------ceeceEEEEEEecc
Q psy12561 79 GTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHK--------------RFGYGKCFIYLVQL 136 (139)
Q Consensus 79 Gtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~--------------~~~~~~v~i~i~~p 136 (139)
|||+ .. ..+.++++|++++|.++++|||||++.|. +.|+.... ..++.++++.+|+|
T Consensus 98 Gtr~-~~~~~~~~~~~~~~~~~G~~~lA~~~~~pIvPv~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~i~v~~G~P 176 (212)
T cd07987 98 GARE-ALKSKREEYYLLWKKRKGFARLALRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEP 176 (212)
T ss_pred CHHH-HhccCCCeEEEEECCCcCHHHHHHHcCCCeEeEEEeCcHHHHhhhccCCCCceeehhceeccCCCCcceEEeCCC
Confidence 9997 32 23679999999999999999999999988 67664321 12345899999999
Q ss_pred cc
Q psy12561 137 TI 138 (139)
Q Consensus 137 ~~ 138 (139)
+.
T Consensus 177 i~ 178 (212)
T cd07987 177 IV 178 (212)
T ss_pred cc
Confidence 86
No 17
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=99.87 E-value=2.7e-21 Score=126.15 Aligned_cols=109 Identities=39% Similarity=0.595 Sum_probs=97.7
Q ss_pred cchhhhhhhhhhccc-CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCe
Q psy12561 2 YGFFFLSGLFHVWPV-MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGT 80 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~-~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGt 80 (139)
.|.+|.+++...++. .++..+++++.+++.|++++++...|+++++| +..+.+.+.++++.+.+++ |.+++|||||+
T Consensus 8 ~s~~D~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~l~~-~~~~~ifPeG~ 85 (118)
T smart00563 8 QSFLDPLVLSALLPRKGGRVRFVAKKELFYVPLLGWLLRLLGAIFIDR-ENGRLARAALREAVRLLRD-GGWLLIFPEGT 85 (118)
T ss_pred CchHHHHHHHHHcccccCceEEEeHHHHhhccHHHHHHHHCCCeEEeC-CCcHHHHHHHHHHHHHHhC-CCEEEEeCCcc
Confidence 578999999999871 13699999999999999999999999999999 7766889999999887775 55999999999
Q ss_pred ecCCCCCccccccchHHHHHhCCCCEEEEEEeC
Q psy12561 81 RNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 81 r~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g 113 (139)
++ +.....++++|++++|.+++++|+|+++.|
T Consensus 86 ~~-~~~~~~~~~~g~~~la~~~~~~v~Pv~~~~ 117 (118)
T smart00563 86 RS-RPGKLLPFKKGAARLALEAGVPIVPVAIRG 117 (118)
T ss_pred cC-CCCCcCCCcccHHHHHHHcCCCEEeEEEec
Confidence 99 777888999999999999999999999987
No 18
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=99.86 E-value=4.4e-21 Score=158.53 Aligned_cols=134 Identities=20% Similarity=0.219 Sum_probs=107.5
Q ss_pred cchhhhhhhhhhccc--CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCc--hhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPV--MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKS--KSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~--~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~--~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
-|++|++++.++++. ...++++++.++ +.|++|++++.+|+++|+| +.+ ......++++.+.+.++|.++.+||
T Consensus 276 rS~lD~lll~~~l~~~gl~~~~i~Ag~~L-~~~~lG~llr~~Ga~fIrR-~~~~~~ly~~vl~eyi~~Ll~~G~~v~iFp 353 (783)
T PRK03355 276 RSYIDGLVVPVAMQENRLPPVHVFGGINL-SFGPMGPIMRRSGMIFIRR-NIGDDPLYKYVLREYVGYLVEKRFNLSWYI 353 (783)
T ss_pred CcchHHHHHHHHHhhcCCCCcEEEeHHHh-ccHHHHHHHHHcCcEEecC-CCCchHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 489999999998852 145778888887 5888999999999999999 653 2336788898999887788999999
Q ss_pred CCeecCCCCCccccccchHHHHH-------hCCCCEEEEEEeCceeecCC--------C-Cc----------------ee
Q psy12561 78 EGTRNKNPNKLLPFRKGAFRVAI-------KHQVPIYPLVYSPFYFIDME--------H-KR----------------FG 125 (139)
Q Consensus 78 EGtr~~~~~~~~~~k~G~~~la~-------~~~~pVvPv~i~g~~~~~~~--------~-~~----------------~~ 125 (139)
||||| +++++.++|.|+..++. ..++|||||+|.|-++.+.+ . +. .+
T Consensus 354 EGTRS-rtGkLl~pK~Gll~~~~~a~~~~~~~~v~IVPV~I~Yd~v~E~~~y~~e~~G~~k~~esl~~~~~~~~~l~~~~ 432 (783)
T PRK03355 354 EGTRS-RTGKLLPPKLGLLSYVADAYLDGRSDDVLLQPVSISFDQLHEIGEYAAEARGGEKTPEGLRWLYNYIKAQGERN 432 (783)
T ss_pred cCCCC-CCCCCCcccccHHHHHHHHHHhcccCCCEEEEEEEEecccccchhHHHHhcCCCcccccHHHHHHHHHHhccCC
Confidence 99999 99999999999977664 57999999999865443322 1 10 13
Q ss_pred ceEEEEEEecccc
Q psy12561 126 YGKCFIYLVQLTI 138 (139)
Q Consensus 126 ~~~v~i~i~~p~~ 138 (139)
.++++|+||+|+.
T Consensus 433 ~G~i~V~fGePis 445 (783)
T PRK03355 433 YGKIYVRFGEPVS 445 (783)
T ss_pred ceeEEEEECCCCC
Confidence 4899999999986
No 19
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=99.85 E-value=9.7e-21 Score=134.15 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=102.4
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
.|.+|+.++... + .++.+++++.. ..|+++++++..|+++|+| ++.....++++++.+.+++++ +++|||||++
T Consensus 35 ~s~l~~~~~~~~-~--~~~~~v~~~~~-~~~~~~~~~~~~g~~~i~r-~~~~~~~~~~~~~~~~lk~g~-~v~ifpeG~r 108 (189)
T cd07983 35 GRLLLMPYLFRR-R--KRIAALISRSK-DGEIIARVLERLGIRVVRG-SSSRGGAAALREMLRALKDGY-NIAITPDGPR 108 (189)
T ss_pred chHHHhHHHhcc-C--CCeEEEEecCc-CHHHHHHHHHHhCCCEEEc-CCCCcHHHHHHHHHHHHhCCC-EEEEcCCCCC
Confidence 467788776554 4 57888888754 5789999999999999999 776677889999999998754 9999999998
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCceeecCCCCce-----eceEEEEEEecccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRF-----GYGKCFIYLVQLTI 138 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~~~~-----~~~~v~i~i~~p~~ 138 (139)
+ .. .++++|++++|.++++||+|+++.+...|....+.. ..++++|.+++|+.
T Consensus 109 ~-~~---~~~~~G~~~lA~~~~~pIvPv~i~~~~~~~~~~~~~~~~p~~~~~~~v~~~~pi~ 166 (189)
T cd07983 109 G-PR---YKVKPGVILLARKSGAPIVPVAIAASRAWRLKSWDRFIIPKPFSRVVIVFGEPIH 166 (189)
T ss_pred C-cc---eecchHHHHHHHHhCCCEEEEEEEEEccEeccCccccccCCCCcceEEEEeCCEe
Confidence 7 43 479999999999999999999998874455443321 23679999999985
No 20
>PLN02783 diacylglycerol O-acyltransferase
Probab=99.85 E-value=1.6e-21 Score=147.95 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=94.0
Q ss_pred cchhhhhhhh-----hhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 2 YGFFFLSGLF-----HVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 2 ~s~~D~~~l~-----~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
.|.+|..++. .++| .+++++++++++++.|++|++++.+|++++|| ++ +.+.|+ +|.+++||
T Consensus 110 ~S~ldi~~~~~~~~~~~~p-~~~~~~lak~~lf~iP~~g~~~~~~G~ipv~R-~~----------~~~~Lk-~G~sv~If 176 (315)
T PLN02783 110 HSVLPIGVIALADLSGFLP-LPKIRALASSAVFYTPFLRHIWTWLGLDPASR-KN----------FTSLLK-AGYSCIIV 176 (315)
T ss_pred CcchhhHHHhhhhhhhccC-CCchHHHhhhhhccCcHHHHHHHHcCCeEEcH-HH----------HHHHHh-CCCEEEEE
Confidence 5788876532 2344 14789999999999999999999999999999 43 234555 46699999
Q ss_pred eCCeec----C--CCCCccccccchHHHHHhCCCCEEEEEEeCc-ee---ecCCCC-----------------------c
Q psy12561 77 PEGTRN----K--NPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YF---IDMEHK-----------------------R 123 (139)
Q Consensus 77 PEGtr~----~--~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~---~~~~~~-----------------------~ 123 (139)
|||+|. . .+....++|+|++++|.++|+|||||++.|. +. |..... .
T Consensus 177 PeGtre~~~~~~~~~~~~~~~k~G~~~lA~~~g~PIVPv~i~G~~~~~~~~~~~~~~~~~l~r~~~~~p~~~wg~~~~pi 256 (315)
T PLN02783 177 PGGVQECLYMEHGSEVAYLKSRKGFVKIAMETGAPLVPVFCFGQTRAYKWWKPGGPLVPKLSRAIGFTPIVFWGRYGSPI 256 (315)
T ss_pred cCCchhhcccCCCccccccCCCCcHHHHHHHcCCCEEEEEEECchhhhhhhcCCccHHHHHHHhcCcCceeeecccCccc
Confidence 999983 0 2223468999999999999999999999985 32 222110 1
Q ss_pred eeceEEEEEEeccccC
Q psy12561 124 FGYGKCFIYLVQLTIF 139 (139)
Q Consensus 124 ~~~~~v~i~i~~p~~~ 139 (139)
.++.++++.+|+|+++
T Consensus 257 P~~~~i~vvvG~PI~v 272 (315)
T PLN02783 257 PHRTPMHVVVGKPIEV 272 (315)
T ss_pred CCCceEEEEecCCccC
Confidence 1456899999999864
No 21
>PLN02833 glycerol acyltransferase family protein
Probab=99.85 E-value=9.6e-21 Score=146.40 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=97.5
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhH-HHHHhcCeEEEEccCCchhhHHHHHHHHHHHhc-CCcEEEEEeCC
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFG-FVAYLAGVVFISRLSKSKSGQQTLDEAAERLFK-ENAKMLIFPEG 79 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g-~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~-~g~~v~iFPEG 79 (139)
-|++|++++.+..| ..++++++..+.++++ ++++..|+++||| ++.++..+..+.+.+.+++ +|.+++|||||
T Consensus 172 ~S~lDi~vL~s~~p----~~~v~kk~~~~~~~~~~~~~~~~g~I~VdR-~~~~~~~~~~~~l~~~l~~~~G~~llIFPEG 246 (376)
T PLN02833 172 TSMIDFIVLEQMTP----FAVIMQKHPGWVGFLQNTILESVGCIWFNR-TEAKDREVVAKKLRDHVQDPDRNPLLIFPEG 246 (376)
T ss_pred CChHHHHHHHhhcC----ceEEEEehhhhhHHHHHHHHHHcCcEEecC-CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 48999999998876 4577888877776654 8899999999999 7765555556666666653 56799999999
Q ss_pred eecCCCCCccccccchHHHHHhCCCCEEEEEEeCce-----eecCC--CCc--------eeceEEEEEEecccc
Q psy12561 80 TRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFY-----FIDME--HKR--------FGYGKCFIYLVQLTI 138 (139)
Q Consensus 80 tr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~-----~~~~~--~~~--------~~~~~v~i~i~~p~~ 138 (139)
||+ +++.+.+||+|++. .++||+||+|.|.. .|... ++. ..+..++|+++||+.
T Consensus 247 Trs-~~~~l~~FK~Gaf~----~g~pI~PVaI~y~~~~~~~fW~s~~~s~~~~l~~ll~~~~~~v~V~~LpPi~ 315 (376)
T PLN02833 247 TCV-NNEYTVMFKKGAFE----LGCTVCPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQT 315 (376)
T ss_pred ccc-CCCcccccchhhHh----cCCeEEEEEEEecCcccccccCCCCccHHHhHHHHhCCCceEEEEEECCCcC
Confidence 999 88899999999875 69999999998763 23211 110 135689999999964
No 22
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=99.85 E-value=2.8e-22 Score=133.84 Aligned_cols=108 Identities=35% Similarity=0.534 Sum_probs=70.7
Q ss_pred cchhhhhhhhhhcccC--CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCC
Q psy12561 2 YGFFFLSGLFHVWPVM--RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEG 79 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~--~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEG 79 (139)
.|.+|.+++..++... +++.+++++++.+.|+++++++..|+++++| ++..++...++.+.+.+++++ +++|||||
T Consensus 23 ~s~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~i~r-~~~~~~~~~~~~~~~~l~~~~-~i~ifPEG 100 (132)
T PF01553_consen 23 QSWLDGFALMALLQRSGPRRPRFVAKDELFKIPFLGWFLRRLGFIPIDR-SNRKKNRKALKDIKEILRKGG-SIVIFPEG 100 (132)
T ss_dssp --TTHHHHHHHHHTTT-HHH-EEEEECHHHH-TTTHHHHHEEEEE--CC-HHHHHHHHHHHHHHHHHHC----EEE-TT-
T ss_pred CCCCcchheeehhhhhccccceeEeeeccccchhhhhhhhhccceeeee-ecccccchhHHHHHHHhhhcc-eeeecCCc
Confidence 4779999999888322 5799999999999999999999999999999 787888999999999888766 79999999
Q ss_pred eecCCCCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 80 TRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 80 tr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
+++ ++.++.++++|++++|.+++++||||+|.
T Consensus 101 ~~~-~~~~~~~~~~G~~~~a~~~~~~ivPv~i~ 132 (132)
T PF01553_consen 101 TRS-RSGELLPFKKGAFHIALKAKVPIVPVAIS 132 (132)
T ss_dssp S----B--B----HHHHHHHHHH----------
T ss_pred cCc-CCCccCCccHHHHHHHHHcCCccccccCC
Confidence 999 87788999999999999999999999874
No 23
>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.
Probab=99.84 E-value=1.4e-20 Score=156.37 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=104.6
Q ss_pred chhhhhhhhhhcccC--CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchh--hHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 3 GFFFLSGLFHVWPVM--RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKS--GQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 3 s~~D~~~l~~~~~~~--~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~--~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
|++|++++.+++... ..++++++.++ +.|++|++++..|+++|+| +.+.+ ..+.+++..+.+.++|.++.||||
T Consensus 302 S~lD~llL~~~l~~~~l~~p~iaag~nL-~~p~~g~llr~~GaffIrR-~~~~~~ly~~vl~eyi~~ll~~G~~v~iFpE 379 (799)
T TIGR03703 302 SHMDYLLLSYVLYHEGLVPPHIAAGINL-NFWPAGPIFRRGGAFFIRR-SFKGNKLYSAVFREYLHELFAKGYSVEYFVE 379 (799)
T ss_pred CchHHHHHHHHHhhcCCCCceEEechhh-ccHHHHHHHHHCCceEeec-CCCcchhHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 899999999887521 12455566655 7999999999999999999 76432 256677877777777779999999
Q ss_pred CeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCceeecCC-----------------------CCceeceE
Q psy12561 79 GTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYFIDME-----------------------HKRFGYGK 128 (139)
Q Consensus 79 Gtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~~~~~-----------------------~~~~~~~~ 128 (139)
|||+ +++++.++|.|+++++.++ +++||||+|.|.++.+.. ....+.++
T Consensus 380 GtRS-rtGkll~pK~G~l~~a~~a~~~~~~~~v~IVPVsI~Yekv~E~~~y~~El~G~~K~kEsl~~~l~~~~~l~~~G~ 458 (799)
T TIGR03703 380 GGRS-RTGRLLPPKTGMLAMTLQAMLRGIRRPITLVPVYIGYEHVMEVATYLKELRGKRKEKESVFGVLKTLRKLRNFGQ 458 (799)
T ss_pred CCcC-CCCCccchHHHHHHHHHHHhhccCCCCcEEEEEEEecccccchhHHHHHhcCCCccccCHHHHHHHHhccCCCce
Confidence 9999 9999999999999999876 899999999775433221 11124789
Q ss_pred EEEEEecccc
Q psy12561 129 CFIYLVQLTI 138 (139)
Q Consensus 129 v~i~i~~p~~ 138 (139)
++|+||+|+.
T Consensus 459 i~V~FGePIs 468 (799)
T TIGR03703 459 GYVNFGEPIN 468 (799)
T ss_pred EEEEeCCCcc
Confidence 9999999984
No 24
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=99.84 E-value=1.5e-20 Score=156.40 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=106.0
Q ss_pred cchhhhhhhhhhccc-CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhh--HHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 2 YGFFFLSGLFHVWPV-MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSG--QQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~-~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~--~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
-|++|++++.+++.. .-.+.++++.++++.|++|++++..|+++|+| +.+... .+.++++.+.+.++|.++.||||
T Consensus 311 rS~lD~llL~~~l~~~gl~~p~iAagenl~~p~lg~llr~~GaffIrR-~~~~~~ly~~vl~~yi~~ll~~G~~v~iFpE 389 (818)
T PRK04974 311 RSHMDYLLLSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRGGAFFIRR-SFKGNKLYSTVFREYLGELFARGYSVEYFVE 389 (818)
T ss_pred CCchHHHHHHHHHhhcCCCCceEEehHHhcchHHHHHHHHCCceEeeC-CCCchHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 389999999988861 11255677777789999999999999999999 754333 36777777777767779999999
Q ss_pred CeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCceeecCCC-------------C----------ceeceE
Q psy12561 79 GTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYFIDMEH-------------K----------RFGYGK 128 (139)
Q Consensus 79 Gtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~~~~~~-------------~----------~~~~~~ 128 (139)
|||+ +++++.++|.|++.+|.++ +++||||+|.|-++.+... . ..+.++
T Consensus 390 GtRS-RtGkllppK~G~l~~a~~a~~~~~~~dv~IVPVsIsYekv~E~~~y~~el~G~~K~kEsl~~il~~i~~~~~~G~ 468 (818)
T PRK04974 390 GGRS-RTGRLLQPKTGMLAMTLQAMLRGSRRPITLVPVYIGYEHVMEVGTYAKELRGAPKEKESLFQVLRGIRKLRNFGQ 468 (818)
T ss_pred CCcC-CCCCCcchhhhHHHHHHHHhhcccCCCcEEEEEEEeccchhhhHHHHHHhcCCCCcCcCHHHHHHHHhhcCCCce
Confidence 9999 9999999999999999887 4899999997743322210 0 114689
Q ss_pred EEEEEecccc
Q psy12561 129 CFIYLVQLTI 138 (139)
Q Consensus 129 v~i~i~~p~~ 138 (139)
++|+||+|+.
T Consensus 469 v~V~FGePis 478 (818)
T PRK04974 469 GYVNFGEPIP 478 (818)
T ss_pred EEEEeCCCcc
Confidence 9999999984
No 25
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=99.84 E-value=1.3e-19 Score=127.36 Aligned_cols=133 Identities=32% Similarity=0.419 Sum_probs=113.2
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
+|.+|.+.+..... .+..+++++.+++.|+++++++..|++++++ .+.+.+...++++.+.+++++ .+++||||++
T Consensus 33 ~~~~D~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~l~~g~-~l~i~peg~~ 108 (184)
T cd07989 33 QSYLDPLVLGAALP--RPIRFVAKKELFKIPFLGWLLRLLGAIPIDR-GNGRSAREALREAIEALKEGE-SVVIFPEGTR 108 (184)
T ss_pred cchHHHHHHHhhcc--CceEEEEhHHhhhCchHHHHHHHCCeEEEec-CCchhHHHHHHHHHHHHHCCC-EEEEecCccc
Confidence 57889987777664 6789999999988999999999999999999 776567888999999888655 9999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCceeceEEEEEEeccccC
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRFGYGKCFIYLVQLTIF 139 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~~~~~v~i~i~~p~~~ 139 (139)
+ ..+...+|++|++++|.++++||+|+++.+. ..++.........+++|++++|+..
T Consensus 109 ~-~~~~~~~~~~g~~~lA~~~~~~Vvpv~~~~~~~~~~~~~~~~~~~~~~i~~~~pi~~ 166 (184)
T cd07989 109 S-RDGELLPFKSGAFRLAKEAGVPIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPP 166 (184)
T ss_pred C-CCCCcCCCcccHHHHHHHcCCCEEeEEEeChhhhCcCCCCcCCCCcEEEEEcCCcCh
Confidence 9 7788999999999999999999999999987 5555444444566899999999863
No 26
>PRK14014 putative acyltransferase; Provisional
Probab=99.83 E-value=4.8e-20 Score=139.25 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=93.0
Q ss_pred chhhhhhhhhhcccC-CceEEEEchhhhccchhHHHHHhcCeEEEEccCCch----------hhHHHHHHHHHHHhcCCc
Q psy12561 3 GFFFLSGLFHVWPVM-RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSK----------SGQQTLDEAAERLFKENA 71 (139)
Q Consensus 3 s~~D~~~l~~~~~~~-~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~----------~~~~~~~~~~~~l~~~g~ 71 (139)
|.+|++++..+++.. ..++|++|+++++.|++|+.+..+|+++++| .+++ .+.++++++.+.+++++.
T Consensus 97 S~~D~l~l~~~~~~~~~~~kfv~K~eL~~iP~~G~~~~~~~~ifi~R-~~~~~~~~~p~~~~~d~~~~~~a~~~~~~~~~ 175 (301)
T PRK14014 97 SWVDILVLQYVFNRRIPMLKFFLKQELIWVPFLGLAWWALDFPFMKR-YSKAYLAKNPELKGKDLETTRRACEKFKRMPT 175 (301)
T ss_pred cHHHHHHHHHHHhhccCceEEEehHHhhhcccHHHHHHHcCCeEEec-cchhhhhhchhhhhhHHHHHHHHHHHHhcCCc
Confidence 789999998888622 2479999999999999999999999999999 6532 236677788888887778
Q ss_pred EEEEEeCCeecCCCC----------CccccccchHHHHHhCC----CCEEEEEEeCc
Q psy12561 72 KMLIFPEGTRNKNPN----------KLLPFRKGAFRVAIKHQ----VPIYPLVYSPF 114 (139)
Q Consensus 72 ~v~iFPEGtr~~~~~----------~~~~~k~G~~~la~~~~----~pVvPv~i~g~ 114 (139)
+++|||||||+ +++ .++++|.|++.+|.++. .+|+||+|.|.
T Consensus 176 ~l~IFPEGTR~-t~~k~~~~~~~~~~lL~pk~ggf~~a~~~~~~~~~~I~dvti~y~ 231 (301)
T PRK14014 176 TIVNFVEGTRF-TPEKHQQQQSPYQHLLKPKAGGIAFALNAMGEQFDGLLDVTIVYP 231 (301)
T ss_pred EEEEeccceec-CcccccccCCCcccccCCCCccHHHHHHhhhccCCEEEEEEEEeC
Confidence 99999999997 433 67899999999999986 78999999976
No 27
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=99.80 E-value=1.1e-18 Score=122.86 Aligned_cols=125 Identities=26% Similarity=0.325 Sum_probs=100.8
Q ss_pred cchhhhhhhhhhcc--cCCceEEEEchhhh-ccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 2 YGFFFLSGLFHVWP--VMRDVAAVSKKELL-FVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 2 ~s~~D~~~l~~~~~--~~~~~~~v~~~~~~-~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
.|.+|.+++...+. ...++.++++.... ..|++ +..|.++++| .+.....+.++.+.+.++++|.+++||||
T Consensus 35 ~s~~D~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~g~~~i~r-~~~~~~~~~~~~~~~~l~~~g~~v~ifPe 109 (187)
T cd06551 35 SSWWDGLILFLLLERGLRRDVYGLMDEELLERYPFF----TRLGAFSVDR-DSPRSAAKSLKYVARLLSKPGSVVWIFPE 109 (187)
T ss_pred hhhHHHHHHHHHHHhccCCCeEEEEcHhhhhhChHH----hhcCeEEecC-CChhhHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 57899988887762 12578899998887 34444 4559999999 77656778899999988873569999999
Q ss_pred CeecCCCC-CccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCceeceEEEEEEecccc
Q psy12561 79 GTRNKNPN-KLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 79 Gtr~~~~~-~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
|+++ ... ...++++|++++|.++++||+|+++.+. ..+ ....++++.+++|+.
T Consensus 110 G~~~-~~~~~~~~~~~g~~~la~~~~~~IvPv~i~~~~~~~------~~~~~~~i~~~~pi~ 164 (187)
T cd06551 110 GTRT-RRDKRPLQFKPGVAHLAEKAGVPIVPVALRYTFELF------EQFPEIFVRIGPPIP 164 (187)
T ss_pred cccC-CCCCCcccccchHHHHHHHcCCcEEEEEEecccccc------CCCCcEEEEECCCcc
Confidence 9999 655 7889999999999999999999999886 333 234589999999975
No 28
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=99.80 E-value=3.9e-19 Score=148.09 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=108.1
Q ss_pred cchhhhhhhhhhccc--CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchh--hHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPV--MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKS--GQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~--~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~--~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
-|++|++++.+.+.. ...++++++.++++.|++|+++++.|+++|+| +.+.+ ....+++....+.++|.++.+||
T Consensus 638 RS~lDyLLLsyvL~~~GL~~P~IAAGdNLL~~P~LG~LLR~~GAFFIRR-sf~~d~LYsAVLreYI~~LLk~G~sVeiFp 716 (1108)
T PTZ00374 638 RSYIDFIIMTYLLAVMGLPLPHVCAGDDFLRMGPIATLMRGSGAFFMRR-SFRDDPLYAALFKEYVRHLVLRRRPLEFFI 716 (1108)
T ss_pred ccchHHHHHHHHHHhCCCCceEEEEchhhhcchHHHHHHHHCCeEEEeC-CCCchHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 388999999888741 24578999999999999999999999999999 76432 23455777666666778999999
Q ss_pred CCeecCCCCCccccccchHHHHHhC---------CCCEEEEEEeCceeecCC----------C--------------Cce
Q psy12561 78 EGTRNKNPNKLLPFRKGAFRVAIKH---------QVPIYPLVYSPFYFIDME----------H--------------KRF 124 (139)
Q Consensus 78 EGtr~~~~~~~~~~k~G~~~la~~~---------~~pVvPv~i~g~~~~~~~----------~--------------~~~ 124 (139)
||||+ +++++.++|.|+.+++.++ +++||||+|.|-.+.+.. + +..
T Consensus 717 EGTRS-RTGKLLpPK~GlLkmalda~l~g~~~v~dV~IVPVSIsYErVlE~elyakEl~G~kK~kEsl~~llk~ir~L~~ 795 (1108)
T PTZ00374 717 EGTRS-RTGKTMAPKLGLLKFICDTFYEGQQELDDVLIIPVSLSYDELLETTLYAKEQLGVSKPKENPGNLLRARSLLKR 795 (1108)
T ss_pred CcCcC-CCCCcccchhhHHHHHHHHHhhcccCCCCCEEEEEEEehhhhhhHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Confidence 99999 9999999999999999876 899999999986433221 0 012
Q ss_pred eceEEEEEEecccc
Q psy12561 125 GYGKCFIYLVQLTI 138 (139)
Q Consensus 125 ~~~~v~i~i~~p~~ 138 (139)
+.++++|+||+|+.
T Consensus 796 ~~GrV~V~FGEPIS 809 (1108)
T PTZ00374 796 RHGKIHVHIGEPVS 809 (1108)
T ss_pred cCceEEEECCCCcc
Confidence 46899999999985
No 29
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=99.68 E-value=2.1e-16 Score=126.30 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=88.5
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
|++|++++...++ +++.+++. ++ ..+++++..++++++|| ++. .+.++++ +.++ +| .++|||||||+
T Consensus 311 S~lD~~~l~~al~--~~~~~v~~-~~---~~l~~~l~~i~~~~ldR-~r~-~~~~~~~---~lL~-~g-~lvIFPEGTrs 377 (497)
T PLN02177 311 TVLDPVVTAVALG--RKISCVTY-SI---SKFSELISPIKAVALSR-ERE-KDAANIK---RLLE-EG-DLVICPEGTTC 377 (497)
T ss_pred CcchHHHHHHHcC--CCeEEEee-hH---HHHHHHHHhcCEEEEeC-CCh-HHHHHHH---HHHh-cC-CEEECcCcCCC
Confidence 7899999999998 77888884 22 33688999999999999 663 2333333 3333 46 68999999999
Q ss_pred CCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCCCc-----------eec-eEEEEEEecccc
Q psy12561 83 KNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEHKR-----------FGY-GKCFIYLVQLTI 138 (139)
Q Consensus 83 ~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~~~-----------~~~-~~v~i~i~~p~~ 138 (139)
+++.+.+|+.|++.++ +|||||+|+++ ..++..... ..| ..++|++++|+.
T Consensus 378 -~~~~l~~Fk~~fa~l~----~pIVPVAI~~~~~~f~~~t~~~~~~~d~~~~~~~p~~~y~V~fL~~l~ 441 (497)
T PLN02177 378 -REPFLLRFSALFAELT----DRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEITFLNQLP 441 (497)
T ss_pred -CCCCcchHHHHHHHHC----CcEEEEEEEcccccccccccccceecchhhhhcCCCceEEEEECCCCC
Confidence 8888999999887766 59999999987 666543211 122 359999999974
No 30
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=99.66 E-value=2e-16 Score=112.61 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=70.4
Q ss_pred cchhhhhhhhhhcccC---CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcC--CcEEEEE
Q psy12561 2 YGFFFLSGLFHVWPVM---RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE--NAKMLIF 76 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~---~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~--g~~v~iF 76 (139)
-|.+|++++.+++... ++++|++|+++++.|++||++...|.++++| ++ ..+.+.+++..+.+++. +.+++||
T Consensus 33 ~s~~D~~~~~~~~~~~~~~~~~~~v~K~~l~~~p~~g~~~~~~~~i~v~R-~~-~~d~~~i~~~~~~l~~~~~~~~lviF 110 (193)
T cd07990 33 RSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIFLKR-KW-EKDEKTIKRQLKRLKDSPEPFWLLIF 110 (193)
T ss_pred CcccCHHHHHHHHHHcCccceEEeeehhhhhcCChhhHHHhhCeeEEEEC-Ch-HHhHHHHHHHHHHHhcCCCCcEEEEe
Confidence 4889999998888532 3689999999999999999999999999999 65 35677888888888874 6799999
Q ss_pred eCCeecCCCCC
Q psy12561 77 PEGTRNKNPNK 87 (139)
Q Consensus 77 PEGtr~~~~~~ 87 (139)
|||||. +++.
T Consensus 111 PEGTr~-~~~~ 120 (193)
T cd07990 111 PEGTRF-TEEK 120 (193)
T ss_pred CcccCC-CHHH
Confidence 999999 6543
No 31
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=99.66 E-value=7.2e-16 Score=119.36 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=83.5
Q ss_pred cchhhhhhhhhhcc---cCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcC--CcEEEEE
Q psy12561 2 YGFFFLSGLFHVWP---VMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE--NAKMLIF 76 (139)
Q Consensus 2 ~s~~D~~~l~~~~~---~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~--g~~v~iF 76 (139)
-|.+|.+++..+.. ...++++++|++++++|++||.++.+|.|+++| +.. .+.+.++++.+.+++. +.+++||
T Consensus 101 ~S~~D~l~l~~l~~r~~~~~~~kfv~K~eL~~iP~~Gw~~~~~g~I~v~R-~~~-~D~~~l~~~l~~lk~~~~~~~LvIF 178 (374)
T PLN02510 101 RTEVDWMYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVER-KWE-VDEPNIRQMLSSFKDPRDPLWLALF 178 (374)
T ss_pred CchHHHHHHHHHHHhcCCCcccEEEEeHHHhhchHHHHHHHHcCCeeeeC-Ccc-ccHHHHHHHHHHHhccCCCcEEEEe
Confidence 47899988765542 125799999999999999999999999999999 653 4568888888888753 3589999
Q ss_pred eCCeecCCCCCccccccchHHHHHhCCCCEEEEEE
Q psy12561 77 PEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 77 PEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i 111 (139)
|||||. .++ .+.|..++|+++|+|++.-.+
T Consensus 179 PEGTR~-t~~----~~~~s~~~A~k~glPil~~vL 208 (374)
T PLN02510 179 PEGTDY-TEA----KCQRSQKFAAEHGLPILNNVL 208 (374)
T ss_pred CCcCCC-Ccc----ccchHHHHHHHcCCCcceeEE
Confidence 999999 655 357788999999999876665
No 32
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=99.63 E-value=1.3e-15 Score=120.41 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=87.6
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
|++|++++...++. ++++++ .+.+|+++|+++.++++++|| ++. .+.+++ +.+.++| .++|||||||+
T Consensus 337 S~LDPi~L~~Al~r-r~I~~m----tFsip~lg~lL~~i~ti~VdR-dr~-~D~~aI----~~LLk~G-dlVIFPEGTRs 404 (525)
T PLN02588 337 TLLDPLYISYALRK-KNIKAV----TYSLSRLSELLAPIKTVRLTR-DRV-KDGQAM----EKLLSQG-DLVVCPEGTTC 404 (525)
T ss_pred chhhHHHHHHHccc-CcceEE----EEEhHHHHHHHHhcCceeecC-CCc-chHHHH----HHHHhCC-CEEEccCcccc
Confidence 78999999999851 446666 346788999999999999999 663 344444 3344456 48899999999
Q ss_pred CCCCCccccccchHHHHHhCCCCEEEEEEeCceeecCC----CC------c--e-eceEEEEEEecccc
Q psy12561 83 KNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDME----HK------R--F-GYGKCFIYLVQLTI 138 (139)
Q Consensus 83 ~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~----~~------~--~-~~~~v~i~i~~p~~ 138 (139)
+++.+.+|+.|++.++ .+||||+|.+...+..+ .+ + . .....+|++++++.
T Consensus 405 -r~g~LlrFk~l~A~la----~~IVPVAI~~~~~~f~gtt~~g~k~~D~~~fl~nP~p~y~V~fL~~v~ 468 (525)
T PLN02588 405 -REPYLLRFSPLFSEVC----DVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVQLLDPVS 468 (525)
T ss_pred -CCCcccChhhhHHHhc----CceeeEEEEEeccccceeecCCCcccceeEEEecCCceEEEEEcCcCC
Confidence 8999999999988876 77999999875222221 11 1 1 33468999998863
No 33
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=99.63 E-value=1.2e-15 Score=120.53 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=90.5
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCee
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR 81 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr 81 (139)
-|++|++++...++ +++.+++ ++ .+.++++++.+++++++| +.. .+.++++ +.|+ +|. ++|||||||
T Consensus 297 ~S~lDp~~l~~al~--R~v~~va---y~-~~~ls~ll~~i~avrv~R-~r~-~d~~air---~lL~-~G~-lvIFPEGTr 363 (498)
T PLN02499 297 RTLMDPVVLSTVLG--RSIPAVT---YS-ISRLSEILSPIPTVRLTR-IRD-VDAEKIK---RELA-RGD-LVVCPEGTT 363 (498)
T ss_pred CCcccHHHHHHHcC--CceeehH---hh-HHHHHHHhcccCeeeecC-Cch-hHHHHHH---HHhh-CCC-EEEcCCCCC
Confidence 37899999999998 8898887 43 788999999999999999 553 4445544 4454 564 999999999
Q ss_pred cCCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCCC----Cc-------eec-eEEEEEEeccc
Q psy12561 82 NKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDMEH----KR-------FGY-GKCFIYLVQLT 137 (139)
Q Consensus 82 ~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~~----~~-------~~~-~~v~i~i~~p~ 137 (139)
+ +++.+.+|++|++.++ +|||||+|+.. ..+.... ++ ..| ...+|++++++
T Consensus 364 s-reg~LlrFk~l~aela----~pVVPVAI~~~~~~f~gtta~g~k~~Dp~~f~mnP~p~y~v~fL~~~ 427 (498)
T PLN02499 364 C-REPFLLRFSALFAELT----DRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQL 427 (498)
T ss_pred C-CCCcccccchhhhhhc----CceEeEEEEeccceEEEEcCCCCchhhhhhheecCCceEEEEEcCCC
Confidence 9 9999999999999887 89999999765 3322211 11 133 35889998875
No 34
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=99.61 E-value=2.3e-15 Score=121.83 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=102.0
Q ss_pred chhhhhhhhhhccc-C-CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchh--hHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 3 GFFFLSGLFHVWPV-M-RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKS--GQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 3 s~~D~~~l~~~~~~-~-~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~--~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
|++|.+++.++++. . .++++++...+ +.|.+|.+++++|++++.| +.+.. ....+++..+.+.++|.++.+|||
T Consensus 125 S~lDylllsyvL~~~~l~~~~~~ag~nl-~~~~lg~~lr~~GafFirR-sf~~~~LY~~vl~eYi~~ll~~G~~le~F~E 202 (621)
T PRK11915 125 SYLDGMLLPEVILANRLSPALTFGGANL-NFFPMGAWAKRTGAIFIRR-QTKDIPVYRFVLRAYAAQLVQNHVNLTWSIE 202 (621)
T ss_pred cccHHHHHHHHHHHcCCCCceeehhhhh-cchhHHHHHHhCCcEEecc-CCCCchHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 89999999987742 1 23444555555 5788999999999999999 65422 247888888888888999999999
Q ss_pred CeecCCCCCccccccchHHHHHh-------CCCCEEEEEEeCceeecCCC---------C---------------ceece
Q psy12561 79 GTRNKNPNKLLPFRKGAFRVAIK-------HQVPIYPLVYSPFYFIDMEH---------K---------------RFGYG 127 (139)
Q Consensus 79 Gtr~~~~~~~~~~k~G~~~la~~-------~~~pVvPv~i~g~~~~~~~~---------~---------------~~~~~ 127 (139)
|+|| ++|++.+.|-|...+..+ .+++||||+|.|-++.+... + ..+.+
T Consensus 203 G~RS-RtGkll~Pk~GlLs~vv~~~~~~~~~dV~iVPVsI~YDrV~E~~~y~~El~G~~K~~Esl~~l~~~~~~l~~~~G 281 (621)
T PRK11915 203 GGRT-RTGKLRPPVFGILRYITDAVDEIDGPEVYLVPTSIVYDQLHEVEAMTTEAYGAVKRPEDLRFLVRLARQQGERLG 281 (621)
T ss_pred CCCC-CCCCCCCCchhhHHHHHHHHhcCCCCCeEEEEEEEeecccccHHHHHHHhcCCCCCccHHHHHHHHHHHHhhcCc
Confidence 9999 999999988888775544 48999999999875444320 0 01457
Q ss_pred EEEEEEecccc
Q psy12561 128 KCFIYLVQLTI 138 (139)
Q Consensus 128 ~v~i~i~~p~~ 138 (139)
++.|+||+|+.
T Consensus 282 ~i~V~FgePis 292 (621)
T PRK11915 282 RAYLDFGEPLP 292 (621)
T ss_pred eEEEECCCCcc
Confidence 99999999985
No 35
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=99.59 E-value=3.9e-15 Score=115.30 Aligned_cols=84 Identities=25% Similarity=0.247 Sum_probs=69.6
Q ss_pred cchhhhhhhhhhccc---CCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhc--CCcEEEEE
Q psy12561 2 YGFFFLSGLFHVWPV---MRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFK--ENAKMLIF 76 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~---~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~--~g~~v~iF 76 (139)
-|.+|.+++..+.+. ..+.++++|+++.+.|++||.+..+|.|++|| +.. .+.+.+++..+.+++ .+.+++||
T Consensus 93 qS~~D~l~l~~l~~r~~~l~~~~~vlKkeL~~iPv~Gw~~~~~~~IfIdR-~~~-~d~~~l~~~~~~l~~~~~~~wllIF 170 (376)
T PLN02380 93 RSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYVFLER-SWA-KDENTLKSGFQRLKDFPRPFWLALF 170 (376)
T ss_pred ChhHHHHHHHHHhhhcccccceeEeeHHHhhhccHHHHHHHHcCCEEecC-Cch-hHHHHHHHHHHHHhhCCCccEEEEe
Confidence 378999988776542 24689999999999999999999999999999 664 557888999998886 35689999
Q ss_pred eCCeecCCCCCc
Q psy12561 77 PEGTRNKNPNKL 88 (139)
Q Consensus 77 PEGtr~~~~~~~ 88 (139)
|||||. .+++.
T Consensus 171 PEGTR~-~~~k~ 181 (376)
T PLN02380 171 VEGTRF-TQAKL 181 (376)
T ss_pred cCcCCC-Cchhh
Confidence 999999 66543
No 36
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=99.58 E-value=4e-14 Score=100.04 Aligned_cols=114 Identities=20% Similarity=0.156 Sum_probs=89.7
Q ss_pred cchhhhhhhhhhc-ccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 2 YGFFFLSGLFHVW-PVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 2 ~s~~D~~~l~~~~-~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
+|.+|.+...... + .++.++++.. +.|++++++. ..|..+|+| + .+++++.+.+++++ .++||
T Consensus 29 ~g~~e~~~~~~~~~~--~~~~~v~~~~--~~~~~~~~~~~~r~~~g~~~i~~-~------~~~~~~~~~l~~g~-~v~i~ 96 (192)
T cd07984 29 FGNWELAGLALALLG--YPVTVVYRPL--KNPLLDRLITRGRERFGARLIPR-G------GGLRELIRALKKGE-IVGIL 96 (192)
T ss_pred chHHHHHHHHHHhcC--CCeeEEEECC--CCHHHHHHHHHHHHhcCCeeEcC-C------chHHHHHHHHhCCC-EEEEE
Confidence 6889997766665 4 6788888874 5788888776 468899988 4 57778888888755 99999
Q ss_pred eCCeecCCCC--------CccccccchHHHHHhCCCCEEEEEEeCceeecCCCCceeceEEEEEEecccc
Q psy12561 77 PEGTRNKNPN--------KLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 77 PEGtr~~~~~--------~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
|||+++ .++ ...+++.|++.+|.++++||+|+++.+.. +++++|++++|+.
T Consensus 97 pD~~~~-~~~~~~~~F~G~~~~~~~G~~~lA~~~~~pivp~~~~~~~----------~~~~~i~~~~~i~ 155 (192)
T cd07984 97 PDQDPG-RKGGVFVPFFGRPAATPTGPARLALKTGAPVVPAFAYRLP----------GGGYRIEFEPPLE 155 (192)
T ss_pred eCCCCC-CCCCEEeccCCCCccchHHHHHHHHHHCCcEEEEEEEEcC----------CCCEEEEEeCCCC
Confidence 999999 543 23467999999999999999999997531 4578999999875
No 37
>KOG2847|consensus
Probab=99.57 E-value=3.2e-15 Score=108.15 Aligned_cols=113 Identities=19% Similarity=0.183 Sum_probs=94.2
Q ss_pred EchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCC
Q psy12561 24 SKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQ 103 (139)
Q Consensus 24 ~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~ 103 (139)
|..--|++|+...+++...|+|+.| +.+ -.++.|+.+.+.|..| .|+.|||||.++.-+.+..+||-|..++..++.
T Consensus 107 AhdICF~n~~~S~fFslGkclPi~R-G~G-vYQ~gmd~~i~kLn~g-~WVHiFPEGkV~q~~~~~~rfKWGigRlI~ea~ 183 (286)
T KOG2847|consen 107 AHDICFTNPFHSNFFSLGKCLPIVR-GEG-VYQKGMDFAIEKLNDG-SWVHIFPEGKVNQMEKEMLRFKWGIGRLILEAP 183 (286)
T ss_pred hhhchhccHHHHHHHhcCceEeeec-cCc-cccccHHHHHHhcCCC-CeEEECCCceeeccccchhheeccceeeeecCC
Confidence 4444578999999999999999999 764 7889999999988865 599999999999446668999999999998885
Q ss_pred CC--EEEEEEeCc-eeecCC-CCceec-eEEEEEEeccccC
Q psy12561 104 VP--IYPLVYSPF-YFIDME-HKRFGY-GKCFIYLVQLTIF 139 (139)
Q Consensus 104 ~p--VvPv~i~g~-~~~~~~-~~~~~~-~~v~i~i~~p~~~ 139 (139)
.+ |+|+...|. +++|.. ....+. .++++.||+|+.|
T Consensus 184 ~~PIVlPi~h~Gmedi~P~~~p~vp~~Gk~vtV~IG~P~~~ 224 (286)
T KOG2847|consen 184 KPPIVLPIWHTGMEDIMPEAPPYVPRFGKTVTVTIGDPINF 224 (286)
T ss_pred CCCEEeehhhhhHHHhCccCCCccCCCCCEEEEEeCCCcch
Confidence 54 889999999 899887 333344 4899999999975
No 38
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.23 E-value=2.2e-10 Score=81.10 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=95.6
Q ss_pred hcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccc
Q psy12561 13 VWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFR 92 (139)
Q Consensus 13 ~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k 92 (139)
+.|..+++. ++-+...+--+...++...|+..|.- ++.++..++++++.+.|++| .+++|-|+|.+. ......
T Consensus 63 ~~~~~~~~~-amvS~s~DGEliA~~l~kfG~~~IRG-Ss~Kgg~~Alr~l~k~Lk~G-~~i~itpDgPkG----p~~~~~ 135 (214)
T COG2121 63 AFPKGKKIY-AMVSPSRDGELIARLLEKFGLRVIRG-SSNKGGISALRALLKALKQG-KSIAITPDGPKG----PVHKIG 135 (214)
T ss_pred hccCCCcEE-EEEcCCcCHHHHHHHHHHcCceEEec-cCCcchHHHHHHHHHHHhCC-CcEEEcCCCCCC----Cceecc
Confidence 335455654 44444456778889999999999987 77788999999999999975 499999999665 444788
Q ss_pred cchHHHHHhCCCCEEEEEEeCce-----eecCCCCceeceEEEEEEecccc
Q psy12561 93 KGAFRVAIKHQVPIYPLVYSPFY-----FIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 93 ~G~~~la~~~~~pVvPv~i~g~~-----~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
.|+..+|+++|+||+||.+...+ .|++.......+++++.+|+|+.
T Consensus 136 ~Gii~LA~~sg~pi~pv~~~~sr~~~lKsWDk~~IP~PFgk~~i~~gePi~ 186 (214)
T COG2121 136 DGIIALAQKSGVPIIPVGVATSRCWRLKTWDKTIIPLPFGKIKIVLGEPIE 186 (214)
T ss_pred chhhHhhHhcCCCeEEEEEeeeeeeeecccccccccCccceeEEEecCcee
Confidence 99999999999999999997763 55555555677899999999985
No 39
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=99.13 E-value=1.6e-10 Score=94.17 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=105.5
Q ss_pred chhhhhhhhhhcc--cCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCc--hhhHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 3 GFFFLSGLFHVWP--VMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKS--KSGQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 3 s~~D~~~l~~~~~--~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~--~~~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
||+|.+++.+++- ...++++.+.-++. .|.+|.++++.|+++|.| +-+ .-....+++....|-.+|.++-=|-|
T Consensus 306 ShiDylLLsy~ly~ngLvPpHiaAGINLN-f~p~G~i~RR~GAfFIRR-sfKgn~LYs~VfrEYl~~Lf~rgysleyfIE 383 (810)
T COG2937 306 SHIDYLLLSYVLYHNGLVPPHIAAGINLN-FWPMGPIFRRGGAFFIRR-TFKGNPLYSTVFREYLGELFSRGYSLEYFIE 383 (810)
T ss_pred hhhhHHHHHHHHHhcCCCcchhhcccccc-CccchHHHHhccceEEEe-ccCCChhHHHHHHHHHHHHHhCCcceEEEee
Confidence 8999999988873 22467888888774 778899999999999999 543 23468899999999999999999999
Q ss_pred CeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCceeecCC----------C---------------Cceec
Q psy12561 79 GTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYFIDME----------H---------------KRFGY 126 (139)
Q Consensus 79 Gtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~~~~~----------~---------------~~~~~ 126 (139)
|+|| ++|++.+.|.|...+..++ .+-+|||.|-|-.+.+-. + +..+-
T Consensus 384 GGRS-RTGrlL~PKtGmlsmtlqA~Lrg~~rpI~lvPvyIgYe~v~Ev~tYa~ElrGa~K~kE~~~~l~r~i~aqk~Rn~ 462 (810)
T COG2937 384 GGRS-RTGRLLPPKTGMLSMTLQAMLRGRTRPILLVPVYIGYEHVHEVGTYAKELRGATKEKESLRWLLRVIKAQKLRNL 462 (810)
T ss_pred cCcc-ccCCcCCCccchHHHHHHHHhcCCCCCeEEEeeEeehhhHhhHHHHHHHhcCCcCCcccHHHHHHHHHHHhhhhc
Confidence 9999 9999999999999987665 466899999764332211 0 00135
Q ss_pred eEEEEEEecccc
Q psy12561 127 GKCFIYLVQLTI 138 (139)
Q Consensus 127 ~~v~i~i~~p~~ 138 (139)
+++.|.||||+-
T Consensus 463 Gq~yVnFGEPi~ 474 (810)
T COG2937 463 GQGYVNFGEPIP 474 (810)
T ss_pred CcEEEeCCCCcc
Confidence 799999999974
No 40
>KOG3729|consensus
Probab=99.10 E-value=4e-10 Score=89.39 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=102.4
Q ss_pred chhhhhhhhhhcc-cCCceEEEEchhhhccchhHHHHHhcCeEEEEccCC----chh---hHHHHHHHHHHHhcCCcEEE
Q psy12561 3 GFFFLSGLFHVWP-VMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSK----SKS---GQQTLDEAAERLFKENAKML 74 (139)
Q Consensus 3 s~~D~~~l~~~~~-~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~----~~~---~~~~~~~~~~~l~~~g~~v~ 74 (139)
||+|.+++.+.+= -....-.+|..++.++|.+||+++.+|+++|.|+-+ +++ .++.+-.....+.++++.+-
T Consensus 168 SHlDYlliTwIL~~~~Ik~P~iAsGNNLnIP~Fg~Llr~LGaFFIrRriDp~~~G~KDVLYRA~LH~yi~~~L~Q~~~iE 247 (715)
T KOG3729|consen 168 SHLDYLLITWILWHFGIKLPHIASGNNLNIPGFGWLLRALGAFFIRRRVDPDDEGGKDVLYRAILHSYIEQVLSQDMPIE 247 (715)
T ss_pred hhhhHHHHHHHHHhcCcCCceeccCCccccchHHHHHHhcchheeeeccCCCcccchhHHHHHHHHHHHHHHHhCCCceE
Confidence 8999999998872 113344677777778999999999999999999622 222 25777777777777888999
Q ss_pred EEeCCeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCceeecCC-------CC-----------------c
Q psy12561 75 IFPEGTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYFIDME-------HK-----------------R 123 (139)
Q Consensus 75 iFPEGtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~~~~~-------~~-----------------~ 123 (139)
+|-||||+ +.++....|.|......++ ++-+|||.++|.++.+.. .+ .
T Consensus 248 fFlEGtRs-R~GK~~~pk~GlLSVvV~a~~~g~IPD~LlvPVs~~YdRiveG~f~~EQ~G~pK~~ES~~~v~rGi~~~L~ 326 (715)
T KOG3729|consen 248 FFLEGTRS-RFGKALTPKNGLLSVVVEAVQHGFIPDCLLVPVSYTYDRVVEGIFLHEQMGIPKVRESVLGVFRGIFSGLS 326 (715)
T ss_pred EEEecccc-ccCCcCCcccccHHHHHHHHhcCCCCceEEEeeeccHHHHhhhhhhHHhcCCCCccHHHHHHHHHHHHHHh
Confidence 99999999 9999888999999887665 667999999875432211 10 1
Q ss_pred eeceEEEEEEecccc
Q psy12561 124 FGYGKCFIYLVQLTI 138 (139)
Q Consensus 124 ~~~~~v~i~i~~p~~ 138 (139)
...+-++|.|++|+.
T Consensus 327 kNYG~vR~DF~~P~S 341 (715)
T KOG3729|consen 327 KNYGVVRMDFGRPIS 341 (715)
T ss_pred hcCCeEEEecCCCcc
Confidence 144679999999975
No 41
>KOG1505|consensus
Probab=98.90 E-value=8.4e-10 Score=84.86 Aligned_cols=109 Identities=25% Similarity=0.309 Sum_probs=77.4
Q ss_pred chhhhhhhhhhc-ccC--CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcC--CcEEEEEe
Q psy12561 3 GFFFLSGLFHVW-PVM--RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE--NAKMLIFP 77 (139)
Q Consensus 3 s~~D~~~l~~~~-~~~--~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~--g~~v~iFP 77 (139)
+.+|.+.+..+. ..+ .+..+++|+++.+.|.+||.+...|.|+++| +- ..+.+.+.+..+.+++- ..++++||
T Consensus 81 ~~~Dwl~~w~~~~~~G~l~~~~~~lK~~lk~~Pi~Gw~~~~~~fiFl~R-~~-~~d~~~l~~~~k~l~~~~~~~wLlLFP 158 (346)
T KOG1505|consen 81 SEVDWLYLWTYAQRKGVLGNVKIVLKKSLKYLPIFGWGMWFHGFIFLER-NW-EKDEKTLISLLKHLKDSPDPYWLLLFP 158 (346)
T ss_pred cccchhhHHHHHhcCCchhhhhHHHhhHHHhCcchheeeeecceEEEec-ch-hhhHHHHHHHHHHhccCCCceEEEEec
Confidence 345666665444 222 3789999999999999999999999999999 54 46668999999988853 36999999
Q ss_pred CCeecCCC------------------CCccccccchHHHHHhCCCC----EEEEEEeCc
Q psy12561 78 EGTRNKNP------------------NKLLPFRKGAFRVAIKHQVP----IYPLVYSPF 114 (139)
Q Consensus 78 EGtr~~~~------------------~~~~~~k~G~~~la~~~~~p----VvPv~i~g~ 114 (139)
||||- .. ..+.-.+.|+++.|.+.-.+ |.=+++.|.
T Consensus 159 EGT~~-~~~~~~~S~~fa~k~GLp~l~nvLlPRt~Gf~~~l~~lr~~l~~IyD~Ti~y~ 216 (346)
T KOG1505|consen 159 EGTRF-TEKKHERSQEFAAKNGLPHLKNVLLPRTKGFKAALEELRNSLDAIYDVTIGYS 216 (346)
T ss_pred CCCcc-cHHHHHHHHHHHHHcCCCCccceeccCcchHHHHHHHhcCCCceEEEEEEecC
Confidence 99964 11 12334466777776665323 445555554
No 42
>KOG3730|consensus
Probab=98.57 E-value=1e-07 Score=75.10 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=102.9
Q ss_pred chhhhhhhhhhcc--cCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCc--hhhHHHHHHHHHHHhcCC-cEEEEEe
Q psy12561 3 GFFFLSGLFHVWP--VMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKS--KSGQQTLDEAAERLFKEN-AKMLIFP 77 (139)
Q Consensus 3 s~~D~~~l~~~~~--~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~--~~~~~~~~~~~~~l~~~g-~~v~iFP 77 (139)
|++|.+++..+.- ...-+.+.|..++....++|.++++.|++++.| +-+ +-.++.+.+.+..+..++ ..+-+|-
T Consensus 160 sY~DFlllS~icy~YDi~iP~IAAGmDF~sMk~mg~~LR~sGAFFMRR-sFg~d~LYWaVFsEYv~t~v~N~~~~VEFFi 238 (685)
T KOG3730|consen 160 SYMDFLLLSYICYYYDIEIPGIAAGMDFHSMKGMGTMLRKSGAFFMRR-SFGNDELYWAVFSEYVYTLVANYHIGVEFFI 238 (685)
T ss_pred hHHHHHHHHHHHHhccCCCchhhcccchHhhhHHHHHHHhcccceeee-ccCCceehHHHHHHHHHHHHhcCCCceEEEE
Confidence 6889888766552 123356777777778889999999999999999 654 345899999999888654 4789999
Q ss_pred CCeecCCCCCccccccchHHHHHhC-------CCCEEEEEEeCceeec------------CCC-C-----------ceec
Q psy12561 78 EGTRNKNPNKLLPFRKGAFRVAIKH-------QVPIYPLVYSPFYFID------------MEH-K-----------RFGY 126 (139)
Q Consensus 78 EGtr~~~~~~~~~~k~G~~~la~~~-------~~pVvPv~i~g~~~~~------------~~~-~-----------~~~~ 126 (139)
||||+ ++.+.+-.|-|...++.+. ++-||||.+.|.+.+. +.+ . .-+.
T Consensus 239 EgTRS-R~~K~L~PK~GlL~mvlePyf~geV~Dv~iVPVSv~YdkILEE~LyvYELLGvPKPKEST~gllKArkil~e~f 317 (685)
T KOG3730|consen 239 EGTRS-RNFKALVPKIGLLSMVLEPYFTGEVPDVMIVPVSVAYDKILEEQLYVYELLGVPKPKESTKGLLKARKILDERF 317 (685)
T ss_pred eeccc-ccccccCcchhhHHHHHhhhhcCCcCceEEEEeeecHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHhhc
Confidence 99999 8888888899999998875 5559999998854222 111 0 0156
Q ss_pred eEEEEEEecccc
Q psy12561 127 GKCFIYLVQLTI 138 (139)
Q Consensus 127 ~~v~i~i~~p~~ 138 (139)
+.+.+.+|+|+.
T Consensus 318 Gs~fl~FGePIS 329 (685)
T KOG3730|consen 318 GSMFLDFGEPIS 329 (685)
T ss_pred CcEEEecCCCcc
Confidence 889999999985
No 43
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=98.17 E-value=8.1e-05 Score=56.39 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=67.9
Q ss_pred Ccchhhhhhhhhhc-ccCCceEEEEchhhhccc----hhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEE
Q psy12561 1 MYGFFFLSGLFHVW-PVMRDVAAVSKKELLFVF----PFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLI 75 (139)
Q Consensus 1 ~~s~~D~~~l~~~~-~~~~~~~~v~~~~~~~~p----~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~i 75 (139)
++|.+|........ . .++..|++.. +.+ ++..+-...|.-.+.. ++ .+.+.++++.+.|++++ .+.+
T Consensus 116 H~GnwE~~~~~l~~~~--~~~~~vyr~~--~n~~~~~~~~~~R~~~g~~~i~~-~~--~~~~~~r~ii~~Lk~g~-~v~i 187 (298)
T PRK07920 116 HSGNWDMAGAWLVQHH--GPFTTVAERL--KPESLYERFVAYRESLGFEVLPL-TG--GERPPFEVLAERLRAGG-VVCL 187 (298)
T ss_pred CCCHHHHHHHHHHHcC--CCeEEEEecc--CCHHHHHHHHHHHHhcCCEEEec-CC--CCchHHHHHHHHHHcCC-eEEE
Confidence 36777875433222 2 4577777542 122 2223444566555643 22 23457788899998765 9999
Q ss_pred EeCCeecCCCCC-------ccccccchHHHHHhCCCCEEEEEEe
Q psy12561 76 FPEGTRNKNPNK-------LLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 76 FPEGtr~~~~~~-------~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.|+.+.. .++. ...+..|.+++|.++++||+|+.+.
T Consensus 188 l~Dq~~~-~~g~~v~FFG~~a~t~~g~a~LA~~~~apVvp~~~~ 230 (298)
T PRK07920 188 LADRDLT-RSGVEVDFFGERTRMPAGPAALALETGAALLPVHLW 230 (298)
T ss_pred EeccCcc-CCCCEEeeCCCCCCCCCCHHHHHHHHCCcEEEEEEE
Confidence 9998765 4432 3567889999999999999999986
No 44
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=98.14 E-value=7.7e-05 Score=56.44 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=74.4
Q ss_pred CcchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 1 MYGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 1 ~~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
++|.+|......... ..++.++++... +|.+..++. ..|.-.++. ...++++.+.|++++ .++++
T Consensus 121 H~GnwE~~~~~l~~~-~~~~~~v~~~~~--n~~~~~~~~~~R~~~g~~~i~~-------~~~~r~~l~~Lk~g~-~v~il 189 (298)
T PRK08419 121 HYGYWELFSLALAAY-YGAVSIVGRLLK--SAPINEMISKRREQFGIELIDK-------KGAMKELLKALKQGR-ALGIL 189 (298)
T ss_pred CccHHHHHHHHHHhc-CCCeEEEEeCCC--ChHHHHHHHHHHHHcCCeeEEC-------ccHHHHHHHHHHcCC-eEEEE
Confidence 367788865433222 136788877644 466655443 445444432 135777888888765 99999
Q ss_pred eCCeecCCCCC-------ccccccchHHHHHhCCCCEEEEEEeCceeecCCCCceeceEEEEEEecccc
Q psy12561 77 PEGTRNKNPNK-------LLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRFGYGKCFIYLVQLTI 138 (139)
Q Consensus 77 PEGtr~~~~~~-------~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~~~~~~~~v~i~i~~p~~ 138 (139)
|.......++. ...+..|.+.||.++|+||+|+++.... .+..+|++.+|+.
T Consensus 190 ~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv~~~~~~----------~~~~~i~~~~~i~ 248 (298)
T PRK08419 190 VDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPVFIFNDD----------YSHFTITFFPPIR 248 (298)
T ss_pred ecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEEEEEECC----------CCeEEEEEcCCcc
Confidence 96544312222 2367889999999999999999994311 1246667777653
No 45
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=98.12 E-value=2.7e-06 Score=64.50 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=63.7
Q ss_pred ceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhc--CCcEEEEEeCCeec----CCCCC--ccc
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFK--ENAKMLIFPEGTRN----KNPNK--LLP 90 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~--~g~~v~iFPEGtr~----~~~~~--~~~ 90 (139)
..+..+-..+++.|+++.++..+|++.++| ++- ...|.+ .|.+++|+|.|... +++.+ ...
T Consensus 98 ~~~~~tl~~~f~~P~~R~~~~~~G~~~~sr-~s~----------~~~L~~~~~G~~v~ivpGG~~E~l~~~p~~~~l~lk 166 (297)
T PF03982_consen 98 RPHLLTLSVNFRIPFFRDFLLWLGAVSASR-ESI----------RYLLSRGGSGNAVVIVPGGAAEALLAHPGRERLYLK 166 (297)
T ss_pred ceeEEEeccceeccccchhhhhcccccccc-ccc----------ceeecccCCCceeeeccCcHHHHhhcCCCceEEEEC
Confidence 355666668889999999999999999998 542 222333 24579999999654 12222 255
Q ss_pred cccchHHHHHhCCCCEEEEEEeCc
Q psy12561 91 FRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 91 ~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
=++|+.++|.++|+|+|||..-|.
T Consensus 167 ~RkGFvklAl~~Ga~LVPv~~FGE 190 (297)
T PF03982_consen 167 NRKGFVKLALQHGAPLVPVYSFGE 190 (297)
T ss_pred CcchHHHhHHHcCCcEEeEEEeCC
Confidence 688999999999999999999775
No 46
>KOG4666|consensus
Probab=98.03 E-value=3.7e-06 Score=63.68 Aligned_cols=95 Identities=5% Similarity=-0.211 Sum_probs=75.6
Q ss_pred eEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCC--cEEEEEeCCeecCCCCCccccccchHH
Q psy12561 20 VAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKEN--AKMLIFPEGTRNKNPNKLLPFRKGAFR 97 (139)
Q Consensus 20 ~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g--~~v~iFPEGtr~~~~~~~~~~k~G~~~ 97 (139)
...+++.+..++|..|..........+.| ....+...++.++...-.++| .++++||||++. .+.-|++|++.
T Consensus 30 ~s~v~~~~~~~~~~~~r~~~y~~~~l~~~-~~~ds~k~tV~~i~~~~~~~~~~~qIll~~~~~C~----~~~~Fk~~~~~ 104 (412)
T KOG4666|consen 30 LAAAIEELDKKFAPYARTDLYGTMGLGPF-PMTENIKLAVALVTLVPLRFLLSMSILLLYYLICR----VFTLFSAPYRG 104 (412)
T ss_pred HHHHHHhhcccCCchhhhhhhccceeccC-CChHHHHHHHHHHHHhhhccCCCceeeeeeccceE----EEEEecCCccC
Confidence 46788888889999999999988899998 777666677777766666665 469999999998 66689999875
Q ss_pred HHHhCCCCEEEEEEeCceeecCCCCc
Q psy12561 98 VAIKHQVPIYPLVYSPFYFIDMEHKR 123 (139)
Q Consensus 98 la~~~~~pVvPv~i~g~~~~~~~~~~ 123 (139)
.++|+.|+.+.+.+-+..-.||
T Consensus 105 ----P~~~~q~~~l~y~n~~~~~t~W 126 (412)
T KOG4666|consen 105 ----PEEEEDEGGVVFQEDYAHMEGW 126 (412)
T ss_pred ----CCCCcCcceEeccccccceecc
Confidence 8999999999887555544443
No 47
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=97.94 E-value=1.5e-05 Score=61.92 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=67.8
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEcc-----------CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRL-----------SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN 86 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~-----------~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~ 86 (139)
.++.||+...+..-|+...+.--.+-+.|--+ .+.+.+.++++++...|++||..++|||||+|.+++.
T Consensus 231 e~~iyvAGdrv~~DpL~~PFSmGrNLlCVySKKhm~d~Pelke~K~~~N~kslk~~~~lL~~Gg~~iwIaPsGgRdR~d~ 310 (426)
T PLN02349 231 ENVTYVAGDRVVTDPLCKPFSMGRNLICVHSKKHMNDDPELKEMKRKANTRTLKEMALLLREGGQLIWIAPSGGRDRPDP 310 (426)
T ss_pred hhhhhhccceEeeccccCccccCCceEEEEeccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCc
Confidence 45666666655555555444322222333221 1235678999999999999899999999999995433
Q ss_pred ---C--ccccccchH----HHHHhCCCC--EEEEEEeCceeecCC
Q psy12561 87 ---K--LLPFRKGAF----RVAIKHQVP--IYPLVYSPFYFIDME 120 (139)
Q Consensus 87 ---~--~~~~k~G~~----~la~~~~~p--VvPv~i~g~~~~~~~ 120 (139)
+ ..||-.-+. ++++++++| +.|.++.-++++|..
T Consensus 311 ~~g~~~papFD~~svd~mR~l~~~s~~ptHfYPlAl~~yDImPPP 355 (426)
T PLN02349 311 LTGEWTPAPFDPSAVDNMRRLTEKSKAPGHFYPLAMLSYDIMPPP 355 (426)
T ss_pred cCCCccCCCCChHHHHHHHHHHHhcCCCccccchHHHhCccCCCc
Confidence 2 345555433 467788888 899999866777764
No 48
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=97.53 E-value=0.0024 Score=48.14 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=64.7
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHH----HHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFV----AYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~----~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
+|.+|......... ..++..+.+.. +.|.+..+ -...|.-.++. ++ .++++.+.|++|+ .+++.+
T Consensus 130 ~GnwE~~~~~l~~~-~~~~~~i~~~~--~n~~~~~~~~~~R~~~g~~~i~~-~~------~~~~~~~~Lk~g~-~v~~l~ 198 (295)
T PF03279_consen 130 FGNWELAGRALARR-GPPVAVIYRPQ--KNPYIDRLLNKLRERFGIELIPK-GE------GIRELIRALKEGG-IVGLLG 198 (295)
T ss_pred cChHHHHHHHHHhh-CCceEEEecCC--ccHhHHHHHHHHHHhcCCeEecc-hh------hHHHHHHHhccCC-EEEEEE
Confidence 66777644322221 13566666554 34444433 34666666655 32 1778888888766 999999
Q ss_pred CCeecCCC--------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP--------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~--------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
..... .. +....+..|.+.+|.++++||+|+...
T Consensus 199 Dq~~~-~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~ 240 (295)
T PF03279_consen 199 DQDPG-KKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAY 240 (295)
T ss_pred CCCCC-CCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEE
Confidence 86544 22 233566789999999999999999985
No 49
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=97.20 E-value=0.0093 Score=45.42 Aligned_cols=100 Identities=9% Similarity=-0.095 Sum_probs=61.3
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHh----cCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYL----AGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~----~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.+|......... ..++..+.+.. +.|.+..++.. .|.-.+.. ....++++.++|++++ .+++.|
T Consensus 142 ~GnWE~~~~~l~~~-~~~~~~vyr~~--~n~~~d~~i~~~R~~~g~~~i~~------~~~~~r~l~r~Lk~g~-~v~il~ 211 (308)
T PRK06553 142 LGNWELLAIAAAAF-GLDVTVLFRPP--NNPYAARKVLEARRTTMGGLVPS------GAGAAFALAGVLERGG-HVGMLV 211 (308)
T ss_pred chHHHHHHHHHHHc-CCceEEEEecC--CChHHHHHHHHHHHHcCCCcccC------CChHHHHHHHHHHcCC-eEEEEe
Confidence 56677754332221 13566665553 46666665443 23222321 1246778888888766 888887
Q ss_pred CCeecCC------CCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKN------PNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~------~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-. . =+.....-+|.+++|.++|+||+|+.+.
T Consensus 212 DQ~~~-~gv~v~FFG~~a~t~~~~a~LA~~~~apVvp~~~~ 251 (308)
T PRK06553 212 DQKFT-RGVEVTFFGRPVKTNPLLAKLARQYDCPVHGARCI 251 (308)
T ss_pred cccCC-CCceeccCCCcCCCCchHHHHHHHHCCCEEEEEEE
Confidence 65422 1 1233456779999999999999999985
No 50
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=96.88 E-value=0.0077 Score=36.39 Aligned_cols=62 Identities=26% Similarity=0.249 Sum_probs=51.3
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.++..+...+- +--++..+++..|.-.|.- ++.+...++++++.+.+++ |.++.|-|+|.+.
T Consensus 10 ~~~~~lvS~s~-DGe~ia~~~~~~G~~~iRG-Ss~rgg~~Alr~~~~~lk~-G~~~~itpDGPrG 71 (74)
T PF04028_consen 10 RKIAALVSRSR-DGELIARVLERFGFRTIRG-SSSRGGARALREMLRALKE-GYSIAITPDGPRG 71 (74)
T ss_pred CCEEEEEccCc-CHHHHHHHHHHcCCCeEEe-CCCCcHHHHHHHHHHHHHC-CCeEEEeCCCCCC
Confidence 45655555544 5668899999999999988 8888999999999999995 5699999999776
No 51
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.026 Score=43.16 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=64.5
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
++.+|......... ...+..+.+.. ++|.+.++.. +.|.-.+++ +. ..++++.++|++|+ .+.+-|
T Consensus 132 ~gn~E~~~~~l~~~-~~~~~~~yrp~--~np~ld~~i~~~R~r~~~~~~~~-~~-----~~ir~li~~Lk~G~-~v~~lp 201 (308)
T COG1560 132 FGNWELGGRALAQQ-GPKVTAMYRPP--KNPLLDWLITRGRERFGGRLLPR-KG-----EGIRQLIKALKQGE-AVGYLP 201 (308)
T ss_pred cchHHHHHHHHHHh-CCCeeEEecCC--CCHHHHHHHHHHHHhcCCcccCC-Cc-----hhHHHHHHHHhcCC-eEEEec
Confidence 56667655544432 02333333332 4777766543 344344444 22 67788899999766 999999
Q ss_pred CCeecCCCCC-ccc-------cccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNPNK-LLP-------FRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~~~-~~~-------~k~G~~~la~~~~~pVvPv~i~ 112 (139)
+-..+ ..+. --| --+|..+||.+++++|+|+...
T Consensus 202 Dqd~~-~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vip~~~~ 243 (308)
T COG1560 202 DQDYG-PGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVFPV 243 (308)
T ss_pred CcccC-CCCCeEeccCCCcccccchHHHHHHHhCCCEEEEEEE
Confidence 98777 4433 123 3569999999999999999885
No 52
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.77 E-value=0.038 Score=41.74 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=61.1
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.+|......... ..++..|.+.. ++|.+..++. ..|.-.+.. + ...++++.+.|++++ .+++.|
T Consensus 123 ~GnwE~~~~~l~~~-~~~~~~vyr~~--~n~~~d~~~~~~R~~~g~~~i~~-~-----~~~~r~l~k~Lk~g~-~v~il~ 192 (290)
T PRK06628 123 FANWDISLKILHKF-YPKVAVIYRKA--NNPYVNKLVNESRAGDKLRLIPK-G-----PEGSRALVRAIKESE-SIVMLV 192 (290)
T ss_pred chHHHHHHHHHHHh-CCCeeEEEecC--CCHHHHHHHHHHHHhcCCceecC-C-----CchHHHHHHHHHcCC-eEEEEe
Confidence 56677654322221 12466565553 4677766543 344444422 1 134677788888765 888887
Q ss_pred CCeec-----CCCCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRN-----KNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~-----~~~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-... +==+.....-.|.+++|.++|+||+|+.+.
T Consensus 193 Dq~~~~gv~v~FFG~~a~t~~~~a~LA~~~~apvv~~~~~ 232 (290)
T PRK06628 193 DQKMNDGIEVPFLGHPAMTASAIAKIALQYKYPIIPCQII 232 (290)
T ss_pred cccCCCCeeeecCCCccccchHHHHHHHHHCCCEEEEEEE
Confidence 64422 001233456779999999999999999985
No 53
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.70 E-value=0.031 Score=42.60 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 58 TLDEAAERLFKENAKMLIFPEGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~iFPEGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.++++.++|++++ .+++-+.-.-...+ +.....-.|.+++|.++|+||+|+.+.
T Consensus 182 ~~r~ilk~Lk~g~-~v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~~ 242 (310)
T PRK05646 182 DVRGMLKLLRAGR-AIWYAPDQDYGAKQSIFVPLFGIPAATVTATTKFARLGRARVIPFTQK 242 (310)
T ss_pred hHHHHHHHHhCCC-eEEEeCCCCCCCCCCEEecCCCCcchhhhHHHHHHHhhCCcEEEEEEE
Confidence 5677888888665 88888664332111 223455779999999999999999985
No 54
>KOG2898|consensus
Probab=96.69 E-value=0.0032 Score=48.81 Aligned_cols=73 Identities=29% Similarity=0.455 Sum_probs=50.4
Q ss_pred HHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCC-cEEEEEeCCeecCCCCCccccc-cchHHHHHhCCCCEEEEEEeC
Q psy12561 36 FVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKEN-AKMLIFPEGTRNKNPNKLLPFR-KGAFRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 36 ~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g-~~v~iFPEGtr~~~~~~~~~~k-~G~~~la~~~~~pVvPv~i~g 113 (139)
.+.+....+...| ....+..-..++..+...+++ ..+++|||||+. ++.....|+ +|.+. .+..|.|++|.+
T Consensus 177 ~~~~~s~~~~f~~-~e~~d~~~~~~~~~e~~~~~~~~~ii~fpegtCi-nn~~~~~fk~k~~~e----~~~~i~pvaik~ 250 (354)
T KOG2898|consen 177 ALSRASLHFWFER-LEFTDRQVVAKRLAEHVWNERKEPILLFPEGTCI-NNTKVMQFKLKGSFE----EGVKIYPVAIKY 250 (354)
T ss_pred hhhhhchhhhhhc-chhhhhHhhhhhhhHHHhcCCCCcEEEeecceee-CCceeEEEecCCChh----hcceeeeeeeec
Confidence 4455566667777 554333333444444444433 589999999999 887788888 77764 577899999998
Q ss_pred c
Q psy12561 114 F 114 (139)
Q Consensus 114 ~ 114 (139)
.
T Consensus 251 ~ 251 (354)
T KOG2898|consen 251 D 251 (354)
T ss_pred C
Confidence 7
No 55
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=96.51 E-value=0.038 Score=41.94 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=57.1
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
+|.+|......... .+...|.+.. +.|.+..++. ..|.-.+++ ..++++.+.|++++ .+++-+
T Consensus 129 ~GnwE~~~~~~~~~--~~~~~vyr~~--~n~~~d~l~~~~R~~~g~~~i~~--------~~~r~i~~~Lk~g~-~v~il~ 195 (303)
T TIGR02207 129 FLTLELGARIFGQQ--QPGIGVYRPH--NNPLFDWIQTRGRLRSNKAMIDR--------KDLRGMIKALKNGE-RIWYAP 195 (303)
T ss_pred hhHHHHHHHHHHcc--CCCeEEEeCC--CCHHHHHHHHHHHHhcCCcccCc--------ccHHHHHHHHhCCC-eEEEeC
Confidence 55666653322221 2344444432 4666665542 233333322 12566788888766 888887
Q ss_pred CCeecCCC-------CCc-cccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP-------NKL-LPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~-------~~~-~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
...-...+ +.. ..+-.|.+.+|.++|+||+|+.+.
T Consensus 196 Dq~~~~~~g~~v~FfG~~~a~~~~g~a~LA~~~~apvip~~~~ 238 (303)
T TIGR02207 196 DHDYGRKSSVFVPFFAVPDAATTTGTSILARLSKCAVVPFTPR 238 (303)
T ss_pred CCCCCCCCcEEeCCCCCCcchhHHHHHHHHHHhCCeEEEEEEE
Confidence 54322011 223 456679999999999999999985
No 56
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.49 E-value=0.019 Score=43.48 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=60.2
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHh----cCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYL----AGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~----~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.+|............++..|.+. .++|.+..++.. .|.-.+.+ ...++++.+.|++++ .+++-+
T Consensus 118 ~GnWEl~~~~~~~~~~~~~~~vyr~--~~n~~~d~~~~~~R~~~g~~~i~~-------~~~~r~~~~~Lk~g~-~v~~l~ 187 (293)
T PRK06946 118 FVGIEAGSIWLNYSLRRRVGSLYTP--MSNPLLDAIAKAARGRFGAEMVSR-------ADSARQVLRWLRDGK-PVMLGA 187 (293)
T ss_pred hhHHHHHHHHHHhcccCCceEEeeC--CCCHHHHHHHHHHHHhcCCCccCC-------CchHHHHHHHHhCCC-eEEEeC
Confidence 5666665433211101345555554 346777665543 33333322 235777888888766 888887
Q ss_pred CCeecCCCC-------CccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNPN-------KLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~~-------~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-...++ .....-.|.+++|+++|+||+|+.+.
T Consensus 188 Dq~~~~~~gv~v~FFG~~a~t~~~~a~LA~~~~a~vvp~~~~ 229 (293)
T PRK06946 188 DMDFGLRDSTFVPFFGVPACTLTAVSRLARTGGAQVVPFITE 229 (293)
T ss_pred CCCCCCCCCeEeCCCCCCcHHhHHHHHHHHhcCCeEEEEEEE
Confidence 654321122 22344679999999999999999874
No 57
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.46 E-value=0.044 Score=41.72 Aligned_cols=100 Identities=10% Similarity=-0.065 Sum_probs=61.9
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
+|.+|......... .++..|.+. .++|.+..++. ..|.-.+.. ....++++.++|++++ .+++-+
T Consensus 122 ~GnwE~~~~~~~~~--~~~~~vyr~--~~n~~~d~~~~~~R~~~g~~~i~~------~~~~~r~li~~Lk~g~-~v~~l~ 190 (305)
T PRK08734 122 FGNWELLNQWLSER--GPIAIVYRP--PESEAVDGFLQLVRGGDNVRQVRA------EGPAVRQLFKVLKDGG-AVGILP 190 (305)
T ss_pred cchHHHHHHHHHcc--CCceEEEeC--CCCHHHHHHHHHHhccCCCeeecC------CchhHHHHHHHHhcCC-eEEEeC
Confidence 56677754332222 345666554 34677766654 333344421 1245778888888766 888886
Q ss_pred CCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-...+ +.....-.|.++||.++++||+|+.+.
T Consensus 191 Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apVvp~~~~ 232 (305)
T PRK08734 191 DQQPKMGDGVFAPFFGIPALTMTLVNRLAERTGATVLYGWCE 232 (305)
T ss_pred CCCCCCCCCeEeccCCCccchhhHHHHHHHHhCCeEEEEEEE
Confidence 65432112 223456779999999999999999884
No 58
>PRK05906 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.37 E-value=0.021 Score=45.97 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=61.3
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.||......... .++..|.+.. ++|.+..++. +.|.-.+.. ...++++.++|++++ .+++-|
T Consensus 149 ~GNWEl~~~~l~~~--~p~~~vyRp~--kNp~ld~li~~~R~r~G~~lI~~-------~~giR~liraLk~G~-~vgiL~ 216 (454)
T PRK05906 149 QANWELPFLYITKR--YPGLAFAKPI--KNRRLNKKIFSLRESFKGKIVPP-------KNGINQALRALHQGE-VVGIVG 216 (454)
T ss_pred hhHHHHHHHHHHcC--CCeEEEEecC--CCHHHHHHHHHHHHhcCCeeecC-------chHHHHHHHHHhcCC-EEEEEe
Confidence 55666643321111 3455555542 4676666543 334333422 246788889898766 999988
Q ss_pred CCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-. .+ +.....-.|.+++|+++|+||+|+.+.
T Consensus 217 DQ~~~-~~Gv~VpFFG~~a~T~tgpA~LA~rtgApVVpv~~~ 257 (454)
T PRK05906 217 DQALL-SSSYSYPLFGSQAFTTTSPALLAYKTGKPVIAVAIY 257 (454)
T ss_pred CCCCC-CCceEeCCCCCccchhhHHHHHHHHhCCeEEEEEEE
Confidence 76543 23 233455779999999999999999884
No 59
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.25 E-value=0.082 Score=40.25 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 58 TLDEAAERLFKENAKMLIFPEGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~iFPEGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.++++.++|++++ .+++-+.-.-...+ +.....-.|.+++|.++++||+|+.+.
T Consensus 183 ~~r~~~kaLk~g~-~v~il~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~~ 243 (306)
T PRK08733 183 DLRATIKHLKRGG-FLWYAPDQDMRGKDTVFVPFFGHPASTITATHQLARLTGCAVVPYFHR 243 (306)
T ss_pred cHHHHHHHHhCCC-eEEEeCCCCCCCCCcEEeCCCCCchhHHHHHHHHHHHhCCeEEEEEEE
Confidence 3677788888766 88888664432112 222445679999999999999999884
No 60
>KOG0831|consensus
Probab=96.20 E-value=0.0078 Score=45.99 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecC---CCCC---cccc
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNK---NPNK---LLPF 91 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~---~~~~---~~~~ 91 (139)
.+++.++....++.|+++.+....|.+.+.| ++ +......-. +|.+++|-..|.... .+++ .+.=
T Consensus 135 i~~~l~tl~~~F~~P~~Re~l~~~Gl~svSk-~s-------~~~~Ls~~~-~Gnav~IVvGGAqEaL~s~PG~~~L~Lk~ 205 (334)
T KOG0831|consen 135 IRPKLMTLSGQFYTPFLREYLMSLGLCSVSR-ES-------IEYLLSKKG-KGNAVVIVVGGAQEALDSHPGKNTLTLKN 205 (334)
T ss_pred CCHHHcccccceeccHHHHHHHHcCCccccH-HH-------HHHHhccCC-CCCEEEEEeCchHHHHHhCCCCceEEEec
Confidence 4567888888899999999999999998877 22 222222221 246999999996641 1222 3566
Q ss_pred ccchHHHHHhCCCCEEEEEEeCc
Q psy12561 92 RKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 92 k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
++|+.++|.++|.++||++--|-
T Consensus 206 RkGFVklAl~tGs~LVP~~sFGE 228 (334)
T KOG0831|consen 206 RKGFVKLALQTGASLVPVFSFGE 228 (334)
T ss_pred cccHHHHHHHhCCCcCceeeccc
Confidence 88999999999999999998774
No 61
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.18 E-value=0.057 Score=41.11 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=58.2
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHH----hcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY----LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~----~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
+|.+|......... .++..|.+. .++|++..++. +.|...+++ ..++++.++|++++ .+++-+
T Consensus 135 ~GnwE~~~~~~~~~--~~~~~vyr~--~~n~~~d~~~~~~R~~~g~~~i~~--------~~~r~~~k~Lk~g~-~v~il~ 201 (309)
T PRK06860 135 FLTLELGARIFGMH--NPGIGVYRP--NDNPLYDWLQTWGRLRSNKSMLDR--------KDLKGMIKALKKGE-RIWYAP 201 (309)
T ss_pred hhHHHHHHHHHHcc--CCCeEEeeC--CCCHHHHHHHHHHHhhcCCcCcCc--------ccHHHHHHHHhcCC-eEEEeC
Confidence 55666654332222 244455444 24666665543 234343422 12577788888766 888886
Q ss_pred CCeecCCC-------CCc-cccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP-------NKL-LPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~-------~~~-~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-...+ +.. ...-.|.+++|.++++||+|+.+.
T Consensus 202 Dq~~~~~~gv~v~FfG~~~a~t~~g~a~LA~~~~apvvp~~~~ 244 (309)
T PRK06860 202 DHDYGPRSSVFVPFFAVEQAATTTGTWMLARMSKAAVIPFVPR 244 (309)
T ss_pred CCCCCCCCCEEecCCCCCchhhHHHHHHHHHHhCCeEEEEEEE
Confidence 64432011 222 445779999999999999999985
No 62
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=96.14 E-value=0.028 Score=42.33 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 57 QTLDEAAERLFKENAKMLIFPEGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~~v~iFPEGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
..++++.++|+++|..+++.+.-.-...+ +.....-.|.+++|.++++||+|+.+.
T Consensus 164 ~~~r~i~k~L~k~~~~v~~l~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~~~~ 226 (289)
T PRK08706 164 EGLRALVKQFRKSSAPFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANAKVIPAIPV 226 (289)
T ss_pred hhHHHHHHHHHhCCceEEEeCCCCCCCCCCEEeccCCccchhhhHHHHHHHhcCCeEEEEEEE
Confidence 36778888885455466776554322011 233556779999999999999999985
No 63
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=95.59 E-value=0.1 Score=39.39 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=58.8
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHh----cCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYL----AGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~----~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.+|......... .++..+++.. +.|.+..++.. .|.-.+.. + ...++++.++|++++ .+.+-+
T Consensus 110 ~GnwE~~~~~~~~~--~~~~~v~r~~--~n~~~~~~~~~~R~~~g~~~i~~-~-----~~~~~~i~~aLk~g~-~v~il~ 178 (289)
T PRK08905 110 LGCFEVTARYIAQR--FPLTAMFRPP--RKAALRPLMEAGRARGNMRTAPA-T-----PQGVRMLVKALRRGE-AVGILP 178 (289)
T ss_pred cchHHHHHHHHHhc--CCceEEEECC--CCHHHHHHHHHHhcccCCceecc-C-----CccHHHHHHHHhcCC-eEEEcC
Confidence 55666653222222 3566666653 46666655432 23222321 1 144677888888765 888875
Q ss_pred CCeecCCC-------CCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-+..+ +....+-.|.+.+|.++++||+|+.+.
T Consensus 179 Dq~~~~~~g~~v~FfG~~a~~~~gpa~lA~~~~apvvp~~~~ 220 (289)
T PRK08905 179 DQVPSGGEGVWAPFFGRPAYTMTLVARLAEVTGVPVIFVAGE 220 (289)
T ss_pred CCCCCCCCceEecCCCCcchHHHHHHHHHHhhCCcEEEEEEE
Confidence 54322111 223456779999999999999999984
No 64
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=95.34 E-value=0.12 Score=39.25 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=57.3
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHh----cCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYL----AGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~----~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.+|......... .+...|.+.. ++|++..++.. .|.-.+++ ..++++.++|++++ .+++-|
T Consensus 133 ~GnwE~~~~~l~~~--~~~~~vyr~~--~n~~~d~~~~~~R~~~g~~~i~~--------~~~r~~~~aLk~g~-~v~il~ 199 (305)
T PRK08025 133 FMSLELGGRVMGLC--QPMMATYRPH--NNKLMEWVQTRGRMRSNKAMIGR--------NNLRGIVGALKKGE-AVWFAP 199 (305)
T ss_pred hhHHHHHHHHHHcc--CCCeEEEeCC--CCHHHHHHHHHHHhccCCcCcCc--------ccHHHHHHHHhCCC-eEEEeC
Confidence 56667654322221 2455555443 35777766533 23333322 22566788888765 888886
Q ss_pred CCeecCCCCC-------c-cccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNPNK-------L-LPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~~~-------~-~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-...++. . ...-.|.+++|+++++||+|+.+.
T Consensus 200 DQ~~~~~~gv~v~FfG~~~a~t~~g~~~LA~~~~apvvp~~~~ 242 (305)
T PRK08025 200 DQDYGPKGSSFAPFFAVENVATTNGTYVLSRLSGAAMLTVTMV 242 (305)
T ss_pred CCCCCCCCCeEeCCCCCcchhHHHHHHHHHHhhCCeEEEEEEE
Confidence 6432201111 1 234678999999999999999984
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.27 E-value=0.19 Score=42.21 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCC-------CCccccccchHHHHHhCCCCEEEEEE
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNP-------NKLLPFRKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~-------~~~~~~k~G~~~la~~~~~pVvPv~i 111 (139)
...++++.+.|++++ .++|-|...-. .. +....+-.|.++||.++++||||++.
T Consensus 532 ~~~~r~i~~aLk~g~-~v~il~Dq~~~-~~~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~ 592 (656)
T PRK15174 532 ADVVRACMQTLHSGQ-SLVVAIDGALN-LSAPTIDFFGQQITYSTFCSRLAWKMHLPTVFSVP 592 (656)
T ss_pred chHHHHHHHHHHcCC-eEEEEeCCCCC-CCCceeccCCCccCcCcHHHHHHHHHCCCEEEeEE
Confidence 356778889888765 88888554432 22 23356678999999999999999988
No 66
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=94.56 E-value=0.12 Score=39.49 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=52.4
Q ss_pred ceEEEEchhhhccchhHHHHHh----cCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC-------
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYL----AGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK------- 87 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~----~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~------- 87 (139)
++..|.+.. ++|.+..++.. .|.-.+.+ ...++++.++|++++ .+++-+.-.-...++.
T Consensus 156 ~~~~vyr~~--~n~~~d~~~~~~R~~~g~~~i~~-------~~~~r~i~kaLk~g~-~v~il~Dq~~~~~~gv~v~FfG~ 225 (314)
T PRK08943 156 PMAAMFHNQ--RNPLFDWLWNRVRRRFGGRLHAR-------EDGIKPFISSVRQGY-WGYYLPDEDHGPEHSVFVDFFAT 225 (314)
T ss_pred CccEEEeCC--CCHHHHHHHHHHHhhcCCeeecC-------chhHHHHHHHHhCCC-eEEEeCCCCCCCCCCEEeCCCCC
Confidence 455555553 46666655432 33333322 245677888888766 8888876554311222
Q ss_pred ccccccchHHHHHhCCCCEEEEEEe
Q psy12561 88 LLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 88 ~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
....-+|.+++|.++|+||+|+.+.
T Consensus 226 ~a~t~~g~a~LA~k~~apvvp~~~~ 250 (314)
T PRK08943 226 YKATLPGIGRLAKVCRARVVPLFPV 250 (314)
T ss_pred chhHhHHHHHHHHHhCCeEEEEEEE
Confidence 2334569999999999999999984
No 67
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=94.04 E-value=0.2 Score=38.10 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCeecCCCCCc-------cccccchHHHHHhCCCCEEEEEEe
Q psy12561 57 QTLDEAAERLFKENAKMLIFPEGTRNKNPNKL-------LPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~-------~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
..++++.++|++++ .+++-+.-.....++.. ...-+|.+.+|.++++||+|+.+.
T Consensus 180 ~~~r~i~~aLk~g~-~v~il~Dq~~~~~~gv~v~FfG~~a~t~~~~a~LA~~~~apvv~~~~~ 241 (305)
T TIGR02208 180 AGIKALLASLKRGE-SGYYLPDEDHGPEQSVFVPFFATYKATLPVVGRLAKAGNAQVVPVFPG 241 (305)
T ss_pred hhHHHHHHHHhCCC-eEEEeCCCCCCCCCCeEeccCCCcchhHHHHHHHHHhcCCeEEEEEEE
Confidence 45678888888766 88888665433112222 333558999999999999999984
No 68
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=93.38 E-value=1 Score=33.94 Aligned_cols=100 Identities=8% Similarity=-0.110 Sum_probs=55.8
Q ss_pred cchhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhc----CeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 2 YGFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLA----GVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~----g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
||.++......... .+...|.+. .++|.+..++... |.-.+. .....++++.++|++++ .++|-+
T Consensus 121 ~GnWE~~~~~~~~~--~~~~~v~r~--~~n~~~d~~~~~~R~~~g~~~i~------~~~~~~r~l~kaLk~g~-~v~il~ 189 (295)
T PRK05645 121 LGNWEVLNHFYCSQ--CKPIIFYRP--PKLKAVDELLRKQRVQLGNRVAP------STKEGILSVIKEVRKGG-QVGIPA 189 (295)
T ss_pred hhhHHHHHHHHHhc--CCCeEEEeC--CCCHHHHHHHHHHhCCCCCeEee------cCcccHHHHHHHHhcCC-eEEEcC
Confidence 55666643222222 233444433 2466666554432 323331 11245777888888766 888886
Q ss_pred CCeecCCCCCc-------cccccchHHHHHhCCCCEEEEEEe
Q psy12561 78 EGTRNKNPNKL-------LPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 78 EGtr~~~~~~~-------~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
.-.-...++.. ...-.|.+.+|.+.++||+|+.+.
T Consensus 190 Dq~~~~~~gv~v~FfG~~a~t~~~~~~la~~~~~pvv~~~~~ 231 (295)
T PRK05645 190 DPEPAESAGIFVPFLGTQALTSKFVPNMLAGGKAVGVFLHAL 231 (295)
T ss_pred CCCCCCCCCeEeCCCCCchhhhhHHHHHHHhhCCeEEEEEEE
Confidence 64432112222 233446778999999999999984
No 69
>COG3176 Putative hemolysin [General function prediction only]
Probab=91.89 E-value=0.49 Score=35.98 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=64.3
Q ss_pred hhhhhhhhhhcc-cCCceEEEEc-hhhhccchhHHHHHhcCeEEEEccCC---ch-hhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 4 FFFLSGLFHVWP-VMRDVAAVSK-KELLFVFPFGFVAYLAGVVFISRLSK---SK-SGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 4 ~~D~~~l~~~~~-~~~~~~~v~~-~~~~~~p~~g~~~~~~g~i~v~r~~~---~~-~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
..|.......+. .....++++. ..+...|++... .++|+. -. ++ ........+.+++.+ |..+++||
T Consensus 91 v~Dg~~~~d~~~~~vgtyR~l~~~~A~r~~~~ys~~-----ef~v~~-~~~~~~~k~~e~grscv~~~yr~-g~tl~lfw 163 (292)
T COG3176 91 VRDGVIVADLLKQLVGTYRLLANAQALRAGGFYSAL-----EFPVDW-LEELRPKKFNELGRSCVHREYRE-GRTLLLFW 163 (292)
T ss_pred eecccchhhhHhhhcCceEEeehHHHHHhCCCcccc-----ccceee-ecccChHHHHHHHHHHHHHHHhc-CCEEEEec
Confidence 445555544442 2356788888 455556665332 355554 22 22 233344444455554 55999999
Q ss_pred CCeecC-CCCC--ccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 78 EGTRNK-NPNK--LLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 78 EGtr~~-~~~~--~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
.|.... ..+. .++++..+..++++.+.++.|+.+++.
T Consensus 164 aG~~ay~~~g~~~~~~gcaS~~~~~~~~~a~~~p~~~~~r 203 (292)
T COG3176 164 AGLVAYLDKGRLDDMPGCASVPGLPRKHGAALAPVHHNGR 203 (292)
T ss_pred cchhHHhhccCcccCccccccccchhhcccccchhheecc
Confidence 998772 1222 467777777788999999999999965
No 70
>KOG4321|consensus
Probab=88.85 E-value=0.063 Score=37.73 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=57.4
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC-----Cccccc
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN-----KLLPFR 92 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~-----~~~~~k 92 (139)
+-+..+.+.-+++.|-+|.+... +.+.. .+...+...+.+++ .+.|-|.|-....-+ -+-+-+
T Consensus 72 rliytigdrflfklpgwgtisea---fhvsp--------gtvqscvsilrdgn-llaispggvyeaqfgdhyyellwrnr 139 (279)
T KOG4321|consen 72 RLIYTIGDRFLFKLPGWGTISEA---FHVSP--------GTVQSCVSILRDGN-LLAISPGGVYEAQFGDHYYELLWRNR 139 (279)
T ss_pred hheEeecceeEEeCCCccchhhh---hccCC--------ccHHHHHHhhccCc-EEEEcCCceeeeccchHHHHHHHhcc
Confidence 44677777778888877666443 22322 44566777676554 899999987651111 123446
Q ss_pred cchHHHHHhCCCCEEEEEEeCc
Q psy12561 93 KGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 93 ~G~~~la~~~~~pVvPv~i~g~ 114 (139)
-|+++.|.++++||+|++..+.
T Consensus 140 vgfakvaieakapiipcftqnl 161 (279)
T KOG4321|consen 140 VGFAKVAIEAKAPIIPCFTQNL 161 (279)
T ss_pred ccceeeeeecCCCccchhHHHH
Confidence 7999999999999999988653
No 71
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=87.62 E-value=0.6 Score=34.77 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
++.+.+.+..+...++|..+++|||+..+.......+...-...+|++.++.|+-
T Consensus 23 ~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~ 77 (270)
T cd07571 23 ATLDRYLDLTRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLT 77 (270)
T ss_pred HHHHHHHHHHhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEE
Confidence 3444444444444455668999999977622221223344455677888888764
No 72
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.84 E-value=2.4 Score=30.87 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCc-----------cccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKL-----------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~-----------~~~k~G~~~la~~~~~pVvP 108 (139)
..+.+.+.+..+...++|..+++|||...+...... .++..-...+|++.++.|+.
T Consensus 13 ~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 13 EENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVA 79 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEE
Confidence 455666666666666677899999998776211111 12233456678888887764
No 73
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.46 E-value=4.9 Score=29.41 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=37.2
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC--c--------cccccchHHHHHhCCCCEEEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK--L--------LPFRKGAFRVAIKHQVPIYPL 109 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~--~--------~~~k~G~~~la~~~~~pVvPv 109 (139)
+...+.+.++++.+...++|..+++|||...+..... . .+...-...+|++.++.|+.-
T Consensus 13 ~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G 81 (261)
T cd07585 13 DKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAG 81 (261)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEe
Confidence 4445566677777766667789999999776521110 0 122334566888888887743
No 74
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.03 E-value=3.3 Score=30.17 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=37.1
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC---------CccccccchHHHHHhCCCCEEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN---------KLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~---------~~~~~k~G~~~la~~~~~pVvP 108 (139)
+...+.+.+.+..+...++|..+++|||...+.... ...+...-...+|++.++.|+.
T Consensus 13 d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 79 (253)
T cd07583 13 DPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA 79 (253)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe
Confidence 334566666666776666778999999986651110 1123444566788888888774
No 75
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=80.37 E-value=3.4 Score=29.78 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC------------ccccccchHHHHHhCCCCEEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK------------LLPFRKGAFRVAIKHQVPIYPL 109 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~------------~~~~k~G~~~la~~~~~pVvPv 109 (139)
++..+.+.+..+...++|..+++|||...+..... ......-...+|++.++.|+.=
T Consensus 14 ~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G 82 (253)
T cd07197 14 EANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAG 82 (253)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEee
Confidence 34555566666666666778999999877621110 1233445666788878776643
No 76
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.20 E-value=4.2 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=34.5
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC-------------ccccccchHHHHHhCCCCEEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK-------------LLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~-------------~~~~k~G~~~la~~~~~pVvP 108 (139)
+...+.+.+.+..+...++|..+++|||...+..... ..+...-...+|++.++.|+.
T Consensus 13 d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 83 (258)
T cd07584 13 DVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVC 83 (258)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEE
Confidence 3345566666666666667779999999876521110 011223355678888776653
No 77
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=77.71 E-value=4.2 Score=29.76 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=34.9
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC-----------CccccccchHHHHHhCCCCEEEE
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN-----------KLLPFRKGAFRVAIKHQVPIYPL 109 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~-----------~~~~~k~G~~~la~~~~~pVvPv 109 (139)
...+.+.+.+..+...++|..+++|||-..+.... ...+...-...+|++.++.|+-.
T Consensus 13 ~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G 81 (265)
T cd07572 13 KEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGG 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEe
Confidence 34556666666666666677999999986651110 01122334456788888877643
No 78
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=77.62 E-value=4.6 Score=29.92 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCC-C----C---------ccccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNP-N----K---------LLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~-~----~---------~~~~k~G~~~la~~~~~pVv 107 (139)
..+.+.+.+..+...+.|.-+++|||-..+... . . ..+...-...+|++.++.|+
T Consensus 15 ~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv 83 (284)
T cd07573 15 EANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIP 83 (284)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEE
Confidence 456666667777666677799999997654110 0 0 01122345667888876654
No 79
>KOG3295|consensus
Probab=75.35 E-value=6.5 Score=27.98 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=41.6
Q ss_pred eEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccc---h--HHHHHhCCCCEEEEEEeC
Q psy12561 43 VVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKG---A--FRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 43 ~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G---~--~~la~~~~~pVvPv~i~g 113 (139)
+|.||. .....+.+.++.-++.|+.-...|+|||--... .++| + ..+|.....|++|+.-.+
T Consensus 92 GIaVD~-RRrn~s~E~lqaNvqRlKey~sklilfprk~~a--------pkkGdSsaeel~~atq~~g~~mPi~~~~ 158 (205)
T KOG3295|consen 92 GIAVDH-RRRNRSQEGLQANVQRLKEYKSKLILFPRKASA--------PKKGDSSAEELKLATQLTGPVMPIVNVY 158 (205)
T ss_pred eeeecc-cccCccHHHHHHhHHHHHHhhcceEEeecCcCC--------CcCCCCcHHHHHhhhhhcCCCcCccccc
Confidence 377887 554567888988889999876689999964443 2233 2 234555677777775544
No 80
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=74.94 E-value=5.8 Score=29.06 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC----Ccc--------ccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN----KLL--------PFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~----~~~--------~~k~G~~~la~~~~~pVv 107 (139)
..+.+.+.+..+...++|..+++|||...+.... ... +...-...+|++.++.|+
T Consensus 16 ~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii 82 (258)
T cd07578 16 ERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIV 82 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEE
Confidence 3445555555555555677899999976541110 011 112334667788787665
No 81
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=73.97 E-value=7.7 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=33.6
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCC--CC---c---------cccccchHHHHHhCCCCEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNP--NK---L---------LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~--~~---~---------~~~k~G~~~la~~~~~pVv 107 (139)
+...+.+.+.+..+...++|..+++|||-..+... .. . .++..-...+|++.++.|+
T Consensus 13 d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~ 83 (279)
T TIGR03381 13 DVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIP 83 (279)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEE
Confidence 33455666666666666677799999997544110 00 0 1223344567888887654
No 82
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=73.18 E-value=8.2 Score=27.99 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=34.8
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC----------CccccccchHHHHHhCCCCEEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN----------KLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~----------~~~~~k~G~~~la~~~~~pVvP 108 (139)
+...+.+.+.+..+...++|..+++|||-..+.... ...+...-...+|++.++.|+.
T Consensus 13 d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 80 (254)
T cd07576 13 DVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVV 80 (254)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEE
Confidence 334556666666666666777899999976651111 0112333456677787776653
No 83
>PLN02747 N-carbamolyputrescine amidase
Probab=73.03 E-value=7.2 Score=29.26 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=22.5
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.+..+...+.|..+++|||...+
T Consensus 19 d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~ 50 (296)
T PLN02747 19 DRAANVDKAERLVREAHAKGANIILIQELFEG 50 (296)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcccccCC
Confidence 34455666666666666667899999998554
No 84
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=72.65 E-value=6.5 Score=29.43 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC-------ccccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK-------LLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~-------~~~~k~G~~~la~~~~~pVvP 108 (139)
..+.+.+.+..+...++|..+++|||-..+..... ..+...-...+|++.++.|+.
T Consensus 14 ~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~ 76 (279)
T cd07579 14 AGNLATIDRLAAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVA 76 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEE
Confidence 34556666666666656779999999665411110 112334456788888887663
No 85
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=71.24 E-value=8.6 Score=28.59 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCC--CCC------------ccccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKN--PNK------------LLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~--~~~------------~~~~k~G~~~la~~~~~pVv 107 (139)
..+.+.+.++.+...++|..+++|||...+.. ... ..+...-...+|++.++.|+
T Consensus 26 ~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii 94 (287)
T cd07568 26 EAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLI 94 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEE
Confidence 34455555555655556778999999754311 000 01223335678888888766
No 86
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=67.54 E-value=7.4 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.+.+.+.+..+...+.|..+++|||...+
T Consensus 24 ~Nl~~i~~~i~~A~~~gadLIVfPE~~lt 52 (299)
T cd07567 24 KNLDIYEEIIKSAAKQGADIIVFPEDGLT 52 (299)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEccccccC
Confidence 44555555555555567799999997665
No 87
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=67.10 E-value=14 Score=27.58 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 58 TLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
.-+++++.+.++ .-++.|=+|++. .+. .+-+-.-.++.+.|.+|+||.++|.
T Consensus 133 ~~~~~i~~la~~-~GL~fFy~s~Cp-~C~---~~aPil~~fa~~yg~~v~~VS~DG~ 184 (248)
T PRK13703 133 QQRQAIAKLAEH-YGLMFFYRGQDP-IDG---QLAQVINDFRDTYGLSVIPVSVDGV 184 (248)
T ss_pred HHHHHHHHHHhc-ceEEEEECCCCc-hhH---HHHHHHHHHHHHhCCeEEEEecCCC
Confidence 344455666544 478888888887 444 5666677788999999999999985
No 88
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=65.22 E-value=15 Score=27.67 Aligned_cols=55 Identities=20% Similarity=0.142 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC-----------------CccccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN-----------------KLLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~-----------------~~~~~k~G~~~la~~~~~pVv 107 (139)
+.+.+.+.+..+...+.|-.+++|||-..+.... ...+...-...+|++.++.|+
T Consensus 21 ~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 92 (302)
T cd07569 21 ESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFY 92 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEE
Confidence 4455666666666666778999999976541100 011223345567888888766
No 89
>PF13728 TraF: F plasmid transfer operon protein
Probab=63.98 E-value=14 Score=26.73 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 58 TLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
.-+++.+.+. ++..+++|=+|++. ... .+.+-.-.++.+.|..|+||.++|.
T Consensus 110 ~~~~~l~~la-~~~gL~~F~~~~C~-~C~---~~~pil~~~~~~yg~~v~~vs~DG~ 161 (215)
T PF13728_consen 110 KRDKALKQLA-QKYGLFFFYRSDCP-YCQ---QQAPILQQFADKYGFSVIPVSLDGR 161 (215)
T ss_pred HHHHHHHHHh-hCeEEEEEEcCCCc-hhH---HHHHHHHHHHHHhCCEEEEEecCCC
Confidence 3344445555 34579999999877 443 5677777889999999999999986
No 90
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=63.11 E-value=6.4 Score=30.89 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcC--CcEEEEEeCCeecCCCCCc-cccccchHHHHHhCCCCEEE
Q psy12561 57 QTLDEAAERLFKE--NAKMLIFPEGTRNKNPNKL-LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 57 ~~~~~~~~~l~~~--g~~v~iFPEGtr~~~~~~~-~~~k~G~~~la~~~~~pVvP 108 (139)
+.+++..+...+. +..++|+||.......... .++..-...+|++.+++++-
T Consensus 182 ~~~~~~~~~~~~a~~~~dlVv~PE~a~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 236 (391)
T TIGR00546 182 AILEILTSLTKQAVEKPDLVVWPETAFPFDLENSPQKLADRLKLLVLSKGIPILI 236 (391)
T ss_pred HHHHHHHHHHhccCCCCCEEEcCccccccchhhCcHHHHHHHHHHHHhCCCEEEE
Confidence 4444444443321 4579999998665111111 11334456678888888774
No 91
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=61.40 E-value=10 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
..+.+.+.+..+...++|..+++|||-..+
T Consensus 15 ~~N~~~~~~~i~~A~~~gadlvvfPE~~l~ 44 (261)
T cd07570 15 EGNAEKILEAIREAKAQGADLVVFPELSLT 44 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEccchhcc
Confidence 455666666666666667799999997665
No 92
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=61.18 E-value=35 Score=28.32 Aligned_cols=79 Identities=14% Similarity=0.025 Sum_probs=53.2
Q ss_pred hhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCE
Q psy12561 27 ELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPI 106 (139)
Q Consensus 27 ~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pV 106 (139)
.-.+.-+...++...|.+.|++ +.-......+..+.+.|.+ |.+++| +.|-. ....+.-...+|++.++++
T Consensus 379 GSGKST~A~~l~~~~g~~~vn~-D~lg~~~~~~~~a~~~L~~-G~sVVI--DaTn~-----~~~~R~~~i~lAk~~gv~v 449 (526)
T TIGR01663 379 GAGKSHFCKKFFQPAGYKHVNA-DTLGSTQNCLTACERALDQ-GKRCAI--DNTNP-----DAASRAKFLQCARAAGIPC 449 (526)
T ss_pred CCCHHHHHHHHHHHcCCeEECc-HHHHHHHHHHHHHHHHHhC-CCcEEE--ECCCC-----CHHHHHHHHHHHHHcCCeE
Confidence 3335556667777789999988 6654445556666666664 558887 32222 2246778889999999999
Q ss_pred EEEEEeCc
Q psy12561 107 YPLVYSPF 114 (139)
Q Consensus 107 vPv~i~g~ 114 (139)
.-+.+.-.
T Consensus 450 ~~i~~~~p 457 (526)
T TIGR01663 450 RCFLFNAP 457 (526)
T ss_pred EEEEeCCC
Confidence 88877644
No 93
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.50 E-value=69 Score=23.94 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=55.1
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeC-CeecCCCCCcc-ccc-cc
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPE-GTRNKNPNKLL-PFR-KG 94 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPE-Gtr~~~~~~~~-~~k-~G 94 (139)
-++..+...+..+.+++..+.+....+-+.| .- -...+.+..+.+.+.+.|..=++.=| |+++ .+.... ..- ..
T Consensus 99 vdilqIgs~~~~n~~LL~~va~tgkPVilk~-G~-~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~-Y~~~~~n~~dl~a 175 (250)
T PRK13397 99 LDVIQVGARNMQNFEFLKTLSHIDKPILFKR-GL-MATIEEYLGALSYLQDTGKSNIILCERGVRG-YDVETRNMLDIMA 175 (250)
T ss_pred CCEEEECcccccCHHHHHHHHccCCeEEEeC-CC-CCCHHHHHHHHHHHHHcCCCeEEEEccccCC-CCCccccccCHHH
Confidence 3577888888888999988887777777766 42 36777788888888865544455567 9876 433211 222 23
Q ss_pred hHHHHHhCCCCEE
Q psy12561 95 AFRVAIKHQVPIY 107 (139)
Q Consensus 95 ~~~la~~~~~pVv 107 (139)
.-.+-...++||+
T Consensus 176 i~~lk~~~~lPVi 188 (250)
T PRK13397 176 VPIIQQKTDLPII 188 (250)
T ss_pred HHHHHHHhCCCeE
Confidence 3333344676543
No 94
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=60.38 E-value=21 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 57 QTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
+.-+++.+.+.++ ..+++|=+|++. .+. .+-+-.-.++.+.|..|+||.++|.
T Consensus 139 ~~~~~~i~~la~~-~gL~fFy~~~C~-~C~---~~apil~~fa~~ygi~v~~VS~DG~ 191 (256)
T TIGR02739 139 EQKEKAIQQLSQS-YGLFFFYRGKSP-ISQ---KMAPVIQAFAKEYGISVIPISVDGT 191 (256)
T ss_pred HHHHHHHHHHHhc-eeEEEEECCCCc-hhH---HHHHHHHHHHHHhCCeEEEEecCCC
Confidence 3344555666544 478888888877 444 4666666788999999999999987
No 95
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=59.27 E-value=10 Score=25.99 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC-----------------Cc-cccccchHHHHHhCCCCEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN-----------------KL-LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~-----------------~~-~~~k~G~~~la~~~~~pVv 107 (139)
.+.+.+.+..+...++|..+++|||.... ... .+ .+.......+|++.++.++
T Consensus 18 ~n~~~i~~~~~~a~~~~~dlvv~PE~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~ 88 (186)
T PF00795_consen 18 ENLKKILSLIEEAARQGADLVVFPEMALP-GYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIV 88 (186)
T ss_dssp HHHHHHHHHHHHHHHTTESEEEEETTTTT-CS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEcCcchhc-ccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccc
Confidence 44555556655555567789999997666 220 00 2344556678888887755
No 96
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.71 E-value=13 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
..+.+.+++..+...++|..+++|||...+
T Consensus 15 ~~n~~~~~~~i~~A~~~ga~liv~PE~~~~ 44 (269)
T cd07586 15 EENLEKHLEIIETARERGADLVVFPELSLT 44 (269)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecchhcc
Confidence 445666666666666667799999997665
No 97
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=58.50 E-value=12 Score=27.68 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=22.1
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.+..++..++|..|++|||=..+
T Consensus 16 d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~t 47 (274)
T COG0388 16 DPAENLARILRLIREAAARGADLVVFPELFLT 47 (274)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEECCccccc
Confidence 33455556666666666666789999997776
No 98
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=58.40 E-value=14 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=22.6
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.+..+...+.|..+++|||...+
T Consensus 14 d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~ 45 (297)
T cd07564 14 DLAATVEKACRLIEEAAANGAQLVVFPEAFIP 45 (297)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEecccccc
Confidence 33456666666666666667799999998654
No 99
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=55.66 E-value=14 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
..+.+.+.+..+...++|..+++|||...+
T Consensus 15 ~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~ 44 (268)
T cd07580 15 DANLARSIELIREAADAGANLVVLPELANT 44 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcCCcccc
Confidence 344555666666555566799999997665
No 100
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=55.38 E-value=14 Score=27.38 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecC-----CCCC-------------ccccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNK-----NPNK-------------LLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~-----~~~~-------------~~~~k~G~~~la~~~~~pVvP 108 (139)
..+.+.+++..+...+.|..+++|||...+. .... ..+...-...+|++.++.|+.
T Consensus 17 ~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 90 (280)
T cd07574 17 EEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIA 90 (280)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEe
Confidence 3455566666666666677999999976430 0110 012233346778888888773
No 101
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=55.15 E-value=16 Score=26.67 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=32.1
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCc--------cccccchHHHHHhCCCCEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKL--------LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~--------~~~k~G~~~la~~~~~pVv 107 (139)
+...+.+.+.+..+...+ |..+++|||-..+...... .+...-...+|++.++-|+
T Consensus 14 d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 14 DPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred CHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEE
Confidence 334556666666666666 7799999996544111010 1122235567888876443
No 102
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=54.00 E-value=95 Score=24.46 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=53.6
Q ss_pred ceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeC-CeecCCC-CCccccccchH
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPE-GTRNKNP-NKLLPFRKGAF 96 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPE-Gtr~~~~-~~~~~~k~G~~ 96 (139)
++..++.....+.|++..+.+....+-+.+ +- ....+.+..+.+.+.+.|..=++.=| |+++ .+ .....+.-.+.
T Consensus 203 d~lkI~s~~~~n~~LL~~~a~~gkPVilk~-G~-~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~-yp~~~~~~ldl~~i 279 (360)
T PRK12595 203 DVIQIGARNMQNFELLKAAGRVNKPVLLKR-GL-SATIEEFIYAAEYIMSQGNGQIILCERGIRT-YEKATRNTLDISAV 279 (360)
T ss_pred CeEEECcccccCHHHHHHHHccCCcEEEeC-CC-CCCHHHHHHHHHHHHHCCCCCEEEECCccCC-CCCCCCCCcCHHHH
Confidence 477888888888999988887777777765 32 25777788888888765533345556 8887 32 11222333333
Q ss_pred HHHHh-CCCCE
Q psy12561 97 RVAIK-HQVPI 106 (139)
Q Consensus 97 ~la~~-~~~pV 106 (139)
...++ .++||
T Consensus 280 ~~lk~~~~~PV 290 (360)
T PRK12595 280 PILKQETHLPV 290 (360)
T ss_pred HHHHHHhCCCE
Confidence 33343 66553
No 103
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=53.88 E-value=11 Score=30.66 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCeecCC-CCCccccccchHHHHHhCCCCEEE
Q psy12561 69 ENAKMLIFPEGTRNKN-PNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 69 ~g~~v~iFPEGtr~~~-~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
+|..++++||...... .....++..-...+|++.+++++-
T Consensus 256 ~~~dlvV~PE~a~p~~~~~~~~~~~~~l~~~a~~~~~~il~ 296 (505)
T PRK00302 256 GPADLIIWPETAIPFLLEDLPQAFLKALDDLAREKGSALIT 296 (505)
T ss_pred CCCCEEEeCCcccccccccccHHHHHHHHHHHHhCCCEEEE
Confidence 3557999999765311 111122333455677788888774
No 104
>PLN02798 nitrilase
Probab=53.75 E-value=16 Score=27.33 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=33.9
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCC-eecCCC-CCc--------cccccchHHHHHhCCCCEEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEG-TRNKNP-NKL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEG-tr~~~~-~~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
+...+.+.++++.+...+.|..+++|||. ...... ... .+...-...+|++.++.|+.
T Consensus 23 d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~ 90 (286)
T PLN02798 23 DLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSL 90 (286)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEE
Confidence 33455666666666666667789999996 222011 111 12233345688888888763
No 105
>PRK13287 amiF formamidase; Provisional
Probab=53.48 E-value=28 Score=26.92 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=32.2
Q ss_pred CCchhhHHHHHHHHHHHhc--CCcEEEEEeCCeecCCCCC------c-----cccccchHHHHHhCCCCEEE
Q psy12561 50 SKSKSGQQTLDEAAERLFK--ENAKMLIFPEGTRNKNPNK------L-----LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~~--~g~~v~iFPEGtr~~~~~~------~-----~~~k~G~~~la~~~~~pVvP 108 (139)
.+...+.+.+.++.+..++ .|..|++|||...+..... . .+...-...+|++.++.++.
T Consensus 30 ~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~g~~~~~l~~~a~~~~i~~~~ 101 (333)
T PRK13287 30 ADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWTTEEFLCTVDGPEVDAFAQACKENKVWGVF 101 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccchhhhcccCCCHHHHHHHHHHHHcCeEEEE
Confidence 3334455555555555443 2678999999866511110 0 12222356677777776664
No 106
>PLN02504 nitrilase
Probab=53.33 E-value=20 Score=27.89 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
..+.+.+.+..++..+.|..+++|||...+
T Consensus 40 ~~nl~~~~~li~eAa~~gadLIVfPE~~lt 69 (346)
T PLN02504 40 PATLDKAERLIAEAAAYGSQLVVFPEAFIG 69 (346)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCccccc
Confidence 345555566666666667799999997554
No 107
>PRK06852 aldolase; Validated
Probab=51.83 E-value=26 Score=26.94 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCcEEE--EEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 57 QTLDEAAERLFKENAKML--IFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~~v~--iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
+.+.++.++-.+-|.+++ +||-|... .++.-..+-..++++|.+.|+.||=+...
T Consensus 154 ~~l~~v~~ea~~~GlPll~~~yprG~~i-~~~~~~~~ia~aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 154 SEAAQIIYEAHKHGLIAVLWIYPRGKAV-KDEKDPHLIAGAAGVAACLGADFVKVNYP 210 (304)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeccCccc-CCCccHHHHHHHHHHHHHHcCCEEEecCC
Confidence 344444455555677766 69999776 44433356778888888888888766553
No 108
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=51.46 E-value=11 Score=23.45 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=11.5
Q ss_pred CcEEEEEeCCeec
Q psy12561 70 NAKMLIFPEGTRN 82 (139)
Q Consensus 70 g~~v~iFPEGtr~ 82 (139)
+.+++.||||...
T Consensus 21 ~~~vlL~PEgmi~ 33 (88)
T PRK02079 21 NCHVLLYPEGMIK 33 (88)
T ss_pred CceEEEcCCeeee
Confidence 4599999999887
No 109
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.81 E-value=76 Score=23.85 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=47.8
Q ss_pred ccchhHHHHHhcCeEEEE--c-cCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCE
Q psy12561 30 FVFPFGFVAYLAGVVFIS--R-LSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPI 106 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~--r-~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pV 106 (139)
..+-++++++..|.-.+. . .....-..+.+.++.+.+++.+ .=+||.|-..+ .+.+-.+++++|++|
T Consensus 185 ~H~af~Yl~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~If~e~~~~---------~~~~~~ia~~~g~~v 254 (286)
T cd01019 185 FHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKG-ATCVFAEPQFH---------PKIAETLAEGTGAKV 254 (286)
T ss_pred ecccHHHHHHHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcC-CcEEEecCCCC---------hHHHHHHHHhcCceE
Confidence 456678888888764332 1 0122345788888888888777 55667764433 246677889999988
Q ss_pred EEEEEe
Q psy12561 107 YPLVYS 112 (139)
Q Consensus 107 vPv~i~ 112 (139)
+++-..
T Consensus 255 ~~l~~l 260 (286)
T cd01019 255 GELDPL 260 (286)
T ss_pred EEeccc
Confidence 766443
No 110
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.58 E-value=1e+02 Score=22.81 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=45.0
Q ss_pred ccchhHHHHHhcCeEEEEcc-CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 30 FVFPFGFVAYLAGVVFISRL-SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~r~-~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
..+-++++++..|.-.+.-. ....-..+.+.++.+.+++.+ .=+||.|=..+ + +-+-.+|+++|+++++
T Consensus 176 ~H~af~Y~~~~ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~if~e~~~~--~-------~~~~~la~~~g~~v~~ 245 (266)
T cd01018 176 YHPAWGYFARDYGLTQIPIEEEGKEPSPADLKRLIDLAKEKG-VRVVFVQPQFS--T-------KSAEAIAREIGAKVVT 245 (266)
T ss_pred ECchhHHHHHHcCCEEEecCCCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC--c-------HHHHHHHHHcCCeEEE
Confidence 45566888888886544320 222345778888888888777 44666663222 1 2233788999999987
Q ss_pred EE
Q psy12561 109 LV 110 (139)
Q Consensus 109 v~ 110 (139)
+-
T Consensus 246 ld 247 (266)
T cd01018 246 ID 247 (266)
T ss_pred eC
Confidence 64
No 111
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=48.85 E-value=23 Score=26.83 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHhc----CCcEEEEEeCCeecCCCC----Cc---------cccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFK----ENAKMLIFPEGTRNKNPN----KL---------LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~----~g~~v~iFPEGtr~~~~~----~~---------~~~k~G~~~la~~~~~pVv 107 (139)
..+.+.+.+.++...+ +|..+++|||-..+.... .. .+...-...+|++.++.|+
T Consensus 15 ~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv 86 (295)
T cd07566 15 EENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVV 86 (295)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEE
Confidence 4455556665555554 567899999965541110 00 1112233467888887765
No 112
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=48.27 E-value=24 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.++..+++++.+.....+..++.||.|+..
T Consensus 15 tDdt~Aiq~Ai~~~~~~~g~~v~~P~G~Y~ 44 (225)
T PF12708_consen 15 TDDTAAIQAAIDAAAAAGGGVVYFPPGTYR 44 (225)
T ss_dssp EE-HHHHHHHHHHHCSTTSEEEEE-SEEEE
T ss_pred hhHHHHHHHhhhhcccCCCeEEEEcCcEEE
Confidence 356788888884445444599999999876
No 113
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=46.98 E-value=21 Score=26.76 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=33.0
Q ss_pred CCchhhHHHHHHHHHHHhc-----CCcEEEEEeCCeecCCCC-Cc--------------cccccchHHHHHhCCCCEEE
Q psy12561 50 SKSKSGQQTLDEAAERLFK-----ENAKMLIFPEGTRNKNPN-KL--------------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~~-----~g~~v~iFPEGtr~~~~~-~~--------------~~~k~G~~~la~~~~~pVvP 108 (139)
.+...+.+.+.++.+...+ +|..+++|||-..+.... .. .+...-...+|++.++-|+-
T Consensus 17 ~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 95 (294)
T cd07582 17 ADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAA 95 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEE
Confidence 3334555555555555443 256899999976652110 00 11224455678888887764
No 114
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=46.61 E-value=28 Score=26.23 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=32.6
Q ss_pred CchhhHHHHHHHHHHHhc--CCcEEEEEeCCeecCCC---CCc--------cccccchHHHHHhCCCCEEE
Q psy12561 51 KSKSGQQTLDEAAERLFK--ENAKMLIFPEGTRNKNP---NKL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~--~g~~v~iFPEGtr~~~~---~~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
+...+.+.+.++.+...+ .|..+++|||...+... ... .+...-...+|++.++-++.
T Consensus 18 d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA~~~~i~i~~ 88 (291)
T cd07565 18 EVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWTMDETACTVPGPETDIFAEACKEAKVWGVF 88 (291)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCcchhhhhccCCCChhHHHHHHHHHHCCeEEEE
Confidence 334555566555555553 36799999998665211 111 12222344677888877664
No 115
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=45.57 E-value=76 Score=23.14 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=40.6
Q ss_pred ccchhHHHHHhcCeEEEEcc---CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCE
Q psy12561 30 FVFPFGFVAYLAGVVFISRL---SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPI 106 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~r~---~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pV 106 (139)
..+.++++++..|.-.+... ....-..+.+.++.+.+++++-.+++...+.. .+-+-.+|+++|++|
T Consensus 156 ~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~----------~~~~~~la~~~g~~v 225 (256)
T PF01297_consen 156 YHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFS----------SKLAEALAKETGVKV 225 (256)
T ss_dssp EESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-----------THHHHHHHHCCT-EE
T ss_pred EChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCC----------hHHHHHHHHHcCCcE
Confidence 45666788888886544331 12234578888888888887744455433211 234556789999998
Q ss_pred EEE
Q psy12561 107 YPL 109 (139)
Q Consensus 107 vPv 109 (139)
+++
T Consensus 226 v~l 228 (256)
T PF01297_consen 226 VYL 228 (256)
T ss_dssp EES
T ss_pred EEe
Confidence 544
No 116
>COG3371 Predicted membrane protein [Function unknown]
Probab=45.48 E-value=8.6 Score=27.23 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=9.3
Q ss_pred EEEEEeCCeec
Q psy12561 72 KMLIFPEGTRN 82 (139)
Q Consensus 72 ~v~iFPEGtr~ 82 (139)
-+.||||||.-
T Consensus 91 LVGVFpEgt~p 101 (181)
T COG3371 91 LVGVFPEGTPP 101 (181)
T ss_pred heeeCCCCCCc
Confidence 58999999965
No 117
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=44.60 E-value=1.2e+02 Score=22.64 Aligned_cols=72 Identities=22% Similarity=0.182 Sum_probs=45.7
Q ss_pred ccchhHHHHHhcCeEEEEcc---CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCE
Q psy12561 30 FVFPFGFVAYLAGVVFISRL---SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPI 106 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~r~---~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pV 106 (139)
..|-++++++..|.-.+.-. ....-..+.+.++.+.+++++ .-+||.|=..+ .+-+-.+|+++|++|
T Consensus 177 ~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~if~e~~~~---------~~~~~~la~~~g~~v 246 (282)
T cd01017 177 QHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSD-VKYIFFEENAS---------SKIAETLAKETGAKL 246 (282)
T ss_pred ecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCCC---------hHHHHHHHHHcCCcE
Confidence 45666788888886544210 122345778888888888877 55666663333 123345889999999
Q ss_pred EEEEE
Q psy12561 107 YPLVY 111 (139)
Q Consensus 107 vPv~i 111 (139)
+.+..
T Consensus 247 ~~ld~ 251 (282)
T cd01017 247 LVLNP 251 (282)
T ss_pred EEecc
Confidence 76543
No 118
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=44.33 E-value=26 Score=27.48 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCeecCC---CCC---c----cccccc-----hHHHHHhCCCCEE
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGTRNKN---PNK---L----LPFRKG-----AFRVAIKHQVPIY 107 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~---~~~---~----~~~k~G-----~~~la~~~~~pVv 107 (139)
...+.+.+.+..+...++|..|++|||-..+.. ... . .....| ...+|++.++-|+
T Consensus 85 ~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv 155 (363)
T cd07587 85 REAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIV 155 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEE
Confidence 345556666666666666779999999544310 110 0 011123 5678888888776
No 119
>COG3411 Ferredoxin [Energy production and conversion]
Probab=41.89 E-value=47 Score=19.39 Aligned_cols=14 Identities=21% Similarity=0.786 Sum_probs=10.1
Q ss_pred hcCCcEEEEEeCCe
Q psy12561 67 FKENAKMLIFPEGT 80 (139)
Q Consensus 67 ~~~g~~v~iFPEGt 80 (139)
.+.|-.+++||||.
T Consensus 14 C~~gPvl~vYpegv 27 (64)
T COG3411 14 CQDGPVLVVYPEGV 27 (64)
T ss_pred hccCCEEEEecCCe
Confidence 34566888999983
No 120
>KOG0805|consensus
Probab=41.39 E-value=50 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.+..++..++...+|..+++|||....
T Consensus 36 L~K~~~~~~Eaa~~Ga~LV~fPEAfiG 62 (337)
T KOG0805|consen 36 LDKAEKYIVEAASKGAELVLFPEAFIG 62 (337)
T ss_pred HHHHHHHHHHHhcCCceEEEeehHhcc
Confidence 333344444455567799999997654
No 121
>PLN00202 beta-ureidopropionase
Probab=40.25 E-value=51 Score=26.32 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCC-----CCc--------cccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNP-----NKL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~-----~~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
....+.+.+..+...+.|..+++|||...+... ... .+...-...+|++.++.|+-
T Consensus 109 ~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~ 177 (405)
T PLN00202 109 RAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVS 177 (405)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEE
Confidence 345555555556555567799999997433110 001 12223345677888988773
No 122
>KOG0806|consensus
Probab=37.61 E-value=52 Score=25.27 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
..+...++..++...+.|..+++|||.-.+
T Consensus 29 ~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~ 58 (298)
T KOG0806|consen 29 NENIDILEKAVKEAAKQGAKIIVFPEDGLY 58 (298)
T ss_pred hhhHHHHHHHHHHHHhcCCeEEEChhhccc
Confidence 345666777777777777899999998776
No 123
>PRK13981 NAD synthetase; Provisional
Probab=37.38 E-value=32 Score=28.33 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=23.2
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.+..+...++|..+++|||...+
T Consensus 14 d~~~N~~~i~~~i~~A~~~gadLIVfPEl~lt 45 (540)
T PRK13981 14 DIAGNAAKILAAAAEAADAGADLLLFPELFLS 45 (540)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECcchhhc
Confidence 34456666666666666677799999998766
No 124
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=36.96 E-value=56 Score=25.70 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCcEEE--EEeCCeecCCCCC----ccccccchHHHHHhCCCCEEEEEEeC
Q psy12561 56 QQTLDEAAERLFKENAKML--IFPEGTRNKNPNK----LLPFRKGAFRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~--iFPEGtr~~~~~~----~~~~k~G~~~la~~~~~pVvPv~i~g 113 (139)
.+.+.++.++-.+-|.+++ +||-|... .++. -..+-..++++|.+.|+.||=+..-+
T Consensus 178 l~~l~~i~~ea~~~GlPlv~~~YpRG~~i-~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~ 240 (348)
T PRK09250 178 IEEISEAFEEAHELGLATVLWSYLRNSAF-KKDGDYHTAADLTGQANHLAATIGADIIKQKLPT 240 (348)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccCccc-CCcccccccHHHHHHHHHHHHHHcCCEEEecCCC
Confidence 3444445555555677766 59999776 3332 13477789999999999999776654
No 125
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.71 E-value=67 Score=23.35 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC----Cc---------cccccchHHHHHhCCCCEEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN----KL---------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~----~~---------~~~k~G~~~la~~~~~pVvP 108 (139)
.+.+.+.+..+.. +..+++|||...+.... .. .+...-...+|++.++.|+.
T Consensus 16 ~N~~~~~~~i~~a---~adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~ 80 (259)
T cd07577 16 KNLKKVESLIKGV---EADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAYIVA 80 (259)
T ss_pred HHHHHHHHHHHHh---CCCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcEEEe
Confidence 3444444444333 25799999976551110 01 11223456677788887663
No 126
>PHA00687 hypothetical protein
Probab=35.37 E-value=47 Score=17.98 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcC
Q psy12561 36 FVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE 69 (139)
Q Consensus 36 ~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~ 69 (139)
.++....-.||.| .++-...++++++.++++++
T Consensus 17 rllqqaaqtpitr-adplarvkaiekatervkrq 49 (56)
T PHA00687 17 RLLQQAAQTPITR-ADPLARVKAIEKATERVKRQ 49 (56)
T ss_pred HHHHHHhcCCccc-cChHHHHHHHHHHHHHHHHh
Confidence 4556666789999 88888899999999988864
No 127
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.30 E-value=2.1e+02 Score=22.21 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
-+..=++..++.+.|++..+.+....+.+.+ +- ...+.++.+.+.+.+.|..=++.=+++++
T Consensus 111 v~~~KI~S~~~~n~~LL~~va~~gkPvilst-G~--~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~ 172 (327)
T TIGR03586 111 VPAYKIASFEITDLPLIRYVAKTGKPIIMST-GI--ATLEEIQEAVEACREAGCKDLVLLKCTSS 172 (327)
T ss_pred CCEEEECCccccCHHHHHHHHhcCCcEEEEC-CC--CCHHHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 4577788889999999999988888888876 44 67888888888888655422344445554
No 128
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=34.90 E-value=1.3e+02 Score=22.00 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEE
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVv 107 (139)
.+.+.+..++++++...+++++=.... ......+...-.++-+.++|+.+|
T Consensus 170 ~~~i~~~i~~~r~~~D~vIv~~HwG~e-~~~~p~~~q~~~a~~lidaGaDiI 220 (250)
T PF09587_consen 170 IERIKEDIREARKKADVVIVSLHWGIE-YENYPTPEQRELARALIDAGADII 220 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCCC-CCCCCCHHHHHHHHHHHHcCCCEE
Confidence 466777777787656688888877666 566667788888888888998876
No 129
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=34.45 E-value=2e+02 Score=21.50 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=42.4
Q ss_pred ceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc-EEEEEeCCeec
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA-KMLIFPEGTRN 82 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~-~v~iFPEGtr~ 82 (139)
++..++..+..+.+++..+.+....+-+.+ +- ..+.+.+..+.+.+.+.|. .+++--=|+.+
T Consensus 110 d~lkI~s~~~~n~~LL~~~a~~gkPVilk~-G~-~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~ 172 (260)
T TIGR01361 110 DILQIGARNMQNFELLKEVGKQGKPVLLKR-GM-GNTIEEWLYAAEYILSSGNGNVILCERGIRT 172 (260)
T ss_pred CEEEECcccccCHHHHHHHhcCCCcEEEeC-CC-CCCHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 577888888888888888877666666655 32 2368888888888876443 45553336655
No 130
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=34.35 E-value=49 Score=27.01 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCce
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFY 115 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~ 115 (139)
.+-+++++.++.+.-.+=+||==||+. ..-.-..+..-+-++..+.++||||+.-.|.+
T Consensus 82 ~~~L~~~i~ei~~~~~p~~ifv~~TC~-t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 82 YEELKRLCLQIKKDRNPSVIVWIGTCT-TEIIKMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccCc-HHhhccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 445555555555433366777778887 33222233333334555779999999988764
No 131
>PRK02628 nadE NAD synthetase; Reviewed
Probab=34.29 E-value=49 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=22.0
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.++.+...++|..+++|||=..+
T Consensus 26 D~~~Nl~~i~~~i~~A~~~gadLvVfPEL~lt 57 (679)
T PRK02628 26 DPAFNAARILALARRAADDGVALAVFPELSLS 57 (679)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEccccccc
Confidence 43456666666666665667799999996555
No 132
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=33.58 E-value=33 Score=24.92 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=23.7
Q ss_pred eEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeC
Q psy12561 43 VVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPE 78 (139)
Q Consensus 43 ~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPE 78 (139)
+|.||. .......+.+..=+++|++--..|++||-
T Consensus 92 GI~VD~-RR~n~s~Esl~~Nv~rLk~y~skLvlFPr 126 (212)
T PTZ00352 92 GIAVDH-RRRNRSQESLNLNVKRLKAYLSKLVLFPR 126 (212)
T ss_pred ceeecc-ccccCcHHHHHHHHHHHHHHHHheeeecC
Confidence 378886 44445566777766777754447999994
No 133
>PF13362 Toprim_3: Toprim domain
Probab=33.56 E-value=1.1e+02 Score=18.51 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=23.3
Q ss_pred eEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEe
Q psy12561 43 VVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77 (139)
Q Consensus 43 ~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFP 77 (139)
.|..|+ +......+...++.+.+.+.|..+.+.+
T Consensus 45 ii~~D~-D~~~~G~~~a~~~~~~~~~~g~~~~~~~ 78 (96)
T PF13362_consen 45 IIAADN-DKANEGQKAAEKAAERLEAAGIAVSIVE 78 (96)
T ss_pred EEEECC-CCchhhHHHHHHHHHHHHhCCCeEEEEC
Confidence 466666 5544478888888888887676655553
No 134
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=33.04 E-value=48 Score=28.54 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=23.0
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.++.+...+.|..+++|||-..+
T Consensus 17 D~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lT 48 (700)
T PLN02339 17 DFDGNLKRIKESIAEAKAAGAVYRVGPELEIT 48 (700)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCCccC
Confidence 34456666666666666667799999997776
No 135
>PTZ00192 60S ribosomal protein L13; Provisional
Probab=33.01 E-value=34 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=25.2
Q ss_pred eEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCC
Q psy12561 43 VVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEG 79 (139)
Q Consensus 43 ~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEG 79 (139)
+|.||. .......+.+..=++.|++--..|++||-.
T Consensus 99 GI~VD~-RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk 134 (218)
T PTZ00192 99 GIRVDR-RRKNKSEEGMNVNVQRLKTYMSKLVLFPMN 134 (218)
T ss_pred ceeecc-ccccccHHHHHHHHHHHHHHHHheeeeccc
Confidence 378886 444456777777777777644579999954
No 136
>COG4668 MtlA Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
Probab=31.56 E-value=38 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCcEEEEEeCCeecCCCCCcc
Q psy12561 60 DEAAERLFKENAKMLIFPEGTRNKNPNKLL 89 (139)
Q Consensus 60 ~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~ 89 (139)
.+....+++.|..++.||||-.+ .++..-
T Consensus 64 ~e~k~~V~kTgv~i~q~p~GV~w-g~g~~a 92 (142)
T COG4668 64 GEAKDLVLKTGVVIVQFPEGVDW-GDGQIA 92 (142)
T ss_pred hHHHHHHHHcCeEEEECCCcccc-CCCceE
Confidence 34445566678899999999888 555333
No 137
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=30.89 E-value=99 Score=24.55 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=31.1
Q ss_pred cEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEE
Q psy12561 71 AKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 71 ~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i 111 (139)
.-++|+=||..- ......+---|++++|++.++||+-++=
T Consensus 285 aDLVITGEGr~D-~Qs~~GK~pigVA~~Akk~~vPvIaiaG 324 (378)
T COG1929 285 ADLVITGEGRID-SQSLHGKTPIGVAKLAKKYGVPVIAIAG 324 (378)
T ss_pred CCEEEeCCCccc-ccccCCccchHHHHhhhhhCCCEEEEec
Confidence 479999999776 4433445566999999999999987754
No 138
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=30.75 E-value=1.3e+02 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=41.8
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA 71 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~ 71 (139)
-++.=++..++.++|++..+.+....+-+.+ +- ...+-++.+.+.+.+.|.
T Consensus 110 v~~~KIaS~~~~n~pLL~~~A~~gkPvilSt-Gm--atl~Ei~~Av~~i~~~G~ 160 (329)
T TIGR03569 110 VPRFKIPSGEITNAPLLKKIARFGKPVILST-GM--ATLEEIEAAVGVLRDAGT 160 (329)
T ss_pred CCEEEECcccccCHHHHHHHHhcCCcEEEEC-CC--CCHHHHHHHHHHHHHcCC
Confidence 4578889999999999999998888888876 44 688888888898886553
No 139
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.75 E-value=96 Score=23.19 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=37.0
Q ss_pred ccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 30 FVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
++|..--+..++|+-+. .+..+|+...++|++.| +.+.=.||.. ++ =+.++|++.++|++-
T Consensus 118 ~v~~~~GlnNhmGs~~t-------sn~~aM~~~m~~Lk~r~--l~flDs~T~a-~S--------~a~~iAk~~gVp~~~ 178 (250)
T COG2861 118 KVPDAVGLNNHMGSRFT-------SNEDAMEKLMEALKERG--LYFLDSGTIA-NS--------LAGKIAKEIGVPVIK 178 (250)
T ss_pred hCccceeehhhhhhhhc-------CcHHHHHHHHHHHHHCC--eEEEcccccc-cc--------hhhhhHhhcCCceee
Confidence 34444444455554433 44678888888888766 5555556655 32 245577788888763
No 140
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.57 E-value=1.8e+02 Score=21.89 Aligned_cols=69 Identities=19% Similarity=0.102 Sum_probs=43.7
Q ss_pred ccchhHHHHHhcCeEEEEcc---CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCE
Q psy12561 30 FVFPFGFVAYLAGVVFISRL---SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPI 106 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v~r~---~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pV 106 (139)
.+|-++++++..|.-.+.-. ....-..+.+.++.+.+++.+ .=+||.|-..+ .+-+-.+|+++|+++
T Consensus 183 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~if~e~~~~---------~~~~~~ia~~~gv~v 252 (287)
T cd01137 183 SEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEK-VPAVFVESTVN---------DRLMKQVAKETGAKI 252 (287)
T ss_pred ecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhC-CCEEEEeCCCC---------hHHHHHHHHHhCCcc
Confidence 45667888888886544310 122345778888888888777 44666663333 133567899999997
Q ss_pred EE
Q psy12561 107 YP 108 (139)
Q Consensus 107 vP 108 (139)
+.
T Consensus 253 ~~ 254 (287)
T cd01137 253 GG 254 (287)
T ss_pred cc
Confidence 43
No 141
>PRK08227 autoinducer 2 aldolase; Validated
Probab=29.41 E-value=87 Score=23.59 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCcEEE-EEeCCeecCCCCCccccccchHHHHHhCCCCEE
Q psy12561 58 TLDEAAERLFKENAKML-IFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~-iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVv 107 (139)
.+.++.++-.+-|.+++ ++|.|... .++ . .+-..++++|.+.|+.||
T Consensus 128 ~l~~v~~ea~~~G~Plla~~prG~~~-~~~-~-~~ia~aaRiaaELGADiV 175 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMAVTAVGKDM-VRD-A-RYFSLATRIAAEMGAQII 175 (264)
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCc-Cch-H-HHHHHHHHHHHHHcCCEE
Confidence 33344444445566654 58888664 221 1 155667777777766655
No 142
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=28.94 E-value=1.4e+02 Score=18.27 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEE
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPL 109 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv 109 (139)
..-+++..+++.++...+++.++..-. ..-.-.-.++.+.++|++-|
T Consensus 15 vvG~kqt~Kai~kg~~~~v~iA~Da~~-------~vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 15 VVGLKETLKALKKDQVTSLIIAEDVEV-------YLMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred eeeHHHHHHHHhcCCceEEEEeCCCCH-------HHHHHHHHHHHHcCCCEEEE
Confidence 445677788888777677777763221 23346677889999998855
No 143
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=27.62 E-value=2.3e+02 Score=20.60 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEE----eCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIF----PEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iF----PEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
...+.++++.+.+.+|....++| |...+..++.+..|--.-++.-|.+.|+-|.+..+...
T Consensus 141 RG~kHL~eL~~l~~~G~ra~vlFvvqr~d~~~f~p~~~~Dp~fa~~l~~A~~~GV~v~a~~~~~~ 205 (215)
T PF03749_consen 141 RGRKHLRELAELAEEGYRAAVLFVVQRPDAERFRPNREIDPEFAEALREAAEAGVEVLAYRCSVD 205 (215)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEEECCCCCEEeEChhcCHHHHHHHHHHHHCCCEEEEEEEEEc
Confidence 46778888888777665555555 33344424555666677788889999999999988643
No 144
>PF10405 BHD_3: Rad4 beta-hairpin domain 3; InterPro: IPR018328 Mutations in the nucleotide excision repair (NER) pathway can cause the xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they are chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals and ultraviolet radiation. The xeroderma pigmentosum C (XPC) protein has a central role in initiating global-genome NER by recognising the lesion and recruiting downstream factors. In NER in eukaryotes, DNA is incised on both sides of the lesion, resulting in the removal of a fragment ~25-30 nucleotides long. This is followed by repair synthesis and ligation. This reaction, in yeast, requires the damage binding factors Rad14, RPA, and the Rad4-Rad23 complex, the transcription factor TFIIH which contains the two DNA helicases Rad3 and Rad25, essential for creating a bubble structure, and the two endonucleases, the Rad1-Rad10 complex and Rad2, which incise the damaged DNA strand on the 5'- and 3'-side of the lesion, respectively []. The crystal structure of the yeast XPC orthologue Rad4 bound to DNA containing a cyclobutane pyrimidine dimer lesion has been determined. The structure shows that Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. The expelled nucleotides of the undamaged strand are recognised by Rad4, whereas the two cyclobutane pyrimidine dimer-linked nucleotides become disordered. This indicates that the lesions recognised by Rad4/XPC thermodynamically destabilise the double helix in a manner that facilitates the flipping-out of two base pairs []. Homologues of all the above mentioned yeast genes, except for RAD7, RAD16, and MMS19, have been identified in humans, and mutations in these human genes affect NER in a similar fashion as they do in yeast, with the exception of XPC, the human counterpart of yeast RAD4. Deletion of RAD4 causes the same high level of UV sensitivity as do mutations in the other class 1 genes, and rad4 mutants are completely defective in incision. By contrast, XPC is required for the repair of nontranscribed regions of the genome but not for the repair of the transcribed DNA strand. This entry represents the DNA-binding domain of Rad4, which has a beta-hairpin structure []. Rad4 inserts a beta-hairpin through the DNA duplex, causing the two damaged base pairs to flip out of the double helix. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A.
Probab=27.08 E-value=73 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=15.2
Q ss_pred ccchHHHHHhCCCCEEEEEEe
Q psy12561 92 RKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 92 k~G~~~la~~~~~pVvPv~i~ 112 (139)
.+++.++|++.++...|+.+-
T Consensus 26 ~~~~~~~a~~l~Idya~AV~G 46 (76)
T PF10405_consen 26 LPGIEKVAKKLGIDYAPAVVG 46 (76)
T ss_dssp -TTHHHHHHHTT---EEEEEE
T ss_pred cccHHHHHHHcCCcEEeeecc
Confidence 678999999999999998874
No 145
>KOG0807|consensus
Probab=26.87 E-value=77 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCC
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEG 79 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEG 79 (139)
..+.++.++++++....|..+++|||-
T Consensus 30 ~kNl~~~keLi~eA~~k~A~~iflPE~ 56 (295)
T KOG0807|consen 30 TKNLATCKELISEAAQKGAKLIFLPEA 56 (295)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcchh
Confidence 456677777777777778899999995
No 146
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=25.89 E-value=2.6e+02 Score=20.56 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEE----eCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeC
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIF----PEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iF----PEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g 113 (139)
....+.++++.+..++|....++| |..+...++....|--.-+++-|.+.|+.|.++.+..
T Consensus 154 ~RG~kHl~eL~~l~~~G~ra~vlFvvqr~d~~~F~P~~~~Dp~fa~~l~~A~~~GV~v~a~~~~~ 218 (234)
T PRK00347 154 ERGQKHLRELIELAKEGHRAVLLFLVQRSDIKRFSPADEIDPKYAELLREAVKAGVEVLAYKCEL 218 (234)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEEEeCCCCCEEeECcccCHHHHHHHHHHHHCCCEEEEEEEEE
Confidence 356788888888767665565554 4444443566667777788888999999999998863
No 147
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=25.37 E-value=78 Score=23.18 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC--Cc-----cccccchHHHHHhCCC
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN--KL-----LPFRKGAFRVAIKHQV 104 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~--~~-----~~~k~G~~~la~~~~~ 104 (139)
.+.+.+.+..++. +|..|++|||-..+.... .. .+...-...+|++.++
T Consensus 20 ~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~~~~~~~~~~~~~l~~~A~~~~~ 75 (256)
T PRK10438 20 ANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAAASSLPQDDVVAWMTAKAQQTNA 75 (256)
T ss_pred HHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccchhhccccchHHHHHHHHHHHcCe
Confidence 3444444444432 456899999954431100 00 1223334568888885
No 148
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.36 E-value=1.8e+02 Score=21.59 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=34.6
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHH-hcCCcEEEE
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERL-FKENAKMLI 75 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l-~~~g~~v~i 75 (139)
-+..=++..++.+.|++..+.+....+-++ .+....+-++++++.+ .+++..+++
T Consensus 90 ~~~~KIaS~dl~n~~lL~~~A~tgkPvIlS---TG~stl~EI~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 90 VPAYKIASGDLTNLPLLEYIAKTGKPVILS---TGMSTLEEIERAVEVLREAGNEDLVL 145 (241)
T ss_dssp -SEEEE-GGGTT-HHHHHHHHTT-S-EEEE----TT--HHHHHHHHHHHHHHCT--EEE
T ss_pred CCEEEeccccccCHHHHHHHHHhCCcEEEE---CCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 356678889999999999998877777775 4457788888888888 444444444
No 149
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=25.30 E-value=2.1e+02 Score=19.66 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhcCCcEEEE-EeCCeecC-----CCCCccccccchHHHHHhCCCCEEEEEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLI-FPEGTRNK-----NPNKLLPFRKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~i-FPEGtr~~-----~~~~~~~~k~G~~~la~~~~~pVvPv~i 111 (139)
...+.++++.+.+++.+..+++ -|--.+.. .+..+..+....-.+|++.+++++++.-
T Consensus 91 ~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~ 154 (198)
T cd01821 91 TYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNA 154 (198)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHH
Confidence 4566777777777765544443 33211110 1223455667788899999999999753
No 150
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=25.13 E-value=92 Score=24.26 Aligned_cols=43 Identities=14% Similarity=-0.053 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCeecC--CCC----Cc-----cccccchHHHHHhCCCCEEEEEE
Q psy12561 69 ENAKMLIFPEGTRNK--NPN----KL-----LPFRKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 69 ~g~~v~iFPEGtr~~--~~~----~~-----~~~k~G~~~la~~~~~pVvPv~i 111 (139)
.|..|++|||...+. .+. +. .+...-...+|+++++-++...+
T Consensus 50 ~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g~~~~~l~~~A~~~~i~~v~~i~ 103 (345)
T PRK13286 50 PGMDLVIFPEYSTHGIMYDRQEMYETASTIPGEETAIFAEACRKAKVWGVFSLT 103 (345)
T ss_pred CCCcEEEcCCccccCCCcChHHHHHhcccCCCHHHHHHHHHHHHcCEEEEEecc
Confidence 356899999976651 010 01 11122256678888776554433
No 151
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.99 E-value=1.1e+02 Score=21.54 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCe
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGT 80 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGt 80 (139)
+..+...+.++...|+++|.-++-.|=|+
T Consensus 87 p~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 87 PIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 46788999999999999998888999985
No 152
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=24.37 E-value=1.2e+02 Score=21.81 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=53.9
Q ss_pred hccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 29 LFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 29 ~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
.+.-++|.+++..|.-.|-- -+ =.+.+..+-+.+-+.+++ .+.|.=.|.+. +......|+.|...++.+. -|..
T Consensus 97 yR~r~~g~~~q~~Gi~VIP~-v~-W~~~~s~~~~~~gi~~~~-ivaist~g~~~-~~~~~~~f~~Gl~em~~rl-~P~~- 170 (200)
T PF14386_consen 97 YRSRWLGAYWQSNGIKVIPN-VS-WSDKRSFDFCFDGIPKGS-IVAISTNGCIN-NKEDKKLFLDGLREMLKRL-RPKH- 170 (200)
T ss_pred HHHHHHHHHHHHCCCeEcce-EE-ecCcchHHHHHhhcccCC-EEEEEEecccC-CHHHHHHHHHHHHHHHhcc-CCCe-
Confidence 34567788888888644422 11 234566677778786555 88898899777 6667788999999999998 5533
Q ss_pred EEEeC
Q psy12561 109 LVYSP 113 (139)
Q Consensus 109 v~i~g 113 (139)
|.+.|
T Consensus 171 ilvyG 175 (200)
T PF14386_consen 171 ILVYG 175 (200)
T ss_pred EEEEC
Confidence 33344
No 153
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=24.34 E-value=1.1e+02 Score=19.74 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCc----EEEEEeCCeec
Q psy12561 57 QTLDEAAERLFKENA----KMLIFPEGTRN 82 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~----~v~iFPEGtr~ 82 (139)
.++.++...+.+.+. ++.++|-||-+
T Consensus 65 GTl~~vv~~l~~~~~~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 65 GTLNEVVNGLMGSDREDKPPLGIIPAGTGN 94 (130)
T ss_dssp HHHHHHHHHHCTSTSSS--EEEEEE-SSS-
T ss_pred cHHHHHHHHHhhcCCCccceEEEecCCChh
Confidence 566666777776555 89999999876
No 154
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=24.19 E-value=2e+02 Score=18.33 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 61 EAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 61 ~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
++.+.+.+....|++.-+.-.. ..-...++...........+..|+||.+...
T Consensus 47 ~i~~~i~~s~~~i~vlS~~~~~-S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~ 99 (140)
T smart00255 47 EIDEAIEKSRIAIVVLSPNYAE-SEWCLDELVAALENALEEGGLRVIPIFYEVI 99 (140)
T ss_pred HHHHHHHHCcEEEEEECccccc-ChhHHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 5555565544455555443333 2222223333333322225689999999864
No 155
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=24.07 E-value=3.1e+02 Score=20.41 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeC----CeecCCCCCccccccchHHHHHhCCCCEEEEEEeC
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPE----GTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSP 113 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPE----Gtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g 113 (139)
....+.++++.+..++|-.++++|-- =++..++.++.|-..-+++-|.++|+-|.++....
T Consensus 151 ~RG~KHLreL~~~~~~G~ra~vlf~v~r~d~~~F~P~~e~Dp~fa~~l~~A~~~GVev~~~~~~~ 215 (235)
T COG1489 151 ARGQKHLRELERLAKEGYRAVVLFLVLRSDITRFSPNREIDPKFAELLREAIKAGVEVLAYRFEV 215 (235)
T ss_pred hhhHHHHHHHHHHHHcCCceEEEEEEecCCCcEECcccccCHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 34678888888877775456666642 22332556677777888889999999999998764
No 156
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.64 E-value=82 Score=24.45 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhC
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKH 102 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~ 102 (139)
....++..+.+++.|....++|||..+ +.+. .-+..++..++.+.
T Consensus 131 ~~~~~~~~e~~~~~g~kpyvIp~GG~~-~~g~-lGyv~~a~Ei~~Q~ 175 (323)
T COG2515 131 NASAEELAEEVRKQGGKPYVIPEGGSS-PLGA-LGYVRLALEIAEQA 175 (323)
T ss_pred chhhHHHHHHHHhcCCCCcEeccCCcC-cccc-ccHHHHHHHHHHHH
Confidence 455666677777666678888999855 4332 23444555554443
No 157
>COG4365 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=1.5e+02 Score=24.24 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCeecC-CCCCccccccc--hHHHHH----hCCCCEEEEEE
Q psy12561 58 TLDEAAERLFKENAKMLIFPEGTRNK-NPNKLLPFRKG--AFRVAI----KHQVPIYPLVY 111 (139)
Q Consensus 58 ~~~~~~~~l~~~g~~v~iFPEGtr~~-~~~~~~~~k~G--~~~la~----~~~~pVvPv~i 111 (139)
.+...++.|+.....++| .|.-.. -+|-+..++++ ++.+|+ +.++|||||+=
T Consensus 70 ~~e~~iekLkdp~S~vVv--gGQQAGLltGPlYTihKi~siilLAreqede~~vpVVpVfW 128 (537)
T COG4365 70 GVEALIEKLKDPESRVVV--GGQQAGLLTGPLYTIHKIASIILLAREQEDELDVPVVPVFW 128 (537)
T ss_pred HHHHHHHHhcCCCceEEe--cccccccccCchHHHHHHHHHHHhhHhhhhhhCCCeeEEEE
Confidence 344556666654334444 222220 13334445554 444565 34999999954
No 158
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=22.86 E-value=1.4e+02 Score=23.75 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=20.8
Q ss_pred cCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 68 KENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 68 ~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
++|..++++||............. ....+++.+++|+-
T Consensus 220 ~~g~dlIVlPEta~~~~~~~~~~~---~~~~l~~~~i~II~ 257 (388)
T PRK13825 220 AAGARVVVLPESALGFWTPTTERL---WRESLRGSDVTVIA 257 (388)
T ss_pred ccCCCEEEccCcccccccccccHH---HHHHHHhCCCeEEE
Confidence 456689999998655111111111 13344667777664
No 159
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=22.56 E-value=2.2e+02 Score=21.82 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHh----CCCCEEEEEEeC
Q psy12561 55 GQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK----HQVPIYPLVYSP 113 (139)
Q Consensus 55 ~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~----~~~pVvPv~i~g 113 (139)
..+.+++..+.+++.|..+.+-|- -+ .++.|=..+.++ ++.-|+-++++-
T Consensus 6 ti~~lr~~~~~~r~~gk~Vg~VPT------MG---~LH~GHlsLVr~A~~~~d~VVVSIFVNP 59 (285)
T COG0414 6 TIAELRQAIKALRKEGKRVGLVPT------MG---NLHEGHLSLVRRAKKENDVVVVSIFVNP 59 (285)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEcC------Cc---ccchHHHHHHHHHhhcCCeEEEEEEeCh
Confidence 456677777778877888888883 22 345555555433 366677777764
No 160
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.51 E-value=2.2e+02 Score=21.16 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEe
Q psy12561 57 QTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112 (139)
Q Consensus 57 ~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~ 112 (139)
...+++.+.+.+ | .++||-.||-+ +.. .=-..++..|.+.++.++-.+.+
T Consensus 113 ~~~~~A~~~l~~-g-rVvIf~gGtg~-P~f---TTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 113 YSRREAIRHLEK-G-RVVIFGGGTGN-PGF---TTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred cCHHHHHHHHHc-C-CEEEEeCCCCC-CCC---chHHHHHHHHHHhCCcEEEEecc
Confidence 334566676665 4 79999999877 322 11247778899999998877764
No 161
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=22.39 E-value=2.2e+02 Score=20.21 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=33.9
Q ss_pred ceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
.+++....++...|+ .......+.+ ...++++++.+.+++.|..+.||
T Consensus 20 DlrYat~~NF~g~~i-----Y~~~~c~l~~-----~aA~aL~~a~~~l~~~G~~L~I~ 67 (184)
T PRK10178 20 DLKYATADNLTGKPI-----YREARCLLHK-----DAEAALRKAVSIAQLAGLTLRIY 67 (184)
T ss_pred EeeeccCCCcCCCcc-----ccCCeEEECH-----HHHHHHHHHHHHHHhCCCeEEEE
Confidence 466766666666665 2234444544 67788889999999889888888
No 162
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=22.31 E-value=3.6e+02 Score=21.78 Aligned_cols=75 Identities=24% Similarity=0.292 Sum_probs=47.4
Q ss_pred EEEEchhhhc--cchhHHHHHhcCe--EEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchH
Q psy12561 21 AAVSKKELLF--VFPFGFVAYLAGV--VFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAF 96 (139)
Q Consensus 21 ~~v~~~~~~~--~p~~g~~~~~~g~--i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~ 96 (139)
++|+...+.- +-.++..++++|. .++|- .+ .+.++++ +. .+ .=.||-| |.. ++..--.=-.+++
T Consensus 103 ~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~-~d----~~~~~~a---I~-~n-Tkavf~E-tig-NP~~~v~Die~ia 170 (426)
T COG2873 103 NIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP-DD----PENFEAA---ID-EN-TKAVFAE-TIG-NPGLDVLDIEAIA 170 (426)
T ss_pred eeEeeccccCchHHHHHHHHHhcCcEEEEeCC-CC----HHHHHHH---hC-cc-cceEEEE-ecc-CCCccccCHHHHH
Confidence 5777777763 4467777888884 46655 33 3444333 33 33 4577777 666 4443334456888
Q ss_pred HHHHhCCCCEE
Q psy12561 97 RVAIKHQVPIY 107 (139)
Q Consensus 97 ~la~~~~~pVv 107 (139)
.+|.+.|+|++
T Consensus 171 ~iAh~~gvpli 181 (426)
T COG2873 171 EIAHRHGVPLI 181 (426)
T ss_pred HHHHHcCCcEE
Confidence 99999999866
No 163
>PF10885 DUF2684: Protein of unknown function (DUF2684); InterPro: IPR020263 This entry contains proteins with no known function.
Probab=21.78 E-value=82 Score=19.29 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=21.3
Q ss_pred chhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 32 FPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 32 p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.++|+++...-.++..+ .-. ...++.|||.++..
T Consensus 30 AILgq~f~~fP~fF~~~--------------~i~---~Kt~leIFpDna~~ 63 (89)
T PF10885_consen 30 AILGQFFTRFPVFFESR--------------RIY---LKTWLEIFPDNAGI 63 (89)
T ss_pred HHHHhHhhcCceeeeee--------------eec---ccceeEeccCCCCc
Confidence 35666666666666555 111 23489999997765
No 164
>PRK00784 cobyric acid synthase; Provisional
Probab=21.71 E-value=4.3e+02 Score=21.57 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCcccccc---chHHHHHhCCCCEEEEEE
Q psy12561 55 GQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRK---GAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 55 ~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~---G~~~la~~~~~pVvPv~i 111 (139)
..+.+.+..+.+.++-..++| ||.=+ .-. .++.. -.+.+|+..++|||-|.=
T Consensus 111 ~~~~I~~~~~~l~~~~D~vIV--EGaGg-~~~--~~L~~~~~~~~dlak~l~~PVILV~~ 165 (488)
T PRK00784 111 LLEAVLESLDRLAAEYDVVVV--EGAGS-PAE--INLRDRDIANMGFAEAADAPVILVAD 165 (488)
T ss_pred hHHHHHHHHHHHHhcCCEEEE--ECCCC-ccc--cCcccCCchhHHHHHHcCCCEEEEEe
Confidence 345555555555543334554 87622 110 23322 377899999999998864
No 165
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=21.25 E-value=3.8e+02 Score=21.62 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCcccc--ccchHHHHHhCCCCEEEEEE
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPF--RKGAFRVAIKHQVPIYPLVY 111 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~--k~G~~~la~~~~~pVvPv~i 111 (139)
.+.+++..+.+.++...++| ||.-...++. .+. ....+.+|+..++||+-|.=
T Consensus 64 ~~~i~~~~~~~~~~~D~viV--EGagGl~~g~-~p~~~~~s~adlAk~l~~pVILV~~ 118 (449)
T TIGR00379 64 EAQIQECFHRHSKGTDYSII--EGVRGLYDGI-SAITDYGSTASVAKALDAPIVLVMN 118 (449)
T ss_pred HHHHHHHHHHhcccCCEEEE--ecCCccccCC-CCCCCCccHHHHHHHhCCCEEEEEC
Confidence 45555555656544335555 8874311221 122 24577899999999998874
No 166
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=20.98 E-value=99 Score=20.41 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLI 75 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~i 75 (139)
.+...+++.+.++|..|++++||
T Consensus 93 ~~~~~tl~amekAL~sGn~s~Vl 115 (119)
T PF03846_consen 93 RNPQSTLEAMEKALRSGNYSAVL 115 (119)
T ss_dssp SSTTHHHHHHHHHHHHT-EEEEE
T ss_pred CCcccHHHHHHHHHHhCCCeEEE
Confidence 34567777778888888888776
No 167
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=20.96 E-value=2.5e+02 Score=21.50 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=32.4
Q ss_pred hHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 34 FGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 34 ~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
+..++-..|+.+|.| ..........+.+.++++..|.+++..
T Consensus 160 ~~~la~a~G~~yVAr-~~~~~~~~l~~~i~kA~~~~Gps~I~v 201 (294)
T COG1013 160 PGLLAMAAGATYVAR-ASVGDPKDLTEKIKKAAEHKGPSFIDV 201 (294)
T ss_pred HHHHHHHCCCCeEEE-ecccCHHHHHHHHHHHHhccCCeEEEE
Confidence 456777889999999 776667777788888888778776654
No 168
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=3.8e+02 Score=20.31 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=46.7
Q ss_pred CeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc-eeecCC
Q psy12561 42 GVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF-YFIDME 120 (139)
Q Consensus 42 g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~-~~~~~~ 120 (139)
|.+.+|. ..+..+.+++.++.+.+.... .. ..|.+.|+-.| |+|+++... +..+.-
T Consensus 16 Gil~ldK-P~G~tS~~~v~~vkkil~~~K----------~G-H~GTLDP~atG-----------vLpi~ig~aTKl~~~l 72 (271)
T COG0130 16 GVINLDK-PPGPTSHEVVAWVKRILGVEK----------AG-HGGTLDPLATG-----------VLPICLGEATKLVQYL 72 (271)
T ss_pred ceEEeeC-CCCCCHHHHHHHHHHHhCccc----------cc-cccccCCcccc-----------eEEEEechhHhHHHHH
Confidence 8889988 666778888888877665321 11 56667777777 578888655 554443
Q ss_pred CCceeceEEEEEEeccc
Q psy12561 121 HKRFGYGKCFIYLVQLT 137 (139)
Q Consensus 121 ~~~~~~~~v~i~i~~p~ 137 (139)
....+--..++++|.-+
T Consensus 73 ~~~~K~Y~a~~~lG~~t 89 (271)
T COG0130 73 LDADKEYVATVRLGDQT 89 (271)
T ss_pred hhCCcEEEEEEEeCCcC
Confidence 33334446667766543
No 169
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=20.32 E-value=1.8e+02 Score=20.20 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=28.3
Q ss_pred HHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCc
Q psy12561 64 ERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPF 114 (139)
Q Consensus 64 ~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~ 114 (139)
+.+.++...++| ||.-. ... ......--+.+|+..++||+.|.=.+.
T Consensus 94 ~~l~~~~D~vlV--EGag~-~~~-~~~~~~~n~dia~~L~a~vIlV~~~~~ 140 (199)
T PF13500_consen 94 KELAEEYDVVLV--EGAGG-LMV-PIFSGDLNADIAKALGAPVILVASGRL 140 (199)
T ss_dssp HHCHTTTCEEEE--EESSS-TTS-ECCTTEEHHHHHHHHT-EEEEEEESST
T ss_pred HHHhhcCCEEEE--eCCcc-cCc-ccccChHHHHHHHHcCCCEEEEeCCCC
Confidence 445554434544 87666 332 222235667899999999999987543
No 170
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.28 E-value=3.6e+02 Score=19.83 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=43.1
Q ss_pred ccchhHHHHHhcCeEEE--------EccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHh
Q psy12561 30 FVFPFGFVAYLAGVVFI--------SRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIK 101 (139)
Q Consensus 30 ~~p~~g~~~~~~g~i~v--------~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~ 101 (139)
.++-++++.+..|.-.+ .. ....-..+.+.++.+.+++++ .-+||-|=..+ + ..-.-+..+|++
T Consensus 159 ~H~af~Y~~~~yGl~~~~~~~~~~~~~-~~~~ps~~~l~~l~~~ik~~~-v~~if~e~~~~--~----k~~~~l~~la~~ 230 (264)
T cd01020 159 TEPVFDYLLDALGMKERTPKGYTATTE-SETEPSPADIAAFQNAIKNRQ-IDALIVNPQQA--S----SATTNITGLAKR 230 (264)
T ss_pred eCchHHHHHHHCCCcccCHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCC-CCEEEeCCCCC--c----HHHHHHHHHHHH
Confidence 35677888888886433 11 122345778888888888776 44556552222 1 112223357899
Q ss_pred CCCCEEEE
Q psy12561 102 HQVPIYPL 109 (139)
Q Consensus 102 ~~~pVvPv 109 (139)
++++++.+
T Consensus 231 ~~~~v~~l 238 (264)
T cd01020 231 SGVPVVEV 238 (264)
T ss_pred cCCCEEee
Confidence 99998654
No 171
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.06 E-value=2.7e+02 Score=21.41 Aligned_cols=42 Identities=5% Similarity=-0.012 Sum_probs=30.3
Q ss_pred hHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEE
Q psy12561 34 FGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIF 76 (139)
Q Consensus 34 ~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iF 76 (139)
+..++...|...|.+ .+.....+..+.+.+++..+|.++++.
T Consensus 163 i~~i~~a~g~~yVA~-~~~~~~~~~~~~i~~A~~~~Gps~I~~ 204 (300)
T PRK11864 163 VPDIMAAHKVPYVAT-ASIAYPEDFIRKLKKAKEIRGFKFIHL 204 (300)
T ss_pred HHHHHHHcCCCEEEE-EeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 356778889989988 776566667777777777778666653
Done!