Query psy12561
Match_columns 139
No_of_seqs 139 out of 1124
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 22:30:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.9 6.9E-24 2.4E-28 160.7 5.7 136 2-139 139-312 (367)
2 1f89_A 32.5 kDa protein YLR351 73.9 4.1 0.00014 29.3 4.3 55 53-108 26-96 (291)
3 3p8k_A Hydrolase, carbon-nitro 72.5 2.6 8.7E-05 30.4 2.9 57 52-108 35-100 (281)
4 1uf5_A N-carbamyl-D-amino acid 71.4 3.9 0.00013 29.5 3.7 56 53-108 21-93 (303)
5 3ivz_A Nitrilase; alpha-beta s 69.6 3.9 0.00013 29.0 3.3 55 53-107 17-84 (262)
6 2w1v_A Nitrilase-2, nitrilase 68.8 3.9 0.00013 29.1 3.2 54 54-107 19-81 (276)
7 3hkx_A Amidase; alpha-beta-BET 68.5 3.7 0.00013 29.5 3.0 55 52-107 35-100 (283)
8 2e11_A Hydrolase; dimethylarse 63.2 3.2 0.00011 29.4 1.8 54 54-108 20-81 (266)
9 1ems_A Nitfhit, NIT-fragIle hi 62.4 8.1 0.00028 29.6 4.0 55 54-109 30-95 (440)
10 2lnd_A De novo designed protei 52.1 18 0.00061 21.4 3.4 27 56-82 37-63 (112)
11 1vs1_A 3-deoxy-7-phosphoheptul 51.4 64 0.0022 23.3 7.0 86 19-106 123-210 (276)
12 2wqp_A Polysialic acid capsule 50.1 34 0.0012 25.7 5.5 84 18-106 125-210 (349)
13 2vhh_A CG3027-PA; hydrolase; 2 48.8 17 0.00058 27.7 3.7 53 56-108 98-165 (405)
14 1vli_A Spore coat polysacchari 43.0 90 0.0031 23.8 6.9 84 18-106 135-221 (385)
15 3g8r_A Probable spore coat pol 42.8 1E+02 0.0036 23.1 7.2 61 18-82 112-172 (350)
16 4f4h_A Glutamine dependent NAD 38.5 21 0.00071 28.6 2.9 32 51-82 20-51 (565)
17 2dyu_A Formamidase; AMIF, CEK, 35.8 28 0.00097 25.5 3.1 54 55-108 35-101 (334)
18 2uxy_A Aliphatic amidase; nitr 33.0 34 0.0011 25.2 3.1 54 55-108 34-100 (341)
19 3n05_A NH(3)-dependent NAD(+) 32.8 31 0.0011 27.6 3.1 31 52-82 19-49 (590)
20 2pyg_A Poly(beta-D-mannuronate 30.5 38 0.0013 25.0 3.1 29 54-82 17-45 (377)
21 3gi1_A LBP, laminin-binding pr 29.0 1.2E+02 0.0041 21.7 5.5 69 31-109 186-257 (286)
22 3ilv_A Glutamine-dependent NAD 29.0 36 0.0012 27.5 2.9 57 51-107 19-84 (634)
23 3sdb_A Glutamine-dependent NAD 27.3 40 0.0014 27.6 2.9 32 51-82 26-57 (680)
24 4edg_A DNA primase; catalytic 26.3 1E+02 0.0036 22.8 4.8 73 3-79 160-234 (329)
25 1pq4_A Periplasmic binding pro 23.5 1.8E+02 0.006 20.8 5.5 68 31-108 197-265 (291)
26 2qv5_A AGR_C_5032P, uncharacte 23.4 1.4E+02 0.0049 21.3 4.9 50 53-113 138-189 (261)
27 2nly_A BH1492 protein, diverge 22.7 2E+02 0.007 20.2 5.6 50 53-113 111-162 (245)
28 3g2b_A Coenzyme PQQ synthesis 21.3 39 0.0013 20.2 1.3 13 70-82 28-40 (95)
29 2o1e_A YCDH; alpha-beta protei 21.1 1.6E+02 0.0055 21.3 4.9 69 31-109 197-268 (312)
30 3ktw_A SRP19, signal recogniti 20.9 1.6E+02 0.0054 18.2 5.0 61 66-133 13-82 (109)
31 2au3_A DNA primase; zinc ribbo 20.2 2.7E+02 0.0094 20.9 6.2 73 3-79 252-326 (407)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.89 E-value=6.9e-24 Score=160.73 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=110.9
Q ss_pred cchhhhhhhhhhccc-----CCceEEEEchhhhccchhHHH--HHhcCeEEE----E------ccCCchhhHHHHHHHHH
Q psy12561 2 YGFFFLSGLFHVWPV-----MRDVAAVSKKELLFVFPFGFV--AYLAGVVFI----S------RLSKSKSGQQTLDEAAE 64 (139)
Q Consensus 2 ~s~~D~~~l~~~~~~-----~~~~~~v~~~~~~~~p~~g~~--~~~~g~i~v----~------r~~~~~~~~~~~~~~~~ 64 (139)
.|.+|+.++..+++. .+++.|||++++.+.|+...+ .+.++||+. + | ++.+.+.++++++.+
T Consensus 139 QS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r-~~~r~n~ksl~~~~~ 217 (367)
T 1iuq_A 139 QTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTE-TKRKANTRSLKEMAL 217 (367)
T ss_dssp CCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHH-HHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhh-hhhHHHHHHHHHHHH
Confidence 589999999999971 138999999999988876332 134557775 6 7 777889999999999
Q ss_pred HHhcCCcEEEEEeCCeecCCC----CC--ccccccchH----HHHHhCCCC--EEEEEEeCceeecCC---------CCc
Q psy12561 65 RLFKENAKMLIFPEGTRNKNP----NK--LLPFRKGAF----RVAIKHQVP--IYPLVYSPFYFIDME---------HKR 123 (139)
Q Consensus 65 ~l~~~g~~v~iFPEGtr~~~~----~~--~~~~k~G~~----~la~~~~~p--VvPv~i~g~~~~~~~---------~~~ 123 (139)
.|+++|.+++|||||||+ ++ +. ..+|+.|++ ++|.++++| |+|++|.+++.++.. .+.
T Consensus 218 ~Lk~GG~sI~IFPEGTRs-R~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~t~~imppp~~ve~~~g~~r~ 296 (367)
T 1iuq_A 218 LLRGGSQLIWIAPSGGRD-RPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRV 296 (367)
T ss_dssp HHHHCCCEEEECTTCSCC-CBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CC
T ss_pred HHHcCCeEEEEeCCCCCC-CCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEEeccccCCcccccccccccce
Confidence 999988899999999999 53 55 456999999 999999999 999999966777663 334
Q ss_pred eeceEEEEEEeccccC
Q psy12561 124 FGYGKCFIYLVQLTIF 139 (139)
Q Consensus 124 ~~~~~v~i~i~~p~~~ 139 (139)
.+++.|.|+|++|+.+
T Consensus 297 i~~~~V~v~ig~pI~~ 312 (367)
T 1iuq_A 297 IAFNGAGLSVAPEISF 312 (367)
T ss_dssp CCCBCCEEEECCCCCH
T ss_pred eecccEEEEECCccch
Confidence 5778999999999863
No 2
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=73.93 E-value=4.1 Score=29.26 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHH--hcCCcEEEEEeCCeecCCCC---------Cc-----cccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERL--FKENAKMLIFPEGTRNKNPN---------KL-----LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l--~~~g~~v~iFPEGtr~~~~~---------~~-----~~~k~G~~~la~~~~~pVvP 108 (139)
..+.+.+.++.+.. .+.|..+++|||-..+ ... .. .+...-...+|++.++.|+-
T Consensus 26 ~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 96 (291)
T 1f89_A 26 MANLQRAATFIERAMKEQPDTKLVVLPECFNS-PYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVG 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEECCTTTTS-CSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEEC
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEcCCCccc-CCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEe
Confidence 34455555666555 5567789999997664 211 01 22334456688888888763
No 3
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=72.46 E-value=2.6 Score=30.40 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC---------ccccccchHHHHHhCCCCEEE
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK---------LLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~---------~~~~k~G~~~la~~~~~pVvP 108 (139)
...+.+.+.++.+...++|..+++|||-..+..... ..+...-...+|++.++.|+-
T Consensus 35 ~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~ 100 (281)
T 3p8k_A 35 SSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVA 100 (281)
T ss_dssp HHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEE
Confidence 344556666666666666778999999765511110 023344556688888887663
No 4
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=71.40 E-value=3.9 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCC-----C------------ccccccchHHHHHhCCCCEEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPN-----K------------LLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~-----~------------~~~~k~G~~~la~~~~~pVvP 108 (139)
..+.+.+.++.+...++|..+++|||-..+.... . ..+...-...+|++.++.|+-
T Consensus 21 ~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 93 (303)
T 1uf5_A 21 EQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNL 93 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCeEEEE
Confidence 3445555555555555667899999976541110 0 123334466678888888763
No 5
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=69.60 E-value=3.9 Score=28.95 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC-------------ccccccchHHHHHhCCCCEE
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK-------------LLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~-------------~~~~k~G~~~la~~~~~pVv 107 (139)
..+.+.+.++.+...++|..+++|||-..+..... ..+...-...+|++.++.|+
T Consensus 17 ~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv 84 (262)
T 3ivz_A 17 DKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIV 84 (262)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEE
Confidence 44555555555555556778999999765511111 01233345667888888766
No 6
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=68.81 E-value=3.9 Score=29.14 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCC-CCc--------cccccchHHHHHhCCCCEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNP-NKL--------LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~-~~~--------~~~k~G~~~la~~~~~pVv 107 (139)
.+.+.+.++.+...+.|..+++|||...+... ... .+...-...+|++.++.|+
T Consensus 19 ~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 81 (276)
T 2w1v_A 19 DNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLI 81 (276)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEE
Confidence 44555555555555566689999997654111 111 1233345567888888776
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=68.47 E-value=3.7 Score=29.54 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC--c---------cccccchHHHHHhCCCCEE
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK--L---------LPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~--~---------~~~k~G~~~la~~~~~pVv 107 (139)
...+.+.+.++.+...++|..+++|||-..+ .... + .+...-...+|++.++.|+
T Consensus 35 ~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~-gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv 100 (283)
T 3hkx_A 35 PQHNLDLIDDAAARASEQGAQLLLTPELFGF-GYVPSQICAQVSAEQVDAARSRLRGIARDRGIALV 100 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCTTGGG-CSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcCCCccc-CCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEE
Confidence 3445555566666555567789999997665 2111 1 1233445667888887765
No 8
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=63.19 E-value=3.2 Score=29.40 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCc--------cccccchHHHHHhCCCCEEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
.+.+.+.++.+.. +.|..+++|||-..+...... .+...-...+|++.++.|+-
T Consensus 20 ~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv~ 81 (266)
T 2e11_A 20 GNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITG 81 (266)
T ss_dssp HHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEEE
Confidence 3444444554444 456689999997665111111 12233455678888887763
No 9
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=62.45 E-value=8.1 Score=29.56 Aligned_cols=55 Identities=16% Similarity=0.070 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCc-----------cccccchHHHHHhCCCCEEEE
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKL-----------LPFRKGAFRVAIKHQVPIYPL 109 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~-----------~~~k~G~~~la~~~~~pVvPv 109 (139)
.+.+.+.++.+...++|..+++|||...+ ..... .+...-...+|++.++.|+-=
T Consensus 30 ~nl~~~~~li~~A~~~gadlvv~PE~~~~-~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 95 (440)
T 1ems_A 30 KNFQAAKNMIERAGEKKCEMVFLPECFDF-IGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLG 95 (440)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECTTCSC-CCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCcccc-cCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEec
Confidence 44555555555555567789999997654 22110 123334556788889887643
No 10
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=52.13 E-value=18 Score=21.42 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.+.++...+.++.+|.++++|-.|...
T Consensus 37 sqdirdiiksmkdngkplvvfvngasq 63 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQ 63 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCH
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCccc
Confidence 456677788888889999999998765
No 11
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=51.36 E-value=64 Score=23.29 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=53.1
Q ss_pred ceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc-EEEEEeCCeecCCCCCccccccc-hH
Q psy12561 19 DVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA-KMLIFPEGTRNKNPNKLLPFRKG-AF 96 (139)
Q Consensus 19 ~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~-~v~iFPEGtr~~~~~~~~~~k~G-~~ 96 (139)
+..-+...+..+.+++..+.+....+-+.+ +- ..+...+..+.+.+...|. .+++-==|+++.++.......-. ..
T Consensus 123 d~~kIgs~~~~n~~ll~~~a~~~kPV~lk~-G~-~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~ 200 (276)
T 1vs1_A 123 DMLQIGARNMQNFPLLREVGRSGKPVLLKR-GF-GNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVA 200 (276)
T ss_dssp SEEEECGGGTTCHHHHHHHHHHTCCEEEEC-CT-TCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHH
T ss_pred CeEEECcccccCHHHHHHHHccCCeEEEcC-CC-CCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHH
Confidence 477788888888889988887776777765 33 1367777788887776553 44443338876222123334444 33
Q ss_pred HHHHhCCCCE
Q psy12561 97 RVAIKHQVPI 106 (139)
Q Consensus 97 ~la~~~~~pV 106 (139)
.+....++||
T Consensus 201 ~lk~~~~lpV 210 (276)
T 1vs1_A 201 VLKEATHLPV 210 (276)
T ss_dssp HHHHHBSSCE
T ss_pred HHHHHhCCCE
Confidence 3334458875
No 12
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=50.11 E-value=34 Score=25.74 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=56.2
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHH
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFR 97 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~ 97 (139)
-++.=++..++.+.|++..+.+....+-+.| +- ...+-+..+.+.+.+.|..+++- +++++ .+.......-.+..
T Consensus 125 v~~~KI~S~~~~n~~LL~~va~~gkPviLst-Gm--at~~Ei~~Ave~i~~~G~~iiLl-hc~s~-Yp~~~~~~nL~ai~ 199 (349)
T 2wqp_A 125 IPAYKIGSGECNNYPLIKLVASFGKPIILST-GM--NSIESIKKSVEIIREAGVPYALL-HCTNI-YPTPYEDVRLGGMN 199 (349)
T ss_dssp CSCEEECGGGTTCHHHHHHHHTTCSCEEEEC-TT--CCHHHHHHHHHHHHHHTCCEEEE-ECCCC-SSCCGGGCCTHHHH
T ss_pred CCEEEECcccccCHHHHHHHHhcCCeEEEEC-CC--CCHHHHHHHHHHHHHcCCCEEEE-eccCC-CCCChhhcCHHHHH
Confidence 3577889999999999999988888899987 44 47777788888887655355554 67776 43322233333333
Q ss_pred -HHHhC-CCCE
Q psy12561 98 -VAIKH-QVPI 106 (139)
Q Consensus 98 -la~~~-~~pV 106 (139)
+.... ++||
T Consensus 200 ~lk~~f~~lpV 210 (349)
T 2wqp_A 200 DLSEAFPDAII 210 (349)
T ss_dssp HHHHHCTTSEE
T ss_pred HHHHHCCCCCE
Confidence 33445 6654
No 13
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=48.77 E-value=17 Score=27.71 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCeecCCC---CC------c------cccccchHHHHHhCCCCEEE
Q psy12561 56 QQTLDEAAERLFKENAKMLIFPEGTRNKNP---NK------L------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 56 ~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~---~~------~------~~~k~G~~~la~~~~~pVvP 108 (139)
.+.+.++.+...+.|..+++|||-..+... .. . .+...-...+|++.++.|+-
T Consensus 98 l~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~ 165 (405)
T 2vhh_A 98 WNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIH 165 (405)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHCCEEEEE
Confidence 444445555444556789999996543110 00 0 11122356688888888763
No 14
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=43.02 E-value=90 Score=23.81 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=55.9
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc-EEEEEeCCeecCCCCCccccccchH
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA-KMLIFPEGTRNKNPNKLLPFRKGAF 96 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~-~v~iFPEGtr~~~~~~~~~~k~G~~ 96 (139)
-++.=++..++.+.|++..+.+....+-+.| +- ...+-+..+.+.+.+.|. .+++- +++++ .+.......-.+.
T Consensus 135 vd~~KIgS~~~~N~pLL~~va~~gKPViLSt-Gm--aTl~Ei~~Ave~i~~~Gn~~iiLl-hc~s~-YPtp~~~~nL~aI 209 (385)
T 1vli_A 135 PSAFKIASYEINHLPLLKYVARLNRPMIFST-AG--AEISDVHEAWRTIRAEGNNQIAIM-HCVAK-YPAPPEYSNLSVI 209 (385)
T ss_dssp CSCEEECGGGTTCHHHHHHHHTTCSCEEEEC-TT--CCHHHHHHHHHHHHTTTCCCEEEE-EECSS-SSCCGGGCCTTHH
T ss_pred CCEEEECcccccCHHHHHHHHhcCCeEEEEC-CC--CCHHHHHHHHHHHHHCCCCcEEEE-eccCC-CCCChhhcCHHHH
Confidence 3678889999999999999998888899987 44 478888888888887653 44443 56666 3322222333333
Q ss_pred H-HHHhC-CCCE
Q psy12561 97 R-VAIKH-QVPI 106 (139)
Q Consensus 97 ~-la~~~-~~pV 106 (139)
. +.... ++||
T Consensus 210 ~~Lk~~f~~lpV 221 (385)
T 1vli_A 210 PMLAAAFPEAVI 221 (385)
T ss_dssp HHHHHHSTTSEE
T ss_pred HHHHHHcCCCCE
Confidence 3 33445 5654
No 15
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=42.78 E-value=1e+02 Score=23.11 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=46.3
Q ss_pred CceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 18 ~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
-++.=++..++.+.|++..+.+....+-+.| +- ...+-+..+.+.+.++|..+++. ..+++
T Consensus 112 v~~~KI~S~~~~N~pLL~~va~~gKPviLst-Gm--stl~Ei~~Ave~i~~~g~~viLl-hC~s~ 172 (350)
T 3g8r_A 112 IEIIKIASCSFTDWPLLERIARSDKPVVAST-AG--ARREDIDKVVSFMLHRGKDLTIM-HCVAE 172 (350)
T ss_dssp CCEEEECSSSTTCHHHHHHHHTSCSCEEEEC-TT--CCHHHHHHHHHHHHTTTCCEEEE-ECCCC
T ss_pred CCEEEECcccccCHHHHHHHHhhCCcEEEEC-CC--CCHHHHHHHHHHHHHcCCCEEEE-ecCCC
Confidence 4577888899999999999998888899988 54 57788888888888765565553 34443
No 16
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=38.54 E-value=21 Score=28.59 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=21.9
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.++.++..++|..+++|||=..+
T Consensus 20 D~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~lt 51 (565)
T 4f4h_A 20 DFAGNVAKIVAAAQAAHDAGAHFLIAPELALS 51 (565)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTTTT
T ss_pred cHHHHHHHHHHHHHHHHHCCCcEEECCCCccc
Confidence 33455666666666666678899999995444
No 17
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=35.78 E-value=28 Score=25.54 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhc--CCcEEEEEeCCeecCC--C-CCc--------cccccchHHHHHhCCCCEEE
Q psy12561 55 GQQTLDEAAERLFK--ENAKMLIFPEGTRNKN--P-NKL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 55 ~~~~~~~~~~~l~~--~g~~v~iFPEGtr~~~--~-~~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
+.+.+.++.+...+ .|..+++|||-..+.. + ... .+...-...+|++.++.++-
T Consensus 35 nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~ 101 (334)
T 2dyu_A 35 NIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVF 101 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEE
Confidence 33444444444443 4678999999755411 1 001 12223355677777887664
No 18
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=32.97 E-value=34 Score=25.25 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhc--CCcEEEEEeCCeecCC-CC--Cc--------cccccchHHHHHhCCCCEEE
Q psy12561 55 GQQTLDEAAERLFK--ENAKMLIFPEGTRNKN-PN--KL--------LPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 55 ~~~~~~~~~~~l~~--~g~~v~iFPEGtr~~~-~~--~~--------~~~k~G~~~la~~~~~pVvP 108 (139)
+.+.+.++.+...+ .|..+++|||-..+.. .. .. .+...-...+|++.++.++-
T Consensus 34 Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~ 100 (341)
T 2uxy_A 34 NARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRACRKANVWGVF 100 (341)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCHHHHHHHhccCCCHHHHHHHHHHHHhCcEEEE
Confidence 33444444444443 4668999999765411 11 00 12223355677788887764
No 19
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=32.81 E-value=31 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 52 SKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 52 ~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
...+.+.+.++.+...++|..+++|||-..+
T Consensus 19 ~~~N~~~i~~~i~~A~~~gadLvvfPEl~lt 49 (590)
T 3n05_A 19 IAGNAEAILRWTRHSAEQGAHLVAFPEMALT 49 (590)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEECCTTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEcCccccc
Confidence 3455566666666666677799999997766
No 20
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Probab=30.55 E-value=38 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 54 SGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 54 ~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
.+.++++++.++..+.|...+.+|+|+..
T Consensus 17 ddt~aiq~Ai~~a~~~gg~~v~~p~G~y~ 45 (377)
T 2pyg_A 17 DDRASIQAAIDAAYAAGGGTVYLPAGEYR 45 (377)
T ss_dssp ECHHHHHHHHHHHHHTTSEEEEECSEEEE
T ss_pred chHHHHHHHHHHHHhcCCCEEEECCeEEE
Confidence 45677777777776543488999999865
No 21
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.99 E-value=1.2e+02 Score=21.68 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=43.1
Q ss_pred cchhHHHHHhcCeEEEEcc-C--CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEE
Q psy12561 31 VFPFGFVAYLAGVVFISRL-S--KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 31 ~p~~g~~~~~~g~i~v~r~-~--~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVv 107 (139)
.+-++++.+..|.-.+.-. . ...-..+.+.++.+.+++.+ .-+||-|-..+ . +-+-.+|+++|++|+
T Consensus 186 H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~if~e~~~~---~------~~~~~la~~~g~~v~ 255 (286)
T 3gi1_A 186 HTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYN-VKTIFAEDNVN---P------KIAHAIAKSTGAKVK 255 (286)
T ss_dssp ESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTT-CCEEEECTTSC---T------HHHHHHHHTTTCEEE
T ss_pred CCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCCC---h------HHHHHHHHHhCCeEE
Confidence 5566888888886544320 1 12335678888888888777 55666663333 1 223457899999988
Q ss_pred EE
Q psy12561 108 PL 109 (139)
Q Consensus 108 Pv 109 (139)
.+
T Consensus 256 ~l 257 (286)
T 3gi1_A 256 TL 257 (286)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 22
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=28.99 E-value=36 Score=27.55 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=32.4
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCC-c-------cccccchHHHHHhC-CCCEE
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK-L-------LPFRKGAFRVAIKH-QVPIY 107 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~-~-------~~~k~G~~~la~~~-~~pVv 107 (139)
+...+.+.+.++.+...++|..+++|||-..+..... + .+.......+|+++ ++.|+
T Consensus 19 d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~~~~l~~la~~~~~i~iv 84 (634)
T 3ilv_A 19 DWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAASCTDITVS 84 (634)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHhhChhhhHHHHHHHHHHHHhCCCCEEE
Confidence 3345556666666666666778999999765511111 1 11233455677775 65543
No 23
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=27.25 E-value=40 Score=27.58 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=21.7
Q ss_pred CchhhHHHHHHHHHHHhcCCcEEEEEeCCeec
Q psy12561 51 KSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82 (139)
Q Consensus 51 ~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~ 82 (139)
+...+.+.+.++.+...+.|..+++|||-..+
T Consensus 26 D~~~N~~~i~~~i~~A~~~gadLvVfPEl~lt 57 (680)
T 3sdb_A 26 DPAANAASVLDMARACHDDGAALAVFPELTLS 57 (680)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCTTTTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEcCCCccc
Confidence 33445566666666666667799999997655
No 24
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=26.31 E-value=1e+02 Score=22.78 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc--EEEEEeCC
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA--KMLIFPEG 79 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~--~v~iFPEG 79 (139)
|++|.+.+...-- .+..-.....+. ..-+..+.+...-+.+.- ++-....++..++.+.+.+.|. .++..|+|
T Consensus 160 G~~Dvial~q~Gi--~naVA~lGTalt-~~~~~~L~r~~~~Vil~~-D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP~g 234 (329)
T 4edg_A 160 GFMDVIKSDTAGL--KNVVATMGTQLS-DEHITFIRKLTSNITLMF-DGDFAGSEATLKTGQHLLQQGLNVFVIQLPSG 234 (329)
T ss_dssp CHHHHHHHHHHTC--CSEEECSSSCCC-HHHHHHHHHHCSEEEECC-CSSHHHHHHHHHHHHHHHHTTCEEEECCCCTT
T ss_pred cHHHHHHHHHcCC--CeEEECCccCCC-HHHHHHHHhcCCeEEEEe-CCCHHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 5778877655422 233222222221 122344444455565555 4444667777777777776553 46668887
No 25
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.50 E-value=1.8e+02 Score=20.83 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=42.5
Q ss_pred cchhHHHHHhcCeEEEEcc-CCchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE
Q psy12561 31 VFPFGFVAYLAGVVFISRL-SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP 108 (139)
Q Consensus 31 ~p~~g~~~~~~g~i~v~r~-~~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP 108 (139)
.+-++++.+..|.-.+.-. .+..-..+.+.++.+.+++.+-. +||-|-..+ .+-+-.+|+++|++++.
T Consensus 197 H~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~-~If~e~~~~---------~~~~~~ia~~~g~~v~~ 265 (291)
T 1pq4_A 197 HPSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLT-MVFGETQFS---------TKSSEAIAAEIGAGVEL 265 (291)
T ss_dssp SCCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCC-EEEEETTSC---------CHHHHHHHHHHTCEEEE
T ss_pred CCchHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCCC---------hHHHHHHHHHcCCeEEE
Confidence 4556888888887655431 12233568888888888887744 455553222 11234578999999864
No 26
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=23.40 E-value=1.4e+02 Score=21.28 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE--EEEeC
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP--LVYSP 113 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP--v~i~g 113 (139)
..+...|+.+.+.|++.| +.+.-.||.. + +=+.++|++.|+|..- |+++.
T Consensus 138 T~~~~~M~~vm~~L~~~g--L~FlDS~Ts~-~--------S~a~~~A~~~gvp~~~rdvFLD~ 189 (261)
T 2qv5_A 138 LAEQSALEPVMRDIGKRG--LLFLDDGSSA-Q--------SLSGGIAKAISAPQGFADVLLDG 189 (261)
T ss_dssp GGCHHHHHHHHHHHHHTT--CEEEECSCCT-T--------CCHHHHHHHHTCCEEECSEETTS
T ss_pred hcCHHHHHHHHHHHHHCC--CEEEcCCCCc-c--------cHHHHHHHHcCCCeEEeeeecCC
Confidence 456789999999998766 5666666555 2 3366788999999887 66664
No 27
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=22.65 E-value=2e+02 Score=20.23 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEEE--EEEeC
Q psy12561 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYP--LVYSP 113 (139)
Q Consensus 53 ~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVvP--v~i~g 113 (139)
..+...|+.+.+.+++.| +.+.-.+|.. ++-+.++|++.|+|..- |++++
T Consensus 111 T~~~~~m~~vm~~l~~~g--L~fvDS~Ts~---------~S~a~~~A~~~gvp~~~rdvFLD~ 162 (245)
T 2nly_A 111 VENEKIMRAILEVVKEKN--AFIIDSGTSP---------HSLIPQLAEELEVPYATRSIFLDN 162 (245)
T ss_dssp GGCHHHHHHHHHHHHHTT--CEEEECCCCS---------SCSHHHHHHHTTCCEEECCEESCC
T ss_pred hcCHHHHHHHHHHHHHCC--CEEEcCCCCc---------ccHHHHHHHHcCCCeEEeeEECCC
Confidence 456788889999888766 5666666544 23466788888998887 67765
No 28
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=21.32 E-value=39 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=11.2
Q ss_pred CcEEEEEeCCeec
Q psy12561 70 NAKMLIFPEGTRN 82 (139)
Q Consensus 70 g~~v~iFPEGtr~ 82 (139)
|.+++++|||...
T Consensus 28 ~~~VlL~peg~i~ 40 (95)
T 3g2b_A 28 DQWVLLAPERVVE 40 (95)
T ss_dssp TEEEEECCCCCCC
T ss_pred CcEEEECCCceee
Confidence 5699999999877
No 29
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=21.14 E-value=1.6e+02 Score=21.33 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=44.9
Q ss_pred cchhHHHHHhcCeEEEEcc-C--CchhhHHHHHHHHHHHhcCCcEEEEEeCCeecCCCCCccccccchHHHHHhCCCCEE
Q psy12561 31 VFPFGFVAYLAGVVFISRL-S--KSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIY 107 (139)
Q Consensus 31 ~p~~g~~~~~~g~i~v~r~-~--~~~~~~~~~~~~~~~l~~~g~~v~iFPEGtr~~~~~~~~~~k~G~~~la~~~~~pVv 107 (139)
.+.++++.+..|.-.+.-. . ...-..+.+.++.+.+++.+ .-+||-|-..+ .+-+-.+|+++|++++
T Consensus 197 H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~-v~~If~e~~~~---------~~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 197 HTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHN-VKVIYFEEIAS---------SKVADTLASEIGAKTE 266 (312)
T ss_dssp SCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSC-CCEEECSSCCC---------HHHHHHHHHHTCCEEE
T ss_pred CCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCCC---------hHHHHHHHHHhCCcEE
Confidence 5567888888887555331 1 12345788888888888777 55667763333 1334557899999986
Q ss_pred EE
Q psy12561 108 PL 109 (139)
Q Consensus 108 Pv 109 (139)
.+
T Consensus 267 ~l 268 (312)
T 2o1e_A 267 VL 268 (312)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 30
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=20.95 E-value=1.6e+02 Score=18.22 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=37.1
Q ss_pred HhcCCcEEEEEe---------CCeecCCCCCccccccchHHHHHhCCCCEEEEEEeCceeecCCCCceeceEEEEEE
Q psy12561 66 LFKENAKMLIFP---------EGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRFGYGKCFIYL 133 (139)
Q Consensus 66 l~~~g~~v~iFP---------EGtr~~~~~~~~~~k~G~~~la~~~~~pVvPv~i~g~~~~~~~~~~~~~~~v~i~i 133 (139)
|++++ .++||| ||.|. +..--.|--.=....+.+.|.+.+ +...+..|+..+ .+++|.|..
T Consensus 13 ~~~~~-~ivIyP~Y~Ds~sr~eGRRV-pk~V~nP~~~EI~~a~~~Lgl~~~---vE~~K~yPrdw~--~~GRVrV~~ 82 (109)
T 3ktw_A 13 LKEEN-RIVIWPSYFFSPTRSKGRRL-ARIPYKIKTEELVSTLRELGLDPI---VIENKKYPRDRK--INFLIAVKK 82 (109)
T ss_dssp GGGGT-EEEECTHHHHCSSGGGTCCS-SCCSSCCCHHHHHHHHHHTTCCCE---EECSCCCSSCTT--CCCEEEEEC
T ss_pred HHhCC-eEEEeecccCCcchhcCCcc-cccCCCCCHHHHHHHHHHcCCCeE---EccCCCCCcccC--CCCEEEEec
Confidence 55555 889998 57776 333223444556666777888774 443455565432 677777754
No 31
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=20.17 E-value=2.7e+02 Score=20.89 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=38.1
Q ss_pred chhhhhhhhhhcccCCceEEEEchhhhccchhHHHHHhcCeEEEEccCCchhhHHHHHHHHHHHhcCCc--EEEEEeCC
Q psy12561 3 GFFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENA--KMLIFPEG 79 (139)
Q Consensus 3 s~~D~~~l~~~~~~~~~~~~v~~~~~~~~p~~g~~~~~~g~i~v~r~~~~~~~~~~~~~~~~~l~~~g~--~v~iFPEG 79 (139)
|++|.+.+..+-- .+........+. .-.+..+.+...-|.+.- ++-....++..++.+.+.+.|. .++..|+|
T Consensus 252 G~~Dvlsl~q~G~--~n~VA~lGtalt-~~~~~~L~r~~~~vil~~-D~D~AG~~Aa~r~~~~l~~~g~~~~v~~lP~g 326 (407)
T 2au3_A 252 GYFDLLRLFSEGI--RNVVAPLGTALT-QNQANLLSKFTKKVYILY-DGDDAGRKAMKSAIPLLLSAGVEVYPVYLPEG 326 (407)
T ss_dssp SHHHHHHHHHTTC--CSEEEESSSSCC-HHHHHHHHTTCSEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred chHhHHHHHHCCC--CcEEEcCcccCC-HHHHHHHHhcCCeEEEEE-cCCHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 6788877765421 233222222211 112233333335555554 4444567777777777776664 45667876
Done!