RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12561
(139 letters)
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 89.7 bits (223), Expect = 4e-24
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 4 FFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAA 63
LS L R + V+K ELL + G++ L G +FI R + K TL+
Sbjct: 28 PLLLSLLL--PKRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRKNA-KDAANTLEYLV 84
Query: 64 ERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112
E L +E +LIFPEGTR+ +LLPF+KGAFR+A + VPI P+ S
Sbjct: 85 ELL-REGELVLIFPEGTRS-RGGELLPFKKGAFRLAREAGVPIVPVAIS 131
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 88.5 bits (220), Expect = 5e-23
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77
R + V+KKEL + G++ L G + I R +S ++ L EA E L KE ++IFP
Sbjct: 47 RPIRFVAKKELFKIPFLGWLLRLLGAIPIDR-GNGRSAREALREAIEAL-KEGESVVIFP 104
Query: 78 EGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLV 110
EGTR+++ +LLPF+ GAFR+A + VPI P+
Sbjct: 105 EGTRSRD-GELLPFKSGAFRLAKEAGVPIVPVA 136
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 80.5 bits (199), Expect = 1e-20
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 4 FFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAA 63
LS L + V V+KKEL +V G++ L G +FI R S + + L EA
Sbjct: 13 PLVLSALL--PRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDR-SNGRKARAALREAV 69
Query: 64 ERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112
E L KE +LIFPEGTR++ KLLPF+KGA R+A++ VPI P+
Sbjct: 70 ELL-KEGEWLLIFPEGTRSRPG-KLLPFKKGAARLALEAGVPIVPVAIR 116
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 75.1 bits (185), Expect = 2e-18
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 18 RDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFP 77
+ ++KKEL ++ FG + +L G +FI R ++ T +AA + K+ + +FP
Sbjct: 39 PPIVFIAKKELKWIPFFGIMLWLTGAIFIDR--ENIRAIATALKAAIEVLKQGRSIGVFP 96
Query: 78 EGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112
EGTR++ +LPF+KGAF +AIK VPI P+V S
Sbjct: 97 EGTRSRG-RDILPFKKGAFHIAIKAGVPILPVVLS 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 74.9 bits (184), Expect = 3e-17
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 10 LFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE 69
L P V V+KKEL V G++ L G + + R +TL A RL
Sbjct: 81 LSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDR---ENPDDETLRAAVARLKAG 137
Query: 70 NAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112
++IFPEGTR++ +LLPF++GA R+A++ VPI P+
Sbjct: 138 GRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIV 180
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 58.1 bits (140), Expect = 4e-11
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN 82
V KK LL++ FG + +L G + I R +++K+ T+ E K + +FPEGTR+
Sbjct: 93 VGKKSLLWIPFFGQLYWLTGNLLIDRNNRTKA-HGTIAEVVNHFKKRRISIWMFPEGTRS 151
Query: 83 KNPNKLLPFRKGAFRVAIKHQVPIYPLVYS 112
+ LLPF+ GAF AI VPI P+ S
Sbjct: 152 RG-RGLLPFKTGAFHAAIAAGVPIIPVCVS 180
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 57.4 bits (139), Expect = 6e-11
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 30 FVFPF-GFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKL 88
F+ P G+ Y+ G + + R+ +S + L E L K+ A + FPEGTR+K+ KL
Sbjct: 83 FLIPIIGWAMYMTGHIPLKRMD-RRSQLECLKRCME-LLKKGASVFFFPEGTRSKD-GKL 139
Query: 89 LPFRKGAFRVAIKHQVPIYPLV 110
F+KGAF VA K VP+ P+
Sbjct: 140 AAFKKGAFSVAAKTGVPVVPIT 161
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 54.0 bits (130), Expect = 9e-10
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 4 FFFLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAA 63
L L RDV + +ELL +PF G + R +S ++L A
Sbjct: 40 GLILFLLLERGLR-RDVYGLMDEELLERYPFFT---RLGAFSVDR-DSPRSAAKSLKYVA 94
Query: 64 ERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLV--YSPFYFI 117
L K + + IFPEGTR + + L F+ G +A K VPI P+ Y+ F
Sbjct: 95 RLLSKPGSVVWIFPEGTRTRRDKRPLQFKPGVAHLAEKAGVPIVPVALRYTFELFE 150
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 47.6 bits (114), Expect = 2e-07
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 21 AAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAER-LFKENAKMLIFPEG 79
+ V+KKEL + G + G +F+ R S+ K ++ ++E ER +LIFPEG
Sbjct: 48 SIVAKKELGKLPFIGTILRALGCIFVDR-SEPKDRKKVVEEIKERATDPNWPPILIFPEG 106
Query: 80 TRNKNPNKLLPFRKGAFRVAIKHQVPIYPLV 110
T L+ F+KGAF VP+ P+
Sbjct: 107 TTTNG-KALIMFKKGAFEP----GVPVQPVA 132
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 47.6 bits (113), Expect = 3e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 53 KSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLV 110
K Q + +A + + + FPEG NK+P L FR G F IKH++ +Y +V
Sbjct: 198 KEKQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQVLQTFRYGTFATIIKHRMEVYYMV 255
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 46.8 bits (112), Expect = 3e-07
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 23 VSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKM--LIFPEGT 80
V K L + G+ L +F+ R K + ++T+ +RL LIFPEGT
Sbjct: 57 VLKDSLKYPPLGGWGWQLGEFIFLKR--KWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
Query: 81 RNKNPNKLLPFRKGAFRVAIKHQVPIY 107
R K ++ + A K+ +P
Sbjct: 115 R-FTEEK----KERSQEFAEKNGLPPL 136
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 46.4 bits (111), Expect = 3e-07
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 6 FLSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAER 65
F+ GL + + ++ + K L F P G G + + R +Q ++E R
Sbjct: 35 FVLGLLAAFALGLKISFLGKHSL-FKPPLGPFMRWLGGIPVDRSRAGGLVEQVVEEFRRR 93
Query: 66 LFKENAKMLIFPEGTRNKNPNKLLPFRKGAFRVAIKHQVPIYPLVYSPFYFIDMEHKRFG 125
E + I PEGTR+K ++ G + +A VPI ++D + K G
Sbjct: 94 ---EEFVLAIAPEGTRSKVDK----WKTGFYHIARGAGVPILL------VYLDYKRKTVG 140
Query: 126 YGKCF 130
G F
Sbjct: 141 IGPLF 145
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 39.6 bits (93), Expect = 2e-04
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 28 LLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTR-----N 82
F+FP + L + S+ E RL +E +LIFP G R
Sbjct: 56 DHFLFPLPGLRDLLRRLGAVPGSR---------ENCVRLLREGELVLIFPGGAREALKSK 106
Query: 83 KNPNKLL-PFRKGAFRVAIKHQVPIYP 108
+ LL RKG R+A++ PI P
Sbjct: 107 REEYYLLWKKRKGFARLALRAGAPIVP 133
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 34.2 bits (79), Expect = 0.010
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 26 KELLFVFPF-GFVAYLAGVVFISRLSKSKSG------QQTLDEAAERLFKENAKMLIFPE 78
K LF P G++ G + + R G + +A K + IFPE
Sbjct: 59 KADLFKNPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPE 118
Query: 79 GTRNKNPNKLLPFRKGAFRVA 99
G + P LLP + GA R+A
Sbjct: 119 GGSHDRPR-LLPLKAGAARMA 138
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 30.3 bits (69), Expect = 0.36
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 75 IFPEG--TRNKNPNKLLPFRKGAFRVAIKH-QVPIYPLVY 111
IFPEG TRN L F++G F + +K VPI P Y
Sbjct: 516 IFPEGAITRNGQ---LNEFKRG-FELIVKGTDVPIIP-FY 550
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 29.5 bits (67), Expect = 0.40
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 39 YLAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGT-----RNKNPNKLLPFRK 93
V + + +++L EA L K ++IFP G P+
Sbjct: 68 LFIPVDPLEGRAALAKNRESLREALRHL-KNGGALIIFPAGRVSTASPPFGRVSDRPWNP 126
Query: 94 GAFRVAIKHQVPIYPLVYSP------FYFIDMEHKRFGYG 127
R+A K + P+ P VY FY + H
Sbjct: 127 FVARLARKAKAPVVP-VYFSGRNSRLFYLAGLIHPTLRTL 165
>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase.
Length = 341
Score = 29.3 bits (66), Expect = 0.59
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 18 RDVAAVSKKELLFVFPFGFVAYLAGVV 44
R A V+ + L++ P GF+AY GV
Sbjct: 195 RRTALVALRNCLYLAPLGFLAYDWGVT 221
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 29.0 bits (65), Expect = 0.90
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 68 KENAKMLIFPEGTRNKNPNKLLPFRKGAFR-------VAIKH 102
+ +LIFPEGT N ++ F+KGAF +AIK+
Sbjct: 235 PDRNPLLIFPEGTCVNNEYTVM-FKKGAFELGCTVCPIAIKY 275
>gnl|CDD|224389 COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate
transport and metabolism].
Length = 397
Score = 28.9 bits (65), Expect = 0.96
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 17/69 (24%)
Query: 49 LSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRN-----------------KNPNKLLPF 91
L + LD+A R+ + K+ +F + KN LLP
Sbjct: 291 LELVGLSEARLDDAVRRILRVKFKLGLFENPYSSEHRALAREAARESIVLLKNDGGLLPL 350
Query: 92 RKGAFRVAI 100
+K A R+A+
Sbjct: 351 KKSAKRIAV 359
>gnl|CDD|216783 pfam01915, Glyco_hydro_3_C, Glycosyl hydrolase family 3 C-terminal
domain. This domain is involved in catalysis and may be
involved in binding beta-glucan. This domain is found
associated with pfam00933.
Length = 221
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 83 KNPNKLLPFRKGAFRVAI 100
KN LLP K ++A+
Sbjct: 5 KNEGNLLPLSKKKRKIAV 22
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 27.5 bits (62), Expect = 2.0
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 29 LFVFPFGFVAYLAGVVFISR-LSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK 87
L + G + G FI R K + L E + L K + F EGTR++ K
Sbjct: 59 LNIPILGTLLRRLGAFFIRRSFGKDPLYRAVLQEYVQELLKNGQPLEFFIEGTRSRT-GK 117
Query: 88 LLPFRKGAFRVAI 100
LLP + G V +
Sbjct: 118 LLPPKLGLLSVVV 130
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 26.8 bits (60), Expect = 3.1
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 48 RLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRK---GAFRVAIKHQV 104
R S S+ G L E L K+ + I P+G R P K G +A K
Sbjct: 76 RGSSSRGGAAALREMLRAL-KDGYNIAITPDGPRG-------PRYKVKPGVILLARKSGA 127
Query: 105 PIYPLVYSP 113
PI P+ +
Sbjct: 128 PIVPVAIAA 136
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 27.2 bits (61), Expect = 3.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 7 LSGLFHVWPVMRDVAAVSKKELLFVFPFGFVAY-------LAGVVFIS 47
L+GLF W DV A K+ L+V G AY LA +VF S
Sbjct: 43 LAGLFWAWGADEDVIARLVKKTLYV---GVFAYIIGNFNNLARIVFES 87
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 27.1 bits (61), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 43 VVFISRLSKSKSGQQTLDEAAERLFKE--NAKMLI 75
+F++RL K K G L EAA L + N ++L+
Sbjct: 191 FLFVARLLKDK-GIDELLEAARILKAKGPNVRLLL 224
>gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel. The
ClC chloride channels catalyse the selective flow of Cl-
ions across cell membranes, thereby regulating
electrical excitation in skeletal muscle and the flow of
salt and water across epithelial barriers. This domain
is found in the halogen ions (Cl-, Br- and I-) transport
proteins of the ClC family. The ClC channels are found
in all three kingdoms of life and perform a variety of
functions including cellular excitability regulation,
cell volume regulation, membrane potential
stabilization, acidification of intracellular
organelles, signal transduction, transepithelial
transport in animals, and the extreme acid resistance
response in eubacteria. They lack any structural or
sequence similarity to other known ion channels and
exhibit unique properties of ion permeation and gating.
Unlike cation-selective ion channels, which form
oligomers containing a single pore along the axis of
symmetry, the ClC channels form two-pore homodimers with
one pore per subunit without axial symmetry. Although
lacking the typical voltage-sensor found in cation
channels, all studied ClC channels are gated (opened and
closed) by transmembrane voltage. The gating is
conferred by the permeating ion itself, acting as the
gating charge. In addition, eukaryotic and some
prokaryotic ClC channels have two additional C-terminal
CBS (cystathionine beta synthase) domains of putative
regulatory function.
Length = 383
Score = 26.8 bits (60), Expect = 4.1
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 3 GFFFLSGLFHVWPV--MRDVAAVSKKELLFVFPFGFVAYLAGVVFI 46
LF P + +S EL G +A L GV+F+
Sbjct: 179 AALVSRLLFGAEPAFGVPLYDPLSLLELPLYLLLGLLAGLVGVLFV 224
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 27.0 bits (60), Expect = 4.1
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 22 AVSKKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERL--FKENAKMLIFPEG 79
AV KK F+ G+ + + VF+ R S +K + TL +RL F + +F EG
Sbjct: 116 AVMKKSSKFLPVIGWSMWFSEYVFLER-SWAKD-ENTLKSGFQRLKDFPRPFWLALFVEG 173
Query: 80 TRNKNPNKLLPFRKGA 95
TR KLL ++ A
Sbjct: 174 TR-FTQAKLLAAQEYA 188
>gnl|CDD|182837 PRK10918, PRK10918, phosphate ABC transporter periplasmic
substrate-binding protein PstS; Provisional.
Length = 346
Score = 26.7 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 25 KKELLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLD 60
+E LF FP + GVV + KSG+ LD
Sbjct: 90 AQEGLFQFP----TVIGGVVLAVNIPGLKSGELVLD 121
>gnl|CDD|217792 pfam03918, CcmH, Cytochrome C biogenesis protein. Members of this
family include NrfF, CcmH, CycL, Ccl2.
Length = 144
Score = 26.0 bits (58), Expect = 5.2
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 28 LLFVFPFGFVAYLAGVVFISRLSKSKSGQQTLDEAAERLFKE 69
LL++ P + GV+ + ++ L E K
Sbjct: 100 LLWLGPLLLLLLGLGVLVRRIRRRRRAAAPPLSEEERARLKA 141
>gnl|CDD|226392 COG3875, COG3875, Uncharacterized conserved protein [Function
unknown].
Length = 423
Score = 26.0 bits (57), Expect = 8.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 43 VVFISRLSKSK---------SGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNKLLPFRK 93
V+F+S L + + Q E A ++ KE+AK+ + P+G LP RK
Sbjct: 370 VIFVSELGEEEFRFAVFLETVSVQEALEDASKIEKEDAKVHVMPDGG------YTLPVRK 423
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.146 0.453
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,428,465
Number of extensions: 679332
Number of successful extensions: 970
Number of sequences better than 10.0: 1
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 56
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.6 bits)