RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12561
         (139 letters)



>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
           horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
          Length = 416

 Score = 27.8 bits (62), Expect = 1.3
 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 43  VVFISRLSKSKSGQQTLDEAAERLFKE--NAKMLI 75
           +  +SR    K G   + E   ++ ++    ++L+
Sbjct: 234 ITQVSRFDPWK-GIFDVIEIYRKVKEKIPGVQLLL 267


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 1.9
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 44  VFISRLSKS-KSGQQTLDEAAER-LFKENAKMLIFPEGTRNKNPNKLL 89
           V   +L+   +S    L+ A  R +F     + +FP       P  LL
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSA--HIPTILL 392


>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
           domain PILT, protein transport; 1.87A {Aquifex aeolicus}
          Length = 261

 Score = 26.8 bits (60), Expect = 2.5
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 50  SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNK--NPNKLLPFRKGAFRVAIKH 102
            ++++G QT+++   +L+K+    LI  E       +P +L    +G       H
Sbjct: 210 GQAETGMQTMNQTLYKLYKQG---LITLEDAMEASPDPKELERMIRGGRHHHHHH 261


>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2
           hydrolase, family 89 glycoside hydrolase, mucin
           carbohydrate-active enzyme; HET: NDG GAL; 1.90A
           {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A*
           2vca_A
          Length = 914

 Score = 25.8 bits (56), Expect = 6.9
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 49  LSKSKSGQQTLDEAAERLFKENAKMLI 75
           +  +++  +  D+  + LF+ NA+ L+
Sbjct: 780 IEDARTMLKDSDDWTKDLFEFNARALV 806


>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
           pathway, N induced-FIT, hydrolase-hydrolase inhibitor
           complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
           3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
           3pn6_A 3m6r_A 3cpm_A
          Length = 193

 Score = 25.2 bits (56), Expect = 8.5
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 40  LAGVVFISRLSKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNKN 84
           L GV+F  R++       ++ E  E L K+  +    P   R + 
Sbjct: 138 LEGVLFFDRMTDQV--LDSIREELEALEKKYEEKTGLPSPERVEA 180


>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
           hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
           aeolicus} PDB: 2eww_A* 2gsz_A*
          Length = 372

 Score = 25.3 bits (56), Expect = 8.9
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 50  SKSKSGQQTLDEAAERLFKENAKMLIFPEGTRNK--NPNKLLPFRKGA 95
            ++++G QT+++   +L+K+    LI  E       +P +L    +G 
Sbjct: 321 GQAETGMQTMNQTLYKLYKQG---LITLEDAMEASPDPKELERMIRGG 365


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.146    0.453 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,150,330
Number of extensions: 119397
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 18
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.2 bits)