RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12561
         (139 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 45.4 bits (107), Expect = 4e-07
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 24/129 (18%)

Query: 5   FFLSGLFH--VWPVMRDVAAVSKKELLFVFPFGFVAYLAGVVFISR-----------LSK 51
             +S L       +  +   V+   +L        +    ++ +              +K
Sbjct: 145 AIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETK 204

Query: 52  SKSGQQTLDEAAERLFKENAKMLIFPEGTRNKNPNK-----LLPFRKGA----FRVAIKH 102
            K+  ++L E A  L   +  + I P G R++           PF   +     R+    
Sbjct: 205 RKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHS 264

Query: 103 QVP--IYPL 109
            VP  ++PL
Sbjct: 265 DVPGHLFPL 273


>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 169

 Score = 26.7 bits (58), Expect = 0.89
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 39  YLAGVVFISRLSKSKSGQQTLDEAAERLFKENAK 72
           +L G +F+  LS  K  +  + +  E+  ++ A 
Sbjct: 137 HLNGKLFVDYLSTLK--RDRIRKKLEKQHRQQAH 168


>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse
           chestnut (Aesculus hippocastanum) [TaxId: 43364]}
          Length = 50

 Score = 24.5 bits (53), Expect = 1.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 121 HKRFGYGKCFIY 132
           HKR  + KCF Y
Sbjct: 36  HKRENHWKCFCY 47


>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 23.6 bits (51), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 45 FISRLSKSKSGQQTLDEAAERL 66
          F+S L ++K G   L  AA+ L
Sbjct: 14 FVSLLQEAKDGVLDLKLAADTL 35


>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite
           (Plasmodium falciparum) [TaxId: 5833]}
          Length = 165

 Score = 23.7 bits (50), Expect = 9.6
 Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 39  YLAGVVFISRLSKSKSGQQTLDEAAERLFKE 69
           +L G +FI ++++    ++ +      L ++
Sbjct: 137 HLNGTLFIDKMTQVD--KKKVRPKLNELIRD 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.146    0.453 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,101
Number of extensions: 22490
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 10
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.4 bits)