RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12562
(599 letters)
>gnl|CDD|219990 pfam08726, efhand_Ca_insen, Ca2+ insensitive EF hand. EF hands are
helix-loop-helix binding motifs involved in the
regulation of many cellular processes. EF hands usually
bind to Ca2+ ions which causes a major conformational
change that allows the protein to interact with its
designated targets. This domain corresponds to an EF
hand which has partially or entirely lost its
calcium-binding properties. The calcium insensitive EF
hand is still able to mediate protein-protein
recognition.
Length = 69
Score = 115 bits (291), Expect = 2e-31
Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 529 DTDTAEQVIDSFRILAGDKPYILPDELRRELPPDQAEYCIQRMPPYKGP--NAIPGALDY 586
DTDTAEQV SFR LA KPY+ ++LRR L P+QAEYCI RMPPY GP ++PGA DY
Sbjct: 1 DTDTAEQVEQSFRALAEGKPYVTEEDLRRALTPEQAEYCIARMPPYSGPDGRSVPGAYDY 60
Query: 587 QSFSTALYG 595
SF AL+G
Sbjct: 61 ISFMEALFG 69
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 116 bits (293), Expect = 6e-30
Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 102 LAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQI 161
Q+F AD E W KEE+L S+D+ L ++AL KKHEA E++LAAH++RVE +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEAL 59
Query: 162 AAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKI-DILHLE 220
+ ++L + D+ + R + + +W+ L L ++RR L+EA + + D LE
Sbjct: 60 NELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLE 119
Query: 221 FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVR 280
WL+ L + +E ++ L+ H + + L + S+ L
Sbjct: 120 ---------QWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAE 170
Query: 281 EVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAEL 329
E+ + +L ++W ++ +L +R L+ L
Sbjct: 171 ELLEEGHPD------ADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 71.7 bits (176), Expect = 3e-14
Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 17/225 (7%)
Query: 220 EFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLV 279
+F + A WL E L +E ++ L+ H +A L ++ ++ L
Sbjct: 4 QFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELG 63
Query: 280 REVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLR 339
++ G + +L ++W ++R+L +R L+ L Q
Sbjct: 64 EQLIEE-------GHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQ------- 109
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMG-LQGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
QF A+ + W+E + A+ S +G S+E+ L + KE E+ + A++P ++ L ++
Sbjct: 110 -QFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNEL 168
Query: 399 HQAVQEGMIFEN-RYTQYTMETLRVGWEQLLTSINRNINEVENQI 442
+ + E + + +E L WE+LL ++E +
Sbjct: 169 AEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEAL 213
Score = 65.5 bits (160), Expect = 3e-12
Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 20/210 (9%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRR--KHKPPRVEQKAKLETNFNTLQTKLRLSNRP 58
L S + L V+ L+++ RVE N L +L P
Sbjct: 20 EELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEA-------LNELGEQLIEEGHP 72
Query: 59 AYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTR 118
+I + L + E RLE L Q F+ D+ E W
Sbjct: 73 D--------AEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDL-EQWLE 123
Query: 119 GKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQEL-NTLEYHDSV 177
KE L S D + L ++ L KKH+ E +L AH+ R++ + +A+EL
Sbjct: 124 EKEAALASEDLGK-DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADE 182
Query: 178 SVNARCQRICDQWDHLGALTQQRRHALDEA 207
+ + + + ++W+ L L ++R+ L+EA
Sbjct: 183 EIEEKLEELNERWEELLELAEERQKKLEEA 212
Score = 37.0 bits (86), Expect = 0.015
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMG-LQGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
+QF A+++ W+ + + ++S G S+E L + + E + A++ +E L ++
Sbjct: 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNEL 62
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLL 428
+ + E + Q +E L WE+L
Sbjct: 63 GEQLIEEGHPDAEEIQERLEELNQRWEELR 92
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat. Spectrin repeat-domains are
found in several proteins involved in cytoskeletal
structure. These include spectrin, alpha-actinin and
dystrophin. The sequence repeat used in this family is
taken from the structural repeat in reference. The
spectrin domain- repeat forms a three helix bundle. The
second helix is interrupted by proline in some
sequences. The repeats are defined by a characteristic
tryptophan (W) residue at position 17 in helix A and a
leucine (L) at 2 residues from the carboxyl end of helix
C. Although the domain occurs in ultiple repeats along
sequences, the domains are actually stable on their own
- ie they act, biophysically, like domains rather than
repeats that along function when aggregated.
Length = 105
Score = 90.8 bits (226), Expect = 5e-22
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 101 HLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQ 160
L Q+F AD E W KE +L S D+ + L ++AL KKH+A E++LAAHQDRVE
Sbjct: 1 LLLQQFFRDADDLESWIEEKEALLSSEDYGK-DLESVQALLKKHKALEAELAAHQDRVEA 59
Query: 161 IAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDE 206
+ +A++L ++ S + R + + ++W+ L L +R+ L+E
Sbjct: 60 LNELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 51.2 bits (123), Expect = 4e-08
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 338 LRRQFAEKANQVGPWIERQMDAVTSIGMGLQ-GSLEDQLHRLKEYEQGVYAYKPHIEELE 396
L +QF A+ + WIE + ++S G S++ L + K E + A++ +E L
Sbjct: 2 LLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALN 61
Query: 397 KIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVEN 440
++ + + + + Q +E L WEQLL ++E
Sbjct: 62 ELAEKLIAEGHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 49.2 bits (118), Expect = 2e-07
Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 217 LHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIV 276
L +F + A +W++ L +E +Q L+ H +A L ++
Sbjct: 2 LLQQFFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALN 61
Query: 277 NLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQA 327
L ++ + G + +L ++W + +L +R L+
Sbjct: 62 ELAEKLIAE-------GHYASEEIQERLEELNERWEQLLELAAERKQKLEE 105
Score = 32.7 bits (75), Expect = 0.13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
L S L VQ L++ ++ + ++E N L KL ++
Sbjct: 21 EALLSSEDYGKDLESVQALLKK---HKALEAELAA-HQDRVE-ALNELAEKL-IAEGHYA 74
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLL 90
+ + ++ W+ L ++ L
Sbjct: 75 SEEIQERLEELNERWEQLLELAAERKQKLE 104
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 77.8 bits (192), Expect = 2e-17
Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 104 QKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAA 163
Q+F AD E W KE++L S D L ++AL KKHEAFE++L AH++RVE +
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDL-GKDLESVEALLKKHEAFEAELEAHEERVEALNE 59
Query: 164 IAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALD 205
+ ++L + D+ + R + + ++W+ L L ++RR L+
Sbjct: 60 LGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 40.8 bits (96), Expect = 2e-04
Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 220 EFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLV 279
+F + A WL+ + L + +E ++ L+ H F+A L ++ ++ L
Sbjct: 2 QFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELG 61
Query: 280 REVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQ 326
++ G + +L ++W ++++L +R L+
Sbjct: 62 EQLIEE-------GHPDAEEIEERLEELNERWEELKELAEERRQKLE 101
Score = 34.6 bits (80), Expect = 0.020
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
+QF A+++ W+E + + S +G S+E L + + +E + A++ +E L ++
Sbjct: 1 QQFLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNEL 60
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLL 428
+ + E + + +E L WE+L
Sbjct: 61 GEQLIEEGHPDAEEIEERLEELNERWEELK 90
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 62.9 bits (153), Expect = 8e-12
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+T+EQ+ EF+ +F+ FDK+ G + +E + + SLG + E + Q ++ VD +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-----PTEAELQDMINEVDAD 59
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGD-KPYILPDELR 556
G + F FL M R+ DTD+ E++ ++F++ D +I ELR
Sbjct: 60 GNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELR 107
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 61.2 bits (149), Expect = 5e-11
Identities = 32/99 (32%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G+T++Q E R +F+ FD + +G + P+E K + SLG+ K+ + ++++A VD
Sbjct: 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKE-----EIKQMIADVDK 64
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK 547
+ +G + F+ FLD MT++ + D E+++ +FR+ DK
Sbjct: 65 DGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDK 103
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 61.2 bits (149), Expect = 5e-11
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 19/158 (12%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+T+EQ+ E + +F FD++ G + E L SLG++ + EI ++ +D
Sbjct: 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEA---EI--NKLFEEIDAG 68
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR-------ELPP 561
V F FL M+ + D E++ ++F++ D YI ELRR L
Sbjct: 69 -NETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD 127
Query: 562 DQAEYCIQRMPPYKGPNAIPGALDYQSFSTALYGESDL 599
++ E ++ G +DY+ F + +
Sbjct: 128 EEVEKLLKEYDEDGD-----GEIDYEEFKKLIKDSPTI 160
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 56.0 bits (136), Expect = 3e-10
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E R +F FDK+ G ++ +E K+ L SLG + ++ + ++ VD + G + F
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEE-----EIDEMIREVDKDGDGKIDF 55
Query: 517 DAFLDFMT 524
+ FL+ M
Sbjct: 56 EEFLELMA 63
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 50.3 bits (120), Expect = 2e-06
Identities = 59/301 (19%), Positives = 96/301 (31%), Gaps = 20/301 (6%)
Query: 260 QFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVP 319
Q A A E + +L ++ ++Y L P DL
Sbjct: 301 QLNALCSRAPLETTDLHSLAGQILQNAEKYDCRKYL--PPAGNPKLDLAFVAHLFNTHPG 358
Query: 320 QRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLK 379
Q L+ E + + +F + W+ V+ L G L DQL L+
Sbjct: 359 QE--PLEEEEKPEIEEFDAEGEFEARVFTF--WLNSLD--VSPEITNLFGDLRDQLILLQ 412
Query: 380 EYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVE 439
+ + P + + + G I ENR+ + E V I +E
Sbjct: 413 ALSKKL---MPMTVTHKLVKKQPASG-IEENRFKAFENENYAVDLGITEGFSLVGIKGLE 468
Query: 440 NQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF 499
R + + L A FNH K L+ + + L SLG K+
Sbjct: 469 ILDGIRLKLTLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEG----- 523
Query: 500 QRILAVVDP-NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRRE 558
I + DP S V + L + E D D + F +A + + ++ R
Sbjct: 524 --IRSFGDPAGSVSGVFYLDVLKGIHSELVDYDLVTRGFTEFDDIADARSLAISSKILRS 581
Query: 559 L 559
L
Sbjct: 582 L 582
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 38.9 bits (91), Expect = 3e-04
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 465 FDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFM 523
DK+ G + EE + L +LG + + E+ + +D + G + F+ FL+ M
Sbjct: 3 LDKDGDGYIDVEELRKLLKALGLKLTDEEVEEL-IEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 37.1 bits (87), Expect = 0.001
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 470 TGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
G + EE K L LG S+ ++ + + D + G + F+ F + R
Sbjct: 2 KGLITREELKRALALLGISLSEE-----EVDILFREFDTDGDGKISFEEFCVLLQRL 53
Score = 26.7 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 456 NEFRASFNHFDKNRTGRLAPEEFKSCLVSL 485
E F FD + G+++ EEF L L
Sbjct: 24 EEVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLG 486
E R +F FDK+ G ++ EE + L SLG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 37.2 bits (87), Expect = 0.022
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 133 KLNELKALKKKHEAFESDLAAHQDRV----EQIAAIAQELNTLEYHDSVSVNARCQRICD 188
+L LK+L +K+ DL + D++ Q+ + L LE +++
Sbjct: 305 RLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALE--------KEVKKLKA 356
Query: 189 QWDHLG-ALTQQRRHALDEAEK-ILEKIDILHLEFAK 223
+ AL+ R+ A E EK + ++ L +E A+
Sbjct: 357 ELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKAR 393
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 32.4 bits (75), Expect = 0.025
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSL 485
E + +F FDK+ G++ EEFK L +L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 28.5 bits (65), Expect = 0.71
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 498 DFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+ + + D + G + F+ F D +
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 32.0 bits (74), Expect = 0.039
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSL 485
E + +F FDK+ G+++ EEFK L L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 26.3 bits (59), Expect = 3.8
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 498 DFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+ + D + G + F+ F + + +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKK 28
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.5 bits (82), Expect = 0.085
Identities = 46/264 (17%), Positives = 99/264 (37%), Gaps = 22/264 (8%)
Query: 36 EQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMR 95
E + + L+ +L E ++ K E E+ EE L E+
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALE-EELKELKKLEEIQEEQEEEELEQEIEA 236
Query: 96 LE-RLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAH 154
LE RL L ++ + ++ + L++ R+ +L EL+ L ++ E L
Sbjct: 237 LEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEEL 296
Query: 155 QDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKI 214
+ +E++ + L L + + + + L +L ++ ++ EK+ ++
Sbjct: 297 EREIEELEEELEGLRALL-----------EELEELLEKLKSLEERLEKLEEKLEKLESEL 345
Query: 215 DILHLEF-------AKRAAPFNNWLDGTREDLVDMFIVHT--MEEIQGLIDAHSQFKATL 265
+ L E +R L+ ++L E IQ L + ++ A L
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405
Query: 266 GEADKEYNSIVNLVREVESTVQQY 289
E +E + + E+E +++
Sbjct: 406 EEIQEELEELEKELEELERELEEL 429
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 35.0 bits (81), Expect = 0.090
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 125 QSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQ 184
+ C EL K E + L +V+++ + +EL LE + +
Sbjct: 194 LEDELEDCDPTELDRAK---EKLKKLLQEIMIKVKKLEELEEELQELE-SKIEDLTNKKS 249
Query: 185 RICDQWDHL-GALTQQRRHALDEAEKILEKIDIL 217
+ + L Q R E EK+ E++ +L
Sbjct: 250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.4 bits (82), Expect = 0.093
Identities = 59/320 (18%), Positives = 123/320 (38%), Gaps = 23/320 (7%)
Query: 97 ERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQD 156
E LE L ++ K + E+ T +E + KL EL+ + E ++ Q
Sbjct: 239 EELEELQEELKEAEEELEELTAELQE-------LEEKLEELR---LEVSELEEEIEELQK 288
Query: 157 RVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDI 216
+ A+A E++ LE + R + Q + L A ++ LDE + L +++
Sbjct: 289 ELY---ALANEISRLE-QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
Query: 217 LHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLID-AHSQFKATLGEADKEYNSI 275
E + L+ +L ++ +EE++ ++ S+ + N I
Sbjct: 345 KLEELKEELESLEAELEELEAELEEL--ESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
Query: 276 VNLVREVEST-VQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQN 334
L +E ++ ++ +E L +L + ++ +L + + + R ++
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
Query: 335 NETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHIEE 394
E LR + E + ER++ + + SLE L+ + +GV A +
Sbjct: 463 LEELREELEEAEQALDA-AERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQSG 517
Query: 395 LEKIHQAVQEGMIFENRYTQ 414
L I + E + + Y
Sbjct: 518 LSGILGVLSELISVDEGYEA 537
Score = 32.7 bits (75), Expect = 0.69
Identities = 46/302 (15%), Positives = 109/302 (36%), Gaps = 41/302 (13%)
Query: 6 SRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEG 65
S +T++S+ ++++EE + + E+ A+LE L+ +L
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELE----EKIAELEKALAELRKELEELE--------- 711
Query: 66 KMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQ 125
+ + + + L + + L +E+LE A + ++ T + E+ +
Sbjct: 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI------AQLSKELTELEAEIEE 765
Query: 126 SSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNT------LEYHDSVSV 179
+ + EL + + E E+ + ++ ++ + EL E +
Sbjct: 766 LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
Query: 180 NARCQ-RICDQWDHLGALTQQRR----------HALDEAEKILEKIDILHLEFAKRAAPF 228
+ RI L L +Q ++E E+++E+++ A
Sbjct: 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
Query: 229 NNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQ 288
L R +L ++ EE++ L S+ + L E ++ + + +E +
Sbjct: 886 EEALALLRSELEEL-----SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
Query: 289 YQ 290
Q
Sbjct: 941 LQ 942
Score = 30.8 bits (70), Expect = 2.6
Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 31/159 (19%)
Query: 141 KKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLG--ALTQ 198
+++ E E L ++ ++++ I EL Q L A
Sbjct: 172 ERRKET-ERKLERTRENLDRLEDILNELER------------------QLKSLERQAEKA 212
Query: 199 QRRHALDEAEKILEK-IDILHLEFAKRAAPFNNWLDGTREDLVDMF------IVHTMEEI 251
+R L + LE + +L LE + L ++ + + E++
Sbjct: 213 ERYKELKAELRELELALLVLRLEELREELEE---LQEELKEAEEELEELTAELQELEEKL 269
Query: 252 QGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQ 290
+ L S+ + + E KE ++ N + +E Q +
Sbjct: 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 33.7 bits (77), Expect = 0.31
Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 18/198 (9%)
Query: 200 RRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHS 259
H ++ ++ EKI + +E +D DL EEI I+ ++
Sbjct: 471 INHYNEKKSRLEEKIREIEIEVKD--------IDEKIVDLKKRKEYLESEEINKSINEYN 522
Query: 260 QFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVP 319
+ ++ + + I N +++ ++ ++N Y +L DL K T +
Sbjct: 523 KIESARADLEDIKIKI-NELKDKHDKYEE------IKNRYKSLKLEDLDSKRTSWLNALA 575
Query: 320 QRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLK 379
R + N + E Q IE S +E++ + L
Sbjct: 576 VISLIDIETNRSRSNEIKKQLNDLESRLQE---IEIGFPDDKSYIDKSIREIENEANNLN 632
Query: 380 EYEQGVYAYKPHIEELEK 397
+ K IE+L
Sbjct: 633 NKYNEIQENKILIEKLRG 650
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.2 bits (67), Expect = 0.36
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 458 FRASFNHFDKNRTGRLAPEEFKSCL 482
+ F FD N G+++ EE K L
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|212167 cd11653, rap1_RCT, C-terminal domain of RAP1 recruits proteins to
telomeres. The RAP1 (repressor activator protein 1)
C-terminal domain (RCT) mediates interactions with other
proteins such as TRF2 (human), Rif1, Rif2, Sir3, Sir4
(Saccharomyces cerevisiae), and Taz1
(Schizosaccharomyces pombe) at telomeres and other loci.
RAP1, identified in budding yeast as repressor/activator
protein 1, is a well-conserved telomere binding protein,
also found in fission yeast and mammals. In
Saccharomyces cerevisiae, RAP1 directly binds DNA and is
involved in transcriptional activation, gene silencing,
as well as binding at numerous sites at each telemore,
where it functions in telomere length regulation,
telomeric position effect gene silencing and telomere
end protection. Human RAP1 apparently does not bind
telomeric DNA directly, but binds telomere repeat
binding factor 2 (TRF2) via the RCT. RAP1 might act by
suppressing nonhomologous end-joining. Yeast RAP1 has
two myb-type DNA binding modules, and an RCT domain that
recruits Sir proteins 3 and 4 (Sir3, Sir4) for gene
silencing, and Rif1 and Rif2 for telomere length
maintenance. Schizosaccharomyces pombe RAP1 (spRap1),
like human RAP1, lacks direct DNA-binding activity and
is localized to telomeres via Taz1, an ortholog of TRF1
and TRF2. The S. pompe RCT resembles the first 3-helix
bundle of the yeast and human RCT forms, but is not
included in this larger model.
Length = 100
Score = 31.1 bits (71), Expect = 0.39
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 96 LERLEHLAQK-FKHKADIHED----WTRGKEEMLQSSDFRQCKLNELKALKKKH--EAFE 148
L LA ++ I D WTR +E LQS D R ++ L KKH E
Sbjct: 38 LSMDPRLALNVLRYLVGIPPDMPGIWTREDDECLQSDDPR-----TIERLIKKHGAENVA 92
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 32.4 bits (74), Expect = 0.87
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 550 ILPDELRREL--PPDQAEYCIQRMPPYKGP 577
LP LRR PD A+ C+ R+PP +GP
Sbjct: 895 SLPKALRRNFVPAPDFAKACLARLPPNQGP 924
>gnl|CDD|218340 pfam04943, Pox_F11, Poxvirus F11 protein. The protein F11 is an
early virus protein.
Length = 366
Score = 31.7 bits (72), Expect = 1.1
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 19/154 (12%)
Query: 98 RLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDR 157
E A K + + +D R + L+ R C EL + D+ A +
Sbjct: 199 AFEIAANKRRDAIKLVDDIIRNRVL-LEKLYSRLCMTRELNHMY-------DDIYASHNN 250
Query: 158 VEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEA-----EKILE 212
++ I + + ++ A + A R L A ++L
Sbjct: 251 RTLVSDIMKRSEDILTKGINNMFAMSKAASA------AKNTIRERLLKAAIEKDVNELLS 304
Query: 213 KIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVH 246
I L E+ K A+ ++ LD + + +D +I+
Sbjct: 305 SIPELWDEYKKLASDVSSLLDYGQNEYIDTYILG 338
>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional.
Length = 596
Score = 31.6 bits (71), Expect = 1.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 254 LIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGL-ENPYTALTANDLTKKWT 312
L++ FKA K+Y+ + + ++ VQ YQ+PGG+ N Y L + K
Sbjct: 263 LLEIDDYFKAV----RKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMD 318
Query: 313 DVRKLVPQ 320
V K +P+
Sbjct: 319 AVHKEIPR 326
>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP. Members of this
nearly universal bacterial protein family are regulated
intramembrane proteolysis (RIP) proteases. Older and
synonymous gene symbols include yaeL in E. coli, mmpA in
Caulobacter crescentus, etc. This family includes a
region that hits the PDZ domain, found in a number of
proteins targeted to the membrane by binding to a
peptide ligand. The N-terminal region of this family
contains a perfectly conserved motif HEXGH as found in a
number of metalloproteinases, where the Glu is the
active site and the His residues coordinate the metal
cation [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 419
Score = 30.9 bits (70), Expect = 1.9
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 261 FKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDL-TKKWTDVRKLVP 319
F + +G E ++ L+ + S + I G E L+ N + DVR+ +
Sbjct: 116 FISLIGVPGYEVGPVIELL-DKNSIALEAGIEPGDE----ILSVNGNKIPGFKDVRQQIA 170
Query: 320 QRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTS 362
E+ ++ N T GP IE + VT
Sbjct: 171 DIAGEPMVEILAERENWTFEVMKELI--PRGPKIEPVLSDVTP 211
>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
Length = 448
Score = 30.4 bits (69), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 279 VREVESTVQQYQIPGG-LENPYTALTANDLTKKWTDVRKLVPQ 320
V++VE YQ+PGG L N + L K+ +V K VP+
Sbjct: 287 VKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPK 329
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.8 bits (70), Expect = 2.8
Identities = 31/171 (18%), Positives = 66/171 (38%), Gaps = 18/171 (10%)
Query: 13 LSGVQKKLEEYRTYR---RKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVS 69
LS +++++E ++ E KLE N L+ +L + +P +S
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS----HSRIPEIQAELS 801
Query: 70 DIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDF 129
+ +E + E+ L + E LE ++ + + D + + + +
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLE---KEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 130 RQCKLNELKALKKKHEAFE-------SDLAAHQDRVE-QIAAIAQELNTLE 172
K EL+ ++ EA DL +D +E Q+ + +++ LE
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 30.2 bits (68), Expect = 2.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 323 TTLQAELRKQQNN-ETLRRQFAEKANQVGPWIER------QMDAVTSIGMGLQGSLEDQ 374
T LQ +L Q++ ++LR Q E Q+ +ER Q+D+++S G Q + DQ
Sbjct: 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQ 115
>gnl|CDD|214397 CHL00207, rpoB, RNA polymerase beta subunit; Provisional.
Length = 1077
Score = 30.4 bits (69), Expect = 3.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 421 RVGWEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKN 468
R+ +E L TSI+ E+E + S+ IT+ N S + D+N
Sbjct: 671 RLVYEDLFTSIHIEKYEIELRQTKLGSEEITRNIPNVSEYSLKNLDEN 718
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.3 bits (69), Expect = 3.7
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 250 EIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQY--------QIPGGLENPYTA 301
D +F+A EA +E S+ + ++ Q+ +I G +
Sbjct: 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAW 495
Query: 302 LTANDLTKKWTDVRKLVPQRD------TTLQAELRKQQNNETLRRQFAEKANQ 348
A +L ++ + R L Q + L+ LR+QQ E L +F ++ +
Sbjct: 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK 548
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 30.2 bits (68), Expect = 3.7
Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 51/223 (22%)
Query: 154 HQDRVEQIAAIAQELNTLEYHDSVSVNA-------------RCQRICDQWDHLGALTQQR 200
+I + L TL D + + +C + Q L
Sbjct: 684 LTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLE 743
Query: 201 RHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQ 260
L +A+ + A +A+ F++ L+D + +E Q
Sbjct: 744 AQRLQKAQA--------QFDTALQASVFDD-QQAFLAALLDEETLTQLE----------Q 784
Query: 261 FKATLGEADKEYNSIVNLVREVESTVQ--QYQIPGGLENPYTALT-ANDLTKKWTDVRKL 317
K L + + LV + + Q P GL+ T +L + +R+
Sbjct: 785 LKQNL---ENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRE- 840
Query: 318 VPQRDTTLQAELRKQ--------QNNETLRRQFAEKANQVGPW 352
+TT Q E+R+Q Q + L +Q A+ QV W
Sbjct: 841 ----NTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVEDW 879
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.1 bits (68), Expect = 3.9
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 95 RLERLEHLAQKFKHKADIHEDWTRGKEE---MLQSSDFRQCKLNELKALKKKHEA-FESD 150
R ER++ L K A + + + E +L +Q KL +L +KK A S+
Sbjct: 159 RAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE 218
Query: 151 LAAHQDRVEQIAAIAQEL 168
L+A Q ++E++ A L
Sbjct: 219 LSADQKKLEELRANESRL 236
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 29.8 bits (67), Expect = 4.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 461 SFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF-QRILAVVDPNSTGYVHFDAF 519
SF+ D + + ++ F SC SI + E F +RILA+VD + G + F F
Sbjct: 148 SFDLLDPSSSNKVVGSIFVSC------SIEDPVETERSFARRILAIVDYDEDGQLSFSEF 201
Query: 520 LDFM 523
D +
Sbjct: 202 SDLI 205
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 5.1
Identities = 46/309 (14%), Positives = 110/309 (35%), Gaps = 32/309 (10%)
Query: 133 KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDH 192
ELK+LK + + E L + ++E++ +EL + R+ + +
Sbjct: 686 LEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE 745
Query: 193 LGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQ 252
L L ++ + E++ E+++ L AK EEI+
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLK-----------------------EEIE 782
Query: 253 GLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWT 312
L + + L E ++E + +E ++ + ++ +
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR-------ERLEQEIEELEE 835
Query: 313 DVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLE 372
++ +L + D + ++ E L+ + E + +E ++ + L+ L
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELR 894
Query: 373 DQLHRLKEYEQGVYAYKPHIEELEKIHQAVQ-EGMIFENRYTQYTMETLRVGWEQLLTSI 431
+ L E ++ + + +EELE + ++ E E + +TL E+ + +
Sbjct: 895 ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954
Query: 432 NRNINEVEN 440
I +
Sbjct: 955 EEEIEALGP 963
>gnl|CDD|149836 pfam08898, DUF1843, Domain of unknown function (DUF1843). This
domain is found at the C-terminus of a family of
proteins that are functionally uncharacterized. The
presumed domain is about 60 amino acid residues in
length and is found independently in some proteins.
Length = 53
Score = 26.5 bits (59), Expect = 6.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 192 HLGALTQQRRHALDEAEKILEKIDILHLEFAKRAA 226
+ AL Q L +A ++ ++ L E A+
Sbjct: 18 QMKALLAQAEQQLAQAGELAAALEKLKAEIARLER 52
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 28.8 bits (64), Expect = 7.1
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 31 KPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVS 69
+PP+++ K K + F+ K+ L+ P PT ++++
Sbjct: 227 QPPKLKDKTKWSSTFHNF-VKISLTKNPKKRPTAERLLT 264
>gnl|CDD|239013 cd02058, PAI-2, Plasminogen Activator Inhibitor-2 (PAI-2). PAI-2 is
a serine protease inhibitor that belongs to the
ov-serpin branch of the serpin superfamily. It is is an
effective inhibitor of urinary plasminogen activator
(urokinase or uPA) and is involved in cell
differentiation, tissue growth and regeneration.
Length = 380
Score = 28.9 bits (65), Expect = 7.6
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 70 DIANAWKGLETSEKS-----FEEWLLSEMMRLERLEHLAQKFK 107
+I + GLE EK EW EMM +E KFK
Sbjct: 236 EIEDVTTGLEKLEKELTYEKLNEWTSPEMMEEYEVEVYLPKFK 278
>gnl|CDD|131935 TIGR02889, spore_YpeB, germination protein YpeB. Members of this
family are YpeB, a protein usually encoded with the
putative spore-cortex-lytic enzyme SleB and required,
together with SleB, for normal germination. This family
is retricted to endospore-forming species in the
Firmicutes lineage of bacteria, and found in all such
species to date except Clostridium perfringens. The
matching phenotypes of mutants in SleB (called a lytic
transglycosylase) and YpeB suggests that YpeB is
necessary to allow SleB to function [Cellular processes,
Sporulation and germination].
Length = 435
Score = 28.9 bits (65), Expect = 7.7
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 12 SLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSN------RPAYMPTEG 65
G +EY+T + Q KLE +Q + R Y E
Sbjct: 116 DAEGKSLSDKEYKTLTTLY-----NQAVKLENQLRKVQNIVMQGGVRWGEIRKLYSGDEA 170
Query: 66 KMVSDIANAWKGLETSEKSFEE 87
+M I N +K +E + F
Sbjct: 171 QMPEAILNDFKDVEKNVTQFPT 192
>gnl|CDD|220400 pfam09785, Prp31_C, Prp31 C terminal domain. This is the C
terminal domain of the pre-mRNA processing factor Prp31.
Prp31 is required for U4/U6.U5 tri-snRNP formation. In
humans this protein has been linked to autosomal
dominant retinitis pigmentosa.
Length = 124
Score = 27.7 bits (62), Expect = 9.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 328 ELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGS 370
ELRK QN R +F ++ +VG D +G+G+ GS
Sbjct: 35 ELRKAQN----RMEFGKEEEEVG------YDFDEGVGLGMLGS 67
>gnl|CDD|182409 PRK10361, PRK10361, DNA recombination protein RmuC; Provisional.
Length = 475
Score = 28.8 bits (64), Expect = 10.0
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 88 WLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFR-QCKL--NELKALKKKH 144
WL + + + A++ + ++ + + K+++ QS +R +C+L NE+++L+ +
Sbjct: 20 WLFASY---QHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSIN 76
Query: 145 EAFESDLAAHQDRVEQIAAIAQE 167
+ E+DL R+E A +
Sbjct: 77 TSLEADLREVTTRMEAAQQHADD 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,707,011
Number of extensions: 3024821
Number of successful extensions: 3733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3662
Number of HSP's successfully gapped: 127
Length of query: 599
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 497
Effective length of database: 6,413,494
Effective search space: 3187506518
Effective search space used: 3187506518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)