RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12562
(599 letters)
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 534 bits (1376), Expect = 0.0
Identities = 382/599 (63%), Positives = 480/599 (80%), Gaps = 5/599 (0%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+PWL++R +N++ +Q+KLE++R YRR HKPP+V++K +LE NFNTLQTKLRLSNRPA+
Sbjct: 270 IPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAF 329
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
MP+EGKMVSDI NAW GLE +EK +EEWLL+E+ RLERL+HLA+KF+ KA IHE WT GK
Sbjct: 330 MPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGK 389
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
E MLQ D+ L+E+KAL KKHEAFESDLAAHQDRVEQIAAIAQELN L+Y+DS SVN
Sbjct: 390 EAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVN 449
Query: 181 ARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLV 240
ARCQ+ICDQWD+LGALTQ+RR AL+ EK+LE ID L+LE+AKRAAPFNNW++G EDL
Sbjct: 450 ARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQ 509
Query: 241 DMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYT 300
D FIVHT+EEIQGL AH QFKATL +ADKE +I+ + EV VQ Y + NPYT
Sbjct: 510 DTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYT 569
Query: 301 ALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAV 360
+T ++ KW VR+LVP+RD L E +QQ NE LR+QF +AN +GPWI+ +M+ +
Sbjct: 570 TITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEI 629
Query: 361 TSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETL 420
I + + G+LEDQL+ L++YE+ + YKP I++LE HQ +QE +IF+N++T YTME +
Sbjct: 630 GRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHI 689
Query: 421 RVGWEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKS 480
RVGWEQLLT+I R INEVENQILTRD+KGI+QEQ+NEFRASFNHFD+ +TG + E+F++
Sbjct: 690 RVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRA 749
Query: 481 CLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSF 540
CL+S+GY++ GE +F RI+++VDPN G V F AF+DFM+RE+ DTDTA+QV+ SF
Sbjct: 750 CLISMGYNM-----GEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASF 804
Query: 541 RILAGDKPYILPDELRRELPPDQAEYCIQRMPPYKGPNAIPGALDYQSFSTALYGESDL 599
+ILAGDK YI DELRRELPPDQAEYCI RM PY G +A+PGALDY SFSTALYGESDL
Sbjct: 805 KILAGDKNYITVDELRRELPPDQAEYCIARMAPYNGRDAVPGALDYMSFSTALYGESDL 863
Score = 87.3 bits (215), Expect = 5e-18
Identities = 45/356 (12%), Positives = 120/356 (33%), Gaps = 9/356 (2%)
Query: 133 KLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDH 192
KL + L + AF D+A + ++ + T D ++ +
Sbjct: 171 KLRKDDPLTNLNTAF--DVAEKYLDIPKMLDAEDIVGTARP-DEKAIMTYVSSFYHAFSG 227
Query: 193 LGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQ 252
E ++ ++ K A+ W+ T L + +TM+ +Q
Sbjct: 228 AQKAETAANRICKVLAVNQENEQLME-DYEKLASDLLEWIRRTIPWLENRAPENTMQAMQ 286
Query: 253 GLIDAHSQFKATLGEA-DKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKW 311
++ ++ +E + +++ ++ P P +D+ W
Sbjct: 287 QKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRP--AFMPSEGKMVSDINNAW 344
Query: 312 TDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTS--IGMGLQG 369
+ + + L E+R+ + + L +F +KA+ W + + +
Sbjct: 345 GGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLS 404
Query: 370 SLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLT 429
++ L + + +E + A++ +E++ I Q + E +++ + + W+ L
Sbjct: 405 EIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGA 464
Query: 430 SINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSL 485
+ +E ++ + + A FN++ + L + +
Sbjct: 465 LTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEI 520
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 330 bits (846), Expect = e-107
Identities = 273/446 (61%), Positives = 349/446 (78%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+PWL++R + ++ +QKKLE++R YRRKHKPP+V++K +LE NFNTLQTKLR+SNRPA+
Sbjct: 31 IPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAF 90
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
MP+EGKMVSDIA AW+ LE +EK +EEWLL+E+ RLERLEHLA+KF+ KA HE W GK
Sbjct: 91 MPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGK 150
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
E++L D+ L E++AL +KHEAFESDLAAHQDRVEQIAAIAQELN L+YHD+V+VN
Sbjct: 151 EQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVN 210
Query: 181 ARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLV 240
RCQ+ICDQWD LG LTQ+RR AL+ EK+LE ID LHLEFAKRAAPFNNW++G EDL
Sbjct: 211 DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ 270
Query: 241 DMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYT 300
DMFIVH++EEIQ LI AH QFKATL EAD E SI+ + EVE +Q Y I NPY+
Sbjct: 271 DMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYS 330
Query: 301 ALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAV 360
+T ++L KW V++LVP RD +LQ EL +Q NE LRRQFA +AN +GPWI+ +M+ +
Sbjct: 331 TVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEI 390
Query: 361 TSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETL 420
+ + G+LEDQ+++LK+YE + YK +I++LE HQ +QE ++F+N++T YTME +
Sbjct: 391 ARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHI 450
Query: 421 RVGWEQLLTSINRNINEVENQILTRD 446
RVGWE LLT+I R INEVE QILTRD
Sbjct: 451 RVGWELLLTTIARTINEVETQILTRD 476
Score = 70.3 bits (171), Expect = 6e-13
Identities = 38/282 (13%), Positives = 101/282 (35%), Gaps = 5/282 (1%)
Query: 207 AEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLG 266
+ + ++ + L E+ + A+ W+ T L + TM+ +Q ++ ++
Sbjct: 2 SSAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHK 61
Query: 267 EA-DKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTL 325
+E + +++ ++ P P +D+ W + + + L
Sbjct: 62 PPKVQEKCQLEINFNTLQTKLRISNRPA--FMPSEGKMVSDIAGAWQRLEQAEKGYEEWL 119
Query: 326 QAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQ--GSLEDQLHRLKEYEQ 383
E+R+ + E L +F +KA+ W + + + L + + +E
Sbjct: 120 LNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFES 179
Query: 384 GVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVENQIL 443
+ A++ +E++ I Q + E + + + W++L T + +E
Sbjct: 180 DLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEK 239
Query: 444 TRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSL 485
++ + + A FN++ + L + +
Sbjct: 240 LLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEI 281
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 216 bits (550), Expect = 2e-66
Identities = 155/246 (63%), Positives = 187/246 (76%)
Query: 91 SEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESD 150
+E+ RLERLEHLA+KF+ KA HE W GKE++L D+ L E++AL +KHEAFESD
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63
Query: 151 LAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKI 210
LAAHQDRVEQIAAIAQELN L+YHD+V+VN RCQ+ICDQWD LG LTQ+RR AL+ EK+
Sbjct: 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL 123
Query: 211 LEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADK 270
LE ID LHLEFAKRAAPFNNW++G EDL DMFIVH++EEIQ LI AH QFKATL EAD
Sbjct: 124 LETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADG 183
Query: 271 EYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELR 330
E SI+ + EVE +Q Y I NPY+ +T ++L KW V++LVP RD +LQ EL
Sbjct: 184 ERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 243
Query: 331 KQQNNE 336
+Q NE
Sbjct: 244 RQHANE 249
Score = 77.0 bits (189), Expect = 5e-16
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 8/155 (5%)
Query: 66 KMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQ 125
I + W L T + E L LE ++ L +F +A +W G E LQ
Sbjct: 94 DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ 153
Query: 126 SSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQEL-------NTLEYHDSVS 178
+ E+++L HE F++ L + I AI E+ N +
Sbjct: 154 DMFIVH-SIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY 212
Query: 179 VNARCQRICDQWDHLGALTQQRRHALDEAEKILEK 213
+ +WD + L R +L E
Sbjct: 213 STVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 67.8 bits (165), Expect = 9e-13
Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 211 LEKIDILHLEFAKRAAPFNNWLDGTREDLVDM-FIVHTMEEIQGLIDAHSQFKATLGEAD 269
LE+++ L +F ++A+ W G + L+ + ++ E++ L+ H F++ L
Sbjct: 9 LERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ 68
Query: 270 KEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAEL 329
I + +E+ Y + + + +W + L +R L+
Sbjct: 69 DRVEQIAAIAQELNE--LDYHDAVNVND-----RCQKICDQWDRLGTLTQKRREALERME 121
Query: 330 RKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMG--------LQGSLEDQLHRLKEY 381
+ + + L +FA++A W+E M+ + + + L + E L E
Sbjct: 122 KLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEA 181
Query: 382 EQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINR 433
+ + E+EK+ Q+ + N Y+ TM+ LR W+++ +
Sbjct: 182 DGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPI 233
Score = 40.4 bits (94), Expect = 0.001
Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 328 ELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQ--GSLEDQLHRLKEYEQGV 385
E+R+ + E L +F +KA+ W + + + L + + +E +
Sbjct: 5 EIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 386 YAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINR 433
A++ +E++ I Q + E + + + W++L T +
Sbjct: 65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQK 112
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 187 bits (475), Expect = 2e-54
Identities = 55/334 (16%), Positives = 123/334 (36%), Gaps = 25/334 (7%)
Query: 101 HLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQ 160
+ Q F + W E +L S D+ + L + L KKH+ E+D++AH+DR++
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGK-DLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 161 IAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLE 220
+ + A L T D+ V + + I ++ + ++ RR L+E+ + +
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR--------LHQ 113
Query: 221 FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVR 280
F + +W+ + + + +Q L H + +A L + +++ +
Sbjct: 114 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGK 173
Query: 281 EVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRR 340
++ + W ++++L R L+ L Q
Sbjct: 174 KLSDD-------NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ-------- 218
Query: 341 QFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELEKIH 399
QF + WI +M V S G +++ L + + +E +K + ++
Sbjct: 219 QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG 278
Query: 400 QAVQEGMIFENRYTQYTMETLRVGWEQLLTSINR 433
+ + + M+ L+ L + +
Sbjct: 279 EDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQ 312
Score = 98.4 bits (245), Expect = 9e-23
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 14/211 (6%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
W++ ++ S + L + R+KHK E A L T +LS+
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 61 MPTE-GKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHL--AQKFKHKADIHEDWT 117
E + ++ + WK L+ + R +RLE Q+F + E W
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAA----------RGQRLEESLEYQQFVANVEEEEAWI 231
Query: 118 RGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSV 177
K ++ S D+ L ++ L KKHEAFE+D H+DRV + A ++L H
Sbjct: 232 NEKMTLVASEDYGD-TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 290
Query: 178 SVNARCQRICDQWDHLGALTQQRRHALDEAE 208
++ A+ + + + L QR+ LDE
Sbjct: 291 NITAKMKGLKGKVSDLEKAAAQRKAKLDENS 321
Score = 88.0 bits (218), Expect = 3e-19
Identities = 55/326 (16%), Positives = 111/326 (34%), Gaps = 30/326 (9%)
Query: 4 LQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPT 63
L S L+ V L++++ + + N+ L S+
Sbjct: 26 LASEDYGKDLASVNNLLKKHQLLEAD-----ISAHEDRLKDLNSQADSLMTSSAFDTSQV 80
Query: 64 EGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEM 123
+ K I ++ +++ + + H +F D E W + K+ +
Sbjct: 81 KDKR-ETINGRFQRIKS--------MAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLL 131
Query: 124 LQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARC 183
+ S D+ + L ++ L+KKH+ E++LAAH+ ++ + ++L+ + R
Sbjct: 132 VSSEDYGR-DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRL 190
Query: 184 QRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMF 243
+ D W L L R L+E+ + + +F W++ +
Sbjct: 191 AQFVDHWKELKQLAAARGQRLEESLE--------YQQFVANVEEEEAWINEKMTLVASED 242
Query: 244 IVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALT 303
T+ IQGL+ H F+ + V +V + +
Sbjct: 243 YGDTLAAIQGLLKKHEAFETDFTVHK-------DRVNDVCANGEDLIKKNNHHVENITAK 295
Query: 304 ANDLTKKWTDVRKLVPQRDTTLQAEL 329
L K +D+ K QR L
Sbjct: 296 MKGLKGKVSDLEKAAAQRKAKLDENS 321
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 168 bits (426), Expect = 2e-47
Identities = 46/332 (13%), Positives = 110/332 (33%), Gaps = 24/332 (7%)
Query: 103 AQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIA 162
AQ++ AD E W +E + S + + + K+H + + + ++Q+A
Sbjct: 6 AQQYYLDADEAEAWIGEQELYVISDEIPK-DEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFA 222
+ AQ L + + + + ++ + L + ++R+ L+ +
Sbjct: 65 SRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYH--------LFQLK 116
Query: 223 KRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREV 282
+ W+ + + + L D F G +E V V
Sbjct: 117 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQE------RVDNV 170
Query: 283 ESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQF 342
+ +++ G E A + L + W D+ +L+ R L A ++
Sbjct: 171 NAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH--------RY 222
Query: 343 AEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAV 402
++ I+ + + + E +E+ V+ +++ + + +
Sbjct: 223 FYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRL 282
Query: 403 QEGMIFEN-RYTQYTMETLRVGWEQLLTSINR 433
Q E Q + + W+ LL +
Sbjct: 283 QTAYAGEKAEAIQNKEQEVSAAWQALLDACAG 314
Score = 74.6 bits (183), Expect = 1e-14
Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 16/208 (7%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
S + V +++R + R+ E+ + L + +
Sbjct: 130 ELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL-----IDAGHSE 184
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
T + + W L + + L + ++ + K
Sbjct: 185 AATIAEWKDGLNEMWADLLELIDTRMQLL--------AASYDLHRYFYTGAEILGLIDEK 236
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHD-SVSV 179
L + ++ + H AFE D+ +V+Q +A L T + + ++
Sbjct: 237 HRELPEDVGLD--ASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAI 294
Query: 180 NARCQRICDQWDHLGALTQQRRHALDEA 207
+ Q + W L RR L +
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQLVDT 322
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 165 bits (418), Expect = 2e-47
Identities = 33/203 (16%), Positives = 72/203 (35%), Gaps = 7/203 (3%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+ R+ +S ++ ++ ++ P + K + + + +L+ ++
Sbjct: 31 TAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLK-- 88
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
G D+ W L + E+ L SE RLE L+ + K + +A + E+
Sbjct: 89 -VPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQA 147
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
+ +LQS +L + ++ E DL + + Q L + +
Sbjct: 148 DALLQS----DVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMY 203
Query: 181 ARCQRICDQWDHLGALTQQRRHA 203
R R+ + + R A
Sbjct: 204 RRVYRLHKRLVAIRTEYNLRLKA 226
Score = 82.5 bits (203), Expect = 5e-18
Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 8/232 (3%)
Query: 214 IDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKAT-LGEADKEY 272
+ + E+ + W+ + + EEI+ L +FK L + +
Sbjct: 9 LQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADK 68
Query: 273 NSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQ 332
N + + +E VQ Q+ D+ K+W + + +R+ L++E +
Sbjct: 69 NRSKGIYQSLEGAVQAGQLK-----VPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERL 123
Query: 333 QNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHI 392
+ + + + +A + + + S L + R E E+ + I
Sbjct: 124 EALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLL--AAGKVPQRAGEVERDLDKADSMI 181
Query: 393 EELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVENQILT 444
L Q +++G + + L + T N + T
Sbjct: 182 RLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAAPAT 233
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 160 bits (405), Expect = 6e-47
Identities = 67/126 (53%), Positives = 86/126 (68%)
Query: 208 EKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGE 267
EK LE ID LHLE+AKRAAPFNNW++ EDL DMFIVHT+EEI+GLI AH QFK+TL +
Sbjct: 4 EKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPD 63
Query: 268 ADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQA 327
AD+E +I+ + +E + + I NPYT +T + KW V++LVP+RD L
Sbjct: 64 ADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLE 123
Query: 328 ELRKQQ 333
E KQQ
Sbjct: 124 EQSKQQ 129
Score = 85.9 bits (212), Expect = 3e-20
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 91 SEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESD 150
S +LE ++ L ++ +A +W E LQ F + E++ L H+ F+S
Sbjct: 2 STEKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQD-MFIVHTIEEIEGLISAHDQFKST 60
Query: 151 LAAHQDRVEQIAAIAQELNTLEYHDSVSVNAR-------CQRICDQWDHLGALTQQRRHA 203
L E I AI +E + + + ++ Q I +W+ + L +R HA
Sbjct: 61 LPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHA 120
Query: 204 LDE 206
L E
Sbjct: 121 LLE 123
Score = 34.6 bits (79), Expect = 0.024
Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 330 RKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIG--------MGLQGSLEDQLHRLKEY 381
++ + + L ++A++A W+E M+ + + GL + + L +
Sbjct: 5 KQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDA 64
Query: 382 EQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSI 431
++ A +E ++I ++ + N YT T + + WE++ +
Sbjct: 65 DREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLV 114
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 128 bits (322), Expect = 4e-34
Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 16/227 (7%)
Query: 103 AQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIA 162
Q F + W E +L S D+ + L + L KKH+ E+D++AH+DR++ +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGK-DLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFA 222
+ A L T D+ V + + I ++ + ++ RR L+E+ + +F
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR--------LHQFF 115
Query: 223 KRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREV 282
+ +W+ + + + +Q L H + +A L + +++ +++
Sbjct: 116 RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKL 175
Query: 283 ESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAEL 329
+ W ++++L R L+ L
Sbjct: 176 SDD-------NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Score = 83.8 bits (207), Expect = 1e-18
Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 8/205 (3%)
Query: 3 WLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMP 62
WL + + K L +KH+ + A + + L A+
Sbjct: 18 WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT 77
Query: 63 TEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEE 122
S + + + + + + + +L L Q F D E W + K+
Sbjct: 78 ------SQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEESWIKEKKL 130
Query: 123 MLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNAR 182
++ S D+ + L ++ L+KKH+ E++LAAH+ ++ + ++L+ + R
Sbjct: 131 LVSSEDYGRD-LTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQR 189
Query: 183 CQRICDQWDHLGALTQQRRHALDEA 207
+ D W L L R L+E+
Sbjct: 190 LAQFVDHWKELKQLAAARGQRLEES 214
Score = 54.2 bits (130), Expect = 2e-08
Identities = 27/210 (12%), Positives = 66/210 (31%), Gaps = 16/210 (7%)
Query: 220 EFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLV 279
F F+ WL L + + L+ H +A + ++ + +
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEA-------DISAHEDRL 59
Query: 280 REVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLR 339
+++ S + + ++ ++ + R L R Q
Sbjct: 60 KDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ------ 113
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
F + WI+ + V+S G +++ + K E + A++P I+ +
Sbjct: 114 --FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT 171
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLL 428
+ + + Q + W++L
Sbjct: 172 GKKLSDDNTIGKEEIQQRLAQFVDHWKELK 201
Score = 33.4 bits (76), Expect = 0.16
Identities = 12/102 (11%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
+ F W+ + S G S+ + L + + E + A++ +++L
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVEN 440
++ F+ + ET+ ++++ + ++
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNE 107
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 121 bits (306), Expect = 1e-33
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 528 TDTDTAEQVIDSFRILAGDKPYILPDELRRELPPDQAEYCIQRMPPYKGPNAIPGALDYQ 587
DTDTAEQVI SFRILA DKPYIL +ELRRELPPDQA+YCI+RMP Y GP ++PGALDY
Sbjct: 4 ADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYA 63
Query: 588 SFSTALYGESDL 599
+FS+ALYGESDL
Sbjct: 64 AFSSALYGESDL 75
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 127 bits (321), Expect = 8e-33
Identities = 41/339 (12%), Positives = 108/339 (31%), Gaps = 26/339 (7%)
Query: 97 ERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDL-AAHQ 155
+ H + + D E W +E + S + Q + L+++ F D Q
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQD-YEHVTMLQERFREFARDTGNIGQ 60
Query: 156 DRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKID 215
+RV+ + +A EL + D+ ++ + + W L L R L + ++
Sbjct: 61 ERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYEL----- 115
Query: 216 ILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSI 275
+F A + + L + + ++ L H+ F+ + + +
Sbjct: 116 ---HKFYHDAKEIFGRIQDKHKKLPEE-LGRDQNTVETLQRMHTTFEHDIQALGTQVRQL 171
Query: 276 VNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNN 335
++ G + N++ + W + R L K
Sbjct: 172 QEDAARLQ------AAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKF--- 222
Query: 336 ETLRRQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEE 394
+F + W+E + + + S+E ++ + + + A
Sbjct: 223 -----RFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTT 277
Query: 395 LEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINR 433
++ +++ + + + + L ++++
Sbjct: 278 CIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWED 316
Score = 122 bits (307), Expect = 5e-31
Identities = 48/329 (14%), Positives = 100/329 (30%), Gaps = 35/329 (10%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
S + V E +R + R E+ + + L +++ +
Sbjct: 26 EVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL-----INSGHSD 80
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLE--HLAQKFKHKADIHEDWTR 118
T + + AW L + R + L + KF H A +
Sbjct: 81 AATIAEWKDGLNEAWADLLELIDT----------RTQILAASYELHKFYHDAKEIFGRIQ 130
Query: 119 GKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTL-EYHDSV 177
K + L + N ++ L++ H FE D+ A +V Q+ A L +
Sbjct: 131 DKHKKL--PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKAD 188
Query: 178 SVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTRE 237
+ R + + W L + RR L + F W++
Sbjct: 189 DIQKRENEVLEAWKSLLDACESRRVRLVDTGD--------KFRFFSMVRDLMLWMEDVIR 240
Query: 238 DLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLEN 297
+ + ++ L++ H KA + + + + + L + + + +
Sbjct: 241 QIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR-------KHYAS 293
Query: 298 PYTALTANDLTKKWTDVRKLVPQRDTTLQ 326
LT+K ++ R L+
Sbjct: 294 EEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 122 bits (308), Expect = 3e-32
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 14/209 (6%)
Query: 3 WLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMP 62
W++ ++ S + L + R+KHK E A + L T +LS+
Sbjct: 15 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGK 74
Query: 63 TE-GKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHL--AQKFKHKADIHEDWTRG 119
E + ++ + WK L+ + R +RLE Q+F + E W
Sbjct: 75 EEIQQRLAQFVDHWKELKQLAAA----------RGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 120 KEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSV 179
K ++ S D+ L ++ L KKHEAFE+D H+DRV + A ++L H ++
Sbjct: 125 KMTLVASEDYGDT-LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 183
Query: 180 NARCQRICDQWDHLGALTQQRRHALDEAE 208
A+ + + + L QR+ LDE
Sbjct: 184 TAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 100 bits (251), Expect = 2e-24
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 16/225 (7%)
Query: 102 LAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQI 161
+ +F D E W + K+ ++ S D+ + L ++ L+KKH+ E++LAAH+ ++ +
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGR-DLTGVQNLRKKHKRLEAELAAHEPAIQSV 59
Query: 162 AAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEF 221
++L+ + R + D W L L R L+E+ + + +F
Sbjct: 60 LDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE--------YQQF 111
Query: 222 AKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVRE 281
W++ + T+ IQGL+ H F+ N + +
Sbjct: 112 VANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGED 171
Query: 282 VESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQ 326
+ L K +D+ K QR L
Sbjct: 172 LIKK-------NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD 209
Score = 48.8 bits (116), Expect = 1e-06
Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 16/215 (7%)
Query: 220 EFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLV 279
+F + +W+ + + + +Q L H + + E + +
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE-------AELAAHEPAI 56
Query: 280 REVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLR 339
+ V T ++ + W ++++L R L+ L QQ
Sbjct: 57 QSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ------ 110
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMG-LQGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
F + WI +M V S G +++ L + + +E +K + ++
Sbjct: 111 --FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN 168
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINR 433
+ + + M+ L+ L + +
Sbjct: 169 GEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQ 203
Score = 32.2 bits (73), Expect = 0.33
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 338 LRRQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELE 396
+ QF + WI+ + V+S G +++ + K E + A++P I+ +
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVL 60
Query: 397 KIHQAVQEGMIFENRYTQYTMETLRVGWEQLL 428
+ + + Q + W++L
Sbjct: 61 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELK 92
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 115 bits (289), Expect = 1e-29
Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 15/201 (7%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+ S + ++G + LE +H+ R E A+ T Q +L Y
Sbjct: 33 RGLVSSDELAKDVTGAEALLE-------RHQEHRTEIDARAGTFQAFEQFGQQLLAHGHY 85
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
E I L+ E+ + M L++ L Q F + E+W +
Sbjct: 86 ASPE------IKQKLDILDQERADLEKAWVQRRMMLDQCLEL-QLFHRDCEQAENWMAAR 138
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
E L + D L+ ++AL KKHE F+ + ++++ + A A +L ++ ++
Sbjct: 139 EAFLNTEDKGDS-LDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDIS 197
Query: 181 ARCQRICDQWDHLGALTQQRR 201
+R + D+W L A ++R
Sbjct: 198 SRRNEVLDRWRRLKAQMIEKR 218
Score = 77.3 bits (190), Expect = 2e-16
Identities = 29/229 (12%), Positives = 78/229 (34%), Gaps = 18/229 (7%)
Query: 95 RLERLEHL--AQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLA 152
Q+F W G ++ S + + + +AL ++H+ +++
Sbjct: 5 HHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAK-DVTGAEALLERHQEHRTEID 63
Query: 153 AHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILE 212
A + Q+L ++ S + + + + L QRR LD+ ++
Sbjct: 64 ARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL-- 121
Query: 213 KIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEY 272
F + NW+ L +++ ++ LI H F + +++
Sbjct: 122 ------QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKI 175
Query: 273 NSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQR 321
++ ++ + G + N++ +W ++ + ++
Sbjct: 176 AALQAFADQLIAA-------GHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 48.4 bits (115), Expect = 2e-06
Identities = 28/245 (11%), Positives = 75/245 (30%), Gaps = 36/245 (14%)
Query: 196 LTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLI 255
+ H ++ + F +W++G R + + + + L+
Sbjct: 1 MGHHHHHHSHDSHDLQR--------FLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALL 52
Query: 256 DAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTA-----NDLTKK 310
+ H + + + + + +++ L + + A + L ++
Sbjct: 53 ERHQEHRTEIDARAGTFQAFEQFGQQL------------LAHGHYASPEIKQKLDILDQE 100
Query: 311 WTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTS--IGMGLQ 368
D+ K QR L L Q F Q W+ + + + G L
Sbjct: 101 RADLEKAWVQRRMMLDQCLELQL--------FHRDCEQAENWMAAREAFLNTEDKGDSLD 152
Query: 369 GSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLL 428
S+E + + +++++ + + I L+ + + + W +L
Sbjct: 153 -SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLK 211
Query: 429 TSINR 433
+
Sbjct: 212 AQMIE 216
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 109 bits (275), Expect = 6e-29
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 103 AQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIA 162
Q + ++ E W +E L + D ++AL KKHE F+ + H+ ++ +
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANA-GGNVEALIKKHEDFDKAINGHEQKIAALQ 63
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDE 206
+A +L ++ S V+ + +++ ++W HL ++R L +
Sbjct: 64 TVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 29.8 bits (67), Expect = 0.72
Identities = 7/91 (7%), Positives = 32/91 (35%), Gaps = 1/91 (1%)
Query: 340 RQFAEKANQVGPWIERQMDAVTSIGMGL-QGSLEDQLHRLKEYEQGVYAYKPHIEELEKI 398
+ + W+ + + + G++E + + +++++ + ++ I L+ +
Sbjct: 6 QLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTV 65
Query: 399 HQAVQEGMIFENRYTQYTMETLRVGWEQLLT 429
+ + + + + W L
Sbjct: 66 ADQLIAQNHYASNLVDEKRKQVLERWRHLKE 96
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 107 bits (269), Expect = 3e-26
Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 14/197 (7%)
Query: 97 ERLEHLA--QKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAH 154
+ L F A W KEE D+ + + A K+ + A +L
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSD-RNTNMTAKKESYSALMRELELK 60
Query: 155 QDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKI 214
+ +++++ L ++ +V + + QW + L L E
Sbjct: 61 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAA----- 115
Query: 215 DILHLEFAKRAAPFNNWLDGTREDLVDMFIV---HTMEEIQGLIDAHSQFKATLGEADKE 271
+ +F L +E L + T+ ++ L+ K L E
Sbjct: 116 ---YFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGH 172
Query: 272 YNSIVNLVREVESTVQQ 288
+ + + V +
Sbjct: 173 LSGLAKRAKAVVQLKPR 189
Score = 42.0 bits (98), Expect = 3e-04
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 28/200 (14%)
Query: 211 LEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADK 270
+ ++ LH F A WL+ E+ V + +++S L +K
Sbjct: 4 MRSLESLH-SFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK 62
Query: 271 EYNSIVN----LVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQ 326
+ + N L+RE + L +W+ + +L + L+
Sbjct: 63 KIKELQNAGDRLLREDHPARPTVE-----------SFQAALQTQWSWMLQLCCCIEAHLK 111
Query: 327 AELRKQQNNETLRRQFAEKANQVGPWI---ERQMDAVTSIGMGL-QGSLEDQLHRLKEYE 382
Q F + + + + S LED L ++ +
Sbjct: 112 ENAAYFQ--------FFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEK 163
Query: 383 QGVYAYKPHIEELEKIHQAV 402
+ + YK H+ L K +AV
Sbjct: 164 EQLNEYKGHLSGLAKRAKAV 183
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 105 bits (263), Expect = 4e-26
Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 21/206 (10%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+ + L V+ +L +R + +E+ + + +L + R AY
Sbjct: 25 QHRVDGAEWGVDLPSVEAQLGSHRGLHQ-----SIEEFRAKIERARSDEGQLSPATRGAY 79
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
L + + + L S RL LE L F A W K
Sbjct: 80 RDC--------------LGRLDLQYAKLLNSSKARLRSLESL-HSFVAAATKELMWLNEK 124
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
EE D+ + + A K+ + A +L + +++++ L ++ +V
Sbjct: 125 EEEEVGFDWSD-RNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVE 183
Query: 181 ARCQRICDQWDHLGALTQQRRHALDE 206
+ + QW + L L E
Sbjct: 184 SFQAALQTQWSWMLQLCCCIEAHLKE 209
Score = 65.4 bits (159), Expect = 2e-12
Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 22/227 (9%)
Query: 100 EHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVE 159
L W + + +++ L ++A H + + ++E
Sbjct: 4 MELEDSTLRYLQDLLAWVEENQHRVDGAEWGV-DLPSVEAQLGSHRGLHQSIEEFRAKIE 62
Query: 160 QIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHL 219
+ + +L+ + R+ Q+ L ++ R +L+
Sbjct: 63 RARSDEGQLSPATRG---AYRDCLGRLDLQYAKLLNSSKARLRSLESLHS---------- 109
Query: 220 EFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLV 279
F A WL+ E+ V + +++S L +K+ + N
Sbjct: 110 -FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAG 168
Query: 280 REVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQ 326
+ P L +W+ + +L + L+
Sbjct: 169 DRLLRE-------DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLK 208
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 110 bits (276), Expect = 4e-26
Identities = 36/290 (12%), Positives = 88/290 (30%), Gaps = 38/290 (13%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+ L+ V++ + +R + + + +L
Sbjct: 22 RAEMDMVAWGVDLASVEQHINSHRG---------------IHNSIGDYRWQL-------- 58
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
+ + E+ +E L + R++ L L Q W
Sbjct: 59 -----DKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQL-QNIIQATSREIMWINDC 112
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVN 180
EE D+ + ++ S L + + ++ + +L ++ S +
Sbjct: 113 EEEELLYDWSDK-NTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIE 171
Query: 181 ARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLV 240
A + QW + +T+ L E + +F + A +L G ++ +
Sbjct: 172 AYMDTLQTQWSWILQITKCIDVHLKENAA--------YFQFFEEAQSTEAYLKGLQDSIR 223
Query: 241 DMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQ 290
+ +Q L++ + + + + + NLV + + VQ
Sbjct: 224 KKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKP 273
Score = 83.2 bits (205), Expect = 3e-17
Identities = 36/305 (11%), Positives = 100/305 (32%), Gaps = 43/305 (14%)
Query: 104 QKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAA 163
+ KH W R + + + L ++ H + + ++ ++++I A
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGV-DLASVEQHINSHRGIHNSIGDYRWQLDKIKA 63
Query: 164 IAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAK 223
+E + ++ +++++L + +R L + +
Sbjct: 64 DLREKS------------AIYQLEEEYENLLKASFERMDHLRQL-----------QNIIQ 100
Query: 224 RAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVE 283
+ W++ E+ + I +A S + L +KE N + ++
Sbjct: 101 ATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLV 160
Query: 284 STVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFA 343
+ + L +W+ + ++ D L+ Q F
Sbjct: 161 LN-------QHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQ--------FF 205
Query: 344 EKANQVGPWIERQMDAVTSIGMGLQG----SLEDQLHRLKEYEQGVYAYKPHIEELEKIH 399
E+A +++ D++ + L +Q+ L++ + + YK ++ L
Sbjct: 206 EEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKS 265
Query: 400 QAVQE 404
+ + +
Sbjct: 266 KKIVQ 270
Score = 39.3 bits (91), Expect = 0.003
Identities = 26/206 (12%), Positives = 66/206 (32%), Gaps = 15/206 (7%)
Query: 3 WLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQT---KLRLSNRPA 59
W+ + + L K + + + K E N L+ +L L+ PA
Sbjct: 108 WINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVK-EKELNKLKQESDQLVLNQHPA 166
Query: 60 YMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRG 119
E M + W + + + L+ +F +A E + +G
Sbjct: 167 SDKIEAYM-DTLQTQWSWIL-------QITKCIDVHLKENAAY-FQFFEEAQSTEAYLKG 217
Query: 120 KEEMLQSSDFRQCK--LNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSV 177
++ ++ L L K+ E + ++ +V+ + ++++ L+ +
Sbjct: 218 LQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPD 277
Query: 178 SVNARCQRICDQWDHLGALTQQRRHA 203
+ + + D+ +
Sbjct: 278 YRSNKPIILRALCDYKQDQKIVHKGD 303
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 102 bits (256), Expect = 9e-26
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Query: 70 DIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDF 129
+I + + T +SF+E + +LE HL Q FK AD W K +L +
Sbjct: 26 EIQERRQEVLTRYQSFKERVAERGQKLEDSYHL-QVFKRDADDLGKWIMEKVNILTDKSY 84
Query: 130 RQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQ 189
++ +KH++ E+++ + ++ +E T+ + A + +
Sbjct: 85 ED--PTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 190 WDHLGALTQQRRHALDEA 207
WD L LT ++ L A
Sbjct: 143 WDLLLELTLEKGDQLLRA 160
Score = 40.7 bits (95), Expect = 3e-04
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 8/125 (6%)
Query: 305 NDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIG 364
++ ++ ++ V +R L+ Q F A+ +G WI +++ +T
Sbjct: 32 QEVLTRYQSFKERVAERGQKLEDSYHLQV--------FKRDADDLGKWIMEKVNILTDKS 83
Query: 365 MGLQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGW 424
+++ + + + E V + ELEK + + T+ +E LR W
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLW 143
Query: 425 EQLLT 429
+ LL
Sbjct: 144 DLLLE 148
Score = 35.7 bits (82), Expect = 0.015
Identities = 21/180 (11%), Positives = 48/180 (26%), Gaps = 28/180 (15%)
Query: 154 HQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEK 213
+ + + ++ + + R Q + ++ +R L+++
Sbjct: 6 QFPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH---- 57
Query: 214 IDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYN 273
L F + A W+ L D IQG H +A + + +
Sbjct: 58 ---LQ-VFKRDADDLGKWIMEKVNILTDK-SYEDPTNIQGKYQKHQSLEAEVQTKSRLMS 112
Query: 274 SIVNLVREVESTVQQYQIPGGLENPYTALT----ANDLTKKWTDVRKLVPQRDTTLQAEL 329
+ E + +L W + +L ++ L L
Sbjct: 113 ELEKTREERFT-----------MGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 101 bits (252), Expect = 1e-24
Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 18/209 (8%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQT--KLRLSNRP 58
+ S SL ++ L+ +H + E ++ ++ K+
Sbjct: 20 QKAVASEDMPESLPEAEQLLQ-------QHAGIKDEIDGHQDSYQRVKESGEKVIQGQTD 72
Query: 59 AYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTR 118
G+ + + W L +S L Q+F+ A E
Sbjct: 73 PEYLLLGQRLEGLDTGWDALGRMWESRSHTL--------AQCLGFQEFQKDAKQAEAILS 124
Query: 119 GKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVS 178
+E L + L +A +K E F + ++D+V +L S
Sbjct: 125 NQEYTLAHLEPPDS-LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK 183
Query: 179 VNARCQRICDQWDHLGALTQQRRHALDEA 207
+ + Q I D+ Q+ L +
Sbjct: 184 IKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 91.5 bits (227), Expect = 3e-21
Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 17/229 (7%)
Query: 102 LAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQI 161
+ Q F D + W ++ + S D + L E + L ++H + ++ HQD +++
Sbjct: 1 MEQAFLQDLDDFQAWLSITQKAVASEDMPE-SLPEAEQLLQQHAGIKDEIDGHQDSYQRV 59
Query: 162 AAIAQELNTLEYHDSVS-VNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLE 220
+++ + + R + + WD LG + + R H L + E
Sbjct: 60 KESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGF--------QE 111
Query: 221 FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVR 280
F K A L L + ++E + I F ++ + S V+
Sbjct: 112 FQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGN 171
Query: 281 EVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAEL 329
++ + G L + + + + + L+ L
Sbjct: 172 KLVAE-------GNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNL 213
Score = 52.6 bits (126), Expect = 6e-08
Identities = 25/209 (11%), Positives = 62/209 (29%), Gaps = 15/209 (7%)
Query: 221 FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVR 280
F + F WL T++ + + ++ E + L+ H+ K + Y +
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 281 EVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRR 340
+V Q E L W + ++ R TL L Q
Sbjct: 65 KV------IQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQ-------- 110
Query: 341 QFAEKANQVGPWIERQMDAVTSIGMG-LQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIH 399
+F + A Q + Q + + + E + + +++ + + +
Sbjct: 111 EFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSG 170
Query: 400 QAVQEGMIFENRYTQYTMETLRVGWEQLL 428
+ + + ++ + +
Sbjct: 171 NKLVAEGNLYSDKIKEKVQLIEDRHRKNN 199
Score = 29.1 bits (65), Expect = 3.1
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 338 LRRQFAEKANQVGPWIERQMDAVTSIGMGLQ-GSLEDQLHRLKEYEQGVYAYKPHIEELE 396
+ + F + + W+ AV S M E L + + + ++ + ++
Sbjct: 1 MEQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVK 60
Query: 397 KIHQAV-QEGMIFENRYTQYTMETLRVGWEQLL 428
+ + V Q E +E L GW+ L
Sbjct: 61 ESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALG 93
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 97.3 bits (242), Expect = 5e-24
Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 62 PTEGKMVSD---IANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTR 118
P+ K++ I + + F+E +LE Q F+ A+ E W +
Sbjct: 5 PSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRF-QFFQRDAEELEKWIQ 63
Query: 119 GKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVS 178
K ++ +++ L+ +KH+AFE+++ A+ + ++ + + + S +
Sbjct: 64 EKLQIASDENYKD--PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASET 121
Query: 179 VNARCQRICDQWDHLGALTQQRRHALDE 206
+ R + QW+ L +++ L +
Sbjct: 122 IRTRLMELHRQWELLLEKMREKGIKLLQ 149
Score = 35.6 bits (82), Expect = 0.012
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 305 NDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIG 364
+ ++ ++L R L+ R Q F A ++ WI+ ++ +
Sbjct: 22 QQVLDRYHRFKELSTLRRQKLEDSYRFQF--------FQRDAEELEKWIQEKLQIASDEN 73
Query: 365 MGLQGSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGW 424
+L+ +L + + +E V A I +L++ + F + + + L W
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQW 133
Query: 425 EQLLT 429
E LL
Sbjct: 134 ELLLE 138
Score = 34.1 bits (78), Expect = 0.044
Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 26/157 (16%)
Query: 175 DSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHL-EFAKRAAPFNNWLD 233
+ + R Q++ D++ L+ RR L+++ F + A W+
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDS---------YRFQFFQRDAEELEKWIQ 63
Query: 234 GTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPG 293
+ D +QG + H F+A + + + S
Sbjct: 64 EKLQIASDE-NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMIS--------- 113
Query: 294 GLENPYTALT----ANDLTKKWTDVRKLVPQRDTTLQ 326
E + + T +L ++W + + + ++ L
Sbjct: 114 --EGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 99.3 bits (247), Expect = 6e-24
Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 22/211 (10%)
Query: 1 MPWLQSRQTDNSLSGV---QKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNR 57
S + V + K ++ RV+ N +L +
Sbjct: 21 ELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN-------VNAFIERL-IDAG 72
Query: 58 PAYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWT 117
+ T + + W L + + L + ++ +
Sbjct: 73 HSEAATIAEWKDGLNEMWADLLELIDTRMQLL--------AASYDLHRYFYTGAEILGLI 124
Query: 118 RGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHD-S 176
K L + + ++ + H AFE +L +V+Q +A L T + +
Sbjct: 125 DEKHREL--PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKA 182
Query: 177 VSVNARCQRICDQWDHLGALTQQRRHALDEA 207
++ + Q + W L RR L +
Sbjct: 183 EAIQNKEQEVSAAWQALLDACAGRRTQLVDT 213
Score = 96.2 bits (239), Expect = 6e-23
Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 17/231 (7%)
Query: 104 QKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAA-HQDRVEQIA 162
+ K + D E W KE + S + Q + + L+ K F + A Q+RV+ +
Sbjct: 4 FQLKRETDDLEQWISEKELVASSPEMGQ-DFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFA 222
A + L + ++ ++ + + W L L R L + + +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDL--------HRYF 114
Query: 223 KRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREV 282
A +D +L + + H+ F+ L + ++ +
Sbjct: 115 YTGAEILGLIDEKHRELPEDV-GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173
Query: 283 ESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQ 333
+ G + +++ W + R T L K +
Sbjct: 174 Q------TAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 97.7 bits (243), Expect = 2e-23
Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 25/208 (12%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRR--KHKPPRVEQKAKLETNFNTLQTKLRLSNRP 58
L + + L V+ LE ++ R + +++ E
Sbjct: 40 QVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMT------------ 87
Query: 59 AYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTR 118
+ L E + + L + + L+ L F +A W
Sbjct: 88 ---------APLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTL-HNFVTRATNELIWLN 137
Query: 119 GKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVS 178
KEE + D+ + + + + K H +L ++ ++ + IA++L + ++
Sbjct: 138 EKEESEVAYDWSE-RNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLT 196
Query: 179 VNARCQRICDQWDHLGALTQQRRHALDE 206
+ A + QW + L Q + E
Sbjct: 197 IEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 70.0 bits (171), Expect = 8e-14
Identities = 21/194 (10%), Positives = 61/194 (31%), Gaps = 15/194 (7%)
Query: 89 LLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFE 148
L + L++ + +W + L +++ L +++ + H+
Sbjct: 8 PLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGS-DLPSVESHLENHKNVH 66
Query: 149 SDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAE 208
+ + +++ ++ +S + R+ Q+ L ++ + LD
Sbjct: 67 RAIEEFESSLKEAKISEIQMTA---PLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLH 123
Query: 209 KILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEA 268
F RA WL+ E V + H++ L +
Sbjct: 124 N-----------FVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQK 172
Query: 269 DKEYNSIVNLVREV 282
++ ++ + ++
Sbjct: 173 EESIKAVQEIAEQL 186
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 93.8 bits (233), Expect = 2e-22
Identities = 22/179 (12%), Positives = 62/179 (34%), Gaps = 9/179 (5%)
Query: 103 AQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIA 162
+F A W +++ + + ++ ++ L K H+ +++
Sbjct: 6 KFRFFSMARDLLSWMESIIRQIETQERPRD-VSSVELLMKYHQGINAEIETRSKNFSACL 64
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFA 222
+ + L ++ S + + Q++ + + + R L + +F+
Sbjct: 65 ELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLE--------VCQFS 116
Query: 223 KRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVRE 281
+ A+ WL L HT++ ++ LI H F+ + + + ++
Sbjct: 117 RDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTL 175
Score = 70.3 bits (172), Expect = 3e-14
Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 15/168 (8%)
Query: 1 MPWLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAY 60
+ +++++ +S V+ ++ H+ A++ET L L
Sbjct: 24 IRQIETQERPRDVSSVELLMK-------YHQ----GINAEIETRSKNFSACLELGES--L 70
Query: 61 MPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGK 120
+ + + +I + + + K E + RL L + +F A + E W +
Sbjct: 71 LQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEV-CQFSRDASVAEAWLIAQ 129
Query: 121 EEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQEL 168
E L S DF ++ ++ L K+HEAFE A+ +R +
Sbjct: 130 EPYLASGDFGHT-VDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLE 176
Score = 41.4 bits (97), Expect = 3e-04
Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 26/181 (14%)
Query: 230 NWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQY 289
+W++ + + ++ L+ H A + K +++ + L +
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESL------- 70
Query: 290 QIPGGLENPYTALTA-----NDLTKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAE 344
L+ + A + + ++ + R L+ L Q F+
Sbjct: 71 -----LQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQ--------FSR 117
Query: 345 KANQVGPWIERQMDAVTSIGMGLQ-GSLEDQLHRLKEYEQGVYAYKPHIEELEKIHQAVQ 403
A+ W+ Q + S G S+E + R + +E+ ++ LEK
Sbjct: 118 DASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLEL 177
Query: 404 E 404
+
Sbjct: 178 K 178
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 77.9 bits (193), Expect = 3e-17
Identities = 33/108 (30%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
T+EQ E R +F+ FD + TG + +E K + +LG+ K+ EI +++++ +D
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKE---EI--KKMISEIDKEG 55
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
TG ++F FL MT++ ++ DT E+++ +F++ D+ I L+R
Sbjct: 56 TGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKR 103
Score = 43.6 bits (104), Expect = 2e-05
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E +F FD + TG+++ + K LG + + + Q ++ D + G V
Sbjct: 80 EILKAFKLFDDDETGKISFKNLKRVAKELG-----ENLTDEELQEMIDEADRDGDGEVSE 134
Query: 517 DAFLDFMTR 525
FL M +
Sbjct: 135 QEFLRIMKK 143
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 77.5 bits (192), Expect = 4e-17
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVV 506
++ +T+EQ+ EF+ +F FDK+ G + +E + + SLG + + E+ Q ++ V
Sbjct: 1 AEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEA---EL--QDMINEV 55
Query: 507 DPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
D + G + F FL M R+ + D+ E++I++F++ D+ I ELR
Sbjct: 56 DADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVF--DRDGNGLISAAELRH 107
Score = 45.9 bits (110), Expect = 4e-06
Identities = 12/70 (17%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E +F FD++ G ++ E + + +LG ++ + + ++ D + G++++
Sbjct: 84 ELIEAFKVFDRDGNGLISAAELRHVMTNLG-----EKLTDDEVDEMIREADIDGDGHINY 138
Query: 517 DAFLDFMTRE 526
+ F+ M +
Sbjct: 139 EEFVRMMVSK 148
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 77.1 bits (191), Expect = 5e-17
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVV 506
S+ +T+EQ+ EF+ +F FDK+ +G ++ E + + SLG S + E+ ++ +
Sbjct: 2 SQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEA---EV--ADLMNEI 56
Query: 507 DPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
D + + F FL M+R+ D+ ++++++F++ DK I EL+
Sbjct: 57 DVDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVF--DKNGDGLISAAELKH 108
Score = 42.5 bits (101), Expect = 6e-05
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E +F FDKN G ++ E K L S+G ++ + + +L V + +G ++
Sbjct: 85 ELLEAFKVFDKNGDGLISAAELKHVLTSIG-----EKLTDAEVDEMLREVS-DGSGEINI 138
Query: 517 DAFLDFMTR 525
F +++
Sbjct: 139 KQFAALLSK 147
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 78.0 bits (193), Expect = 6e-17
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVV 506
+ +T+EQ+ EF+ +F+ FDK+ G + +E + + SLG + + E+ Q ++ V
Sbjct: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA---EL--QDMINEV 56
Query: 507 DPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
D + G + F FL M R+ DTD+ E++ ++FR+ DK YI ELR
Sbjct: 57 DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRH 108
Score = 51.4 bits (124), Expect = 8e-08
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E R +F FDK+ G ++ E + + +LG ++ + + ++ D + G V++
Sbjct: 85 EIREAFRVFDKDGNGYISAAELRHVMTNLG-----EKLTDEEVDEMIREADIDGDGQVNY 139
Query: 517 DAFLDFMTRESTDTDTA---EQVIDSFRI 542
+ F+ MT + A E + + R
Sbjct: 140 EEFVQMMTAKGGGGGAAARKEVIRNKIRA 168
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 76.8 bits (190), Expect = 1e-16
Identities = 33/115 (28%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 444 TRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRIL 503
+ G+T+EQ E R +F+ FD + +G + +E K + +LG+ K+ EI ++++
Sbjct: 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKE---EI--KKMI 70
Query: 504 AVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
+ +D + +G + F+ FL MT + + D+ E+++ +FR+ D I +LRR
Sbjct: 71 SEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRR 125
Score = 44.5 bits (106), Expect = 2e-05
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E +F FD + +G + ++ + LG + E + Q ++A D N +
Sbjct: 102 EILKAFRLFDDDNSGTITIKDLRRVAKELG-----ENLTEEELQEMIAEADRNDDNEIDE 156
Query: 517 DAFLDFMTRES 527
D F+ M + S
Sbjct: 157 DEFIRIMKKTS 167
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 76.4 bits (189), Expect = 1e-16
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ +EQ E +F+ FD N G L E K + +LG+ + K EI ++ D
Sbjct: 17 LLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKR---EI--LDLIDEYDSE 71
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
+ +D F M + D +++ +F++ D I LRR
Sbjct: 72 GRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRR 120
Score = 41.8 bits (99), Expect = 1e-04
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E + +F FD + TG+++ + + LG + + + + ++ D + G ++
Sbjct: 97 EIKRAFQLFDDDHTGKISIKNLRRVAKELG-----ETLTDEELRAMIEEFDLDGDGEINE 151
Query: 517 DAFLDFMTR 525
+ F+ T
Sbjct: 152 NEFIAICTD 160
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 74.4 bits (184), Expect = 5e-16
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+Q++EF+ +F FD RTG + E ++ L G + + D G
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPA---AF--NEMFNEADATGNG 57
Query: 513 YVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ F FL M R T + + + +FR D YI L+
Sbjct: 58 KIQFPEFLSMMGRRMKQTTSEDILRQAFRTF--DPEGTGYIPKAALQD 103
Score = 40.5 bits (96), Expect = 3e-04
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
R +F FD TG + + L++LG DR +F L + + G + +
Sbjct: 80 ILRQAFRTFDPEGTGYIPKAALQDALLNLG-----DRLKPHEFAEFLGITETEK-GQIRY 133
Query: 517 DAFLDFMT 524
D F++ M
Sbjct: 134 DNFINTMF 141
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 77.6 bits (191), Expect = 2e-15
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+T+EQ+ EF+ +F+ FDK+ G + +E + + SLG + + + Q ++ VD +
Sbjct: 306 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA-----ELQDMINEVDAD 360
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
G + F FL M R+ DTD+ E++ ++FR+ DK YI ELR
Sbjct: 361 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVF--DKDGNGYISAAELRH 409
Score = 44.5 bits (105), Expect = 6e-05
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E R +F FDK+ G ++ E + + +LG + + E+D ++ D + G V++
Sbjct: 386 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE---EVD--EMIREADIDGDGQVNY 440
Query: 517 DAFLDFMTRE 526
+ F+ MT +
Sbjct: 441 EEFVQMMTAK 450
Score = 30.2 bits (68), Expect = 2.3
Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 35/134 (26%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+ F K+ E K +L I ID
Sbjct: 242 KSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELK---GID------------ 286
Query: 511 TGYVHFDAFLDFMTRE----STDTDTAEQVID---SFRILAGDKP-YILPDELR---REL 559
F + + + + D T EQ+ + +F + D I EL R L
Sbjct: 287 -----FKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL 341
Query: 560 --PPDQAEYCIQRM 571
P +AE +Q M
Sbjct: 342 GQNPTEAE--LQDM 353
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 72.6 bits (179), Expect = 3e-15
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVV 506
+ + E++ E R +F FDK++ G + + +C+ ++GY + E+ + +
Sbjct: 2 DRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEM---EL--IELSQQI 56
Query: 507 DPNSTGYVHFDAFLDFMTR----ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ N G+V FD F++ M E+ D +++ D+FR D I ELR
Sbjct: 57 NMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREF--DTNGDGEISTSELRE 112
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVS-LGYSIGKDRQGEIDF 499
++L + I ++L R +F FD N G ++ E + + + LG+ +G D
Sbjct: 76 KLLAETADMIGVKEL---RDAFREFDTNGDGEISTSELREAMRALLGHQVGHR-----DI 127
Query: 500 QRILAVVDPNSTGYVHFDAFLDFMTR 525
+ I+ VD N G V F+ F+ M+R
Sbjct: 128 EEIIRDVDLNGDGRVDFEEFVRMMSR 153
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 69.6 bits (171), Expect = 5e-15
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRI 502
++ K +T E+ E++ +F FDK+ +L EE + + +LG + K I
Sbjct: 1 MSEQKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQ-----KISEI 55
Query: 503 LAVVDPNSTGYVHFDAFLDFMTRESTDTDT 532
+ D +++G + FL M + D+
Sbjct: 56 VKDYDKDNSGKFDQETFLTIMLEYGQEVDS 85
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 71.8 bits (177), Expect = 6e-15
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 448 KGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVD 507
+++E + EF+A+F+ FD + G ++ +E + + LG + K+ E+ I+ VD
Sbjct: 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE---EL--DAIIEEVD 66
Query: 508 PNSTGYVHFDAFLDFMTR---ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ +G + F+ FL M R E + E++ + FRI DK +I +EL
Sbjct: 67 EDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIF--DKNADGFIDIEELGE 120
Score = 42.9 bits (102), Expect = 5e-05
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E F FDKN G + EE L + G + E D + ++ D N+ G + F
Sbjct: 97 ELANCFRIFDKNADGFIDIEELGEILRATG-----EHVTEEDIEDLMKDSDKNNDGRIDF 151
Query: 517 DAFLDFMT 524
D FL M
Sbjct: 152 DEFLKMME 159
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 71.1 bits (175), Expect = 7e-15
Identities = 14/108 (12%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+E+++E +K+ G+++ + LG + + ++I +
Sbjct: 10 LEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSI---DE--KKIKELYG--- 61
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK-PYILPDELRR 557
+ ++ +L++++ D D E++I F + Y+ +++
Sbjct: 62 -DNLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKN 108
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E F HFD N TG L + K+ L + G D + + L + +
Sbjct: 85 ELIKMFAHFDNNCTGYLTKSQMKNILTTWG-----DALTDQEAIDALNAFSSE--DNIDY 137
Query: 517 DAFLDFMTR 525
F + + +
Sbjct: 138 KLFCEDILQ 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.4 bits (187), Expect = 1e-14
Identities = 80/544 (14%), Positives = 160/544 (29%), Gaps = 180/544 (33%)
Query: 2 PWLQS--RQTDNSLSGVQKKLEEYR--TYR-----RKHKPPRVEQKAKLETNFNTLQTKL 52
+L S + S + + E R Y K+ R++ + L+ L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-------YLKLRQAL 144
Query: 53 RLSNRPAY------MPTEGK--MVSDIANAWKGLETSE-KSFEEWL--------LSEMMR 95
L RPA + GK + D+ ++K + K F WL + +
Sbjct: 145 -LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEM 201
Query: 96 LERLEH-LAQKFKHKADIH-------EDWTRGKEEMLQSSDFR----------------- 130
L++L + + + ++D +L+S +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 131 ---QCKL----------NELKALKKKHEAFESDLAA-HQDRVEQIAA--IAQELNTLEYH 174
CK+ + L A H + + D V+ + + L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-R 320
Query: 175 DSVSVN--------ARCQRICDQWDHLGALTQQRRHALDEAEKILEK-IDILHLEFAKRA 225
+ ++ N + WD+ + D+ I+E +++L ++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 226 ----APFNN------------WLDGTREDLVDMFIVHTMEEIQGLIDA---------HSQ 260
+ F W D + D M +V+ + + L++ S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHK-YSLVEKQPKESTISIPSI 431
Query: 261 FKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTD------- 313
+ + + EY L R + V Y IP ++ +DL + D
Sbjct: 432 YLELKVKLENEYA----LHRSI---VDHYNIPKTFDS-------DDLIPPYLDQYFYSHI 477
Query: 314 VRKLVPQRDTTLQAELRKQQNNETLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLED 373
L + + R F + ++E+++ S GS+ +
Sbjct: 478 GHHL---------KNIEHPERMTLFRMVFLDFR-----FLEQKIRH-DSTAWNASGSILN 522
Query: 374 QLHRLKEYEQGVYAYKPHIEELEK---------------------IHQAVQ--EGMIFEN 410
L +LK Y+ + P E L + A+ + IFE
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 411 RYTQ 414
+ Q
Sbjct: 583 AHKQ 586
Score = 61.0 bits (147), Expect = 7e-10
Identities = 90/611 (14%), Positives = 178/611 (29%), Gaps = 170/611 (27%)
Query: 4 LQSRQTDNSLSGVQKKLEEYRTYR----RKHKPPRVEQKA---KLETNFNTLQTKLRLSN 56
L + D+ + K T R K + QK L N+ L + ++
Sbjct: 46 LSKEEIDHII---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 57 RPAYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHL---AQKFKHKADI- 112
R M T + + + K + RL+ L + + ++
Sbjct: 103 RQPSMMTR-MYIEQRDRLYNDNQVFAKYN-------VSRLQPYLKLRQALLELRPAKNVL 154
Query: 113 -HEDWTRGKE----EMLQSSDFRQCKLNE----LKALKKKHEAFESDLAAHQDRVEQIAA 163
GK ++ S QCK++ L LK + E+ L Q + QI
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLN-LKNCNSP-ETVLEMLQKLLYQI-- 209
Query: 164 IAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRH--ALDEAEKILEKIDILHLEF 221
+ N D S N + RI L L + + + L +L ++
Sbjct: 210 ---DPNWTSRSDH-SSNIK-LRIHSIQAELRRLLKSKPYENCLL----VLL--NV----- 253
Query: 222 AKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATLGEADKEYNSIVNLVRE 281
+ F + + T K+ ++
Sbjct: 254 ---------Q----NAKAWNAF------------NLSCKILLT--TRFKQVTDFLSAATT 286
Query: 282 VESTVQQYQIPGGLENPYT-ALTANDLTKKWTDVRKLV----PQRDTTLQAELRKQQNNE 336
++ L +L L + D+ + V P+R + + +R +
Sbjct: 287 THISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR----DG 340
Query: 337 TLRRQFAEKANQVGPWIERQMDAVTSIGMGLQGSLEDQLHRLKEYEQGVYAYKPHIEELE 396
W D +T+I ++ SL L+ E Y+ + L
Sbjct: 341 LATWDN---------WKHVNCDKLTTI---IESSLNV----LEPAE-----YRKMFDRLS 379
Query: 397 KIHQAVQEGMIF-ENRYTQYTMETLRVGWEQLLTSINRNINEVENQILTRD-SKGITQEQ 454
+F + L + W ++ ++V ++ + + ++Q
Sbjct: 380 ----------VFPPS--AHIPTILLSLIWFDVIK------SDVM-VVVNKLHKYSLVEKQ 420
Query: 455 LNEFRASFN--HFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
E S + + +S + Y+I K + D + P
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSD-DL------IPPYLDQ 471
Query: 513 YV------HFDA-------------FLDF------MTRESTDTDTAEQVIDSFRILAGDK 547
Y H FLDF + +ST + + ++++ + L K
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 548 PYILPDELRRE 558
PYI ++ + E
Sbjct: 532 PYICDNDPKYE 542
Score = 53.3 bits (127), Expect = 2e-07
Identities = 52/349 (14%), Positives = 107/349 (30%), Gaps = 89/349 (25%)
Query: 258 HSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKL 317
H GE +Y I+++ ++ V + + P + L+ ++ +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSK-------EEIDHI 54
Query: 318 VPQRDTTLQAE-----LRKQQNNETLRRQFAEKANQVG-PWIERQMDAVTSIGMGLQGSL 371
+ +D L +Q ++F E+ ++ ++ + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 372 EDQLHRLKEYEQGVYAYK-PHIEELEKIHQAVQE----------GM-----------IFE 409
+Q RL Q Y ++ K+ QA+ E G+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 410 NRYTQYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFN-----H 464
+ Q M+ ++ W L N N E ++L + I + S N H
Sbjct: 173 SYKVQCKMD-FKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 465 FDKNRTGRL-APEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDF- 522
+ RL + +++CL+ L + V + ++AF +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL------L-----N------VQNAK-----AWNAF-NLS 265
Query: 523 -----MTRESTDTDTAEQVIDSFRILAGDKPYILP-DELRRELPPDQAE 565
TR TD L+ + D L PD+ +
Sbjct: 266 CKILLTTRFKQVTD----------FLSAATTTHISLDHHSMTLTPDEVK 304
Score = 34.4 bits (78), Expect = 0.12
Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 53/229 (23%)
Query: 3 WLQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRV-------EQKAKLETNFNTLQTKLRLS 55
W ++D + V KL +Y ++ K + E K KLE N L +
Sbjct: 396 WFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDH 452
Query: 56 -NRPAYMPTEGKMVSDIANAW--------KGLETSEK--SFEEWLLSEMMRLERLEHLAQ 104
N P ++ + + + K +E E+ F L L Q
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-------FRFLEQ 505
Query: 105 KFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAI 164
K +H + + LQ + K + +E V I
Sbjct: 506 KIRH-DSTAWNASGSILNTLQ--QLKFYK----PYICDNDPKYER-------LVNAI--- 548
Query: 165 AQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEK 213
L+ L + + ++ + + AL + +EA K +++
Sbjct: 549 ---LDFLPKIEENLICSKYTDLL----RI-ALMAEDEAIFEEAHKQVQR 589
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 71.6 bits (176), Expect = 2e-14
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
TQ Q+ EF+ +F D+++ G ++ + ++ SLG + E+ ++A +
Sbjct: 52 TQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQ---EL--DSMVA----EA 102
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRREL 559
G ++F FL TD + ++++F + + L+R L
Sbjct: 103 PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSL 151
Score = 43.5 bits (103), Expect = 6e-05
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+FN FD+ G+ E K L + G ++ + + + L+ + G +
Sbjct: 127 VIVNAFNLFDEG-DGKCKEETLKRSLTTWG-----EKFSQDEVDQALSEAPIDGNGLIDI 180
Query: 517 DAFLDFMTRESTDTD 531
F +T+ + +
Sbjct: 181 KKFAQILTKGAKEEG 195
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 69.9 bits (172), Expect = 2e-14
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+Q Q+ E + +F D++R G + E+ K SLG D E+ +L
Sbjct: 11 SQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDD---EL--NAMLKECP--- 62
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G ++F AFL + + TD + + ++F + D +I D L+
Sbjct: 63 -GQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKD 109
Score = 39.4 bits (93), Expect = 8e-04
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
R +F+ FD++ G + + K L ++G + K+ EI + + ++
Sbjct: 86 ALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKE---EIK--NVWKDAPLKN-KQFNY 139
Query: 517 DAFLDFMTR 525
+ +D +
Sbjct: 140 NKMVDIKGK 148
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 68.4 bits (168), Expect = 6e-14
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVV--DP 508
++QL EF+ +F FD+ G++ + + +LG + E+ ++L D
Sbjct: 5 NKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNA---EV--LKVLGNPKSDE 59
Query: 509 NSTGYVHFDAFLDFMTR--ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ V F+ FL + ++ T E ++ FR+ DK ++ ELR
Sbjct: 60 LKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVF--DKEGNGKVMGAELRH 111
Score = 44.9 bits (107), Expect = 1e-05
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
+L +K Q ++ F FDK G++ E + L +LG + ++ E++
Sbjct: 72 PMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEE---EVE-T 127
Query: 501 RILAVVDPNSTGYVHFDAFLDFMT 524
+ D N G ++++AFL +
Sbjct: 128 VLAGHEDSN--GCINYEAFLKHIL 149
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 67.9 bits (167), Expect = 7e-14
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
Q Q+ EF+ +FN D+NR G + E+ L S+G + + + + +++
Sbjct: 2 DQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDE---YL--EGMMSEAP--- 53
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
G ++F FL + TD + + ++F D+ +I D LR
Sbjct: 54 -GPINFTMFLTMFGEKLNGTDPEDVIRNAFACF--DEEASGFIHEDHLRE 100
Score = 45.6 bits (109), Expect = 4e-06
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
+ G E R +F FD+ +G + + + L ++G DR + +
Sbjct: 63 TMFGEKLNGTDPED--VIRNAFACFDEEASGFIHEDHLRELLTTMG-----DRFTDEEVD 115
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTR 525
+ + G ++ F +
Sbjct: 116 EMYREAPIDKKGNFNYVEFTRILKH 140
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 67.9 bits (167), Expect = 1e-13
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVD--P 508
++ ++F+ +F FD+ ++ + +LG + EI +IL
Sbjct: 3 SKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNA---EI--NKILGNPSKEE 57
Query: 509 NSTGYVHFDAFLDFMTR--ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ + F+ FL + + D T E ++ R+ DK ++ ELR
Sbjct: 58 MNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVF--DKEGNGTVMGAELRH 109
Score = 42.5 bits (101), Expect = 5e-05
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
+L + Q +F FDK G + E + L +LG ++ E + +
Sbjct: 70 PMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLG-----EKMTEEEVE 124
Query: 501 RILAVVDPNSTGYVHFDAFLDFMT 524
++ + +S G ++++AF+ +
Sbjct: 125 ELMKGQE-DSNGCINYEAFVKHIM 147
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 67.5 bits (166), Expect = 2e-13
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
Q+Q+ E + +F+ D +R G ++ E+ K+ LG + E+ +L
Sbjct: 13 PQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDK---EL--TAMLKEAP--- 64
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G ++F FL + + + TD+ E + ++F + + + + ++
Sbjct: 65 -GPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKD 111
Score = 40.6 bits (96), Expect = 3e-04
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
R +F FD+ T +L E K L ++G D + + + G +
Sbjct: 88 TIRNAFAMFDEQETKKLNIEYIKDLLENMG-----DNFNKDEMRMTFKEAPVEG-GKFDY 141
Query: 517 DAFLDFMTRESTD 529
F + +
Sbjct: 142 VKFTAMIKGSGEE 154
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 67.7 bits (166), Expect = 2e-13
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ + F D N G L+ E + L S+G + D RIL +D N
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIK-------KWDINRILQALDIN 85
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G + + F+ R + +F + D+ YI ++
Sbjct: 86 DRGNITYTEFMAGCYRWKNIES--TFLKAAFNKIDKDEDGYISKSDIVS 132
Score = 33.8 bits (78), Expect = 0.067
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 18/89 (20%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRI 502
K I L +A+FN DK+ G ++ + S + D
Sbjct: 98 GCYRWKNIESTFL---KAAFNKIDKDEDGYISKSDIVSLVHDKVLD-------NNDIDNF 147
Query: 503 LAVVDPNSTGY--------VHFDAFLDFM 523
V G + F F D+M
Sbjct: 148 FLSVHSIKKGIPREHIINKISFQEFKDYM 176
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 67.2 bits (165), Expect = 2e-13
Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+ ++ +F+ +F D+N G + ++ + ++G K+ + L + +
Sbjct: 20 DETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEE--------LDAMIKEA 71
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+G ++F FL + D + ++ +F++L D I L
Sbjct: 72 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVL--DPDGKGSIKKSFLEE 119
Score = 45.3 bits (108), Expect = 8e-06
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+F D + G + + L + G R + + + A P+ G V +
Sbjct: 96 VIMGAFKVLDPDGKGSIKKSFLEELLTTGG-----GRFTPEEIKNMWAAFPPDVAGNVDY 150
Query: 517 DAFLDFMTRESTDTD 531
+T
Sbjct: 151 KNICYVITHGEDAEG 165
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 64.4 bits (158), Expect = 2e-13
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+++EQ E + +F+ FD N+TG + E K + +LG+ + K EI ++ D
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKP---EI--LELMNEYDRE 55
Query: 510 STGYVHFDAFLDFMTRESTDTD 531
GY+ FD FLD MT + + D
Sbjct: 56 GNGYIGFDDFLDIMTEKIKNRD 77
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 67.2 bits (165), Expect = 3e-13
Identities = 27/128 (21%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 433 RNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD 492
+N+ + L ++ +++E++ + FN D +++G++ EE K+ L +G ++ +
Sbjct: 4 SAMNKFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKES 63
Query: 493 RQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---Y 549
EI ++ D +++G + + F+ T + + + +F DK Y
Sbjct: 64 ---EI--LDLMQAADVDNSGTIDYKEFIA-ATLHLNKIEREDHLFAAFTYF--DKDGSGY 115
Query: 550 ILPDELRR 557
I PDEL++
Sbjct: 116 ITPDELQQ 123
Score = 42.5 bits (101), Expect = 7e-05
Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
A+F +FDK+ +G + P+E + G ++ + ++ VD ++ G + +
Sbjct: 100 HLFAAFTYFDKDGSGYITPDELQQACEEFGVE-------DVRIEELMRDVDQDNDGRIDY 152
Query: 517 DAFLDFMTRES 527
+ F+ M + S
Sbjct: 153 NEFVAMMQKGS 163
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 65.2 bits (160), Expect = 7e-13
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+ ++ +F+ FD++ TGR+ L + G + EI ++
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLA---EIT------EIESTLPA 52
Query: 513 YVHFDAFLDFMTR--ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
V + FL + R E+ + F++ DK I ELR
Sbjct: 53 EVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVF--DKDATGMIGVGELRY 100
Score = 44.8 bits (107), Expect = 9e-06
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
Q+L R + EF F FDK+ TG + E + L SLG ++ +
Sbjct: 61 QVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLG-----EKLSNEEMD 115
Query: 501 RILAVVDPNSTGYVHFDAFLDFMT 524
+L V G V++ F+ +
Sbjct: 116 ELLKGVPVKD-GMVNYHDFVQMIL 138
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 66.5 bits (163), Expect = 7e-13
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
++N R F D + +G L+ +E L +GY D ++L +D N+
Sbjct: 52 CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQK-----IPPDIHQVLRDIDSNA 106
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+G +H+ FL + T E + F+ D I +EL+R
Sbjct: 107 SGQIHYTDFLAATIDKQTY-LKKEVCLIPFKFF--DIDGNGKISVEELKR 153
Score = 36.0 bits (84), Expect = 0.015
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
F FD + G+++ EE K + + +L VD N G + F
Sbjct: 130 VCLIPFKFFDIDGNGKISVEELKRIFGRDDIE---NPLIDKAIDSLLQEVDLNGDGEIDF 186
Query: 517 DAFLDFMTR 525
F+ M++
Sbjct: 187 HEFMLMMSK 195
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 65.2 bits (160), Expect = 8e-13
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
++ + F FDK+ G+++ EE S L SLG + E+ I ++
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNA---EL--NTIKGQLNAKEFD 56
Query: 513 YVHFDAFLDFMTRESTD-TDTAEQVIDSFRILAGDKP---YILPDELRR 557
F + T+ +++++D+FR L DK I ELR+
Sbjct: 57 ---LATFKTVYRKPIKTPTEQSKEMLDAFRAL--DKEGNGTIQEAELRQ 100
Score = 46.4 bits (111), Expect = 3e-06
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E +F DK G + E + L++LG D + + ++ V + G +++
Sbjct: 77 EMLDAFRALDKEGNGTIQEAELRQLLLNLG-----DALTSSEVEELMKEVSVSGDGAINY 131
Query: 517 DAFLDFMT 524
++F+D +
Sbjct: 132 ESFVDMLV 139
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 65.3 bits (160), Expect = 9e-13
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 14/113 (12%)
Query: 451 TQEQLNEFRASFNHFD--KNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
+Q+++++ + F FD R G + + LG + + ++ +
Sbjct: 4 SQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNE---DV--FAVGG-THK 57
Query: 509 NSTGYVHFDAFLDFMTRE-STDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ F+ FL + T +++F+ D+ +I ELR
Sbjct: 58 MGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTF--DREGQGFISGAELRH 108
Score = 41.8 bits (99), Expect = 1e-04
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN--STGYV 514
++ +F FD+ G ++ E + L +LG +R + D I+ + D G V
Sbjct: 85 DYMEAFKTFDREGQGFISGAELRHVLTALG-----ERLSDEDVDEIIKLTDLQEDLEGNV 139
Query: 515 HFDAFLDFMT 524
++ F+ +
Sbjct: 140 KYEDFVKKVM 149
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 63.0 bits (154), Expect = 1e-12
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 448 KGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVD 507
+++E + EF+A+F+ FD + G ++ +E + + LG + K+ + I+ VD
Sbjct: 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKE-----ELDAIIEEVD 66
Query: 508 PNSTGYVHFDAFLDFMTRESTDT 530
+ +G + F+ FL M R+ +
Sbjct: 67 EDGSGTIDFEEFLVMMVRQMKED 89
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 64.9 bits (159), Expect = 1e-12
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 451 TQEQLNEFRASFNHFDK-NRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ Q+ +F F+ +GR++ ++ L LG K I ++++ DP
Sbjct: 8 SSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKS---TI--RQLIDEFDPF 62
Query: 510 STGYVHFDAFLDFMTR----ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
G + FD+F R E +++ ++FR+ DK YI D +R
Sbjct: 63 GNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLY--DKEGNGYISTDVMRE 115
Score = 42.6 bits (101), Expect = 7e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E R +F +DK G ++ + + L L + D ++ +D + +G V F
Sbjct: 92 ELREAFRLYDKEGNGYISTDVMREILAELD-----ETLSSEDLDAMIDEIDADGSGTVDF 146
Query: 517 DAFLDFMT 524
+ F+ MT
Sbjct: 147 EEFMGVMT 154
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 64.5 bits (158), Expect = 1e-12
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 454 QLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGY 513
+ F FDK G +A + L ++GY+ + I A
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQ---LVQ-DIINADSSLRDASS 57
Query: 514 VHFDAFLDFMTRESTDTDTA-----EQVIDSFRILAGDKP---YILPDELRR 557
+ D + + D E + +F++ DK + +LR
Sbjct: 58 LTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVF--DKESTGKVSVGDLRY 107
Score = 49.1 bits (118), Expect = 3e-07
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 438 VENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEI 497
+E D+ + + +F +F FDK TG+++ + + L LG ++ +
Sbjct: 67 IEVNEKELDATTKAKTE--DFVKAFQVFDKESTGKVSVGDLRYMLTGLG-----EKLTDA 119
Query: 498 DFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
+ +L V+ +S G + + F++ + R+
Sbjct: 120 EVDELLKGVEVDSNGEIDYKKFIEDVLRQ 148
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 65.7 bits (161), Expect = 2e-12
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ + +++F D++ G + E+ K L G + +F +L +D +
Sbjct: 46 SNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKL------PYNFDLLLDQIDSD 99
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+G + + F+ + + + +FR+ D I EL
Sbjct: 100 GSGKIDYTEFIAAALDRKQLSK--KLIYCAFRVF--DVDNDGEITTAELAH 146
Score = 46.5 bits (111), Expect = 5e-06
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRI 502
D K ++++ + +F FD + G + E L + ++ +R+
Sbjct: 112 AALDRKQLSKKLI---YCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRM 168
Query: 503 LAVVDPNSTGYVHFDAFLDFM 523
+ VD N+ G + F F + M
Sbjct: 169 IRDVDKNNDGKIDFHEFSEMM 189
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 65.4 bits (160), Expect = 2e-12
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 435 INEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQ 494
+ ++ Q L+R + GI F D++ + L +EF+ L LG + +
Sbjct: 21 MEKLRAQCLSRGASGIQ-----GLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQA-- 73
Query: 495 GEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPD 553
+ + + D N +G + + FL + + + +F L + D
Sbjct: 74 ---EAEGVCRKWDRNGSGTLDLEEFLRALRPPMSQ-AREAVIAAAFAKLDRSGDGVVTVD 129
Query: 554 ELRR 557
+LR
Sbjct: 130 DLRG 133
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK--DRQGEIDFQRILAVVD 507
++Q + A+F D++ G + ++ + + + + + +R L D
Sbjct: 103 MSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFD 162
Query: 508 PNS-TGYVHFDAFLDFMTRESTDTDTAEQVID 538
+ G V F D+ + S +T E+ +
Sbjct: 163 SSEKDGQVTLAEFQDYYSGVSASMNTDEEFVA 194
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 64.1 bits (157), Expect = 2e-12
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 450 ITQEQLNEFRASFNHFDKN-RTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
+T+EQ NEF+A+F+ F G ++ +E + LG + + E+ Q ++ VD
Sbjct: 12 LTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPE---EL--QEMIDEVDE 66
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTA---EQVIDSFRILAGDKP---YILPDELRR 557
+ +G V FD FL M R D E++ D FR+ DK YI +EL+
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMF--DKNADGYIDLEELKI 119
Score = 43.7 bits (104), Expect = 3e-05
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E F FDKN G + EE K L + G + E D + ++ D N+ G + +
Sbjct: 96 ELSDLFRMFDKNADGYIDLEELKIMLQATG-----ETITEDDIEELMKDGDKNNDGRIDY 150
Query: 517 DAFLDFMT 524
D FL+FM
Sbjct: 151 DEFLEFMK 158
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 64.9 bits (159), Expect = 3e-12
Identities = 21/111 (18%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+++E++ + F D + +G + +E K L +G + + EI + ++ D +
Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES---EI--KDLMDAADID 58
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+G + + F+ + + E ++ +F DK YI DE+++
Sbjct: 59 KSGTIDYGEFIAATVHLN-KLEREENLVSAFSYF--DKDGSGYITLDEIQQ 106
Score = 46.1 bits (110), Expect = 6e-06
Identities = 13/93 (13%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
++F++FDK+ +G + +E + G +I ++ +D ++ G + +
Sbjct: 83 NLVSAFSYFDKDGSGYITLDEIQQACKDFGLD-------DIHIDDMIKEIDQDNDGQIDY 135
Query: 517 DAFLDFMTRESTDTDTAEQ-------VIDSFRI 542
F M + + + + D+ +
Sbjct: 136 GEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGL 168
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 63.4 bits (155), Expect = 4e-12
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 451 TQEQLNEFRASFNHFD--KNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
T++++ E R F+ FD R G + + L LG + + ++ +
Sbjct: 4 TKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEA---QV--HQHGG-TKK 57
Query: 509 NSTGYVHFDAFLDFMTR--ESTDTDTAEQVIDSFRILAGDKP---YILPDELRR 557
+ L A++ +++F+ D+ I E+R
Sbjct: 58 MGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTF--DREGQGLISSAEIRN 109
Score = 43.3 bits (103), Expect = 4e-05
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
I S T +EF +F FD+ G ++ E ++ L LG +R E
Sbjct: 70 PIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLG-----ERITEDQCN 124
Query: 501 RILAVVD--PNSTGYVHFDAFLDFMT 524
I D + G + ++ + +
Sbjct: 125 DIFTFCDIREDIDGNIKYEDLMKKVM 150
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 63.0 bits (154), Expect = 6e-12
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 452 QEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNST 511
+++ F D + +G L+ EEF S L L QR++ + D +
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQ--------QNPLVQRVIDIFDTDGN 52
Query: 512 GYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR--------ELPPD 562
G V F F++ +++ S D +++ +FRI DK YI EL + L
Sbjct: 53 GEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDT 112
Query: 563 QAEYCIQRM 571
Q + + +
Sbjct: 113 QLQQIVDKT 121
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+ R +F +D ++ G ++ E L + + KD Q + + + D + G + F
Sbjct: 76 KLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISF 135
Query: 517 DAFLDFMTR 525
+ F +
Sbjct: 136 EEFCAVVGG 144
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 64.1 bits (156), Expect = 2e-11
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEID-FQRILAVVDPN 509
+ ++F + HFD + +G L +E ++ + L + K + +
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR 70
Query: 510 STGYVHFDAFLDFMTREST--------DTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G + + E + E+ + ++R D +I +EL+
Sbjct: 71 DDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKN 127
Score = 57.6 bits (139), Expect = 2e-09
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK---DRQGEIDFQRILAVVDPNSTGY 513
EF ++ +D + +G + EE K+ L L K D + +L + D N+ G
Sbjct: 104 EFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGK 163
Query: 514 VHFDAFLDFMTRESTDT-------DTAEQVIDSFRILAGDKP-YILPDELRR 557
+ + + ++ +F + D YI +EL
Sbjct: 164 LELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDA 215
Score = 42.9 bits (101), Expect = 2e-04
Identities = 10/89 (11%), Positives = 27/89 (30%)
Query: 438 VENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEI 497
+ Q + EF +F +D++ G + E + L L ++
Sbjct: 173 LPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINN 232
Query: 498 DFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
++ + G ++ ++
Sbjct: 233 ISTYKKNIMALSDGGKLYRTDLALILSAG 261
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 59.6 bits (145), Expect = 2e-11
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
T + + + F FD N G+++ E L +L G E+ +R++A +D +
Sbjct: 6 TPQDIADRERIFKRFDTNGDGKISSSELGDALKTL----GSVTPDEV--RRMMAEIDTDG 59
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQV 536
G++ FD F DF ++
Sbjct: 60 DGFISFDEFTDFARANRGLVKDVSKI 85
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 61.9 bits (151), Expect = 3e-11
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQG------EIDFQ 500
SK T E+ E F D N G+L +E L G E +
Sbjct: 31 SKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVD 90
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
IL VD + GY+ + F+ + + E+++ +F+ D I +EL R
Sbjct: 91 HILQSVDFDRNGYIEYSEFVTVCMDKQ-LLLSRERLLAAFQQFDSDGSGKITNEELGR 147
Score = 36.5 bits (85), Expect = 0.011
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
A+F FD + +G++ EE + + ++L D N+ G V F
Sbjct: 124 RLLAAFQQFDSDGSGKITNEELGRLFGVTEVD-------DETWHQVLQECDKNNDGEVDF 176
Query: 517 DAFLDFMTR 525
+ F++ M +
Sbjct: 177 EEFVEMMQK 185
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 59.4 bits (144), Expect = 3e-11
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 437 EVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGE 496
++ + + F +FD +T ++ EEF++ + +
Sbjct: 5 ATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDE---- 60
Query: 497 IDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAE 534
F R+ + N+ G + + FL + E+ T A
Sbjct: 61 -QFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMAT 97
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 59.4 bits (144), Expect = 2e-10
Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 13/123 (10%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD----RQGEIDFQRI 502
++ L + + D G ++ E+++ V + + +F R+
Sbjct: 5 TESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRV 64
Query: 503 LAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILA--------GDKPYILPDE 554
+ + + T E+ + + L D Y+ E
Sbjct: 65 ADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDG-YVSLPE 123
Query: 555 LRR 557
+
Sbjct: 124 FKA 126
Score = 49.4 bits (118), Expect = 6e-07
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 10/147 (6%)
Query: 393 EELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVE-----NQILTRDS 447
E+ E I + + + T + +QL + I+ E L +
Sbjct: 34 EDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMK 93
Query: 448 KGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVD 507
+ + ++ D ++ G ++ EFK+ L ++G + D +D
Sbjct: 94 GEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDD-----KAITCFNTLD 148
Query: 508 PNSTGYVHFDAFLDFMTRESTDTDTAE 534
N G + D FL + +
Sbjct: 149 FNKNGQISRDEFLVTVNDFLFGLEETA 175
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 60.5 bits (146), Expect = 3e-10
Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 16/128 (12%)
Query: 446 DSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEID-----FQ 500
F + HFD + G + +E + + + + +
Sbjct: 1 SDSAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK 60
Query: 501 RILAVVDPNSTGYVHFDAFLDFM----------TRESTDTDTAEQVIDSFRILAGDKP-Y 549
++ D G + + + + R D + + + +R D Y
Sbjct: 61 SFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGY 120
Query: 550 ILPDELRR 557
I EL+
Sbjct: 121 ISAAELKN 128
Score = 46.6 bits (110), Expect = 1e-05
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 15/118 (12%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK---DRQGEIDFQRILAVVDPNSTGY 513
EF + +D + +G ++ E K+ L L K + + ++ + D N G
Sbjct: 105 EFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGR 164
Query: 514 VHFDAFLDFM-----------TRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
+ + + S+ + F + + E+ +
Sbjct: 165 LDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFV 222
Score = 38.5 bits (89), Expect = 0.003
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 421 RVGWEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKS 480
R+ L + N + + S+ + + F H+D +RTG L E
Sbjct: 164 RLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKI---FAHYDVSRTGALEGPEVDG 220
Query: 481 CLVSLGYSIGK---DRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMT 524
+ + + + + +L D N G + +
Sbjct: 221 FVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
Score = 28.9 bits (64), Expect = 4.7
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 441 QILTRDSKGITQEQLNEF-RASFNHFDKNRTGRLAPEEF-------KSCLVSLGYSIGKD 492
+ + K I +L+E+ A FDKN+ GRL + ++ L+
Sbjct: 132 DLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQ 191
Query: 493 RQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR--ESTDTDTAEQVIDSFR 541
+ + DF++I A D + TG + F+ E + +D FR
Sbjct: 192 VERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFR 242
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 57.2 bits (139), Expect = 4e-10
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 462 FNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLD 521
F D N G ++ EE K+ + + + Q I +D + G + + F
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQ---LL--QLIFKSIDADGNGEIDQNEFAK 60
Query: 522 FMTR--ESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
F +D + ++++ D + +E+
Sbjct: 61 FYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTS 99
Score = 40.2 bits (95), Expect = 3e-04
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+ + D + G+L EE S G + D N GY+
Sbjct: 76 GLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIE---------KVAEQVMKADANGDGYITL 126
Query: 517 DAFLDFM 523
+ FL+F
Sbjct: 127 EEFLEFS 133
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 55.3 bits (134), Expect = 5e-10
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIG-KDRQGEIDFQRILAVVDP 508
+ + E A+F D N G + E ++ +V+L + + +++ + D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 509 NSTGYVHFDAFLDFMTR 525
NS G + + FL+
Sbjct: 61 NSDGKISKEEFLNANAE 77
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 56.2 bits (136), Expect = 5e-10
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 433 RNINEVENQILTRD---SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSI 489
++E+ Q L S +L F+ + FD N G + K L LG
Sbjct: 6 ERLDEINKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGV-- 63
Query: 490 GKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+ ++ ++++ V S + FL M
Sbjct: 64 ---PKTHLELKKLIGEVSSGSGETFSYPDFLRMMLG 96
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 58.3 bits (141), Expect = 7e-10
Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 15/128 (11%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD----RQGEIDFQ 500
+ + + + L+ F+ FD + G++ +E + + + +
Sbjct: 25 FNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVR 84
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDS----------FRILAGDKP-Y 549
+ + +++ + E+ + + +L D
Sbjct: 85 VFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGT 144
Query: 550 ILPDELRR 557
+ DEL+
Sbjct: 145 VDVDELKT 152
Score = 44.0 bits (104), Expect = 4e-05
Identities = 8/80 (10%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
R+ +G + ++ D + G + +E K+ + + +
Sbjct: 117 RERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVP-------QEAAYTFFE 169
Query: 505 VVDPNSTGYVHFDAFLDFMT 524
D + +G + +
Sbjct: 170 KADTDKSGKLERTELVHLFR 189
Score = 29.0 bits (65), Expect = 3.5
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 452 QEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLG------YSIGKDRQGEIDFQRILAV 505
++ + R F H L E++ G+ + V
Sbjct: 77 EKMRDAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDV 136
Query: 506 VDPNSTGYVHFDAFLDFMTRESTDTDTAEQVID 538
+D + G V D M + A +
Sbjct: 137 LDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFE 169
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 56.9 bits (138), Expect = 1e-09
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 448 KGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVD 507
E F D + +G ++ E + L S G +++L + D
Sbjct: 19 SARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLA---TT--EKLLHMYD 73
Query: 508 PNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
N +G + FD F D + + FR + +E+R
Sbjct: 74 KNHSGEITFDEFKDLHHFI-------LSMREGFRKRDSSGDGRLDSNEVRA 117
Score = 51.9 bits (125), Expect = 7e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 455 LNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYV 514
+ R F D + GRL E ++ L+S GY + + FQ ++ D G +
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQ-----TFQALMRKFDRQRRGSL 146
Query: 515 HFDAFLDFMTRESTDTD 531
FD +++ +
Sbjct: 147 GFDDYVELSIFVCRVRN 163
Score = 27.6 bits (62), Expect = 9.8
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 454 QLNEFRASFNHFDKNRTGR--LAPEEFKSCLVSL 485
+ R F +D+ RTG+ + F VS+
Sbjct: 157 FVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSI 190
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 53.8 bits (130), Expect = 2e-09
Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ + E + +F FDK++ G ++ E + +++LG ++ + + ++++ D +
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLG-----EKLTDEEVEQMIKEADLD 57
Query: 510 STGYVHFDAFLDFMT--RESTDTDTAEQVIDSFR 541
G V+++ F+ M R + ++ F
Sbjct: 58 GDGQVNYEEFVKMMMTVRGGGGGNGWSRLRRKFS 91
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 55.5 bits (134), Expect = 3e-09
Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 22/141 (15%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD----------RQGEIDFQRI 502
E A F FD++ G + +F ++ G E +Q +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 503 LAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVI------DSFRILAGDKP-YILPDEL 555
+ D + + + F+ + D + + + D + +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 556 RR-----ELPPDQAEYCIQRM 571
R +P D A +
Sbjct: 121 ARALTAFGVPEDLARQAAAAL 141
Score = 42.8 bits (101), Expect = 6e-05
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 441 QILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ 500
+ L + A+ D + G + + L + G E +
Sbjct: 83 KRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVP-------EDLAR 135
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTR 525
+ A +D + G V + R
Sbjct: 136 QAAAALDTDGDGKVGETEIVPAFAR 160
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 2/119 (1%)
Query: 424 WEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLV 483
+ + E + + + ++ D++ R+ EEF + V
Sbjct: 23 RSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITREEFVTGAV 82
Query: 484 SLGYSIG--KDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSF 540
L V D + G V +T D A Q +
Sbjct: 83 KRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAAL 141
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 57.5 bits (139), Expect = 4e-09
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 25/155 (16%)
Query: 416 TMETLRVGWEQLLTSINRNINEVENQILTRDSKG------------ITQEQLNEFRASFN 463
E E + + + + +++E N R F
Sbjct: 70 ARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFL 129
Query: 464 HFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFM 523
+ +G+ + ++ K L +I E +++ +V+ ++ G + + +
Sbjct: 130 SSAVSGSGKFSFQDLKQVLAKYADTI-----PEGPLKKLFVMVENDTKGRMSYITLVAVA 184
Query: 524 TRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
++ FR + + + E R
Sbjct: 185 NDL-------AALVADFRKIDTNSNGTLSRKEFRE 212
Score = 49.8 bits (119), Expect = 1e-06
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 14/106 (13%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
L A F D N G L+ +EF+ V LG+ + + D + +
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK------KSVQDALFRYADEDESD 238
Query: 513 YVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
V F ++ + + DK + +E+++
Sbjct: 239 DVGFSEYVHLGLCL-------LVLRILYAFADFDKSGQLSKEEVQK 277
Score = 46.0 bits (109), Expect = 2e-05
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 454 QLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGY 513
L R + D +++G+L+ EE + L F+ +VVD + +
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHI----PESARKKFEHQFSVVDVDDSKS 306
Query: 514 VHFDAFLDFMTRESTD 529
+ + F+ + D
Sbjct: 307 LSYQEFVMLVLLMFHD 322
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 55.1 bits (133), Expect = 4e-09
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 23/144 (15%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD----------RQGEIDFQ 500
T + + F+ +D + G L +F+ + + GKD F
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQ-------VIDSFRILAGDKP-YILP 552
+ S G + + F+ + A V + + I
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 553 DELRR-----ELPPDQAEYCIQRM 571
DE + +A ++
Sbjct: 122 DEFAAWLTALGMSKAEAAEAFNQV 145
Score = 48.2 bits (115), Expect = 1e-06
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 414 QYTMETLRVGWEQLLTSINRN----------INEVENQILTRDSKGITQEQLNEFRASFN 463
Q ++ L I EN I + + +
Sbjct: 50 QTLKNAFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVG 109
Query: 464 HFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFM 523
DKN G++ +EF + L +LG S + + VD N G + D L +
Sbjct: 110 MCDKNADGQINADEFAAWLTALGMS-------KAEAAEAFNQVDTNGNGELSLDELLTAV 162
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 54.1 bits (130), Expect = 6e-09
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 425 EQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVS 484
E+ L INR + + E+L F+ + FD N G + K +
Sbjct: 23 ERRLAEINREFLCDQKYSDEENL----PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEK 78
Query: 485 LGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILA 544
LG + ++ +++++ V + + + F++ M + + + + +
Sbjct: 79 LGV-----PKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANES 133
Query: 545 GDKPYILP 552
KP P
Sbjct: 134 SPKPVGPP 141
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.6 bits (122), Expect = 2e-08
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 456 NEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVH 515
++ F FD N G+++ E L +L G E+ QR++A +D + G++
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTL----GSTSADEV--QRMMAEIDTDGDGFID 56
Query: 516 FDAFLDFMTRESTDTD 531
F+ F+ F
Sbjct: 57 FNEFISFCNANPGLMK 72
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+ F FDKN+ G+L+ +EF+ ++ ++ +I + +D + G ++
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQE---DIV--KFFEEIDVDGNGELNA 56
Query: 517 DAFLDFMTR 525
D F + +
Sbjct: 57 DEFTSCIEK 65
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 51.0 bits (123), Expect = 2e-08
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
++E++ + F D + +G + +E K L +G + + EI + ++ D +
Sbjct: 18 SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMES---EI--KDLMDAADIDK 72
Query: 511 TGYVHFDAFLDFM 523
+G + + F+
Sbjct: 73 SGTIDYGEFIAAT 85
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 432 NRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK 491
+ + + + L E+L R+ F D NR+GRL EEF++ L
Sbjct: 3 HHHHHSSGRENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVR--- 59
Query: 492 DRQGEIDFQRILAVVDPNSTGYVHFDAFLDFM 523
D + + +D + G + F F
Sbjct: 60 ----PADAEAVFQRLDADRDGAITFQEFARGF 87
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 53.2 bits (128), Expect = 3e-08
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 20/125 (16%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKS-----CLVSLGYSIGKDRQGEIDFQRILAV 505
+ + F+ D N G++ +E S L + + ++ ++ +
Sbjct: 15 NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRG 74
Query: 506 VDPNSTGYVHFDAFLDFMTRESTD----------TDTAEQVIDSFRILAGDKP---YILP 552
+ F FLD + +T T E F I DK I
Sbjct: 75 CGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIF--DKDGSGTITL 132
Query: 553 DELRR 557
DE +
Sbjct: 133 DEWKA 137
Score = 48.2 bits (115), Expect = 1e-06
Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 13/139 (9%)
Query: 396 EKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGITQEQL 455
K HQ E + + Q L + + + I +
Sbjct: 61 TKRHQVCVEAFFRGCG----MEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREW-- 114
Query: 456 NEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVH 515
A F+ FDK+ +G + +E+K+ G + D + D ++ G +
Sbjct: 115 --GDAVFDIFDKDGSGTITLDEWKAYGKISG-----ISPSQEDCEATFRHCDLDNAGDLD 167
Query: 516 FDAFLDFMTRESTDTDTAE 534
D D
Sbjct: 168 VDEMTRQHLGFWYTLDPEA 186
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 52.5 bits (126), Expect = 4e-08
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 16/129 (12%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEF-----KSCLVSLGYSIGKDRQGEIDF 499
S + + FN D N G+++ +E + +LG + + ++ +
Sbjct: 5 LTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAV 64
Query: 500 QRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDS----------FRILAGDKP- 548
+ + A+++ + +TD + F I+ D+
Sbjct: 65 EAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNG 124
Query: 549 YILPDELRR 557
I DE +
Sbjct: 125 AITLDEWKA 133
Score = 44.4 bits (105), Expect = 2e-05
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRI 502
L + +K A F+ DK++ G + +E+K+ + G Q D +
Sbjct: 96 LEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAG-----IIQSSEDCEET 150
Query: 503 LAVVDPNSTGYVHFDAFLDFMTRESTDTDTAE 534
V D + +G + D D A
Sbjct: 151 FRVCDIDESGQLDVDEMTRQHLGFWYTMDPAC 182
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 49.5 bits (119), Expect = 6e-08
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ Q+ E +F FD N G + +EFK + +G D + + + D +
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDA----EVEEAMKEADED 57
Query: 510 STGYVHFDAFLDFMTRESTDTDTA 533
G + F+D + + +
Sbjct: 58 GNGVIDIPEFMDLIKKSKNALKES 81
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 52.1 bits (125), Expect = 7e-08
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
R G +Q L F D+N+ G L+ + + + +L + D RI+
Sbjct: 18 RRETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGD--------RIIE 68
Query: 505 VVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELR 556
P+ + V F F+ + D + D + + ++L
Sbjct: 69 SFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKK---PEPLNSRRNKLH 117
Score = 44.0 bits (104), Expect = 4e-05
Identities = 16/104 (15%), Positives = 37/104 (35%)
Query: 428 LTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGY 487
+ + R + + + + + N+ +F +D +R G+++ E L +
Sbjct: 86 VLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVG 145
Query: 488 SIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTD 531
+ Q E R + D + G V F F + + +
Sbjct: 146 VQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQK 189
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo
sapiens}
Length = 26
Score = 47.5 bits (112), Expect = 7e-08
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 422 VGWEQLLTSINRNINEVENQILTR 445
VGWEQLLT+I R INEVENQILTR
Sbjct: 1 VGWEQLLTTIARTINEVENQILTR 24
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 49.2 bits (118), Expect = 9e-08
Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 430 SINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSI 489
+ + + EN K E+ E R +F DK+ G ++ E + + +LG
Sbjct: 5 HHHHHGSSGENLYFQSLMKDTDSEE--EIREAFRVEDKDGNGYISAAELRHVMTNLG--- 59
Query: 490 GKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
++ + + ++ D + G V+++ F+ MT +
Sbjct: 60 --EKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 94
Score = 29.2 bits (66), Expect = 0.93
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 516 FDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
L F + DTD+ E++ ++FR+ D YI ELR
Sbjct: 12 SGENLYFQSL-MKDTDSEEEIREAFRVEDKDGNGYISAAELRH 53
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 50.9 bits (122), Expect = 1e-07
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 20/139 (14%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD--------RQGEIDFQRI 502
+ + + + FN D ++ G + +F+S +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 503 LAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRIL--AGDKP---YILPDELRR 557
L V + F++ M + + V + A D I DE
Sbjct: 61 LTAVAGG--KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGI 118
Query: 558 -----ELPPDQAEYCIQRM 571
L A +
Sbjct: 119 FFGMLGLDKTMAPASFDAI 137
Score = 48.2 bits (115), Expect = 1e-06
Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 393 EELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLLTSINRN--------INEVENQILT 444
+ E + + + + + + M++L W+ LT++ IN ++ +
Sbjct: 26 MDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKN 85
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
++K + + L F D N ++ +E+ LG +
Sbjct: 86 PEAKSVVEGPL---PLFFRAVDTNEDNNISRDEYGIFFGMLGLD-------KTMAPASFD 135
Query: 505 VVDPNSTGYVHFDAFLDFM 523
+D N+ G + + F+
Sbjct: 136 AIDTNNDGLLSLEEFVIAG 154
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 53.6 bits (129), Expect = 1e-07
Identities = 31/122 (25%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKD---RQGEIDFQRILAVV 506
+QE+ E F H DKN G+L +E L Q E + IL
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 507 DPNSTGYVHFDAFLD-FMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRRELPPDQA 564
D + GY+ + F+ M R+S + + F+ D I DEL D
Sbjct: 400 DFDRNGYIDYSEFVTVAMDRKSLLSKDKLESA--FQKFDQDGNGKISVDELASVFGLDHL 457
Query: 565 EY 566
E
Sbjct: 458 ES 459
Score = 46.2 bits (110), Expect = 2e-05
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
++ ++F FD++ G+++ +E S G D ++ +++ +D N+ G
Sbjct: 423 LSKDKLESAFQKFDQDGNGKISVDELASVF-------GLDHLESKTWKEMISGIDSNNDG 475
Query: 513 YVHFDAFLDFMTRESTDTD 531
V F+ F + + ++ +
Sbjct: 476 DVDFEEFCKMIQKLCSNNE 494
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 51.4 bits (123), Expect = 1e-07
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 27/148 (18%)
Query: 450 ITQEQLNEFRASFN-HFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGE----------ID 498
++ Q N+ FN +D N G + ++F+ + + G+ +
Sbjct: 6 LSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLI 65
Query: 499 FQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILA----------GDKP 548
+ + D N V + +L + E + + GD
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDN- 124
Query: 549 YILPDELRR-----ELPPDQAEYCIQRM 571
I E +P + +
Sbjct: 125 IIDKHEYSTVYMSYGIPKSDCDAAFDTL 152
Score = 42.5 bits (100), Expect = 1e-04
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 421 RVGWEQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKS 480
+V E+ L + VE + + + F+ D + + E+ +
Sbjct: 80 QVTKEEWLKMWAECVKSVEKG------ESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYST 133
Query: 481 CLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+S G + D + V + F T
Sbjct: 134 VYMSYGIP-------KSDCDAAFDTLSDGGKTMVTREIFARLWTE 171
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 49.9 bits (119), Expect = 2e-07
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+L F+ + FD N G + K L LG + ++ +R++ V S
Sbjct: 43 LPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLG-----VPKTHLELKRLIREVSSGS 97
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSF 540
+ FL M + + + +
Sbjct: 98 EETFSYSDFLRMMLGKRSAILRMILMYEEK 127
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 452 QEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNST 511
+ L + + +F FD++ G + +E + + LG + + ++ D +
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLG-----QPLPQEELDAMIREADVDQD 56
Query: 512 GYVHFDAFLDFMTRE 526
G V+++ F + +E
Sbjct: 57 GRVNYEEFARMLAQE 71
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 49.9 bits (120), Expect = 3e-07
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 455 LNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYV 514
+ +++ F +D++ +G + E K L GY + ++ D G +
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ-----FHDILIRKFDRQGRGQI 127
Query: 515 HFDAFLDFMTRESTDTDT 532
FD F+ TD
Sbjct: 128 AFDDFIQGCIVLQRLTDI 145
Score = 46.5 bits (111), Expect = 4e-06
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 12/106 (11%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+ F DK+R+G ++ E + L + ++ + + I+++ D +
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPV--TV--RSIISMFDRENKA 59
Query: 513 YVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
V+F F + FR D I +EL++
Sbjct: 60 GVNFSEFTGVWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQ 98
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 52.4 bits (126), Expect = 4e-07
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 4/215 (1%)
Query: 4 LQSRQTDNSLSGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPT 63
L+SR +S+ VQ + ++ Y++ KPP+ ++ ++LE +N+LQTKLRL R ++
Sbjct: 781 LESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAP 840
Query: 64 EGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEM 123
G ++I + W LE +E+ E L E+ R +++ L QK+ E+W K
Sbjct: 841 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 900
Query: 124 LQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVE-QIAAIAQELNTLEYHDSVSVNAR 182
L S++ + ++A K EAF+ + + + + + +I +L L Y+ + R
Sbjct: 901 LGSNETGD-SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 959
Query: 183 CQRICDQWDHLGALTQQRRHALDEAEKILEKIDIL 217
Q + + LE++ +
Sbjct: 960 KDTFFAQ--QWTGVKSSAETYKNTLLAELERLQKI 992
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 50.9 bits (122), Expect = 7e-07
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQG---EIDFQRILAVVD 507
T E+ E F DKN G+L +E L + + E + IL VD
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD 409
Query: 508 PNSTGYVHFDAFLD-FMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
+ GY+ + F+ M ++ ++ + F + DK I +EL
Sbjct: 410 FDKNGYIEYSEFISVCMDKQILFSEERLRRA--FNLFDTDKSGKITKEELANLF 461
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 459 RASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDA 518
R +FN FD +++G++ EE + G E + +L D N + FD
Sbjct: 438 RRAFNLFDTDKSGKITKEELANLF-------GLTSISEKTWNDVLGEADQNKDNMIDFDE 490
Query: 519 FLDFMTR 525
F+ M +
Sbjct: 491 FVSMMHK 497
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQG---------EIDFQR 501
T ++ + F D N G L +E G D E
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDS 385
Query: 502 ILAVVDPNSTGYVHFDAFLD-FMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
++ ++D + +G + + F+ + R + E++ +F++ D I EL +
Sbjct: 386 LMPLLDMDGSGSIEYSEFIASAIDRTILLSR--ERMERAFKMFDKDGSGKISTKELFKLF 443
Query: 560 PPDQAEY 566
+
Sbjct: 444 SQADSSI 450
Score = 42.7 bits (101), Expect = 3e-04
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+F FDK+ +G+++ +E SI + + + I+ VD N G
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQME-----ELESIIEQVDNNKDG 468
Query: 513 YVHFDAFLDFM 523
V F+ F++ +
Sbjct: 469 EVDFNEFVEML 479
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 50.5 bits (121), Expect = 1e-06
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQG------EIDFQRIL 503
+Q++ E A F+ DKN G+L E L G+D E + ++L
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 504 AVVDPNSTGYVHFDAFLD-FMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
VD + GY+ + F+ M R++ + E++ +FR+ D I EL
Sbjct: 389 DAVDFDKNGYIEYSEFVTVAMDRKTLLSR--ERLERAFRMFDSDNSGKISSTELATIF 444
Score = 43.5 bits (103), Expect = 2e-04
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+F FD + +G+++ E + G ++ +L+ VD N+ G
Sbjct: 415 LSRERLERAFRMFDSDNSGKISSTELATIF-------GVSDVDSETWKSVLSEVDKNNDG 467
Query: 513 YVHFDAFLDFMTR 525
V FD F + +
Sbjct: 468 EVDFDEFQQMLLK 480
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 49.0 bits (117), Expect = 1e-06
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 455 LNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYV 514
+ F + R+G L P E L LG+ I +L + +
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYI------NQRTSLLLHRLFARGMAFC 169
Query: 515 HFDAFLDFMTR 525
+ ++
Sbjct: 170 DLNCWIAICAF 180
Score = 46.7 bits (111), Expect = 5e-06
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
I +Q F D++R+G L E G + R++ + D
Sbjct: 44 TIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQ---TA--LRMMRIFDT 98
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
+ G++ F F+ E + F + A + + P E+ L
Sbjct: 99 DFNGHISFYEFMAMYKFM-------ELAYNLFVMNARARSGTLEPHEILPAL 143
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 46.9 bits (112), Expect = 1e-06
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 496 EIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGD-KPYILPDE 554
E + +L + ++ L M + + ++ F +LA + I +
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAES 61
Query: 555 LRR 557
LRR
Sbjct: 62 LRR 64
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E F+ + E + LG + + D Q ++ D + G ++
Sbjct: 41 ELCKGFSLLADPERHLITAESLRRNSGILGI----EGMSKEDAQGMVREGDLDGDGALNQ 96
Query: 517 DAFLDFMTRES 527
F M R S
Sbjct: 97 TEFCVLMVRLS 107
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 47.4 bits (113), Expect = 2e-06
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 24/95 (25%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK----------DRQGEIDFQR- 501
LN ++ +F D++ +G + E + + +GY + + G I F
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDY 126
Query: 502 ILAVV------------DPNSTGYVHFDAFLDFMT 524
+ V D G +F + DF+
Sbjct: 127 VACCVKLRALTDFFRKRDHLQQGSANFI-YDDFLQ 160
Score = 28.9 bits (65), Expect = 2.9
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 463 NHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDF 522
D++ TG++ FK +L ++ VD + +G V
Sbjct: 47 AMLDRDHTGKMGFNAFKELWAAL-----------NAWKENFMTVDQDGSGTVEHHELRQA 95
Query: 523 MT 524
+
Sbjct: 96 IG 97
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 47.4 bits (113), Expect = 2e-06
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 453 EQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTG 512
+ +++A + FD +R+G + E + G+ + + ++ + G
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE------HLYSMIIRRYSDEGG 127
Query: 513 YVHFDAFLDFMTRESTDTDT 532
+ FD F+ + R
Sbjct: 128 NMDFDNFISCLVRLDAMFRA 147
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 47.2 bits (112), Expect = 3e-06
Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 27/149 (18%)
Query: 449 GITQEQLNEFRASFNHF-DKNRTGRLAPEEFKSCLVSL----GYSIGKDRQGEI------ 497
G+ Q + + +F+ F D N G + +F+ + S+ +
Sbjct: 1 GLNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLED 60
Query: 498 DFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILA----------GDK 547
+++ + D N V ++ +L + + + + GD
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 548 PYILPDELRR-----ELPPDQAEYCIQRM 571
+ +E + +L +
Sbjct: 121 -IVDLEEFQNYCKNFQLQCADVPAVYNVI 148
Score = 43.8 bits (103), Expect = 3e-05
Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 7/90 (7%)
Query: 444 TRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRIL 503
+ + N F D + G + EEF++ + D +
Sbjct: 93 CKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQ-------CADVPAVY 145
Query: 504 AVVDPNSTGYVHFDAFLDFMTRESTDTDTA 533
V+ + + + R T
Sbjct: 146 NVITDGGKVTFDLNRYKELYYRLLTSPAAD 175
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 47.5 bits (113), Expect = 3e-06
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 454 QLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK----------DRQGEIDFQR-I 502
LN +R F FD +R+G + P+E + L ++G+ + G+I F I
Sbjct: 101 VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYI 160
Query: 503 LAVV------------DPNSTGYVHFDAFLDFMT 524
V D G V+F + DF+
Sbjct: 161 ACCVKLRALTDSFRRRDTAQQGVVNFP-YDDFIQ 193
Score = 30.5 bits (69), Expect = 0.96
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 435 INEVE-NQILTRDSKGITQEQLN--EFRASFNHFDKNRTGRLAPEEFKSCLVSLGY---- 487
I+ E + LT+ + N R + D++ +G + EFK L
Sbjct: 49 IDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQH 108
Query: 488 --SIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
S DR G +D Q + + + G+ ++ + +
Sbjct: 109 FISFDTDRSGTVDPQELQKAL--TTMGFRLSPQAVNSIAKR 147
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 47.6 bits (113), Expect = 3e-06
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 442 ILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLV-SLGYSIGKDRQGEIDFQ 500
I + T E F FDKN TG+L +E S + L R +I +
Sbjct: 34 IRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKR 93
Query: 501 ----RILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP---YILPD 553
+ G F FL+F ++ F + D + +
Sbjct: 94 AFDKSRTLGSKLENKGSEDFVEFLEFRLMLC-YIYDFFELTVMFDEI--DASGNMLVDEE 150
Query: 554 ELRR 557
E +R
Sbjct: 151 EFKR 154
Score = 46.8 bits (111), Expect = 5e-06
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
E F+ D + + EEFK + L + E D + +D N TG V F
Sbjct: 131 ELTVMFDEIDASGNMLVDEEEFKRAVPKLE---AWGAKVE-DPAALFKELDKNGTGSVTF 186
Query: 517 DAFLDFMTRESTDTD 531
D F + + D D
Sbjct: 187 DEFAAWASAVKLDAD 201
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 44.6 bits (106), Expect = 5e-06
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G+++ ++ + F D +++G L +E K L + + E + ++ D
Sbjct: 34 GLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET--KSLMDAADN 91
Query: 509 NSTGYVHFDAFLDFMT 524
+ G + D F + +
Sbjct: 92 DGDGKIGADEFQEMVH 107
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 44.2 bits (105), Expect = 8e-06
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G++++ ++ + F D +++G + +E K L E LA D
Sbjct: 34 GMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETK--TFLAAADH 91
Query: 509 NSTGYVHFDAFLDFMT 524
+ G + + F + +
Sbjct: 92 DGDGKIGAEEFQEMVQ 107
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 45.9 bits (109), Expect = 1e-05
Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 33/147 (22%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G + Q+ + F DK G L+ E+F+ + + G RI+
Sbjct: 22 GFSHSQITRLYSRFTSLDKGENGTLSREDFQR-----IPELAINPLG----DRIINAFFS 72
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP----------------YILP 552
V+F F+ + D + + + I
Sbjct: 73 EGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISR 132
Query: 553 DELRR--------ELPPDQAEYCIQRM 571
DEL + + +Q R
Sbjct: 133 DELLQVLRMMVGVNISDEQLGSIADRT 159
Score = 37.8 bits (88), Expect = 0.004
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 456 NEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVH 515
N+ +F +D ++ +++ +E L + D Q R + D + +
Sbjct: 113 NKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAIS 172
Query: 516 FDAFLDFMTRES 527
F F+ + +
Sbjct: 173 FTEFVKVLEKVD 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 94/568 (16%), Positives = 160/568 (28%), Gaps = 209/568 (36%)
Query: 79 ETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIH---------EDWTRGKEEMLQSSDF 129
+ F++ +L+ L + DIH D T K + L +
Sbjct: 74 PSKVGQFDQ-VLNLC-----LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 130 RQCKLNELKALKKKHEAFESDL--AAHQDRVEQIAAI--AQ--------ELNTLEYHDSV 177
+ + + KK S L A + Q+ AI Q EL L Y
Sbjct: 128 TARIMAK-RPFDKKS---NSALFRAVGEGNA-QLVAIFGGQGNTDDYFEELRDL-YQTYH 181
Query: 178 SVNARCQRICDQWDHLGALTQQRRHALDEAEKILEK-IDILH-LEFAKRA--------AP 227
+ + + L L + +AEK+ + ++IL LE P
Sbjct: 182 VLVGDLIKFSAE--TLSELIRTT----LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 228 FN----------------NWLDGTREDLVDMF---IVHTMEEIQGLIDAHSQFKATLGEA 268
+ L T +L H+ QGL+ A A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS----QGLVTA--VAIAETDSW 289
Query: 269 DKEYNSIVNLVR----------------EVESTVQQYQIPGGLENPYTALTANDLTKKWT 312
+ + S+ + + ++ + + P L+ ++LT++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE-- 347
Query: 313 DVRKLVPQRDTTLQAE------LRKQQNNETLRRQFAEKANQV--GPWIERQMDAVTSIG 364
V+ V + ++ L A L N + V GP S
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLV---NG---AKNL------VVSGP--------PQS-- 385
Query: 365 MGLQGSLEDQLHRLK---EYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLR 421
L G L L + K +Q + P E K+ F NR+ L
Sbjct: 386 --LYG-LNLTLRKAKAPSGLDQ---SRIPFSE--RKL--------KFSNRF-------LP 422
Query: 422 VGW---EQLLTSINRNINEVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEF 478
V LL + IN+ L +++ + + P
Sbjct: 423 VASPFHSHLLVPASDLINKD----LVKNNVSFNAKDIQ-----------------IP--- 458
Query: 479 KSCLVSLGYSI--GKDRQGEIDFQRILAVVDPNSTGYVHFDA--------FLDF------ 522
V Y G D + + +VD V ++ LDF
Sbjct: 459 ----V---YDTFDGSDLR-VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 523 ----MTRESTDTDTAEQVIDSFRILAGD 546
+T + D T +V I+AG
Sbjct: 511 GLGVLTHRNKD-GTGVRV-----IVAGT 532
Score = 44.7 bits (105), Expect = 1e-04
Identities = 40/173 (23%), Positives = 60/173 (34%), Gaps = 44/173 (25%)
Query: 260 QFKATLGEA------DKEYNSIVNLV--------REVE-STVQQYQ-----IPGGLENPY 299
QF L E D E + LV VE S V Q+ EN Y
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 300 TALTANDLTKKWTDVRKLVPQRDTTLQAELRKQQN----NETLRRQFAEKANQVGPWIER 355
L ND+ KL+ + DTTL +N +R F +K+N
Sbjct: 96 --LEGNDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SALFRA 148
Query: 356 QMDAVTSI----GMGLQGSLEDQLHRLKE-YEQGVYAYKPHIEELEKIHQAVQ 403
+ + G G QG+ +D L++ Y+ Y + +L I + +
Sbjct: 149 VGEGNAQLVAIFG-G-QGNTDDYFEELRDLYQ----TYHVLVGDL--IKFSAE 193
Score = 40.8 bits (95), Expect = 0.001
Identities = 94/609 (15%), Positives = 167/609 (27%), Gaps = 230/609 (37%)
Query: 45 FNTLQTKLR---LSNRPAYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMRLERLEH 101
F Q L+ P PTEG D E + + E L+ + L +
Sbjct: 28 FIASQ--LQEQFNKILPE--PTEGFAADD--------EPT--TPAE-LVGKF-----LGY 67
Query: 102 LAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQI 161
++ E + F Q L FE+ D I
Sbjct: 68 VSSL---------------VEPSKVGQFDQV-------LNLCLTEFENCYLEGND----I 101
Query: 162 AAIAQELNTLE-------------YHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAE 208
A+A +L Y + + R ++ AL A
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKR------------PFDKKSNSALFRAV 149
Query: 209 KILEKIDILHLEFAKRAAPF------NNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFK 262
A+ A F +++ + +L D++ + + LI ++
Sbjct: 150 GE---------GNAQLVAIFGGQGNTDDYFE----ELRDLYQTYH-VLVGDLIKFSAE-- 193
Query: 263 ATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRD 322
TL E L+R + + GL ++ +W + P +D
Sbjct: 194 -TLSE----------LIRTTLDAEKVF--TQGL----------NI-LEWLENPSNTPDKD 229
Query: 323 TTLQAELRKQQNNETLRRQFAEKANQVGPWIE-RQMD--AVTSIGMGLQ-GSLEDQLHRL 378
L + P I Q+ VT+ +G G L L
Sbjct: 230 YLLSIPIS-------------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 379 KEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQY--TMETL-RVGWE-QLLTSINRN 434
+ QG+ A+ E +E+ + + L +G
Sbjct: 271 TGHSQGLVT-----------AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-- 317
Query: 435 INEVENQILTRDS--------------KGITQEQLNEFRASFN-HFDKNRTGRLA----P 475
+ IL DS +TQEQ+ ++ N H + ++
Sbjct: 318 --SLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 476 EEF------KSCLVSLGYSI-------GKDRQGEIDF-QRILAVV---DPNSTGYVHFDA 518
+ +S L L ++ G D Q I F +R L P ++ + H
Sbjct: 375 KNLVVSGPPQS-LYGLNLTLRKAKAPSGLD-QSRIPFSERKLKFSNRFLPVASPF-H-SH 430
Query: 519 FLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELR------------RELPPDQAE- 565
L ++ + L + +++ R L +E
Sbjct: 431 LL---------VPASDLINKD---LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 566 --YCIQRMP 572
CI R+P
Sbjct: 479 IVDCIIRLP 487
Score = 40.8 bits (95), Expect = 0.002
Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 74/222 (33%)
Query: 163 AIAQELNTLEYHDSVSVNARCQRICDQWD-HLGALTQQRRHALDEAEKILEKIDILHL-E 220
I + + + + V + ++I + + H + T +EK +L +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-------FRSEK-----GLLSATQ 1730
Query: 221 FAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDA------HSQFKATLGEADKEYNS 274
F + A L++ ++ +GLI A HS LGE
Sbjct: 1731 FTQPAL-T----------LMEKAAFEDLKS-KGLIPADATFAGHS-----LGE------- 1766
Query: 275 IVNLVREVESTVQQYQIPGGLENPYTAL--TANDLTKKWTDVRKLVPQRDTTLQAELRKQ 332
Y AL A+ ++ + ++V R T+Q + +
Sbjct: 1767 ------------------------YAALASLADVMS--IESLVEVVFYRGMTMQVAVPRD 1800
Query: 333 QNNETLRRQFAEKANQVGPWIERQM--DAVTSIGMGLQGSLE 372
+ + A +V ++ V +G +E
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Score = 37.3 bits (86), Expect = 0.018
Identities = 48/285 (16%), Positives = 80/285 (28%), Gaps = 105/285 (36%)
Query: 15 GVQKK---LEEYRTY---RR------KHKPPR--------VEQKAKLETNFNTLQTKLRL 54
G Q++ ++ Y+T + H V T + R+
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 55 SNRPAYM------PTEGKMVSDIANAWKGLETSEKSFE--EWLLSE-------MMRLER- 98
R Y +GK+ ++ ++ +F + LLS + +E+
Sbjct: 1685 --RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 99 -LEHLAQKFKHKADI----H-----------------ED-----WTRGK-------EEML 124
E L K AD H E + RG + L
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 125 QSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSV---NA 181
S++ +N + A Q VE++ L V + N
Sbjct: 1803 GRSNYGMIAINPGRVAAS------FSQEALQYVVERVGKRTGWL--------VEIVNYNV 1848
Query: 182 R-CQRICDQWDHLGALTQQRRHALDEAEKILE-----KIDILHLE 220
Q + G L ALD +L KIDI+ L+
Sbjct: 1849 ENQQYVAA-----GDL-----RALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 34.6 bits (79), Expect = 0.11
Identities = 35/158 (22%), Positives = 53/158 (33%), Gaps = 48/158 (30%)
Query: 362 SIGMGLQ-----GSLEDQLHRLKEYEQGVYAYKPHIEELEK-------IHQAVQEG-MIF 408
GMG+ + +D +R + + Y + I ++ IH ++G I
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 409 ENRYTQYTMETLRVGWEQLLTSINRNINEVENQILTRDSKGI------TQEQLNEFRASF 462
EN Y+ ET+ G + I + INE R KG+ TQ A
Sbjct: 1686 EN-YSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQ------PALT 1737
Query: 463 NHFDKNRTGRLAP-EEFKS-------CLV---SLG-YS 488
A E+ KS SLG Y+
Sbjct: 1738 -------LMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 42.4 bits (100), Expect = 3e-05
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 21/112 (18%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
++ + ++ F DK+ G ++ E + + G I ++ D
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLP-------STLLAHIWSLCDTK 56
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRRELPP 561
G + D F +I I D P++L E+ +PP
Sbjct: 57 DCGKLSKDQFALAF-----------HLISQKLIKGIDPPHVLTPEM---IPP 94
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 43.5 bits (103), Expect = 4e-05
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 454 QLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK----------DRQGEIDFQR-I 502
LN +R F FD +R+G + P+E + L ++G+ + G+I F I
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYI 129
Query: 503 LAVV------------DPNSTGYVHFDAFLDFMT 524
V D G V+F + DF+
Sbjct: 130 ACCVKLRALTDSFRRRDSAQQGMVNFS-YDDFIQ 162
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 441 QILTRDSKGITQEQLN--EFRASFNHFDKNRTGRLAPEEFKSCLVSLG------YSIGKD 492
+ LT+ + N R + D++ +G + EFK L S D
Sbjct: 25 RCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDSD 84
Query: 493 RQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRE 526
R G +D Q + + + G+ ++ + +
Sbjct: 85 RSGTVDPQELQKAL--TTMGFRLNPQTVNSIAKR 116
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 41.1 bits (97), Expect = 4e-05
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 457 EFRASFNHFDKNR--TGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYV 514
E + +F F +++ EE K + +LG S+ K +D ++ VD N G V
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKG-MSTLD--EMIEEVDKNGDGEV 62
Query: 515 HFDAFLDFMTRES 527
F+ FL M + S
Sbjct: 63 SFEEFLVMMKKIS 75
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 459 RASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDA 518
A F D N G ++ EE K+ + E Q I +D + G + +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIK-----NEQLLQLIFKSIDADGNGEIDQNE 57
Query: 519 FLDFMT 524
F F
Sbjct: 58 FAKFYG 63
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 41.5 bits (98), Expect = 7e-05
Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G+ ++ ++ + F+ DK+++G + +E S L + + ++A D
Sbjct: 34 GLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSS--DARDLSAKETKTLMAAGDK 91
Query: 509 NSTGYVHFDAFLDFMTR 525
+ G + + F +
Sbjct: 92 DGDGKIGVEEFSTLVAE 108
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 41.0 bits (97), Expect = 1e-04
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 457 EFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHF 516
+ + F DK+++G + EE K L E +LA D + G +
Sbjct: 42 QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETK--ALLAAGDSDHDGKIGA 99
Query: 517 DAFLDFMTR 525
D F + +
Sbjct: 100 DEFAKMVAQ 108
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 41.1 bits (97), Expect = 1e-04
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G++ + ++ + F D++++G + EE + L + S E LA D
Sbjct: 35 GLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETK--AFLAAGDT 92
Query: 509 NSTGYVHFDAFLDFMT 524
+ G + + F +
Sbjct: 93 DGDGKIGVEEFQSLVK 108
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 40.5 bits (95), Expect = 1e-04
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 24/113 (21%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ Q ++R FN DK +G L + ++ L+ + I + D +
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLP-------QAQLASIWNLSDID 60
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK-PYILPDELRRELPP 561
G + + F+ M +ID ++G P +LP E +PP
Sbjct: 61 QDGKLTAEEFILAM-----------HLID--VAMSGQPLPPVLPPEY---IPP 97
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 43.7 bits (102), Expect = 1e-04
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 9/108 (8%)
Query: 458 FRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFD 517
+ DKN+ ++ +E K L L + ++I D + T + +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGY-----ARKIFRECDHSQTDSLEDE 67
Query: 518 AFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRRELPPDQAE 565
F + + + +F AG + + L L Q E
Sbjct: 68 EIETFYKMLTQRAE----IDRAFEEAAGSAETLSVERLVTFLQHQQRE 111
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 456 NEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVH 515
N+ + F D + +G + EE K L S E L D + G +
Sbjct: 42 NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETK--AFLKAADKDGDGKIG 99
Query: 516 FDAFLDFMT 524
D F +
Sbjct: 100 IDEFETLVH 108
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G+ + L++ + +F D++++G + +E K L + S E LA D
Sbjct: 34 GLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK--AFLADGDK 91
Query: 509 NSTGYVHFDAFLDFMT 524
+ G + D F +
Sbjct: 92 DGDGMIGVDEFAAMIK 107
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 40.9 bits (96), Expect = 4e-04
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 445 RDSKGITQEQLNEFRASFNHF-DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRIL 503
++ + + + + F ++ +G L EFK + +
Sbjct: 11 EENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEA-----TQYVEAMF 65
Query: 504 AVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
D N + F ++ + T ++ +F+I D+ I EL
Sbjct: 66 RAFDTNGDNTIDFLEYVAALNLVLRGTLE-HKLKWTFKIYDKDRNGCIDRQELLD 119
Score = 33.6 bits (77), Expect = 0.097
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ-- 500
L +G + +L + +F +DK+R G + +E + S+ Q
Sbjct: 85 LNLVLRGTLEHKL---KWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQG 141
Query: 501 ----------RILAVVDPNSTGYVHFDAFLDFMTR 525
RI +VD N G + + F++ R
Sbjct: 142 KLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 40.6 bits (95), Expect = 6e-04
Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF-QR 501
+ + +++L + F +D + G + E +++ G+ +F
Sbjct: 83 VNLIMQEKMEQKL---KWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINL 139
Query: 502 ILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPD-ELRRELP 560
+ +D N+ G + + F++ M ++ + + D +L PD E
Sbjct: 140 VFHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGKQPDMETDSSKS 199
Query: 561 PDQA 564
PD+A
Sbjct: 200 PDKA 203
Score = 38.6 bits (90), Expect = 0.002
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 8/120 (6%)
Query: 439 ENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEID 498
+ + D K + ++ + + +F + G EFK+ L G +
Sbjct: 5 NGKSIAGDQKAVPTQETHVWYRTFMMEYPS--GLQTLHEFKTLLGLQGLNQKA----NKH 58
Query: 499 FQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
++ D N G+V F F+ + + +++ F++ D I +EL
Sbjct: 59 IDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKME-QKLKWYFKLYDADGNGSIDKNELLD 117
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 40.1 bits (94), Expect = 7e-04
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 20/135 (14%)
Query: 451 TQEQLNEFRASFNHFDKNRT--GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
T E++ F + G + EEF+ L RI V D
Sbjct: 32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFAD------RIFDVFDV 85
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR---------- 557
G + F F+ + E+V +F++ + +I +EL+
Sbjct: 86 KRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESE 145
Query: 558 -ELPPDQAEYCIQRM 571
L D E + +
Sbjct: 146 LVLSEDMIEVMVDKA 160
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 40.9 bits (95), Expect = 0.001
Identities = 36/246 (14%), Positives = 75/246 (30%), Gaps = 62/246 (25%)
Query: 376 HRLKEYEQGVYAYKPHIEELEKIHQAVQEGMIFENRYTQYTMETLRVGWEQLL------T 429
L + Q + + E E + +++ L+ +++
Sbjct: 511 QELDDQIQANLPDEKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLR 570
Query: 430 SINRNINEVENQILTRDSKGITQEQLNEFRA----------SFNHFDKNRTGRLAPEEFK 479
+ ++ + + D G + L EF F FD +++G ++ E +
Sbjct: 571 TNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMR 630
Query: 480 SCLVSLGYSIGK-----------DRQGEIDFQR-ILAVV------------DPNSTGYVH 515
+ + G+ + D + IDF + +V DP +TG +
Sbjct: 631 MAIEAAGFKLPCQLHQVIVARFADDELIIDFDNFVRCLVRLEILFKIFKQLDPENTGTIQ 690
Query: 516 FD----------------------AFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPD 553
D + + E+ +++ Q F LAGD +
Sbjct: 691 LDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDMEVSAT 750
Query: 554 ELRREL 559
EL L
Sbjct: 751 ELMNIL 756
Score = 40.1 bits (93), Expect = 0.002
Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 48/164 (29%)
Query: 408 FENRYTQYTMETLRVGWEQLLTSINR-------------NINEVENQILTRDSKGITQEQ 454
F + Q + + V +L+ +N+ I+ + + DS +
Sbjct: 733 FRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLG 792
Query: 455 LNEFRA----------SFNHFDKNRTGRLAPEEFKSCLVSLGYSIGK-----------DR 493
EF+ + F+ +R+G + E + G+ + + D
Sbjct: 793 FEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYSDE 852
Query: 494 QGEIDFQR-ILAVV------------DPNSTGYVHFDAFLDFMT 524
G +DF I +V D N TG + + +++
Sbjct: 853 TGNMDFDNFISCLVRLDAMFRAFRSLDKNGTGQIQVN-IQEWLQ 895
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 449 GITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
G+T + ++ + +F D++++G + +E K L E L D
Sbjct: 35 GLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETK--AFLKAGDS 92
Query: 509 NSTGYVHFDAFLDFMT 524
+ G + D + +
Sbjct: 93 DGDGAIGVDEWAALVK 108
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 24/113 (21%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
IT+EQ + F + + ++ K+ S + I + D +
Sbjct: 16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS-------IPELSYIWELSDAD 68
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK-PYILPDELRRELPP 561
G + F +I G P LP L P
Sbjct: 69 CDGALTLPEFCAAF-----------HLIV--ARKNGYPLPEGLPPTL---QPE 105
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 21/107 (19%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
IT EQ + F + G + K ++ I + D +
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP-------ILELSHIWELSDFD 55
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK-PYILPDEL 555
G + D F ++ G P LP+ L
Sbjct: 56 KDGALTLDEFCAAF-----------HLVV--ARKNGYDLPEKLPESL 89
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 38.3 bits (89), Expect = 0.003
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
+S T+ ++ E+ F +G L+ EEFK + + E +
Sbjct: 17 LESTDFTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAE----HVFR 70
Query: 505 VVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
D N G + F F+ ++ S +++ +F + D YI E+
Sbjct: 71 TFDANGDGTIDFREFIIALSVTSRGKLE-QKLKWAFSMYDLDGNGYISKAEMLE 123
Score = 32.5 bits (74), Expect = 0.24
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ-- 500
L+ S+G +++L + +F+ +D + G ++ E + ++ + + D
Sbjct: 89 LSVTSRGKLEQKL---KWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTP 145
Query: 501 -----RILAVVDPNSTGYVHFDAFLDFMTR 525
+I +D N G + + F+
Sbjct: 146 EKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.0 bits (91), Expect = 0.005
Identities = 44/336 (13%), Positives = 111/336 (33%), Gaps = 54/336 (16%)
Query: 16 VQKKLEEYRT---YRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIA 72
+Q+KL+ + + +K +LE + ++ ++ +
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE----------------EEE 940
Query: 73 NAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQC 132
+ L+ +K ++ +L +LE E QK + + + + E+ + + +
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 133 KLN-ELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWD 191
KL E K L+++ ++LA +++ + + + + ++
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM-------------------- 1040
Query: 192 HLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDM--FIVHTME 249
+ E E L+K + E K E + ++ I
Sbjct: 1041 ------------ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 250 EIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQYQIPGGLENPYTALTANDLTK 309
++ + A L + + N+ + +RE+ES + Q E
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 310 KWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAEK 345
++ L + + TL +Q+ + + +K
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 37.4 bits (87), Expect = 0.005
Identities = 20/129 (15%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEID--FQ 500
L+ KG ++L R F +D + G + E + + ++ + +
Sbjct: 78 LSLVLKGKVDQKL---RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTN 134
Query: 501 RILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKPYILPDELRRELP 560
+ +D N G + + F++ + ++ D + +D I ++ ++ +
Sbjct: 135 MVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHI-----VKLIQNDGKNPHA 189
Query: 561 PDQAEYCIQ 569
P++AE Q
Sbjct: 190 PEEAEEAAQ 198
Score = 37.1 bits (86), Expect = 0.007
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
+ + +++ F + +G+L EFK S ++ +++ D N
Sbjct: 12 SATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANK----YVEQMFETFDFNK 65
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
GY+ F ++ ++ +++ F++ D I EL +
Sbjct: 66 DGYIDFMEYVAALSLVLKGKVD-QKLRWYFKLYDVDGNGCIDRGELLNII 114
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 37.7 bits (87), Expect = 0.006
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ------ 500
+G E+L + +FN +D N+ G + EE + + S+ +G+ +
Sbjct: 159 LRGTVHEKL---KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHV 215
Query: 501 -RILAVVDPNSTGYVHFDAFLDFMTR 525
R +D N G V D FL+ +
Sbjct: 216 ERFFQKMDRNQDGVVTIDEFLETCQK 241
Score = 32.3 bits (73), Expect = 0.32
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 8/114 (7%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
+ T+++L F + G + + FK +
Sbjct: 83 QAQTKFTKKELQSLYRGFKNECPT--GLVDEDTFKLIYSQ----FFPQGDATTYAHFLFN 136
Query: 505 VVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
D + G +HF+ F+ ++ T E++ +F + +K I +E+
Sbjct: 137 AFDADGNGAIHFEDFVVGLSILLRGTVH-EKLKWAFNLYDINKDGCITKEEMLA 189
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 37.5 bits (87), Expect = 0.007
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 451 TQEQLNEFRASFNHFDKNRT--GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDP 508
+ ++ F G + EEF+ L R+ + D
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFAD------RVFDLFDT 96
Query: 509 NSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRREL 559
G + F+ F ++ + +++ SF++ + +I E+++ +
Sbjct: 97 KHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMV 148
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 37.1 bits (86), Expect = 0.007
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF---------- 499
+++E L E++ K F L S+ + ++ F
Sbjct: 31 LSKELLAEYQDL-TFLTKQEILLAH-RRFCELLPQEQRSVESSLRAQVPFEQILSLPELK 88
Query: 500 -----QRILAVVDPN-STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILP 552
+RI V + + + F+ FLD ++ S + +FRI D +
Sbjct: 89 ANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNR 148
Query: 553 DELRR 557
++L R
Sbjct: 149 EDLSR 153
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 36.5 bits (84), Expect = 0.011
Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
++E+L + SF TGR+ ++F+S + + D N
Sbjct: 31 SEEELCSWYQSF--LKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQ----HVFRSFDSNL 84
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G + F ++ + + +++ +F + D I +E+
Sbjct: 85 DGTLDFKEYVIALHMTTAGKTN-QKLEWAFSLYDVDGNGTISKNEVLE 131
Score = 31.9 bits (72), Expect = 0.36
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ-- 500
L + G T ++L F+ +D + G ++ E ++++ I + +
Sbjct: 97 LHMTTAGKTNQKLEWA---FSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDEN 153
Query: 501 -------RILAVVDPNSTGYVHFDAFLDFMTR 525
+I N + F++
Sbjct: 154 TPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 36.4 bits (84), Expect = 0.017
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ------ 500
+G QE+L +FN +D N+ G + EE + ++ +GK +
Sbjct: 132 LRGTVQEKL---NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHV 188
Query: 501 -RILAVVDPNSTGYVHFDAFLDFMTR 525
+D N G V D F++ +
Sbjct: 189 ETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 33.7 bits (77), Expect = 0.12
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
T+++L F + + G + E FK + D +
Sbjct: 62 TKKELQILYRGFKNECPS--GVVNEETFKEIYSQFFPQGDSTTYAH----FLFNAFDTDH 115
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G V F+ F+ ++ T E++ +F + +K YI +E+
Sbjct: 116 NGAVSFEDFIKGLSILLRGT-VQEKLNWAFNLYDINKDGYITKEEMLD 162
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 36.1 bits (83), Expect = 0.019
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ------ 500
+G E+L R +FN +D N+ G + EE + ++ +GK +
Sbjct: 119 LRGTVHEKL---RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHV 175
Query: 501 -RILAVVDPNSTGYVHFDAFLDFMTR 525
+D N G V D FL+
Sbjct: 176 DVFFQKMDKNKDGIVTLDEFLESCQE 201
Score = 28.0 bits (62), Expect = 7.4
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 462 FNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLD 521
FN FD +TG + E+F + L L ++ F D N GY++ + +D
Sbjct: 95 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWT-FNLY----DINKDGYINKEEMMD 149
Query: 522 FM----------TRESTDTDTAEQVID 538
+ T DT Q +D
Sbjct: 150 IVKAIYDMMGKYTYPVLKEDTPRQHVD 176
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 34.4 bits (79), Expect = 0.030
Identities = 11/104 (10%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 438 VEN-QILTRD-SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQG 495
EN + T + ++ ++++ F + FD + T + + +L + +
Sbjct: 23 SENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPN 82
Query: 496 EIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDS 539
++ + + +H L T+ +
Sbjct: 83 KVQLIAMDLPMVSG--DRIHCLDILFAFTKRVLGESGEMDALRI 124
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 36.3 bits (83), Expect = 0.031
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 434 NINEVENQILTRDSKGITQEQLNEFR----------ASFNHFDKNRTGRLAPEEFKSCLV 483
+I + + D G + L EF + D +R+G + E + L
Sbjct: 573 SIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALE 632
Query: 484 SLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDT 532
G+ + +++ + + FD F+ + R
Sbjct: 633 EAGFKLPC------QLHQVIVARFADDELIIDFDNFVRCLVRLEILFKI 675
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 35.2 bits (81), Expect = 0.033
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ------ 500
+G E+L R +FN +D N+ G + EE + ++ +GK +
Sbjct: 86 LRGTVHEKL---RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHV 142
Query: 501 -RILAVVDPNSTGYVHFDAFLDFMTRE 526
+D N G V D FL+ +
Sbjct: 143 DVFFQKMDKNKDGIVTLDEFLESXQED 169
Score = 29.0 bits (65), Expect = 3.5
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 15/87 (17%)
Query: 462 FNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLD 521
FN FD +TG + E+F + L L ++ F D N GY++ + +D
Sbjct: 62 FNAFDTTQTGSVKFEDFVTALSILLRGTVHEKL-RWTFNLY----DINKDGYINKEEMMD 116
Query: 522 F----------MTRESTDTDTAEQVID 538
T DT Q +D
Sbjct: 117 IVKAIYDMMGKYTYPVLKEDTPRQHVD 143
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 34.2 bits (78), Expect = 0.055
Identities = 16/137 (11%), Positives = 40/137 (29%), Gaps = 8/137 (5%)
Query: 440 NQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF 499
+ ++ ++++ + F + FD T + +L + + +I
Sbjct: 4 SVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISL 63
Query: 500 QRILAVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDS---FRILAGDKPYILPDELR 556
+ + +H L T+ + + +A + I + +
Sbjct: 64 INMDLPMVSG--DRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPIT 121
Query: 557 RELPPDQAEYC---IQR 570
L E IQR
Sbjct: 122 TTLRRKHEEVSAMVIQR 138
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 33.9 bits (77), Expect = 0.083
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 446 DSKGITQEQLNEF-------------RASFNHFDKNRTGRLAPEEFK----SCLVSLGYS 488
+ +T+++L +F R F+ DKN GRL EE K + S
Sbjct: 75 VKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLS 134
Query: 489 IGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTRESTDTDT 532
K+R E I+ +DP + GY+ + + + ++
Sbjct: 135 KIKERADEYT-ALIMEELDPTNLGYIEMEDLEALLLQSPSEAAA 177
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 33.7 bits (77), Expect = 0.084
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ-- 500
L+ S+G E+L R +F +D + G + E + ++ +G + +
Sbjct: 89 LSVTSRGTLDEKL---RWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTP 145
Query: 501 -----RILAVVDPNSTGYVHFDAFLDFMTR 525
RI A++D N+ G + F +
Sbjct: 146 EKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
Score = 32.9 bits (75), Expect = 0.16
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNS 510
T++++ ++ F + G+L F+ + V D N
Sbjct: 23 TEKEVQQWYKGFIKDCPS--GQLDAAGFQKIYKQ----FFPFGDPTKFATFVFNVFDENK 76
Query: 511 TGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
G + F F+ ++ S T E++ +F++ D YI +E+
Sbjct: 77 DGRIEFSEFIQALSVTSRGTLD-EKLRWAFKLYDLDNDGYITRNEMLD 123
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 34.3 bits (79), Expect = 0.12
Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 30/179 (16%)
Query: 36 EQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIANAWKGLETSEKSFEEWLLSEMMR 95
+ LE LQ K+ + K + LE + + E L S++ R
Sbjct: 921 KLHIGLENKIMQLQRKID---------EQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 96 LERLEHLAQKFKHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQ 155
L E A+ ++ + EE+ + E K +++ + ++ +
Sbjct: 972 LRMSEEEAKNATNRVLSLQ------EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 156 DRVE-QIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALDEAEKILEK 213
++ Q + E L +RI DQ +T+ L E K LE
Sbjct: 1026 SELKEQNTLLKTEKEELN-----------RRIHDQ---AKEITETMEKKLVEETKQLEL 1070
Score = 33.2 bits (76), Expect = 0.32
Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 41/317 (12%)
Query: 28 RKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIANAWKGLETSEKSFEE 87
R H+ + +Q R M K + +A L+ + +
Sbjct: 802 RGHQARCYATFLRRTRAAIIIQKFQR-------MYVVRKRYQCMRDATIALQALLRGYLV 854
Query: 88 WLLSEMMRLERLEHLAQKF--KHKADIHEDWTRGKEEMLQSSDFRQCKLNELKALKKKHE 145
+MM E + QK A +H T LQ R ELK LK +
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914
Query: 146 AFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQWDHLGALTQQRRHALD 205
+ E H +I + ++++ + + ++ ++L L
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQN--------KEYKSLLEKMNNLEITYSTETEKLR 966
Query: 206 EAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTMEEIQGLIDAHSQFKATL 265
+ L + R + R++L T E + + + ++K
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ-----TQTEKKTIEEWADKYKHET 1021
Query: 266 GEADKEYNSIVNLVR-EVESTVQQYQIPGGLENPYTALTANDLTKKWTDVRKLVPQRDTT 324
+ E L++ E E ++ D K+ T+ + ++
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIH---------------DQAKEITETME---KKLVE 1063
Query: 325 LQAELRKQQNNETLRRQ 341
+L N+E LR Q
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 33.3 bits (76), Expect = 0.12
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ------ 500
S+G ++L F +D + G ++ +E + ++ +G + D
Sbjct: 93 SRGELNDKLIWA---FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRV 149
Query: 501 -RILAVVDPNSTGYVHFDAFLDFMTR 525
+I ++D N G + + F + R
Sbjct: 150 NKIFNMMDKNKDGQLTLEEFCEGSKR 175
Score = 32.9 bits (75), Expect = 0.16
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 445 RDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILA 504
S +++L ++ F + G L EF+ + +
Sbjct: 17 VRSTRFDKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPFGDPS----AFAEYVFN 70
Query: 505 VVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDKP-YILPDELRR 557
V D + GY+ F F+ ++ S + +++I +F++ D I DE+ R
Sbjct: 71 VFDADKNGYIDFKEFICALSVTSR-GELNDKLIWAFQLYDLDNNGLISYDEMLR 123
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 32.9 bits (75), Expect = 0.15
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 443 LTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQ-- 500
L+ S+G +E+L +F +D N G + +E + + S+ +G D
Sbjct: 89 LSTTSRGTLEEKL---SWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATP 145
Query: 501 -----RILAVVDPNSTGYVHFDAFLDFMTR 525
+I ++D N GY+ D F +
Sbjct: 146 EMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 32.4 bits (74), Expect = 0.22
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 21/125 (16%)
Query: 451 TQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDF----------- 499
++E L E++ K F L S+ + ++ F
Sbjct: 1 SKELLAEYQDL-TFLTKQEILLAH-RRFCELLPQEQRSVESSLRAQVPFEQILSLPELKA 58
Query: 500 ----QRILAVVDPN-STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRI--LAGDKPYILP 552
+RI V + + + F+ FLD ++ S + +FRI D +
Sbjct: 59 NPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDG-TLNR 117
Query: 553 DELRR 557
++L R
Sbjct: 118 EDLSR 122
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 30.9 bits (70), Expect = 0.23
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 462 FNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLD 521
F+ F ++ G L E+ + + ++++ + +I+ +D G V F +F
Sbjct: 15 FHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFS 73
Query: 522 FMTR 525
+
Sbjct: 74 LIAG 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.30
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 271 EYNSIVNLVREVESTVQQYQIPGGLENPYTALTAN 305
E ++ ++++++++ Y P A+ A
Sbjct: 18 EKQAL----KKLQASLKLYA-DD--SAPALAIKAT 45
Score = 27.6 bits (60), Expect = 7.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 135 NELKALKKKHEAFESDLAAHQDRVEQIAAIAQELN-TLE 172
LK L ++ L + D + A+A + T+E
Sbjct: 20 QALKKL-------QASLKLYAD--DSAPALA--IKATME 47
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 31.5 bits (72), Expect = 0.82
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 279 VREVESTVQQYQIPGG-LENPYTALTANDLTKKWTDVRKLVPQ 320
++ S V + +IPGG N + + L K+ +V+K +
Sbjct: 394 MKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVE 436
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 31.0 bits (71), Expect = 1.3
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 270 KEYNSIVNLVREVESTVQQYQIPGG-LENPYTALTANDLTKKWTDVRKLVPQ 320
K+Y++ +++ ++ + Q+PGG L N + L + K V + +P+
Sbjct: 279 KKYHAFEGMMKGSDARILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPR 330
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.5
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 71 IANAWKGLETSEKSFEEWLLSEMMRLERLEHLAQKFKH----KADIH-EDWTRGKEEMLQ 125
IA A + + E S +W + RL+ L+ ++ + KA E+W + + E ++
Sbjct: 74 IAQADRLTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 126 SSDFRQCKLNELKALKKKHEA 146
+ ++ + KA ++ +A
Sbjct: 133 KNKINN-RIAD-KAFYQQPDA 151
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.8 bits (64), Expect = 1.8
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 459 RASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEID-----------FQRILAVVD 507
+ F D N G L +E ++ + + E D + ++ VD
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 508 PNSTGYVHFDAFLDFMTRES 527
N V + FL R+
Sbjct: 83 TNQDRLVTLEEFLASTQRKE 102
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 282 VESTVQQYQIPGG-LENPYTALTANDLTKKWTDVRKLVPQ 320
V++++ + QIPGG L N + L A K +V VP+
Sbjct: 309 VDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPR 348
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein
structure initiative, MCSG, PSI; HET: P33; 1.75A
{Geobacillus stearothermophilus} SCOP: d.58.4.10
Length = 248
Score = 29.9 bits (67), Expect = 1.9
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 190 WDHLGALTQQ-RRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTM 248
W L + R A+ E ++++ + E A + + G + D++ M + T+
Sbjct: 22 WSAWKTLPNEEREAAISEFLALVDQWETTESEKQGSHAVY--TIVGQKADILFMILRPTL 79
Query: 249 EEIQGLIDAHSQFKAT-LGEADKEYNSIVNLVREVE 283
+E+ + + T L + S V++V
Sbjct: 80 DELH---EIETALNKTKLADYLLPAYSYVSVVELSN 112
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 28.2 bits (63), Expect = 2.4
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 466 DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
K L+ E K L + K+ + + I +D N V F F+ +
Sbjct: 24 RKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 29.7 bits (66), Expect = 2.4
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 425 EQLLTSINRNIN-EVENQILTRDSKGITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLV 483
LT+I + E N + + L N +D RTGR+ FK+ ++
Sbjct: 106 INCLTTIYDRLEQEHNNLVNVPLCVDMCLNWL------LNVYDTGRTGRIRVLSFKTGII 159
Query: 484 SL 485
SL
Sbjct: 160 SL 161
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.9 bits (62), Expect = 2.9
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L E K L + E D+ + ++V+D N V F ++ +
Sbjct: 27 YKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLAC 81
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 28.2 bits (63), Expect = 3.0
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 25/113 (22%)
Query: 450 ITQEQLNEFRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPN 509
+ E ++ A F+ G L+ ++ K L++ + R+ + D +
Sbjct: 9 VKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVD-------ILGRVWELSDID 60
Query: 510 STGYVHFDAFLDFMTRESTDTDTAEQVIDSFRILAGDK-PYILPDELRRELPP 561
G + D F M + L + P LP L +PP
Sbjct: 61 HDGMLDRDEFAVAMFL-------------VYCALEKEPVPMSLPPAL---VPP 97
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 28.0 bits (62), Expect = 3.2
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 466 DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+ +L E K L S R E FQ++++ +D N V F + F++
Sbjct: 34 KEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.9 bits (62), Expect = 3.3
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 466 DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+ +L E K L S R E FQ++++ +D N V F + F++
Sbjct: 25 KEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSS 84
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 29.7 bits (66), Expect = 3.4
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLA 474
S I ++N + F ++
Sbjct: 6 SSSIDISKINSWNKEFQSDLTHQLATTV 33
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease,
hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Length = 290
Score = 29.3 bits (65), Expect = 3.7
Identities = 24/184 (13%), Positives = 62/184 (33%), Gaps = 22/184 (11%)
Query: 118 RGKEEMLQSSDFRQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSV 177
R + + +N + ++F+ +L A D+ E++ +++++ S
Sbjct: 13 RKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVE----SK 68
Query: 178 SVNARCQRICDQWDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFN------NW 231
RI L E+E L+ + + A+ + +
Sbjct: 69 RTIFLLHRITSA--------PDMEDILTESEIKLDGVRQKIFQVAQELSGEDMHQFHRAI 120
Query: 232 LDGTREDLVDMFIVHTMEEIQGLI---DAHSQFKATLGEADKEYNSIVNLVREVESTVQQ 288
G +E V+ + + LI + + Q T + KE + + ++ + +
Sbjct: 121 TTGLQE-YVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWR 179
Query: 289 YQIP 292
++
Sbjct: 180 LRVT 183
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.5 bits (61), Expect = 3.8
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L E K L S R E FQ++++ +D N V F + F++
Sbjct: 27 FKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSC 81
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 27.4 bits (61), Expect = 4.1
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L+ +E K L + S ++ +I+ +D N G V F F+ +
Sbjct: 26 YKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 29.3 bits (65), Expect = 4.4
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 447 SKGITQEQLNEFRASFNHFDKNRTGRLA 474
S G+ E++ N + +
Sbjct: 2 SSGLNSEKVAALIQKLNSDPQFVLAQNV 29
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.5 bits (61), Expect = 4.4
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L E K + + ++ + + +++ +D N G F F+ F+
Sbjct: 26 HKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
>3pdm_P Coat protein; helical virus, virus-RNA complex; 3.50A {Hibiscus
latent singapore virus}
Length = 162
Score = 28.6 bits (63), Expect = 4.5
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 298 PYTALTANDL---TKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAE 344
PY LT +L + + + + + Q +TLR Q
Sbjct: 1 PYLNLTPLNLIYTSGTFAPYDVFLEILVKSRSNSFQTQAGRDTLREQLIN 50
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 27.5 bits (61), Expect = 4.5
Identities = 8/60 (13%), Positives = 20/60 (33%)
Query: 466 DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+++ F+ L + D +++ +D N G + FD + +
Sbjct: 24 YSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
>3kml_A Coat protein; permutant, TMV, TMVP, CPTMVP, acetylation, capsid
protein, virion, viral protein; 3.01A {Tobacco mosaic
virus}
Length = 161
Score = 28.5 bits (63), Expect = 4.6
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 292 PGGLENPYTALTANDL---TKKWTDVRKLVPQRDTTLQAELRKQQNNETLRRQFAE 344
E Y+ T + + W D +L+ L + + QQ ++RQF+E
Sbjct: 57 GPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSE 112
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 27.5 bits (61), Expect = 4.6
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 458 FRASFNHFDKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFD 517
+ + + TGR+ + + L G +I + D + G +
Sbjct: 13 YEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDL-------ILGKIWDLADTDGKGVLSKQ 65
Query: 518 AFLDFM 523
F +
Sbjct: 66 EFFVAL 71
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L+ E K L + ++ + ++I+ +D N V F+ F+ +
Sbjct: 27 YKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 27.1 bits (60), Expect = 5.6
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 471 GRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAFLDFMTR 525
+L+ E K L S ++ E ++++ +D NS V F + F+
Sbjct: 28 FKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFLAL 82
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium
meliloti} PDB: 3ju2_A
Length = 275
Score = 28.6 bits (64), Expect = 6.1
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 494 QGEIDFQRIL-AVVDPNSTGYVHFDAFLDFMTRESTDTDTAEQVIDSFR 541
G ID + I + G + F + + ++ +R
Sbjct: 224 DGVIDLKGIRRRIEAAGFHGAQEVEIFSADNWWKRPADEVIATCVERYR 272
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.8 bits (63), Expect = 6.3
Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 31/160 (19%)
Query: 130 RQCKLNELKALKKKHEAFESDLAAHQDRVEQIAAIAQELNTLEYHDSVSVNARCQRICDQ 189
R+ N+LK++ + A + + A EL+
Sbjct: 572 REGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELD-------------------- 611
Query: 190 WDHLGALTQQRRHALDEAEKILEKIDILHLEFAKRAAPFNNWLDGTREDLVDMFIVHTME 249
G LT + + +L + E +L+ I + H EF+K + + ++
Sbjct: 612 -RVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM----------KQSNNEANLREEVLK 660
Query: 250 EIQGLIDAHSQFKATLGEADKEYNSIVNLVREVESTVQQY 289
+ D + A L E K YN + ++ ++
Sbjct: 661 NLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI 700
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 27.1 bits (60), Expect = 6.7
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 462 FNHF--DKNRTGRLAPEEFKSCLVSLGYSIGKDRQGEIDFQRILAVVDPNSTGYVHFDAF 519
F +++ EF + + + ++++ R++ +D +S G + F F
Sbjct: 19 FQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEF 78
Query: 520 LDFMTR 525
L+ +
Sbjct: 79 LNLIGG 84
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 28.3 bits (64), Expect = 7.7
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 158 VEQIAAIAQELNTLEYHDSVSVNARC-----QRICDQWDHLGALTQQRRHAL 204
+ ++ + QE L+ C +I + D +G + + R L
Sbjct: 1 MSELDQLRQEAEQLKNQ-IRDARKACADATLSQITNNIDPVGRIQMRTRRTL 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 28.7 bits (63), Expect = 7.7
Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 6/91 (6%)
Query: 114 EDWTRGKEEMLQSSDFRQ--CKLNELKALKKKHEAFES-DLAAHQDRVEQIAAIAQELNT 170
+ Q Q ++ K ++ + +L+ H + I +++
Sbjct: 727 KTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEE 786
Query: 171 LEY---HDSVSVNARCQRICDQWDHLGALTQ 198
L + ++S+ ++ + Q
Sbjct: 787 LYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQ 817
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,158,153
Number of extensions: 555324
Number of successful extensions: 2130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1822
Number of HSP's successfully gapped: 351
Length of query: 599
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 500
Effective length of database: 3,937,614
Effective search space: 1968807000
Effective search space used: 1968807000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)