BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12564
(1033 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 229 bits (584), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 175/310 (56%), Gaps = 55/310 (17%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
D+ PWN K+ SWNVNG+RAW K+G ++++ ++F IQE +C K
Sbjct: 91 DKKPWNLKLCSWNVNGVRAW------------LGKEGLEYLKKEQPDIFAIQETKCSDSK 138
Query: 789 LP---ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
LP + EGYH+++ G ++GY+GVA+L+K KP+ V +G M+
Sbjct: 139 LPPEMKSVEGYHSYFLAGDQEGYSGVALLAKIKPLDVKYGIGME---------------- 182
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL 905
H + +GRV+T E+++FYLV VY P A + L L ++
Sbjct: 183 ---------KHDK-------------EGRVITAEFDKFYLVAVYVPNAGKKLVRLDYRME 220
Query: 906 WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
W+ R +LK L K VVL GD+NVAH ID+A P TN +GFT +ER+ F+ L+ G
Sbjct: 221 WDKDFRAYLKELEAKKHVVLCGDMNVAHQEIDLANPKTNKKNAGFTQEERDGFTALLESG 280
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
F+D RHLYP+ + YT+W Y + +K GWRLDYF++SK L S++SD IH V GSD
Sbjct: 281 FVDSFRHLYPDKKGAYTFWTYMMNARAKNVGWRLDYFILSKALASNISDSLIHSQVMGSD 340
Query: 1024 HAPQILYLNL 1033
H P IL LN+
Sbjct: 341 HCPVILLLNI 350
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 168/326 (51%), Gaps = 62/326 (19%)
Query: 713 IDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH 772
IDF++ + + K WNFKI +WNV+GIRAW K G +++
Sbjct: 354 IDFSNKSQTSQGKE------WNFKIANWNVDGIRAW------------MGKGGLDYLKYE 395
Query: 773 DLNVFCIQEIRCPLEKLP----ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSM 828
++ C+QE +C L+KLP P GYHA+W + GYAGV + + + V +G
Sbjct: 396 KPDILCLQETKCALDKLPYEVKNIP-GYHAYWLSSDKDGYAGVGIYTTKLAMNVQYGLQ- 453
Query: 829 KVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNV 888
+ EL + +GR++T EYEQFYL+
Sbjct: 454 ---------------------------NEELDS----------EGRIITAEYEQFYLICT 476
Query: 889 YAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS 948
Y P A L L +L WN R H+K+L+E KPV++ GD+NVAHN ID+ P TN +
Sbjct: 477 YVPNAGRKLVSLPKRLKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNPKTNKKNA 536
Query: 949 GFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLK 1007
GFT +ER + L GF+D RH +P YT+W Y + +K GWRLDYF++S++L
Sbjct: 537 GFTEEERAGMTELLGDGFVDTFRHFHPEKVAYTFWSYMANSRAKNVGWRLDYFIVSERLL 596
Query: 1008 SHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ D I G+V GSDH P LYL+L
Sbjct: 597 PSICDSSIRGEVYGSDHCPIALYLHL 622
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 163/306 (53%), Gaps = 57/306 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
NF I +WNV+G+R+W +K ++ ++ CIQE +C + KLPE
Sbjct: 992 NFHITTWNVDGLRSW------------LKKGCLDILKYDKPDILCIQETKCAVYKLPEEV 1039
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EGY W + GYAGV ++ K KP+ V +G S EH ++
Sbjct: 1040 KTIEGYETLWCCSDKDGYAGVGIMVKDKPLNVIYGID---------------SKEHDTE- 1083
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GR +TVEYE F++VNVY P A +L L +L WN
Sbjct: 1084 ----------------------GRCITVEYETFFVVNVYVPHAGRNLVTLPKRLDWNEQF 1121
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+K+L+ KPV++ GD+NVAH ID+A P TN +GF+++ER+ + FL G++D++
Sbjct: 1122 EKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIY 1181
Query: 971 RHLYP-NHRIYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
RHLYP + YT+W Y RP+ + GWRLDYFL+S++ ++ D IH DV GSDH P
Sbjct: 1182 RHLYPEKEKAYTFWIYMRNARPNNV-GWRLDYFLVSQRFVDNVCDNIIHSDVMGSDHCPL 1240
Query: 1028 ILYLNL 1033
L++ +
Sbjct: 1241 SLHIQI 1246
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 172/331 (51%), Gaps = 58/331 (17%)
Query: 708 EEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS 767
E +P + ND +D WN K SWNVNGIRAW + K+G S
Sbjct: 30 ESIPDVSGND---YSSEAATKDGKKWNLKFSSWNVNGIRAWVE------------KNGHS 74
Query: 768 FMRQHDLNVFCIQEIRCPLEKLPECP--EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHG 825
++ D ++FC+QE +C + +P+ EGYHA+W G + GY+G + SK +P+ VT+G
Sbjct: 75 YVTAEDPDIFCVQETKCAKDLIPDDANIEGYHAYWLSGDKDGYSGTGLYSKQEPLSVTYG 134
Query: 826 FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYL 885
+ EH D E GRV+T E+++FY
Sbjct: 135 IDKE---------------EH--DKE---------------------GRVITAEFDKFYF 156
Query: 886 VNVYAPAAKEDLSMLSVKL-LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN 944
V Y P A L LS + W+ R +LK+L+ KPVV+ GDLNVAH ID+A P +N
Sbjct: 157 VTAYVPNAGRGLPRLSYRSEKWDPDFREYLKNLDAKKPVVMCGDLNVAHKEIDIANPKSN 216
Query: 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWPYYDRP-SKMKGWRLDYFLI 1002
+GFT QER FS L+ GF+D R LYP + Y+YW Y K GWRLDYF++
Sbjct: 217 KKSAGFTPQERQGFSELLEAGFVDAFRELYPEETKKYSYWTYMGNARGKNVGWRLDYFVV 276
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
S+++K + D I +V GSDH P +L +N+
Sbjct: 277 SEKIKDGICDSLIRSEVMGSDHCPVVLLMNI 307
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 169/305 (55%), Gaps = 54/305 (17%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
+N KI SWNV+GIRA + +K+G +M + D ++ +QE +C KLPE
Sbjct: 103 YNLKISSWNVSGIRA------------VIKKNGMEYMLKEDADIIALQETKCDKNKLPEE 150
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GYH ++ + GY GVA+ +K KP+ + +G
Sbjct: 151 VKLNGYHYYFLESKKPGYCGVALYTKEKPIDIKYG------------------------- 185
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
L +++ +GR++T EY FYL+NVY P A + L L +L WN
Sbjct: 186 --------LDNVEFDS-----EGRLITAEYSNFYLINVYVPNAGQKLITLPKRLKWNEAF 232
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ ++K+L+E KPV++ GD+NVAH ID+ P TN +GFT +ER+ ++FLD GF+D
Sbjct: 233 KAYVKNLDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTF 292
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYPN YT+W Y+ + SK GWRLDYFL+S+Q+K ++ D I V GSDH P +
Sbjct: 293 RALYPNKEGAYTFWSYFANARSKNIGWRLDYFLVSEQIKDNVCDNVIRDKVYGSDHCPIV 352
Query: 1029 LYLNL 1033
LY+N+
Sbjct: 353 LYINI 357
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 170/305 (55%), Gaps = 54/305 (17%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
+N KI SWNV+GIRA + +K+G +M + D ++ +QE +C KLPE
Sbjct: 80 YNLKISSWNVSGIRA------------VIKKNGMEYMLKEDADIIALQETKCDKNKLPEE 127
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GYH ++ + GY GVA+ +K KP+ + +G
Sbjct: 128 VKLNGYHYYFLESKKPGYCGVALYTKEKPIDIKYG------------------------- 162
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
L +++ +GR++T EY FYLVNVY P A + L L +L WN
Sbjct: 163 --------LDNVEFDS-----EGRLITAEYSNFYLVNVYVPNAGQKLITLPKRLKWNEAF 209
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ ++K+L+E KPV++ GD+NVAH ID+ P TN +GFT +ER+ ++FLD GF+D
Sbjct: 210 KAYVKNLDEKKPVIICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTF 269
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYP+ YT+W Y+ + SK GWRLDYFL+S+Q+K ++ D I +V GSDH P +
Sbjct: 270 RALYPDKEGAYTFWSYFANARSKNIGWRLDYFLVSEQIKDNVCDNVIRDEVYGSDHCPIV 329
Query: 1029 LYLNL 1033
LY+N+
Sbjct: 330 LYINI 334
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 54/313 (17%)
Query: 725 KRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC 784
K Q+ N KI +WNV+GIRA + +K G ++ + D ++ +QE +C
Sbjct: 94 KSNQEGKKHNLKICTWNVSGIRA------------VIKKHGLDYITKEDADIIALQETKC 141
Query: 785 PLEKLPECPE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRG 842
K+P+ + GYH ++ + GY GVA+ SK KP+ V +G +
Sbjct: 142 DKGKMPDEVKLPGYHHYFLDSKKPGYCGVALFSKEKPISVKYGLN--------------- 186
Query: 843 SNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSV 902
D++ +GR++TVE+ +F+++NVY P A + L L
Sbjct: 187 -----------------------DSTFDTEGRIITVEFPEFFVINVYVPNAGQKLVTLPK 223
Query: 903 KLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962
+L WN + H++ L++ KPV++ GD+NVAH ID+ P TN +GFT +ERN ++FL
Sbjct: 224 RLEWNKLFKKHIEELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFL 283
Query: 963 DLGFLDVHRHLYPN-HRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVE 1020
GF+D R LYP YT+W Y+ + SK GWRLDYFLIS+++K+ + D I DV
Sbjct: 284 AAGFIDTFRSLYPEIEGAYTFWSYFANARSKNIGWRLDYFLISERIKNKVCDNIIRKDVY 343
Query: 1021 GSDHAPQILYLNL 1033
GSDH P ILY+NL
Sbjct: 344 GSDHCPVILYINL 356
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/352 (35%), Positives = 179/352 (50%), Gaps = 61/352 (17%)
Query: 689 KIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYP---WNFKIGSWNVNGI 745
K+E +ETS E+ P+ + F I++ K ++ WNFKI SWNV +
Sbjct: 33 KVETSGKVKGKSETS----EKKPLNKIDTDFDIIDFKCAKNSSAGNSWNFKISSWNVVSL 88
Query: 746 RAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE--GYHAFWFPG 803
++ + K+G ++R+ +V C QE +C + P + GYH ++ G
Sbjct: 89 KS------------ITNKNGMEYVRRESPDVMCFQETKCSEKNAPSESKLPGYHRYFAAG 136
Query: 804 TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQ 863
++GYAGVA+ SK KP+ V G G EH +
Sbjct: 137 VKEGYAGVALYSKLKPLSVKIGI---------------GHKEHDT--------------- 166
Query: 864 YADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPV 923
+GRV+T EYE FYLV Y P A L L +L W+ +G+LK L+ KPV
Sbjct: 167 --------EGRVITAEYEDFYLVTAYVPNAGRGLVTLPKRLKWDVAFKGYLKKLDSEKPV 218
Query: 924 VLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTY 982
+L GDLNVAHN ID+ P TN +GFT +ER+ F+ L+ GF+D R LYPN YTY
Sbjct: 219 ILCGDLNVAHNEIDLKNPSTNTKTAGFTQEERDGFTKLLNAGFIDTFRKLYPNKEGAYTY 278
Query: 983 WPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
W Y S+ GWRLDYF++S+++ S + D I +V GSDH P L++ L
Sbjct: 279 WNYIGNARSRNAGWRLDYFVVSERIMSTVCDSVIRKEVYGSDHCPITLFVAL 330
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 54/305 (17%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
+N KI SWNV+GIRA + +K+G ++ + D ++ +QE +C KLPE
Sbjct: 92 YNLKISSWNVSGIRA------------VIKKNGIKYIAKEDADIVALQETKCDSNKLPEE 139
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GYH ++ + GY GVA+ +K KP+ V +G + S+
Sbjct: 140 IKLNGYHYYFLESKKSGYCGVALFTKEKPIDVKYGL-------------------NNSEF 180
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
+ ++GR++T EY FYL+NVY P A + L L +L WN
Sbjct: 181 D-------------------NEGRLITAEYLNFYLINVYVPNAGQKLVTLPKRLKWNEIF 221
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ ++++L+E KPV++ GD+NVAH ID+ P TN+ +GFTI+ER+ ++FL GF+D
Sbjct: 222 KTYVRNLDEKKPVIICGDMNVAHKEIDLRNPKTNIKNAGFTIEERDGMTDFLATGFVDTF 281
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYP+ YT+W Y+ + SK GWRLDYFL+S+++K ++ D I V GSDH P +
Sbjct: 282 RALYPDKTDAYTFWSYFANARSKNIGWRLDYFLVSERIKDNVCDNVIRDKVYGSDHCPIV 341
Query: 1029 LYLNL 1033
LY+N+
Sbjct: 342 LYINI 346
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 156/313 (49%), Gaps = 60/313 (19%)
Query: 728 QDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLE 787
++ PWNFKI SWNV G+R+W K G F+ ++ C+QE +C +
Sbjct: 347 EEDKPWNFKISSWNVAGLRSWVG------------KGGLEFIEHEKPDILCVQETKCTED 394
Query: 788 KLPECP---EGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRG 842
++P+ +GYH +W PG G+AGVA+ SK P V +G
Sbjct: 395 QMPDEARHIKGYHPYWLCKPG---GHAGVAIYSKKMPFHVAYGL---------------- 435
Query: 843 SNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSV 902
D DGR++T EYE+FYLV VY P A L L
Sbjct: 436 ----------------------GDEEQDQDGRLLTAEYEKFYLVCVYVPNAGRKLVTLPK 473
Query: 903 KLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962
+L WN +L+ L+ KPV+L GD+NVAH ID+A P TN +GFT +ER + L
Sbjct: 474 RLRWNEKFHQYLRDLDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTELL 533
Query: 963 DLGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVE 1020
GF+D R LYP+ YT+W Y +K GWRLDYF+ S++L ++D I V
Sbjct: 534 SYGFVDTFRKLYPDRTGAYTFWTYMGGARAKNVGWRLDYFITSERLAGKVTDNVIRSQVF 593
Query: 1021 GSDHAPQILYLNL 1033
GSDH P L+LN+
Sbjct: 594 GSDHCPVTLFLNI 606
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 161/309 (52%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+NFKI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 394 FNFKISSWNVAGLRAW------------LKKDGLQSLALEEPDIFCLQETKCSNDQLPEE 441
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 442 LTHVP-GYHPYWLCMPG---GYAGVAIYSKIMPINVEYGIG----------------NEE 481
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 482 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEARMRW 519
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+++ L+ +K VV+ GD+NV+HN ID+ P TN +GFT +ER+ + L LGF
Sbjct: 520 EKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGF 579
Query: 967 LDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YTYW Y ++ GWRLDY ++S++ + D I + GSDH
Sbjct: 580 VDTFRHLYPDKKGAYTYWTYMSNARARNVGWRLDYCIVSERFVPRVVDHVIRKQLLGSDH 639
Query: 1025 APQILYLNL 1033
P ++LN+
Sbjct: 640 CPITVFLNI 648
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Amphimedon
queenslandica]
Length = 372
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/316 (38%), Positives = 168/316 (53%), Gaps = 59/316 (18%)
Query: 726 RRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP 785
+ +D PW K SWNVNG+RAW + + G ++ Q +VFCIQE +C
Sbjct: 108 KNKDGSPWTHKFSSWNVNGVRAWLKAS------------GIEYVNQECPDVFCIQETKCS 155
Query: 786 LEKLP----ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNR 841
+ LP E P GYH++W ++GY+G + SK +P+ VT+G +
Sbjct: 156 EKDLPKSELEVP-GYHSYWNSAEQKGYSGTGLYSKEEPINVTYGIGI------------- 201
Query: 842 GSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLS 901
P H ++GRV+T E+E+FY V Y P A + L LS
Sbjct: 202 ------------PKHD-------------NEGRVITAEFEKFYFVTAYIPNAGDKLKRLS 236
Query: 902 VKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
++ W+ + +LKSL+E KPVVL GDLNVAH ID+A P TN +GFT +ER FS+
Sbjct: 237 YRVGEWDPDFKKYLKSLDENKPVVLCGDLNVAHKEIDIANPKTNQRSAGFTKEERESFSS 296
Query: 961 FL-DLGFLDVHRHLYPNHR-IYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHG 1017
L D +D R LYP+ + Y+YW Y K KGWRLDYFL+S++LK+ + D I
Sbjct: 297 LLEDNKLIDSFRDLYPDKKEAYSYWSYRSNARKNNKGWRLDYFLVSERLKAAVCDSIIRS 356
Query: 1018 DVEGSDHAPQILYLNL 1033
V GSDH P +L + L
Sbjct: 357 QVYGSDHCPIVLLVAL 372
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 161/309 (52%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+NFKI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 421 FNFKISSWNVAGLRAW------------LKKDGLQSLALEEPDIFCLQETKCSNDQLPEE 468
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 469 LTHVP-GYHPYWLCMPG---GYAGVAIYSKIMPINVEYGIG----------------NEE 508
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 509 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEARMRW 546
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+++ L+ +K VV+ GD+NV+HN ID+ P TN +GFT +ER+ + L LGF
Sbjct: 547 EKLFHSYVQKLDALKAVVICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGF 606
Query: 967 LDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YTYW Y ++ GWRLDY ++S++ + D I + GSDH
Sbjct: 607 VDTFRHLYPDKKGAYTYWTYMSNARARNVGWRLDYCIVSERFVPRVVDHVIRKQLLGSDH 666
Query: 1025 APQILYLNL 1033
P ++LN+
Sbjct: 667 CPITVFLNI 675
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 168/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMIWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+LNL
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLNL 251
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 169/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMIWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK+L+ +L D EIH +EGSDH P +L+L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIHTQIEGSDHCPVVLFLDL 251
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 168/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+LNL
Sbjct: 192 NLEQVYSWWSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLNL 251
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 168/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+LNL
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLNL 251
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 167/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+LNL
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLNL 251
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 168/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMIWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLDL 251
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 253
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 168/300 (56%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHSQIEGSDHCPVVLFLDL 251
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon pisum]
Length = 317
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 182/349 (52%), Gaps = 59/349 (16%)
Query: 689 KIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAW 748
++ N G DS ++ S + ++ I+F+ K+ WN KI SWNV G+RAW
Sbjct: 24 RVRNNDGDDSESKKSKSTQVDLNQINFD------CEKKSAKGLTWNLKIISWNVAGLRAW 77
Query: 749 SQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE--GYHAFWFPGTRQ 806
+KD ++++ D ++ C+QEI+C +++P+ + GY + G +
Sbjct: 78 ------------LKKDVVEYLKKEDPDIICLQEIKCTEKQMPDEAKLPGYKIYINSGDKA 125
Query: 807 GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYAD 866
GY+GVA+ SKTKP+ V G +K D++
Sbjct: 126 GYSGVALYSKTKPISVRMGKEIK-------------------DLDD-------------- 152
Query: 867 ASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLA 926
++GRV+ EYEQF+LV+ Y P A L L ++ W+ R +LK L+ KPVVL
Sbjct: 153 ----NEGRVIEAEYEQFFLVSTYIPNAGAGLKTLPKRMKWDEAFRKYLKELDTKKPVVLT 208
Query: 927 GDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY 985
GDLNVAH ID+A P TN +GFT +ER+ S L+ GF+D R L P YT+W Y
Sbjct: 209 GDLNVAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQGFVDTFRTLNPEKTGAYTFWTY 268
Query: 986 Y-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ + +K GWRLDYF+ SK+ ++ D I +V GSDH P + Y+N+
Sbjct: 269 FHNSRAKNVGWRLDYFITSKRFMDNVCDSTIRNEVLGSDHCPIVFYINI 317
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 167/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AVKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L+L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLFLDL 251
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 425 FNLKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEE 472
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 473 VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEE 512
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 513 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRW 550
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+ ++K L+ +KPVV+ GD+NV+H ID+ P N +GFT +ER+ + L LGF
Sbjct: 551 EKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610
Query: 967 LDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YT+W Y + ++ GWRLDY L+S++ + + EI GSDH
Sbjct: 611 VDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH 670
Query: 1025 APQILYLNL 1033
P ++ N+
Sbjct: 671 CPITIFFNI 679
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 425 FNLKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEE 472
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 473 VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEE 512
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 513 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRW 550
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+ ++K L+ +KPVV+ GD+NV+H ID+ P N +GFT +ER+ + L LGF
Sbjct: 551 EKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610
Query: 967 LDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YT+W Y + ++ GWRLDY L+S++ + + EI GSDH
Sbjct: 611 VDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH 670
Query: 1025 APQILYLNL 1033
P ++ N+
Sbjct: 671 CPITIFFNI 679
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 452 FNLKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEE 499
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 500 VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEE 539
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 540 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRW 577
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+ ++K L+ +KPVV+ GD+NV+H ID+ P N +GFT +ER+ + L LGF
Sbjct: 578 EKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 637
Query: 967 LDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YT+W Y + ++ GWRLDY L+S++ + + EI GSDH
Sbjct: 638 VDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH 697
Query: 1025 APQILYLNL 1033
P ++ N+
Sbjct: 698 CPITIFFNI 706
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile rotundata]
Length = 336
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 54/305 (17%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV+GIRA L +K G ++ + D ++ +QE +C KLPE
Sbjct: 82 YNLKISSWNVSGIRA------------LIKKSGMEYIMKEDADIVALQETKCDKNKLPEE 129
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+GYH ++ + GY GVA+ +K KP+ + +G
Sbjct: 130 VKLKGYHHYFLDSKKAGYCGVALYTKQKPIDIQYGLK----------------------- 166
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
++ D+GR++T EY FY +NVY P A + L L +L WN
Sbjct: 167 ---------------NSEFDDEGRLITAEYPNFYFLNVYVPNAGQKLVTLPKRLQWNEAF 211
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ ++K L+E KPV++ GD+NVAH ID+ P TN +GFT +ER ++FL GF+D
Sbjct: 212 KSYVKQLDEKKPVIICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGMTDFLAAGFVDTF 271
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYP+ YT+W Y+ + SK GWRLDYFL+S+++K+ + D I + GSDH P +
Sbjct: 272 RSLYPDKTGAYTFWSYFANARSKNIGWRLDYFLVSEKIKNKVCDNVIRDKIYGSDHCPIV 331
Query: 1029 LYLNL 1033
L++N+
Sbjct: 332 LFVNI 336
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 59/305 (19%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
++KI +WNVNGIR+W + G ++ + D +V+C+QE +C EKLP P
Sbjct: 94 SWKIVTWNVNGIRSW------------LKNGGLEYIEEEDADVYCLQETKCSEEKLP--P 139
Query: 794 E-----GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
E GY +++ G ++GY+GV ++S+ P+ V +G S++ EH S
Sbjct: 140 EVTNYKGYKSYFLAGDKEGYSGVGIMSRKTPLNVEYGLSLE---------------EHDS 184
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
+ GRV+T+E+E+F+LVN Y P A L L +L W+
Sbjct: 185 E-----------------------GRVITLEFEEFFLVNSYVPNAGRGLVRLDYRLTWDR 221
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
R +L L + K V+L GDLNVAHN ID+ P TN +GFT +ER ++ L+ GF+D
Sbjct: 222 DFRKYLVGLKKKKSVILTGDLNVAHNEIDLKNPKTNKKNAGFTEEERQGLTDLLEEGFVD 281
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R LYP YT+W Y + +K GWRLDYF++S+ L ++ D EI V GSDH P
Sbjct: 282 TFRKLYPEREGAYTFWTYMMNARAKNVGWRLDYFIVSEDLIDNVIDNEIRSTVMGSDHCP 341
Query: 1027 QILYL 1031
+L+L
Sbjct: 342 VVLHL 346
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ L D EIH +EGSDH P +L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIHSQIEGSDHCPVVLFLEF 251
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 206 bits (523), Expect = 7e-50, Method: Composition-based stats.
Identities = 118/309 (38%), Positives = 164/309 (53%), Gaps = 58/309 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
WN KI SWNV+G+R +K+G +++ Q D ++ C+QE +C + +P+
Sbjct: 12 WNLKIASWNVDGLRG------------TVKKNGHAYIPQEDPDIICLQETKCTEKDVPKE 59
Query: 792 ---CPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
EGYH +W+ P ++GYAG A+LSKTKP++VT+G G +EH
Sbjct: 60 FTATVEGYHGYWYSPTEKKGYAGTALLSKTKPIKVTYGI---------------GVDEHD 104
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
D+GRV+T E++ FY+V Y P A L L + W+
Sbjct: 105 -----------------------DEGRVITAEFDDFYMVTAYVPNAGRGLVRLDYRGTWD 141
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGF 966
+LK L++ KPVVL GDLNVAHN ID+ P N K+ GFT +ER F+ LD GF
Sbjct: 142 EAFTAYLKKLDKKKPVVLCGDLNVAHNEIDLKNPKGNKNKTPGFTDKEREGFTTLLDEGF 201
Query: 967 LDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
D +R LYP YT+W Y +K GWRLDYF++S +L L D I +V GSDH
Sbjct: 202 KDSYRELYPEETDCYTFWSYMGGARAKNVGWRLDYFVLSDRLMPQLCDNVIRSEVMGSDH 261
Query: 1025 APQILYLNL 1033
P +L L +
Sbjct: 262 CPIVLLLAM 270
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 205 bits (522), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 160/304 (52%), Gaps = 54/304 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
NFKI SWNVNG+RAW + N SF+ + D +VFCIQE +C L +P+
Sbjct: 4 NFKITSWNVNGLRAWLKNNSK------------SFVSKEDPDVFCIQETKCALADIPKEA 51
Query: 794 E--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
+ GYH +W ++GY+GV + SK +P++V++G G+ EH
Sbjct: 52 KLAGYHCYWNSAEQKGYSGVGLCSKKEPIKVSYGM---------------GNKEHDK--- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
+GRV+T EYE F+LV Y P + L L + WN
Sbjct: 94 --------------------EGRVITAEYEDFHLVTSYVPNSGRGLPRLGYRQQWNKDFL 133
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+LK L+EIKPV+L GDLNVAH ID+A P TN +GFT +ER F+ L GF D R
Sbjct: 134 SYLKKLDEIKPVILCGDLNVAHKDIDLANPKTNTRTAGFTKEERADFTTLLGEGFKDTFR 193
Query: 972 HLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
LYP+ + YT+W Y +K GWRLDYF++S +L + D I V GSDH P L
Sbjct: 194 ELYPDKKSAYTFWSYMGGARAKNVGWRLDYFVVSDRLVPKVCDSIIRSRVMGSDHCPLSL 253
Query: 1030 YLNL 1033
L++
Sbjct: 254 LLSI 257
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 165/302 (54%), Gaps = 57/302 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECP 793
K+ SWNVNG+RA QK GF +++Q + ++FC+QE + +++
Sbjct: 1 MKLVSWNVNGLRA-------------IQKKGFDEYLKQSNADIFCLQETKLQEDQISLVT 47
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGYH +W ++GY+G A+ SK +PV V G
Sbjct: 48 EGYHTYWSFAEKKGYSGTALFSKQEPVSVQRGIG-------------------------- 81
Query: 854 PSHPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
HP +D +GR +T E+EQFY+V Y P ++E L+ L ++ W+ R
Sbjct: 82 --HP------------LDNEGRTVTAEFEQFYVVCCYTPNSQEALARLDTRMDWDEAFRS 127
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
++ SL +KPV++ GDLNVAH ID+ P N +G++I+ERN F++ LD GF+D R+
Sbjct: 128 YVCSLASMKPVIICGDLNVAHQSIDLRHPKANERNAGYSIEERNQFTSLLDAGFIDTFRY 187
Query: 973 LYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
LYPN IY++W Y + GWR+DY+L+S++L+ + D I + +GSDHAP ILY
Sbjct: 188 LYPNREGIYSWWSYRFKARENNAGWRIDYWLVSEELRQSILDSTIDTETQGSDHAPVILY 247
Query: 1031 LN 1032
LN
Sbjct: 248 LN 249
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 165/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIR S V K F F ++ D ++FCIQE + ++ EG
Sbjct: 2 KLISWNVNGIR--SCVTKGFLEYF----------KEMDADIFCIQESKLQEGQIDLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K KP+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEKPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P +K +L+ L +++W R +LK
Sbjct: 89 -----------------GRVITLEFENFYMVTVYTPNSKNELARLDYRMVWEDAFRDYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P TNL +GFT +ER+ F+ L+ GF+D R+ YP
Sbjct: 132 VLDEKKPVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGFVDTFRYFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y ++ +K GWR+DYFL+S +K L D +IH +V GSDH P L +NL
Sbjct: 192 DEVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVLGSDHCPVELKINL 251
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 159/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K F + D ++FCIQE + ++ E
Sbjct: 2 KIVSWNVNGIRA------------CVKKGFMDFFKDVDADIFCIQESKLQEGQIQLDLEN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G AV +K +P+ V++G G D
Sbjct: 50 YHQYWNYAERKGYSGTAVFTKQEPLSVSYGI--------------------GED----DD 85
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE GR +T+E+E FYL+NVY P +K DLS L +L W +R ++K
Sbjct: 86 EPE--------------GRCITLEFEDFYLLNVYTPNSKRDLSRLEDRLHWEERVRAYIK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+EIKPV+ GDLNVAHN ID+ P +N G SGFT +ER S L+ GF+D RHLYP
Sbjct: 132 ELDEIKPVIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEGFVDSFRHLYP 191
Query: 976 NH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W Y + + GWR+DYF++S +LK L D +H DV GSDH P + ++
Sbjct: 192 EKDQSYTWWSYMSKVRERNIGWRIDYFIVSDRLKDSLKDAGMHTDVLGSDHCPVYIEIDF 251
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L L+
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLILDF 251
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLTVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L L+
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLILDF 251
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 165/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFVDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L L+
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLILDF 251
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. polymorphum
F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. polymorphum
F0401]
Length = 253
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 166/300 (55%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSEGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y K GWR+DYF++SK L+ +L D EIH EGSDH P +L+L+L
Sbjct: 192 NLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIHSQTEGSDHCPVVLFLDL 251
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 152/299 (50%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F Q D ++FCIQE + +L EG
Sbjct: 2 KFISWNVNGIRA------------CVQKGFLEFFSQADADIFCIQETKMQEGQLSLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV SK +P+ V +G G EH
Sbjct: 50 YHQYWNYAVKKGYSGTAVFSKIEPLSVVYGI---------------GIEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EYE FY V VY P A+ +L+ L ++ W R LK
Sbjct: 88 ----------------EGRVITLEYEDFYFVTVYTPNAQNELARLDYRMKWEDDFRAWLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVV+ GD+NVAH ID+ P TN +GF+ +ER F+ LD GF+D R+ YP
Sbjct: 132 KLEENKPVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKFTELLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y R K GWR+DYF +S+ LK L D I D+ GSDH P +L +N
Sbjct: 192 DQEGIYSWWSYRFRAREKNAGWRIDYFCVSECLKDRLVDAGILTDIMGSDHCPVVLEMN 250
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 56/307 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
WN K+ SWNVNGIRA + + G ++++ + ++FCIQE +CPL K+P
Sbjct: 63 WNLKLVSWNVNGIRA------------VIKNGGMEYIKKENADIFCIQETKCPLHKIPSE 110
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ Y +FW + GYAG A+ SK P +VT+G KV
Sbjct: 111 AKLPSYQSFWSSADKAGYAGTALFSKIAPKKVTYGIGRKV-------------------- 150
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSF 909
H E +GRV+T E+++FYLV Y P A + L+ L + W+
Sbjct: 151 -----HDE-------------EGRVITAEFDRFYLVTAYVPNAGQGLARLPYREKEWDPD 192
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DLGFLD 968
+L+ L+ KPV++ GDLNVAH ID+A P TN +GFT QER+ F+ L +D
Sbjct: 193 FLEYLRKLDATKPVIVCGDLNVAHEEIDLARPDTNHKTAGFTDQERSGFTKLLSSANLID 252
Query: 969 VHRHLYPNHR-IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+RH YP+ R Y++W Y + GWRLDYFL+S+++ +++ D EI V GSDH P
Sbjct: 253 TYRHFYPDRREAYSFWSYRTGARLINNGWRLDYFLVSQRILANVGDQEIRCGVTGSDHCP 312
Query: 1027 QILYLNL 1033
+LYL++
Sbjct: 313 VVLYLHI 319
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus CASD]
Length = 253
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQK-DGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG RA LQ+K D FS++++ + CIQE + +++
Sbjct: 2 KFISWNVNGFRA------------LQRKMDVFSWLKETGADALCIQETKLHQDQVQIDTP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH FW R+GY+G A+ +K KP+RVT+G ++V
Sbjct: 50 GYHQFWNDAVRKGYSGTAIFTKNKPLRVTYGMGIEV------------------------ 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
H + +GR++T+EYE +YLV VY P AK DL+ L+ +L W + ++
Sbjct: 86 -HDQ-------------EGRLITLEYEDYYLVTVYTPNAKRDLTRLAYRLEWGAAFTDYM 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P N G SGFTI+ER F+ L+ GF+D RHLY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDFTALLNNGFVDSFRHLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W + ++ + GWR+DYF++SK L S + D ++ ++ GSDH P L L+
Sbjct: 192 PERTDAYSWWSFLFNARERNIGWRIDYFVLSKCLSSSIRDAKLLTEIYGSDHCPVELDLD 251
Query: 1033 L 1033
L
Sbjct: 252 L 252
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 153/308 (49%), Gaps = 60/308 (19%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
+NFKI SWNV G+R+W K G F ++ CIQE +C ++LPE
Sbjct: 358 FNFKISSWNVAGLRSWVG------------KGGLDFFEHEKPDILCIQETKCVDDQLPEE 405
Query: 793 P---EGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+GYH +W PG GYAGVA+ SK P VT+G G E
Sbjct: 406 VRHIKGYHPYWLCKPG---GYAGVAIYSKKMPFNVTYGL---------------GDEEQ- 446
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
DA DGR++T EYE+F+LV VY P A L L ++ W+
Sbjct: 447 ------------------DA----DGRLLTAEYEKFFLVCVYVPNAGRGLVTLPKRMRWD 484
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+LK L+ KPV+L GD+NVAH ID+A P TN +GFT +ER + L LGF+
Sbjct: 485 EKFHKYLKDLDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTKLLSLGFV 544
Query: 968 DVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D R LYP YT+W Y +K GWRLDYF+ S++ + D I V GSDH
Sbjct: 545 DTFRQLYPEQSGAYTFWTYMGNARAKNVGWRLDYFITSERFVGKVVDNVIRSGVYGSDHC 604
Query: 1026 PQILYLNL 1033
P L+L +
Sbjct: 605 PLTLFLKV 612
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 164/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPLTVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P +K+ L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSKDKLLRLDYRMTWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + K VV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 NLEKKKAVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N ++Y++W Y R + GWR+DYF++SK L+ +L D EIH +EGSDH P +L L+L
Sbjct: 192 NLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEGSDHCPVVLILDL 251
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY++ VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMITVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLESGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y K GWR+DYF++SK L+ +L D EIH EGSDH P +L+L+
Sbjct: 192 DLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQTEGSDHCPVVLFLDF 251
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F Q D ++FC+QE +C ++ +G
Sbjct: 2 KLISWNVNGIRA--CLKKGFMEYFEAQ----------DADIFCLQETKCSAGQVELDLKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTAIFTKKEPISVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P +K +L L +++W R +L
Sbjct: 89 -----------------GRVITLEFEDFYMVTVYTPNSKNELERLDYRMIWEDEFRSYLA 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE KPVV+ GD+NVAH ID+ P TN +GFT +ER F+ L GF D R+LYP
Sbjct: 132 KLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERTKFTELLKAGFTDSFRYLYP 191
Query: 976 NH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y K GWR+DYF++S K + + EIH + EGSDH P LYL
Sbjct: 192 DRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHAEQEGSDHCPVALYL 249
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 156/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F Q D ++FC+QE +C ++ +G
Sbjct: 2 KLISWNVNGIRA--CLKKGFMEYFEAQ----------DADIFCLQETKCSAGQVELDLKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTAIFTKKEPISVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P +K +L L +++W R +L
Sbjct: 89 -----------------GRVITLEFEDFYMVTVYTPNSKNELERLDYRMVWEDEFRSYLA 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE KPVV+ GD+NVAH ID+ P TN +GFT +ER+ F+ L GF D R+LYP
Sbjct: 132 KLNEAKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKFTELLKAGFTDSFRYLYP 191
Query: 976 NH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y K GWR+DYF++S K + + EIH + EGSDH P LYL
Sbjct: 192 DRLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHAEQEGSDHCPVALYL 249
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K FT F Q D + FCIQE + ++ PEG
Sbjct: 2 KFISWNVNGLRA--CVKKGFTE----------FFEQTDADFFCIQETKLQEGQIDFEPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 50 YFCYWNYAVKKGYSGTAIFAKKEPLSVQYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EYE FY+V VY P ++ +L+ LS ++ W R +L+
Sbjct: 89 -----------------GRVITLEYENFYMVTVYTPNSQSELARLSYRMQWEDDFRAYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P TN +GFT +ER F+ FLD GF D R+ YP
Sbjct: 132 QLDEKKPVIMCGDLNVAHQEIDLKNPKTNRHNAGFTDEEREKFTTFLDAGFTDTFRYFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF SK+L L IH D+ GSDH P
Sbjct: 192 DKTEIYSWWSYRFKAREKNAGWRIDYFCTSKRLDEKLLSASIHTDIFGSDHCP 244
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 163/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA VNK F F ++ D ++FCIQE + ++ EG
Sbjct: 3 KLISWNVNGLRA--CVNKGFLEYF----------KEADADIFCIQESKLQEGQIDLKLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K +P+ V +G G +EH ++
Sbjct: 51 YKDYWNYAEKKGYSGTAVFTKEEPISVKNGI---------------GISEHDTE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+++FYLVNVY P +K+ L L +++W R +LK
Sbjct: 90 -----------------GRVITLEFKEFYLVNVYTPNSKQGLERLDYRMVWEDVFRKYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P N +GFT +ERN S L+ GF+D +R+ YP
Sbjct: 133 ELEEKKPVIICGDLNVAHEDIDLKNPKANRKNAGFTDEERNKISELLEAGFIDTYRYFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N +Y++W Y ++ GWR+DYFL S+ LK L D +IH +V GSDH P + +NL
Sbjct: 193 NTEGVYSWWSYRFNARGNNAGWRIDYFLASESLKDKLVDAKIHMNVMGSDHCPVEVMVNL 252
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 166/313 (53%), Gaps = 55/313 (17%)
Query: 725 KRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC 784
K D +N KI +WNV+GIRA + +K+G +++ + D ++ +QE +C
Sbjct: 130 KVNADGEKYNIKICTWNVSGIRA------------VLKKNGMTYLEREDADIIALQETKC 177
Query: 785 PLEKLPE--CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRG 842
+K+P+ +GY ++ + GY G+A+ SK +P+ ++ G
Sbjct: 178 ETKKIPDEVKLKGYTRYFLDSKKAGYCGMALYSKKEPIDISMGL---------------- 221
Query: 843 SNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSV 902
D D+GR++T EYE FYLVNVY P A L L
Sbjct: 222 -----------------------DEEFDDEGRLITAEYEHFYLVNVYVPNAGNKLVTLPK 258
Query: 903 KLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962
+L WN + H++ L++ KPV++ GD+NVAH ID+ P TN +GFT +ER+ ++FL
Sbjct: 259 RLKWNEAFKKHIQDLDKKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFL 318
Query: 963 DLGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVE 1020
GF+D R LYP+ YT+W Y++ SK GWRLDY+++S+++K+ + D+ V
Sbjct: 319 QAGFVDTFRLLYPDKTDAYTFWAYFNNARSKNIGWRLDYYIVSEKIKNKVCDVVNRDQVF 378
Query: 1021 GSDHAPQILYLNL 1033
GSDH P + Y NL
Sbjct: 379 GSDHCPVVFYANL 391
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 160/293 (54%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F +Q ++FC+QE + E++P EG
Sbjct: 2 KLISWNVNGLRA--CLNKGFMDFF----------QQEQADIFCLQETKLQEEQIPFQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHA+W ++GY+G AV +K +P+ V++G G EH
Sbjct: 50 YHAYWNFAQKKGYSGTAVFAKKEPLSVSYGI---------------GQEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E++ FYLV VY P ++ DL+ L +++W + G+LK
Sbjct: 88 ----------------EGRVITLEFDTFYLVTVYTPNSQRDLARLDYRMIWEAEFLGYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV+L GDLNVAH ID+ P TN +GFT +ER FS L GF+D RH P
Sbjct: 132 NLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKFSELLKNGFIDTFRHFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ + YT+W Y ++ + GWR+DYF +S+ LK+ L D I+ + GSDH P
Sbjct: 192 DKKEAYTWWSYMFNARANNAGWRIDYFCVSESLKNELKDAMIYDQIMGSDHCP 244
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 160/293 (54%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F +Q ++FC+QE + E++P EG
Sbjct: 2 KLISWNVNGLRA--CLNKGFMDFF----------QQEQADIFCLQETKLQEEQIPFQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHA+W ++GY+G AV +K +P+ V++G G EH
Sbjct: 50 YHAYWNFAQKKGYSGTAVFAKQEPLSVSYGI---------------GQEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E++ FYLV VY P ++ DL+ L +++W + G+LK
Sbjct: 88 ----------------EGRVITLEFDTFYLVTVYTPNSQRDLARLDYRMIWEAEFLGYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV+L GDLNVAH ID+ P TN +GFT +ER FS L GF+D RH P
Sbjct: 132 NLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKFSELLKNGFIDTFRHFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ + YT+W Y ++ + GWR+DYF +S+ LK+ L D I+ + GSDH P
Sbjct: 192 DKKEAYTWWSYMFNARANNAGWRIDYFCVSESLKNELKDAMIYDQIMGSDHCP 244
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 166/305 (54%), Gaps = 54/305 (17%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
+N KI +WNV+GIRA + +K+G ++ + D ++ +QE +C +K+P+
Sbjct: 73 YNLKICTWNVSGIRA------------VIKKNGLDYIAKEDADIIALQETKCGKDKMPDE 120
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GYH ++ + GY GVA+ K KPV V +G + S+
Sbjct: 121 IKLSGYHHYFLDSKQSGYCGVALFCKEKPVSVKYGL-------------------NNSNF 161
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
+S +GR++ E+ +F++VNVY P A + L L +L WN
Sbjct: 162 DS-------------------EGRIIAAEFPEFFMVNVYVPNAGQKLVTLPKRLEWNKIF 202
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +++ L++ KPV++ GD+NVAH ID+ P TN +GFT +ER+ ++FL GF+D
Sbjct: 203 KKYIEELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLAAGFIDTF 262
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYP+ YT+W Y+ + +K GWRLDYFL S+++K+ + D I V GSDH P I
Sbjct: 263 RLLYPDKEGAYTFWSYFANARNKDIGWRLDYFLASERIKNKICDNIIRKQVYGSDHCPVI 322
Query: 1029 LYLNL 1033
LY NL
Sbjct: 323 LYANL 327
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 163/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY++ VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMITVYTPNSKDELLRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLESGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y K GWR+DYF++SK L+ +L D EIH EGSDH P +L+L+
Sbjct: 192 DLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQTEGSDHCPVVLFLDF 251
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 162/296 (54%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLVSWNVNGLRA--CVKKGFLDYF----------HEMDADIFCVQETKLQEGQIELDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW ++GY+G AV +K KP+ V++G
Sbjct: 50 YHQFWNYAIKKGYSGTAVFTKKKPLSVSYGV----------------------------- 80
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
AD + D+GR++T+E+E FYL+NVY P ++ DL+ L +L W +R +L
Sbjct: 81 ---------ADENEEDEGRILTLEFEDFYLINVYTPNSQRDLARLHFRLNWEDRIREYLI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN++KP+VL GDLNVAH+ ID+ +N G SGFT +ER ++ L+ GF+D R+ YP
Sbjct: 132 QLNKLKPIVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDLLNSGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ YT+W Y + K GWR+DYF++S++LK L D +IH V GSDH P +L
Sbjct: 192 DMTDKYTWWSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVMGSDHCPVVL 247
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSAGQLDLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY++ VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMITVYTPNSKDELQRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF D R+ YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLESGFTDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y K GWR+DYF++SK L +L D EIH EGSDH P +L+L+
Sbjct: 192 DLEHAYSWWSYRANARKNNTGWRIDYFIVSKALDKYLVDAEIHAQTEGSDHCPVVLFLDF 251
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F Q D ++FC+QE +C ++ +G
Sbjct: 2 KLISWNVNGIRA--CLKKGFMEYFQAQ----------DADIFCLQETKCSAGQVELDLKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLSVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+ +E+E FY+V VY P +K +L L +++W R +L
Sbjct: 89 -----------------GRVICLEFEDFYMVTVYTPNSKNELERLDYRMIWEDEFRNYLS 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE KPVV+ GD+NVAH ID+ P TN +GFT +ERN F+ L GF D R+LYP
Sbjct: 132 KLNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNKFTELLQAGFTDSFRYLYP 191
Query: 976 NH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y K GWR+DYF++S K + + EIH + EGSDH P LYL
Sbjct: 192 DTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHAEQEGSDHCPVALYL 249
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA +K F ++ D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGIRA------------CVKKGFLDFFKETDADIFCLQETKLQEGQIELELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKQEPLSVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ FY+V VY P +K +L L +++W R +L
Sbjct: 89 -----------------GRVITLEFDNFYMVTVYTPNSKNELLRLDYRMVWEDEFRSYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE KPV++ GDLNVAH ID+ P TN +GFTI+ER S LD GF+D R YP
Sbjct: 132 RLNETKPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTLLDSGFIDTFRFFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ GWR+DYFL S++LK +L D +IH D+ GSDH P
Sbjct: 192 ELEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDILGSDHCP 244
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 56/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA VNK F F R+ D + FC+QE +C + ++ EG
Sbjct: 2 KFISWNVNGIRA--CVNKGFLDYF----------REMDADFFCLQETKCQVGQIDLQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K +P+ V +G ++
Sbjct: 50 YYQYWHSAVKKGYSGTAVFTKHEPLAVYYGIENEIAA----------------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR++T+EYE FYLVN Y P AK DL+ L +LLW +R +LK
Sbjct: 87 ---------------DEGRILTLEYENFYLVNTYTPNAKRDLTRLEERLLWEDRMRIYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+ GDLNVAH+ +D+ +N+G SGFT +ER ++ L GF D RH +P
Sbjct: 132 ELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKMTDLLTSGFTDTFRHFHP 191
Query: 976 ---NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+H +T+W Y + + GWR+DYF+IS +L + + IH ++ GSDH P +L L
Sbjct: 192 DVTDH--FTWWSYMAKVRERNIGWRIDYFIISDRLVEKIEEASIHSEILGSDHCPIVLKL 249
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 199 bits (505), Expect = 1e-47, Method: Composition-based stats.
Identities = 109/293 (37%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F R+ D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLEFFREADADIFCLQETKLQAGQIELDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K KP+ +T+G G EH +
Sbjct: 50 YEQYWNYAVKKGYSGTAVFTKKKPLNMTYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY V VY P ++ +L+ L ++ W S +LK
Sbjct: 89 -----------------GRVITLEFEEFYFVTVYTPNSQNELARLDYRMKWESDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEMLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L+D +I DV GSDH P
Sbjct: 192 DQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLADAKILTDVMGSDHCP 244
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 56/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA VNK F F R+ D + FC+QE +C + ++ EG
Sbjct: 2 KFISWNVNGIRA--CVNKGFLDYF----------REMDADFFCLQETKCQVGQIDLQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K +P+ V +G ++
Sbjct: 50 YYQYWHSAVKKGYSGTAVFTKHEPLAVYYGIENEIAA----------------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR++T+EYE FYLVN Y P AK DL+ L +LLW +R +LK
Sbjct: 87 ---------------DEGRILTLEYENFYLVNTYTPNAKRDLTRLEERLLWEDRMRIYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+ GDLNVAH+ +D+ +N+G SGFT +ER ++ L GF D RH +P
Sbjct: 132 ELDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKMTDLLTSGFTDTFRHFHP 191
Query: 976 ---NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+H +T+W Y + + GWR+DYF+IS +L + + IH ++ GSDH P +L L
Sbjct: 192 DVTDH--FTWWSYMAKVRERNIGWRIDYFIISDRLVEKVEEASIHSEILGSDHCPIVLKL 249
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F ++ D ++FCIQE + ++ EG
Sbjct: 2 KLISWNVNGIRA------------CVQKGFCDFFKEVDADIFCIQESKLQAGQIELDFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P++VT+G G EH +
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKKEPLQVTYGM---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P ++ +L+ LS ++ W R LK
Sbjct: 89 -----------------GRVITLEFEDFYMVTVYTPNSQNELARLSYRMEWEDEFRRFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVV+ GDLNVAH ID+ P TN +GFTI+ER FS L+ GF+D R+ YP
Sbjct: 132 KLEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELLEAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y + K GWR+DYFL S+ L+S L +IH + GSDH P
Sbjct: 192 DAMDMYSWWSYRFKAREKNTGWRIDYFLASQGLESKLVSAKIHSQILGSDHCP 244
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 157/292 (53%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F IF + D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRA--SVTKGFEDIF----------KTLDADFFCLQETKMQAGQLDLQFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ V +G +G H H
Sbjct: 50 YESYWNYADKKGYSGTAIYTKHSPLSVQYG----IGIDQHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+EQFYLV VY P ++++L L ++ W + +L
Sbjct: 88 ----------------EGRVVTLEFEQFYLVTVYTPNSQDELKRLDYRMEWERDFQAYLV 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPVV+ GD+NVAH ID+ P TN +GFT +ER +N LD GF+D R+LYP
Sbjct: 132 KLDASKPVVVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTNLLDNGFIDTFRYLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYFLIS++LKS+L+D +IH D+ GSDH P
Sbjct: 192 EEVTYSWWSYRFKAREKNTGWRIDYFLISERLKSNLTDAKIHTDIFGSDHCP 243
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K F ++ D ++FCIQE + ++ +G
Sbjct: 3 KLISWNVNGLRA------------CVKKGFLDFFKESDADIFCIQETKLQEGQIDLDLDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
++++W ++GY+G AV +K +P+ S+K+G + H
Sbjct: 51 FNSYWNYAEKKGYSGTAVFTKEEPL------SVKIGIGIEEHD----------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+E+ FYLVNVY P +K+ L L +++W R +LK
Sbjct: 88 ---------------NEGRVLTLEFNDFYLVNVYTPNSKQGLERLDYRMVWEDVFRQYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH ID+ P N +GFT +ER + LD GF+D +R YP
Sbjct: 133 ELEKKKPVILCGDLNVAHKEIDLKNPKVNRKNAGFTDEEREKITQLLDSGFIDTYRFFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y ++ + GWR+DYFL+S+ LK L D +IH D+EGSDH P L +NL
Sbjct: 193 DKEGAYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMDIEGSDHCPVELLINL 252
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 197 bits (502), Expect = 2e-47, Method: Composition-based stats.
Identities = 109/293 (37%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F R+ D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLEFFREADADIFCLQETKLQAGQIELDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K KP+ VT+G G EH +
Sbjct: 50 YEQYWNYAVKKGYSGTAVFTKKKPLNVTYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY V VY P ++ +L+ L ++ W S +LK
Sbjct: 89 -----------------GRVITLEFEEFYFVTVYTPNSQNELARLDYRMKWESDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 KLEEEKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEMLNAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L+D +I DV GSDH P
Sbjct: 192 DQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLADAKILTDVMGSDHCP 244
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 163/300 (54%), Gaps = 38/300 (12%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNG+RA L++ F+ H +V C+QE + E++ G
Sbjct: 2 KIYSWNVNGLRA-----------VLKKGLFMPFIETHQPDVLCLQETKSEREQVEIDLAG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W T +GY+G A+ S+T+P+ VT+GF+ V
Sbjct: 51 YHEYWNSATTKGYSGTAIFSRTEPLSVTNGFAKAVA------------------------ 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHL 914
+ T + A +GRV+T E+E+F++V VY P AK+DLS L ++ W++ H
Sbjct: 87 -KKYTLVDDAGRDSETEGRVITAEFEKFFVVTVYTPNAKDDLSRLPLRSQHWDAAFLAHC 145
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPVV GDLNVAH +D+A P N G+ GFT +ER F +FLD GF+D R +
Sbjct: 146 KALEMKKPVVFCGDLNVAHTELDLANPKPNRGRKGFTDEERQGFQSFLDAGFVDTLRMFH 205
Query: 975 PNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W ++ + ++ GWR+DY L+S L+ ++ EIH DV GSDH P + L+L
Sbjct: 206 QGNGHYSWWSHFANSRARNVGWRIDYVLVSAALQKSVATAEIHADVMGSDHCPVSVTLSL 265
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F +Q + ++FC+QE + +L +G
Sbjct: 2 KLISWNVNGIRA--AIKKGFLDYFNEQ----------NADIFCLQETKLSEGQLDLDLKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY++ VY P +K++L L +++W R +LK
Sbjct: 89 -----------------GRVITLEFEKFYMITVYTPNSKDELQRLDYRMVWEDEFRKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GFT +ER F+ L GF D RH YP
Sbjct: 132 NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLAAGFTDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y K GWR+DYF++S L +L D EIH EGSDH P +L+L
Sbjct: 192 DLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIHAQTEGSDHCPVVLFLEF 251
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/306 (35%), Positives = 156/306 (50%), Gaps = 55/306 (17%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDG-FSFMRQHDLNVFCIQEIRCPLEKLP 790
P NFKI WNVNG++ N + K+G ++ +V CIQE +C ++P
Sbjct: 175 PINFKIACWNVNGLK-----NAI--------KEGCLQYLEYEKPDVLCIQETKCGEGEIP 221
Query: 791 E--CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
GY+ +W+ ++GYAG + SKT+P+RV+ G ++
Sbjct: 222 ADSAVPGYYGYWYSAQKRGYAGTGMYSKTQPIRVSFGLNV-------------------- 261
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
PE T +GRV+T E+ FYLV Y P + + L L + W+
Sbjct: 262 --------PEHDT----------EGRVITAEFADFYLVTAYVPNSGQKLETLPYRQTWDV 303
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
R +L SL+ KPVVL GDLNVAHN ID+ P TN +GFT QER F+ L F+D
Sbjct: 304 AFRTYLLSLDAKKPVVLCGDLNVAHNEIDLKNPKTNKRSAGFTPQEREGFTTILGTEFVD 363
Query: 969 VHRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
R LYP Y++W Y + GWRLDYF++S++ ++D +I V GSDH P
Sbjct: 364 SFRVLYPEESAYSFWSYRHNSRALNVGWRLDYFVVSQRFMQSVADSQIRSQVYGSDHCPI 423
Query: 1028 ILYLNL 1033
+L+L+L
Sbjct: 424 VLHLSL 429
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 165/301 (54%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA V K F F Q D +VFCIQE + ++ +
Sbjct: 1 MKLVSWNVNGIRA--CVGKGFLDYFYQI----------DADVFCIQETKLQEGQISLELK 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
+ +W ++GY+G A+ SK KP+ V +G G+ EH S+
Sbjct: 49 DHSQYWNYAVKKGYSGTAIFSKKKPLSVQYGI---------------GTTEHDSE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR +T+E+E+FYLVN+Y P ++ DL+ L+ ++ W +LR L
Sbjct: 89 ------------------GRAITLEFEEFYLVNIYTPNSQRDLARLNYRVAWEDYLREFL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV+L GD+NVAH+ ID+ P +N+ SGFT +ER + L+ GF+D RHL
Sbjct: 131 QELDTKKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTELLNNGFVDTFRHLN 190
Query: 975 P-NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P +YT+W Y ++ + GWR+DYFL+S++L+ + D ++H D+ GSDH P +L ++
Sbjct: 191 PEKENVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHSDIMGSDHCPVLLEID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F + D ++FCIQE + +L G
Sbjct: 4 KFVSWNVNGIRA------------CVQKGFLDFFTEADADIFCIQESKMQEGQLELDLPG 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P+ VT+G G EH +
Sbjct: 52 YHQYWNYAVKKGYSGTAVFTKKEPLSVTYGI---------------GIEEHDQE------ 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FY V VY P ++ +L+ L ++ W R +LK
Sbjct: 91 -----------------GRVITCEFEDFYFVTVYTPNSQNELARLDYRMRWEDDFRMYLK 133
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GD+NVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 134 KLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDTFRYFYP 193
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L D +I DV GSDH P
Sbjct: 194 DREGIYSWWSYRFSARAKNAGWRIDYFCVSESLKERLKDAKILTDVMGSDHCP 246
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F + D ++FCIQE + +L G
Sbjct: 2 KFVSWNVNGIRA------------CVQKGFLDFFTEADADIFCIQESKMQEGQLELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P+ VT+G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTAVFTKKEPLSVTYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FY V VY P ++ +L+ L ++ W R +LK
Sbjct: 89 -----------------GRVITCEFEDFYFVTVYTPNSQNELARLDYRMRWEDDFRMYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GD+NVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 KLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L D +I DV GSDH P
Sbjct: 192 DREGIYSWWSYRFSARAKNAGWRIDYFCVSESLKERLKDAKILTDVMGSDHCP 244
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 197 bits (500), Expect = 4e-47, Method: Composition-based stats.
Identities = 115/312 (36%), Positives = 156/312 (50%), Gaps = 57/312 (18%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
D P+NFK+ SWNV+G+RAW + K G +++ +V C+QE +C E
Sbjct: 39 DGRPYNFKVTSWNVDGLRAWVR------------KGGLQWLQSEAPDVVCLQETKCGAES 86
Query: 789 LP----ECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGS 843
+P + P H FW R GY+GV +LS+T P+RVTHG G
Sbjct: 87 IPSELSQLPHLPHKFWGSAVGRSGYSGVGLLSRTAPIRVTHGI---------------GI 131
Query: 844 NEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK 903
EH ++ GRV+T E+ Y+V+ Y P + L+ L +
Sbjct: 132 EEHDAE-----------------------GRVLTAEFPSVYVVSAYVPNSGRGLNRLQYR 168
Query: 904 LLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD 963
W+ + L+ L+ KPVVL GDLNVAH ID+ P +N GFT +ER+ F LD
Sbjct: 169 QRWDGAFKSFLQRLDAQKPVVLCGDLNVAHREIDLRNPKSNRRSPGFTQEERDAFGALLD 228
Query: 964 LGFLDVHRHLYPN-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
GFLD R LYP+ YT+W Y + GWRLDYFL+S +L+ L D +I G
Sbjct: 229 GGFLDSFRLLYPDVPNAYTFWTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRSAAMG 288
Query: 1022 SDHAPQILYLNL 1033
SDH P LYL L
Sbjct: 289 SDHCPITLYLAL 300
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK KP+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKKPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K+ +++ EI+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKNQITEAEINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRTYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +RHLY
Sbjct: 132 KQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDTYRHLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K ++D +I+ ++ GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKGQITDAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 157/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F ++ D ++FCIQE + ++ EG
Sbjct: 3 KLISWNVNGLRA------------CAGKGFLDFFKEVDADIFCIQESKLQEGQIDLDLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G AV +K +P+ V G G +EH
Sbjct: 51 YKSYWNYAEKKGYSGTAVFTKEEPISVKKGI---------------GISEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T EY+ FYLV VY P +K+ L L +++W R +LK
Sbjct: 88 ---------------NEGRVITAEYDDFYLVTVYTPNSKQALERLDYRMVWEDVFRKYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P N +GFT +ER+ S L+ GF+D +RH YP
Sbjct: 133 ELEEKKPVIVCGDLNVAHKEIDLKNPKANRRNAGFTDEERDKMSELLEAGFIDTYRHFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ + GWR+DYFL S+ LK L +IH +V GSDH P L +NL
Sbjct: 193 DVEGVYSWWSYRFNARANNAGWRIDYFLTSESLKDKLEAAKIHTEVMGSDHCPVELVINL 252
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 161/301 (53%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA V K F F ++ D ++FCIQE + ++ E
Sbjct: 1 MKLVSWNVNGIRA--CVKKGFMDYF----------KEVDADIFCIQESKLQEGQIELILE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV +K +P+ V +G G NE
Sbjct: 49 GYHQYWNYAIKKGYSGTAVFTKKEPLSVRYGL---------------GDNE--------- 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ PE GR++T+EYE FYLVNVY P ++ DL+ L +L W +R +L
Sbjct: 85 TEPE--------------GRILTLEYEGFYLVNVYTPNSQRDLARLPYRLEWEERIREYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++IKPV++ GDLNVAH ID+ +N G SGFT +ER + L GF+D R+ Y
Sbjct: 131 LGLDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGFVDAFRYKY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P YT+W Y + + GWR+DYF++S++LK + D +IH D+ GSDH P L L
Sbjct: 191 PEAEGAYTWWSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIHCDIMGSDHCPVALELE 250
Query: 1033 L 1033
+
Sbjct: 251 I 251
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 161/301 (53%), Gaps = 59/301 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-----LEKLP 790
K+ SWNVNG+RA QK + ++ + ++FCIQE + LE+L
Sbjct: 2 KLVSWNVNGLRA------------CLQKGFMDYFKKVNADIFCIQETKLQPHQTDLEELN 49
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EGY+AFW ++ Y+G AV +K KP+ V +G +
Sbjct: 50 --LEGYYAFWNFAEKKAYSGTAVFTKYKPLSVNYGIGI---------------------- 85
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
P H ++GRV+T+EYE+FYLVN Y P ++ L+ LS ++ W
Sbjct: 86 ---PQHD-------------NEGRVITLEYEKFYLVNTYTPNSQRGLTRLSYRMEWEEDF 129
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
R +L L+ +KP++L GDLNVAH ID+ P N +GFT +ER + L+ GF+D
Sbjct: 130 RNYLLKLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMTMLLNSGFIDTF 189
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+ YP+ + YT+W Y + K GWR+DYF++S++LK +L D EIH DV GSDH P +
Sbjct: 190 RYFYPHKKDAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVMGSDHCPVV 249
Query: 1029 L 1029
L
Sbjct: 250 L 250
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 196 bits (498), Expect = 6e-47, Method: Composition-based stats.
Identities = 110/298 (36%), Positives = 159/298 (53%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F IF R+ D ++FC+QE + +L +G
Sbjct: 2 KLVSWNVNGLRAC--VQKGFQDIF----------REIDADIFCVQETKMQEGQLDLELDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K +P+ VT+G G EH +
Sbjct: 50 YYQYWNYAVKKGYSGTAVFTKQEPIGVTYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FY V VY P ++ +L L ++ W R +LK
Sbjct: 89 -----------------GRVITCEFEDFYFVTVYTPNSQNELKRLDYRMRWEDDFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+E KPVV+ GD+NVAH ID+ P +N +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 ALDEKKPVVVTGDMNVAHAEIDLKNPKSNRQNAGFTDEERGKFTELLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ IY++W Y + K GWR+DYF +S+++K LSD +I D+ GSDH P L L
Sbjct: 192 DQEGIYSWWSYRFKAREKNAGWRIDYFCVSERMKDRLSDAKILTDIYGSDHCPVCLEL 249
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 159/294 (54%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K+GF F + + +VFCIQE + E++P +
Sbjct: 2 KLISWNVNGLRA-------------CVKNGFLDFFTKENADVFCIQETKIQEEQIPFQLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+++W ++GY+G A+ SKT+P+ V++G M+ EH D E
Sbjct: 49 GYYSYWNFAQKKGYSGTAIFSKTEPINVSYGIGME---------------EH--DQE--- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EYE F+LV VY P ++ L+ L ++ W +L
Sbjct: 89 ------------------GRVITLEYEPFFLVTVYTPNSQRGLARLDYRMKWEDDFLAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L + KP++ GDLNVAH ID+ P TN +GFT +ER+ FS L+ GF+D R Y
Sbjct: 131 KTLEKSKPIIFCGDLNVAHQEIDLKNPKTNKKNAGFTSEERDKFSQVLNHGFIDSFRFFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P R YT+W Y ++ + GWR+DYF +S LK L ++ I+ DV GSDH P
Sbjct: 191 PEQRDAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQLKNVSIYSDVYGSDHCP 244
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus adamanteus]
Length = 316
Score = 196 bits (497), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 157/308 (50%), Gaps = 57/308 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-- 790
+ K+ SWNV+GIRAW + K G ++ + D +V C+QE +C ++LP
Sbjct: 59 YTLKVTSWNVDGIRAWVK------------KKGLEWVNKEDPDVLCLQETKCAEKQLPAD 106
Query: 791 --ECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+ E H FW ++GY+GVA+LSK KP+ VT+G G EH
Sbjct: 107 IRDLAEYPHKFWACSNDKEGYSGVALLSKNKPLDVTYGI---------------GEEEHD 151
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+ GRV+T E+ ++LV Y P A L L + W+
Sbjct: 152 KE-----------------------GRVITAEFSSYFLVTTYVPNAGRGLVRLEYRQRWD 188
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
R +LK L KP++L GDLNVAH ID+ P N +GFT +ER F+ L+ GF+
Sbjct: 189 EAFRSYLKGLAARKPLILCGDLNVAHQEIDLKNPKGNKKNAGFTPEERAGFTQLLEAGFV 248
Query: 968 DVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D RHLYPN YT+W Y + +K GWRLDYF++SK+L+ L D +I GSDH
Sbjct: 249 DTFRHLYPNTPYAYTFWTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRSTALGSDHC 308
Query: 1026 PQILYLNL 1033
P LY+ +
Sbjct: 309 PITLYVAM 316
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA +K + ++ + +VFCIQE + ++ E
Sbjct: 1 MKLISWNVNGIRA------------CVRKGFLDYFQEVNADVFCIQETKLQEGQIDLQLE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G AV +K KP+ V++G G + E
Sbjct: 49 GYYQYWNYAVKKGYSGTAVFTKQKPLSVSYGV--------------------GKESE--- 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D+GR++T+E+EQ Y+VNVY P +K DL+ L +L W L +L
Sbjct: 86 ----------------DEGRIITLEFEQCYVVNVYTPNSKRDLARLEERLQWEDDLLVYL 129
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K LN K V+L GDLNVAH ID+ P N G SGFTI+ER + L GFLD R+LY
Sbjct: 130 KKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASGFLDTFRYLY 189
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN YT+W Y ++ + GWR+DYF++S+++K+ + + IH V GSDH P +L LN
Sbjct: 190 PNQEGAYTWWSYMNKVRERNIGWRIDYFIVSERMKNVIQESAIHPHVMGSDHCPVMLELN 249
Query: 1033 L 1033
+
Sbjct: 250 V 250
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFMKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRTYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +RHLY
Sbjct: 132 KQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDTYRHLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K ++D +I+ ++ GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKGQITDAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW 200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW 200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 59/301 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-----LEKLP 790
K SWNVNG+RA QK + ++ + ++FCIQE + LE+L
Sbjct: 2 KFVSWNVNGLRA------------CLQKGFMDYFKKVNADIFCIQETKLQPHQTGLEELN 49
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EGY+AFW ++ Y+G AV +K KP+ V +G +
Sbjct: 50 --LEGYYAFWNFAEKKAYSGTAVFTKYKPLSVNYGIGI---------------------- 85
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
P H ++GRV+T+EYE+FYLVN Y P ++ L+ LS ++ W
Sbjct: 86 ---PQHD-------------NEGRVITLEYEKFYLVNTYTPNSQRGLTRLSYRMEWEEDF 129
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
R +L L+ +KP++L GDLNVAH ID+ P N +GFT +ER + L+ GF+D
Sbjct: 130 RNYLLKLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMTMLLNSGFIDTF 189
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+ YP+ + YT+W Y + K GWR+DYF++S++LK +L D EIH DV GSDH P +
Sbjct: 190 RYFYPHKKDAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVMGSDHCPVV 249
Query: 1029 L 1029
L
Sbjct: 250 L 250
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 158/308 (51%), Gaps = 57/308 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-- 790
+ KI SWNV+GIRAW + K G +++R+ D ++ C+QEI+C + LP
Sbjct: 59 YTLKISSWNVDGIRAWIK------------KQGLNWVREEDPHIMCLQEIKCAEKLLPPE 106
Query: 791 --ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+ PE H +W P ++GY+GVA+L K KP+ VT+G G EH
Sbjct: 107 IKDMPEYPHKYWACPDEKEGYSGVAMLCKDKPLNVTYGI---------------GIEEHD 151
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+ GRV+T E++ F+L+ Y P + L L + W+
Sbjct: 152 KE-----------------------GRVITAEFDSFFLIAAYVPNSSRGLVRLDYRQRWD 188
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
R +LK L+ KP++L GDLNVAH ID+ P TN GFT QER F L G+L
Sbjct: 189 VDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQGFGELLAEGYL 248
Query: 968 DVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D R LYP+ YT+W Y + +K GWRLDYF++SK L+ L D ++ + GSDH
Sbjct: 249 DSFRELYPDKPSAYTFWTYMMNARAKNVGWRLDYFVLSKALRPALCDSKVRSKIMGSDHC 308
Query: 1026 PQILYLNL 1033
P L + +
Sbjct: 309 PITLLMAI 316
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 53/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA +K + ++ + +VFCIQE + ++ E
Sbjct: 1 MKLISWNVNGIRA------------CVRKGFLDYFQEVNADVFCIQETKLQEGQIDLQLE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G AV +K KP+ V++G
Sbjct: 49 GYYQYWNYAVKKGYSGTAVFTKQKPLSVSYG----------------------------- 79
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D D+GR++T+E+EQ Y+VNVY P +K DL+ L +L W L +L
Sbjct: 80 ----------VDKESEDEGRIITLEFEQCYVVNVYTPNSKRDLARLEERLQWEDDLLVYL 129
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
LN K V+L GDLNVAH ID+ P N G SGFTI+ER + L GFLD R+LY
Sbjct: 130 NKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASGFLDTFRYLY 189
Query: 975 PNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN YT+W Y ++ + GWR+DYF++S+++K + + IH V GSDH P +L LN
Sbjct: 190 PNQEEAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEATIHPHVMGSDHCPVMLELN 249
Query: 1033 L 1033
+
Sbjct: 250 V 250
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K + ++ D ++FCIQE + ++ +G
Sbjct: 5 KLISWNVNGLRA------------CVKKGFLEYFKEIDADIFCIQESKLQEGQIDLELDG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G AV +K +P+ V G G EH
Sbjct: 53 YTSYWNYAEKKGYSGTAVFTKEEPLTVKRGI---------------GIEEHD-------- 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+EY FYLVNVY P +K+ L L +++W R +LK
Sbjct: 90 ---------------NEGRVLTLEYGNFYLVNVYTPNSKQGLERLDYRMVWEDVFRKYLK 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ P +N +GFT +ER+ S L+ GF+D +R+ YP
Sbjct: 135 ELEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKISELLEAGFIDTYRYFYP 194
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ + GWR+DYFL+S+ LK L D +IH +V GSDH P L +NL
Sbjct: 195 DKEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMEVTGSDHCPVELTINL 254
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 156/296 (52%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F + F + D ++FC+QE + ++ G
Sbjct: 2 KLVSWNVNGLRA--CVRKGFLNYF----------EEVDADIFCVQETKLQEGQIDLNLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K KP+ V +G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKDKPLDVKYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FYLVNVY P ++ +L+ L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEDFYLVNVYTPNSQRELTRLDYRMTWEDEFRNYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ IKPV+L GDLNVAH ID+ P TN +GFT +ER + L GF+D R+ YP
Sbjct: 132 ELDSIKPVILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTELLGTGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ YT+W Y + + GWR+DYF++S++ K L D +IH ++ GSDH P +L
Sbjct: 192 DKEDAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIHSEIMGSDHCPVML 247
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 157/299 (52%), Gaps = 52/299 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA V K F F D ++FC+QE + ++ E
Sbjct: 1 MKLISWNVNGIRA--CVKKGFLDYF----------TDIDADIFCLQETKLQEGQINLELE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K KP+ V +G G EH +
Sbjct: 49 GYEQYWNYAVKKGYSGTAIFTKQKPIEVKYGL---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FYLVNVY P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITLEFEDFYLVNVYTPNSQSELARLDYRMKWEDIFREYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+ IKPV+L GDLNVAH ID+ P TN +GFT +ERN + L+ GF D R+LY
Sbjct: 131 KDLDNIKPVILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKMTELLESGFTDSFRYLY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P Y++W Y + + GWR+DYF++S+++K + D +IH ++ GSDH P +L L
Sbjct: 191 PEKEGSYSWWSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIHSNIMGSDHCPVMLEL 249
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K+ +++ EI+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKNQITEAEINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+HL D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTHLKDALIYKDILGSDHCPVGLEL 249
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH +D+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y D +K GWRLDYF+IS++LK ++D +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMDARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC 29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F + D ++FCIQE + +L E
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLDFFHEADADIFCIQETKMQEGQLNLELER 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTAVFTKKEPLSVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FY V VY P ++ +L+ L ++ W R +LK
Sbjct: 89 -----------------GRVITCEFEDFYFVTVYTPNSQSELARLDYRMKWEDDFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 KLEKKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L+D +I +V GSDH P
Sbjct: 192 DQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLADAKILTEVMGSDHCP 244
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 164/297 (55%), Gaps = 52/297 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F ++ D ++FC+QE + ++ +
Sbjct: 1 MKLVSWNVNGLRA--CVKKGFLDYF----------QEVDADIFCVQETKLQEGQISLDLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV +K +P+ V +G G+D
Sbjct: 49 GYHQYWNYAIKKGYSGTAVFTKIEPISVRYGV--------------------GTDESE-- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
++GR++T+E++ F+LVN+Y P ++ DL+ + +L W S + HL
Sbjct: 87 ----------------EEGRILTLEFDDFFLVNIYTPNSQRDLARIGYRLEWESRILEHL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+++KPV+L GDLNVAH ID+ +N+G SGFT +ER ++ L GF+D +RH Y
Sbjct: 131 KELDKLKPVILCGDLNVAHQEIDLRNSKSNVGNSGFTDEERGKMTSLLSAGFVDSYRHFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ YT+W Y + + GWR+DYF++S++L+ +L +IH +V GSDH P +L
Sbjct: 191 PDQEGAYTWWSYMMKVRERNIGWRIDYFIVSEKLRENLKSADIHCNVMGSDHCPIVL 247
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 161/307 (52%), Gaps = 54/307 (17%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
D WN K+ SWNVNG+RAW + +G ++ + D ++F IQE +C +
Sbjct: 80 DGKEWNIKLVSWNVNGVRAWCK------------NEGHKYVSKEDPDIFTIQETKCQEGE 127
Query: 789 LPECP--EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+P+ +GYH++W +GYAG + SK +P+ VT+G G N+H
Sbjct: 128 VPDDVKFDGYHSYWSYAEEKGYAGTGLYSKVEPISVTYGI---------------GINKH 172
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GR +T EYE+FY ++ Y P A + L LS + W
Sbjct: 173 DKE-----------------------GRCITAEYEKFYFISTYIPNAGKGLKRLSYRQEW 209
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+ R ++K L+E KP++ GDLNVAH ID+ P TN +GF+ +ER F+ L++G
Sbjct: 210 DKDFREYMKKLDEKKPIIWCGDLNVAHQEIDLTNPKTNKKTAGFSKEEREGFTKHLEIGL 269
Query: 967 LDVHRHLYPNHRI-YTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D +RHL P +++W Y + K GWRLDYF++SK+L L D I V GSDH
Sbjct: 270 VDSYRHLNPEKTGEWSFWTYMMNARGKNIGWRLDYFVLSKRLLPCLCDSIIRSQVYGSDH 329
Query: 1025 APQILYL 1031
AP +L++
Sbjct: 330 APIVLFM 336
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA +K F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGIRA------------CVEKGFLDFFKSVDADIFCLQETKLQQGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K KP+ ++G +++ EH
Sbjct: 50 YEQYWNYAEKKGYSGTAVFTKEKPLSASYGLNIE---------------EHDK------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ FYLV VY P +KE+L+ L ++ W R +LK
Sbjct: 88 ----------------EGRVITLEYDDFYLVTVYTPNSKEELARLEYRMEWEDAFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ P TN GF+ +ER FS L GF+D +R+ YP
Sbjct: 132 KLEKNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEERAKFSELLASGFIDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ +K GWR+DYF+IS++LK L EIH ++ GSDH P
Sbjct: 192 DKEGAYSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHNEILGSDHCP 244
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+HL D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTHLKDALIYKDILGSDHCPVGLEL 249
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 194 bits (492), Expect = 3e-46, Method: Composition-based stats.
Identities = 108/307 (35%), Positives = 158/307 (51%), Gaps = 62/307 (20%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
KI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 1 LKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEEVT 48
Query: 792 -CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 49 RIP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEEFD 88
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 89 DV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRWEK 126
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
+ ++K L+ +KPVV+ GD+NV+H ID+ P N +GFT +ER+ + L LGF+D
Sbjct: 127 LFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVD 186
Query: 969 VHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYP+ + YT+W Y + ++ GWRLDY L+S++ + + EI GSDH P
Sbjct: 187 TFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDHCP 246
Query: 1027 QILYLNL 1033
++ N+
Sbjct: 247 ITIFFNI 253
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 152/305 (49%), Gaps = 57/305 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
N KI SWNV+G+RAW + K G ++R+ D ++ C+QE +C + LP
Sbjct: 54 NMKITSWNVDGLRAWVK------------KKGLDWVREEDPDILCLQETKCAEKALPAEI 101
Query: 792 --CPEGYHAFWFP-GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
PE H +W G ++GY+GVA+L KT+P++VT+G G EH
Sbjct: 102 TSMPEYPHKYWAASGDKEGYSGVAMLCKTEPIKVTYGI---------------GKEEHDK 146
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
+ GRV+T E+ FYLV Y P A L L + W+
Sbjct: 147 E-----------------------GRVITAEFPSFYLVTAYVPNASRGLVRLDYRKTWDV 183
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
R +L L+ KP+VL GDLNVAH ID+ P N +GFT +ER FS L GF+D
Sbjct: 184 DFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTPEEREGFSQLLAAGFVD 243
Query: 969 VHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R LYP YT+W Y + SK GWRLDYF++S L L D +I GSDH P
Sbjct: 244 SFRELYPEQTNAYTFWTYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNKAMGSDHCP 303
Query: 1027 QILYL 1031
L++
Sbjct: 304 ITLHI 308
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 159/300 (53%), Gaps = 52/300 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA QK + + ++FC+QE + ++ E
Sbjct: 1 MKLISWNVNGLRA------------CVQKGFLDYFHEMGADIFCVQETKLQEGQIDLNLE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G AV +K KP+ V++G EH D E
Sbjct: 49 NYNQYWNYAAKKGYSGTAVFTKIKPISVSYGLG-----------------EHMEDHE--- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR +T+E+ FYLVNVY P ++ DL+ LS +L W +R +L
Sbjct: 89 ------------------GRAITLEFPSFYLVNVYTPNSQRDLARLSYRLEWEDNIRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+++KPV+L GDLNVAH ID+ TN G SGFT +ER + LD GF+D R+LY
Sbjct: 131 LELDKVKPVILCGDLNVAHQEIDLKNYKTNRGNSGFTDEEREKMTRLLDSGFVDSFRYLY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ + GWR+DYF++SK L S + D +IH ++ GSDH P L LN
Sbjct: 191 PDKGDVYSWWSYMNKVRERNIGWRIDYFILSKGLSSSIIDSQIHTEIMGSDHCPVCLELN 250
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 157/301 (52%), Gaps = 53/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA +K + ++ +VFCIQE + ++ E
Sbjct: 1 MKLISWNVNGIRA------------CVRKGFLDYFQEVTADVFCIQETKLQEGQIDLQLE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G AV +K KP+ V+ G
Sbjct: 49 GYYQYWNYAVKKGYSGTAVFTKQKPLSVSFG----------------------------- 79
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D D+GR++T+E+EQ Y+VNVY P +K DL+ L +L W L +L
Sbjct: 80 ----------VDKELEDEGRIITLEFEQCYVVNVYTPNSKRDLARLEERLQWEDDLLVYL 129
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K LN K V+L GDLNVAH ID+ P N G SGFTI+ER + L GFLD R+LY
Sbjct: 130 KKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASGFLDTFRYLY 189
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN YT+W Y ++ + GWR+DYF++S+++K + + IH V GSDH P +L LN
Sbjct: 190 PNQEGAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEAAIHPHVMGSDHCPVMLELN 249
Query: 1033 L 1033
+
Sbjct: 250 V 250
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 193 bits (491), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA +Q K F IF + D ++FCIQE + +L G
Sbjct: 2 KFISWNVNGIRACAQ--KGFMDIF----------NEADADIFCIQESKMQAGQLELDTPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKEEPLSVSYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY + VY P ++ +L+ L ++ W +LK
Sbjct: 89 -----------------GRVITLEFEDFYFITVYTPNSQSELARLDYRMRWEDAFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+N L+ GF+D R+ YP
Sbjct: 132 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTNLLNAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF +S+ LK + D +I ++ GSDH P
Sbjct: 192 DAEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKILTEIMGSDHCP 244
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 154/296 (52%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F ++ D ++FCIQE + +L G
Sbjct: 2 KFVSWNVNGIRA------------CVQKGFMEFFQEADADIFCIQESKMQEGQLELETPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAKKKGYSGTAIFTKQEPISVSYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E +Y + VY P ++ +L+ L ++ W +LK
Sbjct: 89 -----------------GRVITLEFEDYYFITVYTPNSQNELARLPYRMQWEDDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F++ +D GF+D R+ YP
Sbjct: 132 KLEEAKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTSLVDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ + IY++W Y + +K GWR+DYF +S+ L+ L D +I DV GSDH P +L
Sbjct: 192 DAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKILTDVMGSDHCPIVL 247
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 250
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 157/293 (53%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F Q++ ++FC+QE + E++P EG
Sbjct: 2 KLISWNVNGLRA--CLNKGFMDFFEQEQ----------ADIFCLQETKLQEEQIPFQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+A+W ++GY+G AV +K +P+ V++G G EH +
Sbjct: 50 YYAYWNFAQKKGYSGTAVFTKNEPLSVSYGI---------------GKEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FYLV VYAP ++ L+ L ++ W +LK
Sbjct: 89 -----------------GRVITLEFETFYLVTVYAPNSQRGLARLDYRMTWEEEFLSYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL + KPV+ GDLNVAH ID+ P +N +GF+ +ER FS L GF+D RH YP
Sbjct: 132 SLEKSKPVIFCGDLNVAHTEIDLKNPKSNRKNAGFSDEERAKFSGLLKNGFIDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y ++ + GWR+DYF +S+ LK+ L D I+ + GSDH P
Sbjct: 192 DKTDSYTWWSYMFNARTNNAGWRIDYFCVSESLKNELKDALIYDKIMGSDHCP 244
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 157/299 (52%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA VNK F F D ++FC+QE + +L EG
Sbjct: 41 KFISWNVNGIRA--CVNKGFLDYF----------HAADADIFCLQETKLQEGQLALDLEG 88
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K +P+ V++G ++ +
Sbjct: 89 YFQYWNYAEKKGYSGTAVFTKEEPLSVSYGLGIE-------------------------A 123
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EYE FY V VY P ++ +L L ++ W R +L
Sbjct: 124 HDQ-------------EGRVITLEYETFYFVTVYTPNSQSELKRLDYRMEWEDDFRAYLT 170
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ER F+ LD G++D R+ YP
Sbjct: 171 GLDREKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEERQKFTELLDSGWIDTWRYFYP 230
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ +Y++W Y + K GWR+DYFL+S +LK L+D +IH +V GSDH P L LN
Sbjct: 231 DQEGVYSWWSYRFKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEVMGSDHCPVELDLN 289
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKQEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+TVE+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITVEFEGFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+HL D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTHLKDALIYKDILGSDHCPVGLEL 249
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 193 bits (490), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 158/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK KP+ V +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQKPLHVMYGI---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P +K L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENLFVMTVYTPNSKRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSEQERGAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWRLDYF++S++LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKEQIEDASISADVMGSDHCPVELMIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 154/301 (51%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNGIRA K GF + ++ + ++FCIQE +C ++
Sbjct: 2 KFISWNVNGIRA-------------CLKKGFEEYFQEANADIFCIQETKCQEGQVELTLP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W R+GY+G A+ +K +P+ V++G G EH
Sbjct: 49 GYHQYWNSAVRKGYSGTAIFAKREPLSVSYGI---------------GIEEHDQ------ 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+EYE FY V VY P ++ +L+ LS ++ W +L
Sbjct: 88 -----------------EGRVITLEYEDFYFVTVYTPNSQNELARLSYRMDWERDFLEYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L E KPVV GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ Y
Sbjct: 131 TKLEERKPVVWCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTKVLESGFIDTFRYFY 190
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ IY++W Y R K GWR+DYFL+S L+ + D +IH V GSDH P L +
Sbjct: 191 PDQEGIYSWWSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVLGSDHCPVELDIT 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 154/292 (52%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F +Q D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVKKNFQESF----------QQLDADFFCLQETKMQEGQLDLQFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V++G G EH +
Sbjct: 50 YTSYWNYAEKKGYSGTAIYTKHKPIHVSYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E F+L+ VY P ++++L L ++ W R ++
Sbjct: 89 -----------------GRVITLEMEDFFLITVYVPNSQDELKRLDYRMKWEDDFRAYIT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++IKPV++ GDLNVAH ID+ P TN +GFT +ERN + LD GF+D R+LYP
Sbjct: 132 QLDQIKPVIICGDLNVAHEEIDLKNPKTNKRNAGFTDEERNKMTRLLDNGFIDTFRYLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++LK L D +IH ++ GSDH P
Sbjct: 192 EQITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTEIMGSDHCP 243
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 157/293 (53%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA T FL + ++ D +VFC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------CITKGFLD------YFKEVDADVFCLQETKIQEGQVELELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ FW ++GY+G A+ +K KP+ ++G NE D E
Sbjct: 50 YYDFWNYAEKKGYSGTAIFTKKKPISYSYGI-----------------NEEKHDKE---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P +KE L+ L ++ W R +LK
Sbjct: 89 -----------------GRVITLEFEDFYMVTVYTPNSKEKLARLEYRMEWEDSFRNYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+E KPV++ GD+NVAH ID+ P TN +GF+ +ER+ F+ L+ GF+D +R+ YP
Sbjct: 132 ALDEKKPVIVCGDMNVAHTEIDLKNPKTNTKNAGFSPEERSKFTELLEAGFIDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF S++LK L +IH +V GSDH P
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDYFCTSERLKDKLVSADIHTEVMGSDHCP 244
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 192 bits (489), Expect = 7e-46, Method: Composition-based stats.
Identities = 108/293 (36%), Positives = 153/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F ++ D ++FCIQE + +L EG
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLEFFQEADADIFCIQESKMQAGQLDLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P+ V +G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKKEPLSVQYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY V VY P ++ +L+ LS ++ W + +LK
Sbjct: 89 -----------------GRVITLEFEEFYFVTVYTPNSQSELARLSYRIQWETDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ AGDLNVA+ ID+ P TN +GFT +ER F L GF+D R+ YP
Sbjct: 132 GLEQKKPVIFAGDLNVAYAEIDLKNPKTNRKNAGFTDEERAKFGEVLKAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + +K GWR+DYF +S+ LK L+D +I DV GSDH P
Sbjct: 192 EMEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLADAKILTDVMGSDHCP 244
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 192 bits (489), Expect = 7e-46, Method: Composition-based stats.
Identities = 108/293 (36%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F ++ D ++FCIQE + +L EG
Sbjct: 2 KFISWNVNGIRA------------CVQKGFLDFFKEADADIFCIQESKMQEGQLKLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW R+GY+G A+ +K +P+ V +G M+ EH +
Sbjct: 50 YHQFWNYAERKGYSGTAIFTKQEPLSVAYGIGME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY V VY P ++ +L+ L ++ W + +LK
Sbjct: 89 -----------------GRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L GF+D R+ YP
Sbjct: 132 KLEAKKPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGKFTELLSAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + +K GWR+DYF +S+ LK L D +I DV GSDH P
Sbjct: 192 EQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKILTDVMGSDHCP 244
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 192 bits (489), Expect = 7e-46, Method: Composition-based stats.
Identities = 108/293 (36%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA QK F ++ D ++FCIQE + +L EG
Sbjct: 2 KFISWNVNGIRA------------CVQKGFLDFFKEADADIFCIQESKMQEGQLKLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW R+GY+G A+ +K +P+ V +G M+ EH +
Sbjct: 50 YHQFWNYAERKGYSGTAIFTKQEPLSVAYGIGME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY V VY P ++ +L+ L ++ W + +LK
Sbjct: 89 -----------------GRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L GF+D R+ YP
Sbjct: 132 KLEAKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFTELLSAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + +K GWR+DYF +S+ LK L D +I DV GSDH P
Sbjct: 192 EQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKILTDVMGSDHCP 244
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 192 bits (489), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 156/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA K F Q + + FCIQE +C ++ +G
Sbjct: 2 KFISWNVNGIRA------------CLGKGFLDFFHQIEADFFCIQETKCQAGQVELALDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K P+ V +G VG
Sbjct: 50 YEQYWNYAQKKGYSGTAIFTKHTPLSVKYG----VG------------------------ 81
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D D+GR++T+EYE FYLVNVY P A+ DL+ L ++L W L +L+
Sbjct: 82 ----------DEDSQDEGRIITLEYEDFYLVNVYTPNAQRDLARLPLRLTWEEHLASYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN KPVV GDLNVAH ID+ +N+G SGFT +ER FS L GF+D R+ +P
Sbjct: 132 DLNSKKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGFVDSFRYKHP 191
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N +T+W Y ++ + GWR+DYF++S+QLK+ ++ IH + GSDH P L L++
Sbjct: 192 NETDHFTWWSYMNKVRERNIGWRIDYFIVSEQLKNQINQATIHPHIMGSDHCPIELQLHV 251
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA QK F+ Q ++FC+QE + E+ C EG
Sbjct: 53 RLVSWNVNGLRA------------CMQKGFCDFLEQSQADIFCVQETKMQQEQASFCFEG 100
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV LSK P++V++G G EH ++
Sbjct: 101 YEVFWNSAQKKGYSGVLTLSKIAPLQVSYGI---------------GIAEHDTE------ 139
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EY FYLVNVY P A+ L L +L W RG L+
Sbjct: 140 -----------------GRVITCEYPNFYLVNVYTPNAQRGLLRLPYRLEWERSFRGFLQ 182
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + K VV+ GDLNVAHN ID+ P +N +GF+ ER+ F L+LG +D RH YP
Sbjct: 183 NLMQKKAVVVCGDLNVAHNEIDLTNPQSNRYNAGFSDPERDAFRQLLNLGLIDTFRHFYP 242
Query: 976 NH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W Y ++ +K GWR+DYFL S+ L S L I+ + GSDH P
Sbjct: 243 TKAESYTWWSYINQARAKNIGWRIDYFLTSQTLNSCLQSAYIYNHILGSDHCP 295
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 192 bits (488), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS +S ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRISYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKERAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM 12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM 12112]
Length = 251
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 154/296 (52%), Gaps = 52/296 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F F +QK N+ +QEI+ +L EGY+
Sbjct: 6 SWNVNGLRA--CIKKGFLDYFNEQKP----------NIIGLQEIKMSEGQLDLELEGYYT 53
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
++ ++GY+G A+ + +P+ V++G G EH +
Sbjct: 54 YYNYAEKKGYSGTAIFTDVEPISVSYGI---------------GIEEHDKE--------- 89
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T E+E +Y V VY P +K +L L +++W R +LK L
Sbjct: 90 --------------GRVITAEFEDYYFVTVYTPNSKNELERLDYRMIWEDEFRSYLKKLE 135
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH- 977
E KPV++ GDLNVAH ID+ P +N +GFTI+ERN F+ ++ GF+D R+ YP+
Sbjct: 136 EKKPVIVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFTELIENGFIDTFRYFYPDKI 195
Query: 978 RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
Y++W Y K GWR+DYF +S LK L D EIH VEGSDH P +LY+N
Sbjct: 196 HAYSWWSYRGNARKNNTGWRIDYFCVSSSLKDRLVDAEIHDKVEGSDHCPVVLYIN 251
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 5 KLISWNVNGLRA--CVKKGFLDYF----------NEMDADIFCVQETKLQEGQIDLELEG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K KP+ V G G EH
Sbjct: 53 YYDYWNYAEKKGYSGTAVFTKEKPISVKMGL---------------GIEEHD-------- 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+EY++F+LVNVY P +++ L+ L ++ W R +LK
Sbjct: 90 ---------------NEGRVITLEYDKFFLVNVYTPNSQQKLARLEYRMSWEDVFRNYLK 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH ID+ P +N +GF+ +ER+ S L+ GF D R+ YP
Sbjct: 135 DLEKNKPVILCGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSELLNSGFTDTFRYFYP 194
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ + GWR+DYF++S+ L L D +IH +EGSDH P L +NL
Sbjct: 195 DIEGVYSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIHTSIEGSDHCPVELEINL 254
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH +D+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+IS++LK ++D +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 192 bits (488), Expect = 9e-46, Method: Composition-based stats.
Identities = 103/300 (34%), Positives = 158/300 (52%), Gaps = 51/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PEG
Sbjct: 2 KLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV SK +P RV +G G EH +
Sbjct: 51 YHMYWNYAVKKGYSGTAVFSKQEPQRVMYGI---------------GIEEHDQE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E +++ VY P AK L + ++ W L ++
Sbjct: 90 -----------------GRVITLEFENMFVMTVYTPNAKRGLERIDYRMQWEEDLLSYIL 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+YP
Sbjct: 133 ELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRFLEAGFIDSFRHVYP 192
Query: 976 N-HRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + GWR+DYF++S++LK + D I DV GSDH P L +N+
Sbjct: 193 DLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKDQIEDASISADVMGSDHCPVELMINI 252
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQDGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+A+W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYAYWNYAVKKGYSGTAIFSKKEPLAVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L++ KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KQLDKKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNVDIFCLQEIKLQDGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KQLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D ++FC+QE + ++ PEG
Sbjct: 2 KFISWNVNGLRA--CVTKGFMD----------FFNEVDADIFCLQETKLQEGQIDLNPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V +G +G H H
Sbjct: 50 YESYWNYADKKGYSGTAIFTKKKPLSVAYG----IGIDEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+E FY V VY P ++ +L L ++ W R +LK
Sbjct: 88 ----------------EGRVITLEFEDFYFVTVYTPNSQTELKRLEYRMRWEDDFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPVV+ GDLNVAH ID+ P TN +GFT +ERN F+ FL+ GF+D R+ YP
Sbjct: 132 NLDSKKPVVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKFTEFLESGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYF S+ +K L +IH +V GSDH P
Sbjct: 192 DAEGMYSWWSYRFNARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVLGSDHCP 244
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 192 bits (487), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + +K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARNKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 53/302 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECP 793
K SWNVNG+RA + K GF ++ + D ++FC+QEI+ ++ P
Sbjct: 1 MKFISWNVNGLRA------------VIAKGGFIEYLEETDTDIFCLQEIKLQSGQVDLNP 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGY+ +W ++GY+G A+L+K +P+ VT+G G EH
Sbjct: 49 EGYYVYWNYAVKKGYSGTAILTKKEPLSVTYGL---------------GIEEHDQ----- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GR++T+E+E FY++ +Y P AK L L ++ W + +
Sbjct: 89 ------------------EGRLITLEFEDFYMLTLYTPNAKRGLERLDYRMKWEEDILSY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ L++ KPV+ GDLNVAH ID+ P TN GF+ QER F+ LD GF+D +R+L
Sbjct: 131 ITKLDKKKPVIFCGDLNVAHKEIDLKNPKTNRKNPGFSDQERKRFTQILDEGFIDTYRYL 190
Query: 974 YPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y++W Y + +K GWRLDYF++S++LK + D +I+ +V GSDH P L +
Sbjct: 191 YPDREGAYSWWSYRMNARAKNIGWRLDYFIVSERLKDKIVDAKINSEVMGSDHCPVELNM 250
Query: 1032 NL 1033
L
Sbjct: 251 EL 252
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNNVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VITKGGFLEYLEESNADIFCLQEIKLQSGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +RHLY
Sbjct: 132 KQLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDTYRHLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S ++K ++D +I+ ++ GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSDRIKGQITDAKINSEIIGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK + ++ D ++FCIQE + ++ EG
Sbjct: 4 KMISWNVNGLRA------------CVQKGFLEYFKEADADIFCIQESKLQEGQIELPLEG 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV SK +P+ V++G G EH +
Sbjct: 52 YHQYWNYAKKKGYSGTAVFSKEEPLSVSYGI---------------GIEEHDQE------ 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ +YLV VY P ++ +L+ L ++ W +LK
Sbjct: 91 -----------------GRVITLEFDTYYLVTVYTPNSQNELARLPYRMTWEEAFLAYLK 133
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAH ID+ P TN +GFT +ER FS L+ GF+D +R+ YP
Sbjct: 134 GLEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFSQILENGFIDTYRYFYP 193
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y R K GWR+DYF +S+ LK L D IH ++ GSDH P
Sbjct: 194 EQEGVYSWWSYRFRAREKNAGWRIDYFCVSECLKDRLVDARIHTEITGSDHCP 246
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH +D+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+IS++LK ++D +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLNVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 191 bits (486), Expect = 1e-45, Method: Composition-based stats.
Identities = 113/310 (36%), Positives = 158/310 (50%), Gaps = 57/310 (18%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
D + KI SWNV+GIRAW + K G +++R+ D ++ C+QEI+C +
Sbjct: 55 DGKKYTLKISSWNVDGIRAWIK------------KQGLNWVREEDPHIMCLQEIKCAEKL 102
Query: 789 LP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGS 843
LP + PE H +W P ++GY+GVA+L K KP+ VT+G G
Sbjct: 103 LPPDVKDMPEYPHKYWACPDEKEGYSGVAMLCKDKPLNVTYGI---------------GI 147
Query: 844 NEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK 903
EH + GRV+T E++ F+++ Y P + L L +
Sbjct: 148 EEHDKE-----------------------GRVITAEFDSFFVIAAYIPNSSRGLVRLDYR 184
Query: 904 LLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD 963
W+ R +LK L+ KP++L GDLNVAH ID+ P TN GFT QER F L
Sbjct: 185 QRWDVDFRAYLKGLDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQGFGELLA 244
Query: 964 LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
G+LD R LYP+ YT+W Y + +K GWRLDYF++SK L+ L D +I V G
Sbjct: 245 EGYLDSFRELYPDKPSAYTFWTYMMNARAKNVGWRLDYFVLSKALRPALCDCKIRSKVMG 304
Query: 1022 SDHAPQILYL 1031
SDH P L +
Sbjct: 305 SDHCPITLLM 314
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 154/299 (51%), Gaps = 49/299 (16%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F D ++FCIQE + ++ G
Sbjct: 2 KLVSWNVNGIRA--CVKKGFMDYF----------NDMDADIFCIQETKLQEGQIDLDTPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K KP++V +G K ++
Sbjct: 50 YYQYWNYAIKKGYSGTAVFTKMKPLQVRYGLDEK---------------------KAEEC 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE GR++T+EYE F+LVNVY P ++ DL+ L +L W ++K
Sbjct: 89 EPE--------------GRILTLEYEDFFLVNVYTPNSQRDLARLPFRLDWEDRFLAYIK 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ K V++ GDLNVAH ID+ P +N SGFT +ER + L GF D RH YP
Sbjct: 135 MLDQQKSVIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEERGKMTRLLGEGFSDTFRHFYP 194
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y ++ + GWR+DYF++S LK L D EIH D+ GSDH P +L LN
Sbjct: 195 ELTDKYTWWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIHSDIMGSDHCPVVLILN 253
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 153/307 (49%), Gaps = 60/307 (19%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N KI SWNV G+R+W + K F+ ++ C+QE +C ++LPE
Sbjct: 87 NVKISSWNVAGLRSWVE------------KGCLEFLEHEAPDILCLQETKCTEDQLPEEA 134
Query: 794 ---EGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
+GYH +W PG GYAGVA+ SK P V++G
Sbjct: 135 RHIKGYHPYWLCKPG---GYAGVAIYSKKMPFNVSYGL---------------------- 169
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
DA +DGR++T EYE+FYLV VY P A L L ++ W+
Sbjct: 170 ----------------GDAEQDEDGRLLTAEYEKFYLVCVYVPNAGRKLVTLPKRMRWDE 213
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
+L+ L+ KPV+L GD+NVAH ID+A P TN +GFT +ER+ +N L GF+D
Sbjct: 214 KFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPKTNKKNAGFTQEERDGMTNLLSHGFVD 273
Query: 969 VHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R YP + YT+W Y +K GWRLDYF+ S++L + D I V GSDH P
Sbjct: 274 TFRQRYPEQKAAYTFWTYMGNARAKNVGWRLDYFIASERLAGRVVDSVIRPGVYGSDHCP 333
Query: 1027 QILYLNL 1033
L LNL
Sbjct: 334 ITLLLNL 340
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMGWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ LD GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLDAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNVGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC 27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA K F ++ D ++FCIQE + +L G
Sbjct: 2 KFISWNVNGIRA------------CAGKGFMDFFQETDADIFCIQETKMQEGQLELDTPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH
Sbjct: 50 YHQYWNYAKKKGYSGTAIFTKQEPISVSYGL---------------GIEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+E FY + VY P ++ +L+ L ++ W +LK
Sbjct: 88 ----------------EGRVITLEFEDFYFITVYTPNSQSELARLDYRMKWEEDFLTYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 KLEETKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERQKFTELLNAGFVDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + +K GWR+DYF +S+ LK L D +I D+ GSDH P
Sbjct: 192 EQTGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLEDAKILTDIMGSDHCP 244
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK + + + ++FCIQE + ++ EG
Sbjct: 2 KLISWNVNGLRA------------AVQKGFLDYFKNENADIFCIQETKLQEGQIELDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K KP+ V++G G EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKKPIEVSYGL---------------GIEEHDK------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EYE FY++ VY P ++E+L+ L ++ W R ++
Sbjct: 88 ----------------EGRVITLEYEDFYMITVYTPNSQEELARLDYRMSWEDEFRNYVM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+++KPV++ GDLNVAH ID+ P +N +GF+ +ER F+ L+ GF+D RH YP
Sbjct: 132 KLDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAGFSDEERAKFTELLENGFIDSFRHFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y ++ GWR+DYF++S++LK + EIH ++ GSDH P +L L
Sbjct: 192 EVTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEILGSDHCPVVLKL 249
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSDPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVITFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLQVIYGI---------------GLEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVITVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S++LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 157/293 (53%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F I +++ + ++FC+QE + ++ EG
Sbjct: 3 KLISWNVNGLRA--CVKKGFIDI----------LKESNADIFCVQESKLQEGQIDLNLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV SK KP+ ++ G G EH +
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKEKPLNISLGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FYLVNVY P +++ L+ + ++ W + R +L
Sbjct: 90 -----------------GRVLTLEFEEFYLVNVYTPNSQQKLARIDYRMAWENDFRSYLN 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV++ GDLNVAH ID+ P N +GF+ +ER F L GF+D +R+ YP
Sbjct: 133 ELNKAKPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGELLKSGFIDTYRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ + GWR+DYFL+SK + L D +IH +EGSDH P
Sbjct: 193 DKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDAKIHTQIEGSDHCP 245
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 51/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K+ SWNVNG+RA QK F + D ++F +QE + P + E P
Sbjct: 2 KLISWNVNGLRA------------CIQKGFMDFFNEQDADIFALQETKLQPHQIELELP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W R+GY+G AV +K KP+ V + F E+
Sbjct: 49 GYHQYWHSAERKGYSGTAVFTKQKPLSVRYDFD-----------------------EAEG 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
HP+ +GRV+T+E+EQFY V Y P +KE+L+ L ++ W + HL
Sbjct: 86 EHPK-------------EGRVITLEFEQFYFVTAYVPNSKEELARLDYRMQWEDAMARHL 132
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
LNE KPVV GDLNVA ID+ P TN GF+ QER + L LGF D R LY
Sbjct: 133 AKLNETKPVVYTGDLNVAVEEIDLKNPKTNHFNPGFSDQERQKMRDLLSLGFADTFRTLY 192
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P Y++W Y ++ +K GWR+DYF++S++L + + D I+GD+ GSDH P
Sbjct: 193 PEKVEYSWWSYRFNSRAKNVGWRIDYFIVSQRLMNQVKDSVIYGDILGSDHCP 245
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 155/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F + F ++ D ++FC+QE + ++ EG
Sbjct: 3 KLVSWNVNGLRA--CIGKGF----------WDFFKEVDADIFCVQETKLQEGQIELELEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K KPV + G G EH
Sbjct: 51 YEHYWNYAVKKGYSGTAIFTKIKPVSSSCGI---------------GIEEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+E+E+++LVNVY P +K +L L ++ W R +LK
Sbjct: 88 ---------------NEGRVITLEFEEYFLVNVYTPNSKRELERLEYRMKWEDDFRVYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GD+NVAH ID+ P +N +GFT++ER FS L+ GF+D R LYP
Sbjct: 133 QLEQTKPVIICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSELLEQGFVDTFRTLYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + K GWR+DYF IS+ LK + EI+ D+ GSDH P
Sbjct: 193 DKTGAYTWWSYMFKAREKNVGWRIDYFCISEALKDRIEAAEIYCDIMGSDHCP 245
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 191 bits (485), Expect = 2e-45, Method: Composition-based stats.
Identities = 106/301 (35%), Positives = 157/301 (52%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA K GF +F + D ++FC+QE + ++ +
Sbjct: 2 KFVSWNVNGLRACV-------------KKGFLAFFAETDADIFCVQETKLQAGQIALDLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G AV +K +P+ V +G G D
Sbjct: 49 GYYQYWNYAERKGYSGTAVFTKKEPLSVRYGV--------------------GEDR---- 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ PE GR++T+EYE FYLVNVY P ++ DL+ L +L W +R +L
Sbjct: 85 TEPE--------------GRILTLEYEDFYLVNVYTPNSQRDLARLGYRLEWEDRMRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV++ GD+NVAH ID+ N+G SGFT +ER + L+ GF+D R+ Y
Sbjct: 131 TELDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNSGFIDSFRYFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P YT+W Y ++ + GWR+DYFL+SK+L L D ++ ++ GSDH P L N
Sbjct: 191 PEREGAYTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKDAGMYPEIMGSDHCPVFLETN 250
Query: 1033 L 1033
Sbjct: 251 F 251
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHNKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 252
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLQVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S++LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V +G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVNYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTCLKDALIYKDILGSDHCPVGLEL 249
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNIFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRIITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 159/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F + + ++FCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFF----------NEVNADIFCIQESKMQKDQGDFSFQG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GV VLSK KP++VT+ DM G S
Sbjct: 50 YSEYWNSAEKKGYSGVVVLSKIKPLQVTY------------------------DM--GIS 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T EYE+FYLVNVY P AK +L L ++ W R +K
Sbjct: 84 HHD------------KEGRIITAEYERFYLVNVYTPNAKRELERLEYRMEWEDDFRAFVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPVV+ GDLNVAH ID+ P TN +GFT +ER S L+ GF+D RH YP
Sbjct: 132 KLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSELLESGFIDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + + GWR+DYFL S L+SHL D +I+ + GSDH P L +++
Sbjct: 192 TLEGAYSWWSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPHIFGSDHCPVGLSMDM 251
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNTDIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ ++ +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTRKEPIAVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+N L+ GF+D +R LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTNILEEGFVDTYRFLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+ S++LK ++D +I+ +V GSDH P L+++
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITDAKINSEVMGSDHCPVELHID 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F ++ D ++FCIQE + +L G
Sbjct: 13 KMISWNVNGIRA--CVGKNF----------MDFFKEADADIFCIQESKMQEGQLQLELPG 60
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+ V +G +G H H
Sbjct: 61 YYQYWNYAEKKGYSGTAIFAKKEPLSVAYG----IGIEEHDH------------------ 98
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ FY+V VY P ++ +L+ L ++ W R +LK
Sbjct: 99 ----------------EGRVITLEYDNFYMVTVYTPNSQNELARLDYRMKWEDDFREYLK 142
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPVV+ GD+NVAH ID+ P TN +GFT +ER FS LD GF+D R P
Sbjct: 143 QLEQTKPVVVCGDMNVAHTEIDLKNPKTNRKNAGFTDEEREKFSTLLDSGFVDTFRFFNP 202
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y + K GWR+DYFL SK L+S L D +IH +V GSDH P L ++L
Sbjct: 203 DAEGIYSWWSYRFKAREKNAGWRIDYFLTSKVLESRLVDAKIHTEVLGSDHCPVELDIDL 262
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ ++ +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTRKEPIAVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+N L+ GF+D +R LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTNILEEGFVDTYRFLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+ S++LK ++D +I+ +V GSDH P L+++
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITDAKINSEVMGSDHCPVELHID 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 191 bits (484), Expect = 3e-45, Method: Composition-based stats.
Identities = 119/330 (36%), Positives = 162/330 (49%), Gaps = 61/330 (18%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E PI+ + DP L K D N KI SWNV+G+RAW + K+G +
Sbjct: 5 EAPIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDW 48
Query: 769 MRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVT 823
+R+ D ++ C+QE +C + LP PE H +W ++GY+GVA+L KT+P+ VT
Sbjct: 49 VRKEDPDILCLQETKCAEKALPADITAMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVT 108
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G EH + GRV+T E+ F
Sbjct: 109 YGI---------------GKEEHDKE-----------------------GRVITAEFPDF 130
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
+LV Y P A L L + W+ R +L L+ KP+VL GDLNVAH ID+ P
Sbjct: 131 FLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKG 190
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFL 1001
N +GFT +ER F+ L+ GF D R LYP+ YT+W Y + SK GWRLDYF+
Sbjct: 191 NRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFV 250
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+S L L D +I GSDH P L+L
Sbjct: 251 LSSALLPGLCDSKIRNTAMGSDHCPITLFL 280
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSIDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 157/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F + D ++FCIQE + ++ EG
Sbjct: 2 KLVSWNVNGIRA--CVKKGFLDYF----------NEVDADIFCIQESKLQEGQIELDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K KP+ V +G VG
Sbjct: 50 YEQYWNYAVKKGYSGTAVFTKEKPISVKYG----VGEEEDEE------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E++QFYLVNVY P +K L L +++W R HLK
Sbjct: 88 ----------------EGRVLTLEFDQFYLVNVYTPNSKRGLERLDGRMIWEDEFRAHLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ IKPV+L GDLNVAH ID+ P +N +GFT +ER + L GF+D R+ YP
Sbjct: 132 ELDAIKPVILCGDLNVAHEEIDLKNPKSNKKSAGFTNEEREKMTELLTSGFIDSFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + + GWR+DYF++S++LK+ L + IH + GSDH P +L L++
Sbjct: 192 DLEGAYSWWSYMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQIMGSDHCPVVLELDI 251
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 156/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFFTSV----------NADVFCIQESKMQQEQNTFDFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV SKT+P+ V++G G EH ++
Sbjct: 50 YFDFWNCAIKKGYSGVVTFSKTEPLNVSYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+++FYLVNVY P ++ L+ L ++ W R LK
Sbjct: 89 -----------------GRVVTCEFDKFYLVNVYTPNSQRALARLEYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P N +GF+ +ER FS L+ GF+D RH YP
Sbjct: 132 NLELQKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKFSELLNAGFIDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ YT+W Y + K GWR+DYFL SK LK+ L D +I+ ++ GSDH P L L
Sbjct: 192 TKEKAYTWWSYMQQARDKNIGWRIDYFLCSKSLKTELKDAKIYENILGSDHCPVGLEL 249
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLQVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTLALEGGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K + D +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYLMGARAKNIGWRLDYFVVSERIKGQIIDAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K LNE K VV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREQFTRTLEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +K F +F + + F FC+QE + +L EG
Sbjct: 3 KFISWNVNGLRA--CYDKGFVDVFHRLEADF----------FCLQETKMQEGQLDAKFEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH++W ++GY+G A+ SK KP+ VT+G ++ H H
Sbjct: 51 YHSYWNYAEKKGYSGTAIFSKVKPLSVTYGLGIEE----HDH------------------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E E FYL+ VY P ++E+L L ++ W R +LK
Sbjct: 89 ----------------EGRVITLELESFYLITVYTPNSQEELRRLDYRMKWEDDFRAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF D R+ YP
Sbjct: 133 KLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKFTTLLESGFTDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
IY++W Y + K GWR+DYFL S LK L I+ D+ GSDH P L + L
Sbjct: 193 EQEGIYSWWSYRFKAREKNSGWRIDYFLTSDSLKDRLKGAHIYTDIFGSDHCPVELTIEL 252
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 153/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+R S + K F + F ++ D ++FC+QE + +L EG
Sbjct: 3 KLVSWNVNGLR--SCIGKGF----------WDFFKEVDADIFCVQETKLQEGQLELEIEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K KPV + G G EH
Sbjct: 51 YEHYWNYAVKKGYSGTAIFTKIKPVSSSCGI---------------GIEEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+E+E+F+LVNVY P +K +L L ++ W R +LK
Sbjct: 88 ---------------NEGRVITLEFEEFFLVNVYTPNSKRELERLEYRMKWEDDFREYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GD+NVAH ID+ P +N +GFT++ER FS L+ GF+D R LYP
Sbjct: 133 QLEQTKPVIICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQLLEHGFVDTFRMLYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + K GWR+DYF +S LK + EI+ D GSDH P
Sbjct: 193 DKTGAYTWWSYMFKSREKNAGWRIDYFCVSGALKDRIEAAEIYSDTMGSDHCP 245
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 156/301 (51%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S+++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKDEDADIVCLQETKIQDGQVDLEPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK KP+ V +G G EH +
Sbjct: 50 GYHVYWNYAEKKGYSGTAVFSKQKPLNVMYGI---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E Y++ VY P AK L + +L W L +
Sbjct: 90 ------------------GRVITLEFENMYVMTVYTPNAKRGLERIDYRLQWEEALLAFI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D R+LY
Sbjct: 132 LELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRFLEAGFIDSFRYLY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWRLDYF++S++LK + D +I V GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKGQIEDAKISAQVLGSDHCPVELTIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + +K GWR+DYFL S LK+ L D I+ D GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARNKDIGWRIDYFLCSNPLKTRLKDALIYKDTLGSDHCPVGLEL 249
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K LNE K VV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTLEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNDGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 TLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 162/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F+++ + ++FCIQE + ++ +G
Sbjct: 2 KLVSWNVNGIRA--CVKKGFLDFFMEE----------NADIFCIQESKLQEGQIELNLDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K KP+ V++G + + +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKEKPLYVSYGIAGR------------------------ET 85
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE GR +T+E+E FYL+NVY P +K DL+ L +L W +R ++
Sbjct: 86 EPE--------------GRSLTLEFENFYLLNVYTPNSKRDLARLPYRLEWEDEIREYIL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH ID+ +N G SGFT +ER ++ L GF+D R+LYP
Sbjct: 132 ELEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSEGFVDSFRYLYP 191
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YT+W Y + + GWR+DYF++S +LK H+ D +I+ D+ GSDH P +L + L
Sbjct: 192 EQEGAYTWWSYMAKVRERNIGWRIDYFIVSDKLKEHILDSKIYCDIMGSDHCPIMLEMAL 251
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLNVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLNVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA K F D ++FCIQE + +L G
Sbjct: 8 KLISWNVNGIRA------------CAGKGFMDFFNSIDADIFCIQESKMQEGQLTLDMPG 55
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K K + T G G +EH +
Sbjct: 56 YYQYWNYADKKGYSGTAIFTKEKSLSETKGI---------------GIDEHDHE------ 94
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EYE FY+V VY P ++ +L+ L ++ W R +LK
Sbjct: 95 -----------------GRVITLEYENFYMVTVYTPNSQNELARLDYRMKWEDDFRAYLK 137
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GD+NVAHN ID+ P TN +GFT +ER + LD GF+D R+ YP
Sbjct: 138 KLEENKPVIVCGDMNVAHNEIDLKNPKTNRKNAGFTDEEREKMTVLLDDGFIDTFRYFYP 197
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y + K GWR+DYFL S+ LK L D +IH D+ GSDH P L +++
Sbjct: 198 DQENIYSWWSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIHTDIMGSDHCPVELDIDM 257
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLVSWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV SK +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFSKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 153/300 (51%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K SWNVNG+RA VNK F F + D + FC+QE + ++ E E
Sbjct: 2 KFVSWNVNGLRA--SVNKGFLDYF----------NEMDADFFCLQETKLQEGQIKLELGE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH FW ++GY+G A+ +K KP+ +++G E D E
Sbjct: 50 AYHLFWHYAEKKGYSGTAIFTKHKPLSISYGLG-----------------EEDEDTE--- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EYE FYLV VY P A+ DLS L +L W RG+L
Sbjct: 90 ------------------GRVITLEYENFYLVTVYTPNARRDLSRLDFRLAWEEMFRGYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+E KPV++ GDLNVAH ID+ +N G SGFT +ER + LD GF+D R+LY
Sbjct: 132 IKLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDAGFIDSFRYLY 191
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ YT+W + + + GWR+DYFL S +L + + I + GSDH P +L L+
Sbjct: 192 PDRTDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEAGIDSQILGSDHCPVVLTLD 251
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNAFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNTGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 159/301 (52%), Gaps = 59/301 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-----LEKLP 790
K+ SWNVNG+RA QK + + D ++FCIQE + +E L
Sbjct: 2 KLVSWNVNGLRA------------CLQKGFMDYFKAIDADIFCIQETKLQENQKDIEGLD 49
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
GY+AFW ++GY+G AV +K KP+ V++G
Sbjct: 50 --LNGYYAFWNFAEKKGYSGTAVFTKYKPLSVSYGIGT---------------------- 85
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
P H + +GRV+T+EYE+F+LVN Y P ++ L+ L ++ W
Sbjct: 86 ---PHHDK-------------EGRVITLEYEKFFLVNTYTPNSQRGLTRLDYRMQWEEDF 129
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
R +L L+ +KPV+L GDLNVAH ID+ P N +GFT +ER + L+ GF+D
Sbjct: 130 RSYLLKLDSLKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTILLNSGFIDTF 189
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+ YP+ + YT+W Y ++ K GWR+DYF++S++LK +L D +IH +V GSDH P +
Sbjct: 190 RYFYPDKKDAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVMGSDHCPVV 249
Query: 1029 L 1029
L
Sbjct: 250 L 250
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRISWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH +D+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+IS++LK ++D +I+ +V GSDH P L+++
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHID 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + KDGF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKDGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 TLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 190 bits (482), Expect = 4e-45, Method: Composition-based stats.
Identities = 110/298 (36%), Positives = 149/298 (50%), Gaps = 53/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA VNK F+ F Q D ++FC+QE + ++
Sbjct: 2 KLVSWNVNGLRAC--VNKGFSEYFAQT----------DADIFCVQETKLQEGQIALDYPD 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K KP+ V +G S
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKVKPLSVRYGLEED-------------------------S 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE GR++T+E++ FYLV VY P AK DLS L +L W R ++
Sbjct: 85 EPE--------------GRIITLEFDGFYLVTVYTPNAKRDLSRLDYRLEWEDRFRRYIA 130
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ +KPV+L GDLNVAH ID+ N G SGFT +ER ++ L GF+D RH YP
Sbjct: 131 GLDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYP 190
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W + + GWR+DYFL S +L L D +IH V GSDH P +L L
Sbjct: 191 EQTDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVLGSDHCPVVLTL 248
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK F + + ++FC+QE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMQKGFADFFNREEADIFCVQETKMHPEQADFAFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G AV ++ P+ V ++ G EH +
Sbjct: 50 YQSFWNSAEKKGYSGTAVFTRVPPLSVR---------------YDMGEPEHTGE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+TVE E F+LVNVY P ++ DL L ++ W R +L
Sbjct: 89 -----------------GRVITVESEAFFLVNVYTPNSQRDLVRLDYRMRWEDAFRAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN KPVV+ GD+NVAH ID+ P +N+ +GFT +ER ++ L+ GF+D R LYP
Sbjct: 132 TLNRDKPVVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQKMTDLLEAGFIDTFRALYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y + + GWR+DYFL+S +L+ + D I+ DV GSDH P L L+
Sbjct: 192 EQKDAYTWWSYMRKARERNAGWRIDYFLVSDRLRGQVEDSTIYADVPGSDHCPVGLLLH 250
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 156/301 (51%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P+ V +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLHVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E Y++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVYVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELEKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 155/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA K F Q + + FCIQE +C ++ +
Sbjct: 2 KFISWNVNGIRA------------CLGKGFLDFFHQIEADFFCIQETKCQAGQVELALDD 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K P+ V +G VG
Sbjct: 50 YEQYWNYAQKKGYSGTAIFTKHTPLSVMYG----VG------------------------ 81
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D D+GR++T+EY+ FYLVNVY P A+ DL+ L ++L W L G+L+
Sbjct: 82 ----------DEDSQDEGRIITLEYQNFYLVNVYTPNAQRDLARLPLRLTWEDRLAGYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN KPVV GDLNVAH ID+ +N+G SGFT +ER FS L GF+D R+ +P
Sbjct: 132 DLNSKKPVVYCGDLNVAHTEIDLKNAKSNVGNSGFTYEERAKFSELLASGFVDSFRYKHP 191
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N +T+W Y ++ + GWR+DYF++S+QLK+ + IH + GSDH P L L++
Sbjct: 192 NETDHFTWWSYMNKVRERNIGWRIDYFIVSEQLKNQIDQATIHPHIMGSDHCPIELQLHV 251
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +K F +F + + F FC+QE + +L EG
Sbjct: 3 KFISWNVNGLRA--CYDKGFVDVFHRLEADF----------FCLQETKMQEGQLDAKFEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH++W ++GY+G A+ SK KP+ VT+G ++ H H
Sbjct: 51 YHSYWNYAEKKGYSGTAIFSKVKPLSVTYGLGIEE----HDH------------------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E E FYL+ VY P ++E+L L ++ W R +LK
Sbjct: 89 ----------------EGRVITLELESFYLITVYTPNSQEELRRLDYRMKWEDDFRAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF D R+ YP
Sbjct: 133 KLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTTLLESGFTDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
IY++W Y + K GWR+DYFL S LK L I+ D+ GSDH P L + L
Sbjct: 193 EQEGIYSWWSYRFKAREKNSGWRIDYFLTSDSLKDRLKGAHIYTDIFGSDHCPVELTIEL 252
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/299 (37%), Positives = 154/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFFTSV----------DADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV SKTKP+ V++G G EH ++
Sbjct: 50 YFDFWNCALKKGYSGVVTFSKTKPLNVSYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+++FYLVNVY P ++ L+ L ++ W R LK
Sbjct: 89 -----------------GRVITCEFDKFYLVNVYTPNSQRALARLEYRMSWEIEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P N +GF+ +ER FS L+ GF+D RH YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKFSELLNAGFIDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y + + GWR+DYFL S LK + D +I+ + GSDH P L LN
Sbjct: 192 TKEKAYTWWSYMQQSRERNIGWRIDYFLCSNSLKIEIKDAKIYESILGSDHCPVGLELN 250
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 169/350 (48%), Gaps = 61/350 (17%)
Query: 691 ENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQ 750
EN G S+ + + E PI+ + DP + K D N KI SWNV+G+RAW +
Sbjct: 16 ENDSGSASAKKPKKTKEPEAPIL-YEDPPDKMTSK---DGRSANMKITSWNVDGLRAWVK 71
Query: 751 VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFW-FPGTR 805
K G ++R+ +V C+QE +C + LP PE H +W +
Sbjct: 72 ------------KGGLDWVREEAPDVLCLQETKCAEKDLPAEITSMPEYPHKYWAVSDDK 119
Query: 806 QGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYA 865
+GY+GVA+LSKT+P++VT+G G EH +
Sbjct: 120 EGYSGVAMLSKTEPLKVTYGI---------------GKEEHDKE---------------- 148
Query: 866 DASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVL 925
GRV+T E+ F+LV Y P A L L + W+ + +L L+ KP+VL
Sbjct: 149 -------GRVITAEFPTFFLVTAYVPNASRGLVRLDYRKTWDVDFQAYLTELDVQKPLVL 201
Query: 926 AGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWP 984
GDLNVAH ID+ P N +GFT +ER FS L GF+D R LYP YT+W
Sbjct: 202 CGDLNVAHQEIDLKNPKGNKKNAGFTPEEREGFSQLLAAGFVDSFRELYPEQANAYTFWT 261
Query: 985 Y-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y + +K GWRLDYFL+S L L D +I GSDH P L+L +
Sbjct: 262 YMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAMGSDHCPITLHLAV 311
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFRG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 155/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA T FL+ F ++ + ++FCIQE + ++ EG
Sbjct: 2 KLISWNVNGLRA------CVTKGFLE------FFKEVNADIFCIQESKLQEGQIELELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G A+ +K KP+ T+G G EH
Sbjct: 50 YHQYWNYAERKGYSGTAIFTKKKPLSFTYGI---------------GIEEHDK------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E++ FY+V VY P +K+ L+ L ++ W + R +LK
Sbjct: 88 ----------------EGRVITLEFDDFYMVTVYTPNSKDQLARLEYRMKWENDFRDYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL + KPV++ GDLNVAH ID+ P TN +GFT +ER F+ FL GF+D +R+ P
Sbjct: 132 SLEKNKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTEFLSAGFIDTYRYFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ GWR+DYF +S LK L +IH +V GSDH P
Sbjct: 192 DKEGAYSWWSYRFNARKNNAGWRIDYFCVSDCLKERLVSADIHTEVMGSDHCP 244
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 GYHVYWNYALKKGYSGTAVFSKQEPLQVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +K + ++ D ++FC+QE + ++ +
Sbjct: 1 MKLVSWNVNGLRA------------CVRKGFLDYFQEVDADIFCVQETKLQSGQIELDLK 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV +K +P+ V +G D+E+ P
Sbjct: 49 GYHQYWNYAEKKGYSGTAVFTKEEPLSVHYGLG---------------------DVENEP 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+ +FYLVNVY P ++ DL+ L +L W +R +L
Sbjct: 88 -----------------EGRIITLEFPKFYLVNVYTPNSQRDLARLPYRLEWEDRIRSYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P +N G SGFT +ER S L+ GF+D R+ Y
Sbjct: 131 IDLDKDKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSELLNAGFIDTFRYFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P YT+W Y ++ + GWR+DYF+ SK+L + + + EIH + GSDH P +L L+
Sbjct: 191 PEKEGAYTWWSYINKARERNIGWRIDYFIASKRLANIIKNAEIHSHIMGSDHCPIVLELD 250
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 154/296 (52%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA +K + + + ++FCIQE + ++
Sbjct: 2 KLISWNVNGIRA------------CVKKGFLEYFDEVEADIFCIQETKLQEGQIDLMLND 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K KP+ V +G
Sbjct: 50 YEQYWNYAEKKGYSGTAVFTKIKPISVAYGID---------------------------- 81
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
I++ D +GRV+T+EY+ FYLVNVY P A+ L+ L ++ W R +L
Sbjct: 82 ------IEHHDT----EGRVITLEYDNFYLVNVYTPNAQPKLARLEYRMQWEDDFRRYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAHN ID+ P +N GF+ +ER F+N LD GF+D R YP
Sbjct: 132 DLDEKKPVIVCGDLNVAHNEIDLKNPKSNRKNPGFSDEERGKFTNLLDSGFIDSFRFFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ +YT+W Y ++ GWR+DYF +S +LK+ L + EIH D+ GSDH P +L
Sbjct: 192 DATEMYTWWSYRFNARENNAGWRIDYFCVSNKLKNELKNAEIHMDILGSDHCPVVL 247
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 189 bits (481), Expect = 5e-45, Method: Composition-based stats.
Identities = 115/304 (37%), Positives = 157/304 (51%), Gaps = 59/304 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF +R D +V +QE+R E+ PE PE
Sbjct: 2 KLASWNVNGLRA-------------ALKKGFWDVVRGLDADVLGLQEVRA--EEPPELPE 46
Query: 795 G---YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
G Y +W PG R+GYAGVAVL + P+ VT+G
Sbjct: 47 GLGGYRWYWNPGDRKGYAGVAVLVRVPPLDVTYGIG------------------------ 82
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
H E ++GRV+T+EYE++Y+VN Y P A L L KL ++ +
Sbjct: 83 ----HDEFD----------EEGRVITLEYERYYVVNAYFPNAGRGLPRLGYKLAFDQAIE 128
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+L+ L K VVL GDLNVAH ID+A P N +GFT +ER + FL G++D R
Sbjct: 129 NYLEGLRARKGVVLMGDLNVAHREIDIARPKQNQKSAGFTPEERAWIDAFLKKGWIDTFR 188
Query: 972 HLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
HL+P+ YT+W Y ++ +K GWR+DY LIS+ L HL D I+ D SDH P +
Sbjct: 189 HLHPDATGAYTWWTYRFNARAKNIGWRIDYILISEDLLPHLMDAYIYYDAYASDHVPVVA 248
Query: 1030 YLNL 1033
L++
Sbjct: 249 VLDV 252
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKIQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 152/295 (51%), Gaps = 52/295 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA K F D ++FCIQE + E+ +GY
Sbjct: 3 SWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKGYFD 50
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 51 FWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE--------- 86
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK+L
Sbjct: 87 --------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALE 132
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-H 977
KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YPN
Sbjct: 133 LKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKE 192
Query: 978 RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 193 KAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 247
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K LNE K VV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTLEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + +K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARNKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 189 bits (481), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLNVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ +EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINI---------------DEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTLLKDALIYKDILGSDHCP 244
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSINADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ ++ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKNILGSDHCPVGLEL 249
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 189 bits (480), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 189 bits (480), Expect = 6e-45, Method: Composition-based stats.
Identities = 105/300 (35%), Positives = 156/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + T FL + + D +VFCIQE +C ++ G
Sbjct: 2 KCVSWNVNGVRA------VLTKGFL------DYFKAVDADVFCIQETKCQEGQVEIELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ SK +P+ V++G G EH +
Sbjct: 50 YYQYWNYAQKKGYSGTALFSKKEPLSVSYGL---------------GIAEHDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E+E+ Y+V VY P A+ +L+ + ++ W + +LK
Sbjct: 88 ----------------EGRVITAEFEEAYVVTVYTPNAQNELARIDYRMAWEDAFKAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P TN G +GF+ +ER F L+ GF+D R+ YP
Sbjct: 132 KLEENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGKFGELLEAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYFL S+ LK L I ++ GSDH P IL +N+
Sbjct: 192 DLEGAYSWWSYRFKAREKNTGWRIDYFLASEVLKDKLVGAAIDAEILGSDHCPVILEINI 251
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRIITCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 164/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEKSNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L + ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERVDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEIMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ P+
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPD 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P+RV +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLRVMYGI---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P +K L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENLFVMTVYTPNSKRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ L+ GF+D RH+Y
Sbjct: 132 LELDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRLLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWRLDYF++S++L+ + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIEDASISADVMGSDHCPVELMIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEASNADIFCLQEIKLQSGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +RHLY
Sbjct: 132 KQLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDTYRHLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S ++K ++D +I+ ++ GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSDRIKGQITDAKINSEIIGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 189 bits (480), Expect = 7e-45, Method: Composition-based stats.
Identities = 105/301 (34%), Positives = 159/301 (52%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA K GF +F + ++FC+QE + ++ +
Sbjct: 2 KFVSWNVNGLRACV-------------KKGFLAFFAETGADIFCVQETKLQEGQIALDLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G AV +K +P+ V +G G NR
Sbjct: 49 GYYQYWNYAERKGYSGTAVFTKKEPLSVRYGV-----------GENR------------- 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ PE GR++T+EYE FYLVNVY P ++ DL+ L +L W + +R +L
Sbjct: 85 TEPE--------------GRILTLEYEDFYLVNVYTPNSQRDLARLGYRLEWENRMRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV++ GD+NVAH ID+ +N+G SGFT +ER+ + L+ GF+D R+ Y
Sbjct: 131 TDLDKKKPVIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGLLNSGFIDSFRYFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P YT+W Y ++ + GWR+DYFL+SK+L L ++ ++ GSDH P L N
Sbjct: 191 PEREGAYTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKGAGMYPEIMGSDHCPVFLATN 250
Query: 1033 L 1033
Sbjct: 251 F 251
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNIFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ +EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINI---------------DEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLVSWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV SK +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCALKKGYSGVVTFSKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNDGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 189 bits (480), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F + + ++FCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFF----------NEVNADIFCIQESKMQKDQGDFSFQG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GV VLSK KP++V + DM G S
Sbjct: 50 YSEYWNSAEKKGYSGVVVLSKIKPLQVAY------------------------DM--GIS 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T EYE+FYLVNVY P AK +L L ++ W R +K
Sbjct: 84 HHD------------KEGRIITAEYERFYLVNVYTPNAKRELERLEYRMEWEDDFRAFVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPVV+ GDLNVAH ID+ P TN +GFT +ER S L+ GF+D RH YP
Sbjct: 132 KLKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSELLESGFIDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + + GWR+DYFL S L+SHL D +I+ + GSDH P L +++
Sbjct: 192 TLEGAYSWWSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPHIFGSDHCPVGLSMDM 251
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERKKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTCLKDALIYKDILGSDHCP 244
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 163/329 (49%), Gaps = 61/329 (18%)
Query: 710 VPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM 769
PI+ + DP + K +D N KI SWNV+G+RAW + K G ++
Sbjct: 38 APIL-YEDPPDKMTSKDGRDA---NMKITSWNVDGLRAWVK------------KKGLDWV 81
Query: 770 RQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTH 824
R+ + +V C+QE +C + LP PE +W ++GY+GVA+LSKT+P++VT+
Sbjct: 82 REENPDVLCLQETKCAEKSLPADITSMPEYPFKYWAGSDDKEGYSGVAMLSKTEPIKVTY 141
Query: 825 GFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFY 884
G G EH + GRV+T E+ F+
Sbjct: 142 GI---------------GKEEHDKE-----------------------GRVITAEFSSFF 163
Query: 885 LVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN 944
LV VY P + L L + W+ R +L L+ KPVVL GDLNVAH ID+ P N
Sbjct: 164 LVTVYVPNSGRGLVRLDYRKTWDVDFRTYLSELDIQKPVVLCGDLNVAHQEIDLKNPKGN 223
Query: 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLI 1002
+GFT +ER FS L+ GF+D R LYP Y++W Y + K GWRLDYF++
Sbjct: 224 KKNAGFTAEEREGFSQLLEAGFVDSFRELYPEQTHAYSFWTYMMNARDKNVGWRLDYFVL 283
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
S L L D +I V GSDH P L++
Sbjct: 284 SSSLLPALCDSKIRNQVRGSDHCPITLHI 312
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ +EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINI---------------DEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 155/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F ++ D ++FCIQE + ++ +G
Sbjct: 3 KLISWNVNGLRA--CINKGFLDYF----------KKADADIFCIQESKVQPGQIELELDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G AV ++ KP+ V +G G +EH +
Sbjct: 51 YHQYWNYAERKGYSGTAVFTRIKPLYVQNGI---------------GIDEHDRE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ +YLVNVY P AK++L L ++ W R +L
Sbjct: 90 -----------------GRVITLEFDNYYLVNVYTPNAKKELERLDYRMKWEDDFRNYLV 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GD+NVAH ID+ P +N +GFT +ER F+ L+ GF+D R YP
Sbjct: 133 GLKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTELLNAGFIDTFRFFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y ++ ++ GWR+DYF +S++LK L IH DV GSDH P
Sbjct: 193 DKTGAYTWWSYMFNARARNAGWRIDYFCVSEELKDRLVSASIHDDVMGSDHCP 245
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 155/294 (52%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA VNK F F +Q D ++FC+QE + ++ E
Sbjct: 2 KLVSWNVNGLRA--CVNKGFLDYF----------KQTDADIFCVQETKLQEGQIELELGS 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G AV ++ +P+ V +G D E
Sbjct: 50 DYRQYWNYAQKKGYSGTAVFTRLEPLSVRYGIE--------------------EDEE--- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GR++T+E++ FYLVNVY P AK DLS LS +L W R +L
Sbjct: 87 --PE--------------GRIITLEFQHFYLVNVYTPNAKRDLSRLSYRLEWEERFRRYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ +KPV++ GDLNVAH ID+ +NLG SGFT++ER ++ L GF+D R Y
Sbjct: 131 QQLDAVKPVIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLLAAGFIDSFRFFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ +Y++W Y + + GWR+DYFL+S +L L D EI V GSDH P
Sbjct: 191 PDRTDVYSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAEIDCHVLGSDHCP 244
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSHPLKTRLKDALIYKDILGSDHCP 244
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 6_1_45]
Length = 254
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNGIRA QK F ++ D +VFCIQE + +L G
Sbjct: 2 RLVSWNVNGIRA------------CMQKGFMDFFKEIDADVFCIQETKMQPGQLEIETPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V SK KP+ VT+G ++ H H
Sbjct: 50 YYQYMNSAEKKGYSGTMVFSKQKPLSVTYGLGIEE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE FYLV VY P +K+ L L +++W R +L
Sbjct: 88 ----------------EGRVITCEYEDFYLVCVYTPNSKDGLLRLDYRMVWEDAFRAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE K V++ GDLNVAH ID+ P TN +GFT +ER S L+ GF+D R+LYP
Sbjct: 132 KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSVLLESGFIDSFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL+S+ K + + IH D+ GSDH P
Sbjct: 192 EQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIHTDIYGSDHCP 244
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 150/297 (50%), Gaps = 51/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F+ F R+ D + FC+QE + +L EG
Sbjct: 2 KLISWNVNGLRACE--GKGFSDTF----------RELDADFFCLQETKMQAGQLDLAFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ VT+G G +EH +
Sbjct: 50 YESYWNYAEKKGYSGTAIFTKHHPLSVTYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E FYLV Y P +++ L L ++ W + R +LK
Sbjct: 89 -----------------GRVITLEMEDFYLVTCYTPNSQDGLKRLDYRMTWENDFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH ID+ P TN +GFT QER FS L GF D R+ YP
Sbjct: 132 GLDAKKPVILCGDLNVAHQEIDLKNPKTNRMNAGFTDQEREQFSTLLASGFTDSFRYKYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y + K GWR+DYF+IS +L+ + D IH + GSDH P L L
Sbjct: 192 EQVTYSWWSYRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQILGSDHCPVELTL 248
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 189 bits (479), Expect = 1e-44, Method: Composition-based stats.
Identities = 103/293 (35%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA +NK F F +++ ++FC+QE + +++P EG
Sbjct: 2 KLISWNVNGIRAC--LNKGFMDFFEKEQ----------ADIFCLQETKIQADQIPFQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P++VT+G G EH +
Sbjct: 50 YHQYWNYAQKKGYSGTAVFTKQEPLKVTYGI---------------GKEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FYLV VY P ++ L+ L ++ W LK
Sbjct: 89 -----------------GRVITLEFEGFYLVTVYTPNSQRGLARLEYRMTWEEEFLSFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV+ GDLN+AH ID+ P TN +GF+ +ER F L GF+D R+ YP
Sbjct: 132 NLEQAKPVIFCGDLNMAHTEIDLKNPKTNRKNAGFSDEERAKFGELLKKGFIDTFRYFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y ++ + GWR+DYF +S+ LK L D I+ ++ GSDH P
Sbjct: 192 DKTEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQLRDAVIYSEILGSDHCP 244
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNGIRA QK F ++ D +VFCIQE + +L G
Sbjct: 2 RLVSWNVNGIRA------------CMQKGFMDFFKEIDADVFCIQETKMQPGQLEIETPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V SK KP+ VT+G ++ H H
Sbjct: 50 YYQYMNSAEKKGYSGTMVFSKQKPLSVTYGLGIEE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE FYLV VY P +K+ L L +++W R +L
Sbjct: 88 ----------------EGRVITCEYEDFYLVCVYTPNSKDGLLRLDYRMVWEDAFRAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE K V++ GDLNVAH ID+ P TN +GFT +ER S L+ GF+D R+LYP
Sbjct: 132 KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSVLLESGFIDSFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL+S+ K + + IH D+ GSDH P
Sbjct: 192 KQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIHTDIYGSDHCP 244
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 149/299 (49%), Gaps = 53/299 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA VNK F+ F Q D ++FC+QE + ++
Sbjct: 1 MKLVSWNVNGLRA--CVNKGFSEYFAQT----------DADIFCVQETKLQEGQIALDYP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G AV +K KP+ V +G
Sbjct: 49 DYHQYWNYAEKKGYSGTAVFTKVKPLSVRYGLEED------------------------- 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
S PE GR++T+E++ FYLV VY P AK DLS L +L W R ++
Sbjct: 84 SEPE--------------GRIITLEFDGFYLVTVYTPNAKRDLSRLDYRLEWEDRFRRYI 129
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ +KPV+L GDLNVAH ID+ N G SGFT +ER ++ L GF+D RH Y
Sbjct: 130 AGLDAVKPVILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFY 189
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P YT+W + + GWR+DYFL S +L L D +IH V GSDH P +L L
Sbjct: 190 PEQTDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVLGSDHCPVVLTL 248
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 160/301 (53%), Gaps = 59/301 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-----LEKLP 790
K+ SWNVNG+RA QK + + D ++FCIQE + +E L
Sbjct: 2 KLVSWNVNGLRA------------CLQKGFMDYFKAIDADIFCIQETKLQENQKDIEGLD 49
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
GY+AFW ++GY+G AV +K KP+ V++G
Sbjct: 50 --LNGYYAFWNFAEKKGYSGTAVFTKYKPLSVSYGIGT---------------------- 85
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
P H + +GRV+T+EY++F+LVN Y P ++ L+ L+ ++ W
Sbjct: 86 ---PHHDK-------------EGRVITLEYKKFFLVNAYTPNSQRGLTRLNYRMEWEEDF 129
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
R +L L+ +KPV+L GDLNVAH ID+ P N +GFT +ER + L+ GF+D
Sbjct: 130 RSYLLKLDSVKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTILLNSGFIDTF 189
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+ YP+ + YT+W Y ++ K GWR+DYF++S++LK +L D +IH +V GSDH P +
Sbjct: 190 RYFYPDKKDAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVMGSDHCPVV 249
Query: 1029 L 1029
L
Sbjct: 250 L 250
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 157/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK + + + ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA------------AVQKGFLDYFKNENADIFCVQETKLQEGQIELELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K KP+ V++G G EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKKPIEVSYGL---------------GIEEHDK------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ FY++ VY P ++E+L+ LS ++ W R ++
Sbjct: 88 ----------------EGRVITLEYDDFYMITVYTPNSQEELARLSYRMSWEDEFRNYVM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+++KPV++ GDLNVAH ID+ P +N +GF+ +ER F+ L GF+D RH YP
Sbjct: 132 KLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAKFTELLKNGFVDSFRHFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y ++ GWR+DYF++S++LK + EIH + GSDH P +L L
Sbjct: 192 ELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETLGSDHCPVVLKL 249
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 162/301 (53%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA L + + S++ + ++++FC+QEI+ ++ PE
Sbjct: 1 MKLMSWNVNGLRA-----------LLTKMNFNSYLEEENVDIFCLQEIKLQDGQIKLEPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G A+ +K +P+ VT+G +K EH +
Sbjct: 50 GYHVYWNYAEKKGYSGTAIFTKKEPLAVTYGLGIK---------------EHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++T+E+E Y++ VY P AK L + ++ W ++
Sbjct: 90 ------------------GRLITLEFENMYVITVYTPNAKRGLERIDYRMDWEDAFLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L+ KPVVL GDLNVAH ID+ P N +GF+ QER FS L+ GF+D R+L+
Sbjct: 132 KALDVKKPVVLCGDLNVAHQEIDLKNPKANRKNAGFSDQERERFSQMLEEGFIDTFRYLH 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + +K GWRLDYF++S++LK + +I +V GSDH P L ++
Sbjct: 192 PDQEGAYSWWSYRMNARAKNVGWRLDYFIVSERLKKQIRGAKICNEVMGSDHCPVELTID 251
Query: 1033 L 1033
L
Sbjct: 252 L 252
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 188 bits (478), Expect = 1e-44, Method: Composition-based stats.
Identities = 111/299 (37%), Positives = 149/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA QK F+ Q ++FC+QE + E+ EG
Sbjct: 2 RLVSWNVNGLRA------------CMQKGFKDFLEQSGADIFCVQETKMQPEQANFAFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHAFW ++GY+GV LSK +P+ V +G G EH D+E
Sbjct: 50 YHAFWNSAVKKGYSGVLTLSKEEPLSVRYGI---------------GIAEH--DLE---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+ EY QFYLVNVY P A+ L L +L W RG L
Sbjct: 89 -----------------GRVVVCEYSQFYLVNVYVPNAQRGLLRLPYRLSWEKAFRGFLS 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L K V++ GDLNVAH ID+ P N +GF+ ER+ FS L GF+D +RH YP
Sbjct: 132 GLVAHKGVLVCGDLNVAHTEIDLTNPQANRYNAGFSDPERHAFSALLQEGFIDTYRHFYP 191
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y + + GWR+DYFL S+ L+ L + I+ + GSDH P L L+
Sbjct: 192 EQKEAYTWWSYIGQARERNVGWRIDYFLASQNLQDTLKNAHIYTHIFGSDHCPVGLELH 250
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 155/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F ++ D ++FCIQE + ++ +G
Sbjct: 3 KLISWNVNGLRA--CINKGFLDYF----------KKADADIFCIQESKVQPGQIELELDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G AV ++ KP+ V +G G +EH +
Sbjct: 51 YHQYWNYAERKGYSGTAVFTRIKPLCVQNGI---------------GIDEHDRE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ +YLVNVY P AK++L L ++ W R +L
Sbjct: 90 -----------------GRVITLEFDNYYLVNVYTPNAKKELERLDYRMKWEDDFRNYLV 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GD+NVAH ID+ P +N +GFT +ER F+ L+ GF+D R YP
Sbjct: 133 GLKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTELLNAGFIDTFRFFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y ++ ++ GWR+DYF +S++LK L IH DV GSDH P
Sbjct: 193 DKTGAYTWWSYMFNARARNAGWRIDYFCVSEELKDRLVSASIHDDVMGSDHCP 245
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINI---------------GEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTCLKDALIYKDILGSDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F ++ Q D ++ C+QEI+ +L
Sbjct: 2 KLISWNVNGLRA--VMNKGFME----------YIEQEDPDIICLQEIKLAKGQLEVDLPQ 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH F+ R+GY+G A+ +K +P+ +H + G EH +
Sbjct: 50 YHEFYNYAERRGYSGTAIFTKEEPL---------------SHSYGIGIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EYE FYLV Y P +K L L + +W R +L
Sbjct: 89 -----------------GRVITLEYEDFYLVTCYTPNSKRGLLRLDYRQVWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+A P +N +GFT +ER F+ LD GF+D R+ YP
Sbjct: 132 KLNKTKPVILCGDLNVAHKEIDLANPKSNRRNAGFTDEERQKFTELLDAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ +Y++W Y + + GWR+DYF++S+ + L D IH + EGSDH P +LYL
Sbjct: 192 DIPEMYSWWSYITKARERNVGWRIDYFVVSEDFEDRLLDASIHMEQEGSDHCPVVLYL 249
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 151/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +KD R+ D + FCIQE + ++ CPEG
Sbjct: 2 KFISWNVNGLRA------------CMKKDFDKTFRELDADFFCIQESKLQEGQIEYCPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
++ +W ++GY+G A+ +K ++VT+G +G H H
Sbjct: 50 WNEYWNYAEKKGYSGTAIWAKKPALQVTYG----IGEEEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ F+LV VY P +++ L L ++ W R +L
Sbjct: 88 ----------------EGRVITLEYDTFFLVTVYTPNSQDGLKRLDYRMTWEDSFRAYLG 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P TN +GFT +ER F+ LD GF D R+L+P
Sbjct: 132 KLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFTDSFRYLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYFL S+++K + IH ++ GSDH P
Sbjct: 192 EDVEYSWWSYRFHAREKNAGWRIDYFLTSERVKEKIEQAVIHQEIFGSDHCP 243
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 188 bits (478), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLNVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 VLELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ ++ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKNILGSDHCPVGLEL 249
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G ++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 159/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ +WNVNG+RA VNK F F + D ++F +QE + ++ G
Sbjct: 2 KLVTWNVNGLRA--CVNKGFMD----------FFNEVDSDIFSVQETKLQKGQIEMDIPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A SK KP+ V G + F++
Sbjct: 50 YEEYWDYAEKKGYSGTATFSKIKPISVKTG--------LEEEKFSK-------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE FYLVNVY P ++ +L L ++ W + +L
Sbjct: 88 ----------------EGRVITAEYENFYLVNVYTPNSQNELKRLDYRMEWEDYFADYLC 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+++KPV++ GDLNVAH ID+ P TN +GFTI+ER+ ++ L GF+D +R+LYP
Sbjct: 132 ELDKVKPVIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKMTSLLKRGFVDSYRYLYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +YT+W Y ++ GWR+DYF++S ++K + D++I DV GSDH P +L + L
Sbjct: 192 DIEGVYTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKIFSDVMGSDHCPVLLDIEL 251
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 152/295 (51%), Gaps = 56/295 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA K F Q D + FCIQE +C ++ EG
Sbjct: 2 KFISWNVNGIRA------------CLGKGFLEFFHQIDADFFCIQETKCQAGQVVLSIEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K P+ V +G VG
Sbjct: 50 YEQYWNYAQKKGYSGTAIFTKHTPLSVKYG----VGA----------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+ D+GR++T+EY+ FYLVNVY P A+ DL+ L ++L W L +L+
Sbjct: 83 ---------EDSQ--DEGRIITLEYKNFYLVNVYTPNAQRDLARLPLRLQWEDRLANYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN KPVV GDLNVAH ID+ +N+G SGFT +ER FS L+ GF+D R+ +P
Sbjct: 132 ELNCQKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESGFVDSFRYKHP 191
Query: 976 ---NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+H YT+W Y ++ + GWR+DYF++S QLK + IH + GSDH P
Sbjct: 192 EETDH--YTWWSYMNKVRERNIGWRIDYFVVSNQLKEQIESATIHPHIMGSDHCP 244
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINVE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 153/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA +K F F + + + FC+QE + +L E
Sbjct: 2 LKFISWNVNGLRA--CYDKGFADAF----------NRLEADFFCLQETKMQEGQLDVQFE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY ++W ++GY+G A+ SK KP+ VT+G ++ H H
Sbjct: 50 GYQSYWNYAEKKGYSGTAIFSKVKPLSVTYGLGIEE----HDH----------------- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+E E +YL+ VY P ++E+L L ++ W+ R +L
Sbjct: 89 -----------------EGRVITLELESYYLITVYTPNSQEELRRLDYRMKWDDDFRAYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L E KPV++ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF D R+ Y
Sbjct: 132 KKLEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTTLLESGFTDTFRYFY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P IY++W Y + K GWR+DYFL S LK L +IH D+ GSDH P L +
Sbjct: 192 PEQEGIYSWWSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDILGSDHCPVELTIE 251
Query: 1033 L 1033
L
Sbjct: 252 L 252
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K F IF Q D + FC+QE + +L EG
Sbjct: 3 KLISWNVNGLRA--CCDKGFRDIFTQL----------DADFFCLQETKMQEGQLDLSFEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K +P++VT+G G +EH +
Sbjct: 51 YTSYWNYAEKKGYSGTAIFTKHQPLQVTYGL---------------GIDEHDHE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E+F+LV VY P +++ L L ++ W+ R +L+
Sbjct: 90 -----------------GRVITLEMEKFFLVTVYTPNSQDGLKRLDYRMTWDDDFRAYLQ 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GDLNVAH ID+ P TN +GFT QER F LD GF+D R+ YP
Sbjct: 133 KLDQSKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLLLDAGFIDTFRYFYP 192
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL S L L + +IH ++ GSDH P
Sbjct: 193 EQTNIYSWWSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHTEIFGSDHCP 245
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T E+E FYLVN+Y P +++ LS L+ ++ W R LK
Sbjct: 89 -----------------GRIITCEFESFYLVNIYTPNSQQALSRLNYRMSWEVEFRRFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNTGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNSLKTRLKDALIYKDILGSDHCP 244
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLVSWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALIYKDILGSDHCP 244
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 162/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F +Q+ ++FC+QE + ++ +G
Sbjct: 2 KLISWNVNGLRA--CVGKGFLDYFKEQQ----------ADIFCLQETKLQEGQIELELDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K KP+ V +G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKEKPISVHYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY++ VY P ++E L+ L ++ W + +L
Sbjct: 89 -----------------GRVITLEFEKFYMITVYTPNSQEKLARLDYRMKWEEDFKNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GDLNVAH ID+ P TN +GF+ +ER + L+ GF+D R+ YP
Sbjct: 132 ELDKKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFSDEEREKMTKLLESGFVDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N IY++W Y + +K GWR+DYFL+S ++K ++ EIH ++ GSDH P +L ++L
Sbjct: 192 NKTDIYSWWSYRFSARAKNAGWRIDYFLVSDRIKENMKGAEIHTEILGSDHCPVLLNIDL 251
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVITCEFELFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKMRLKDALIYKDILGSDHCP 244
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis
str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. subtilis
str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp. subtilis
str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 DYHVYWNYAVKKGYSGTAVFSKQEPLQVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 53/313 (16%)
Query: 722 LEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQE 781
+ ++ + YP F SWNVNG+RA T F + F +Q D ++FC+QE
Sbjct: 1 MNYEHEKGDYPMRFI--SWNVNGLRA------CLTKGFPE------FFQQIDADIFCLQE 46
Query: 782 IRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNR 841
+ ++ GY +W ++GY+G AV SK +P+ V++G
Sbjct: 47 TKLQQGQVEMVLPGYRQYWNSAVKKGYSGTAVFSKKEPLSVSYGL--------------- 91
Query: 842 GSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLS 901
G EH + GRV+T+E+ FYL VY P ++E L LS
Sbjct: 92 GIEEHDQE-----------------------GRVITLEFPAFYLTTVYTPNSQEGLKRLS 128
Query: 902 VKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNF 961
++ W R +LK L+ KPVV+ GD+NVAH ID+ P TN +GFT +ER FS
Sbjct: 129 YRMEWEDAFRDYLKGLDSKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEERERFSQL 188
Query: 962 LDLGFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVE 1020
L GF+D +R LYP Y++W Y ++ GWR+DYFL+S ++ + D +IH V
Sbjct: 189 LAAGFIDSYRSLYPEKIEYSWWSYRFNARKNNAGWRIDYFLVSDRIGGRIQDAKIHTQVM 248
Query: 1021 GSDHAPQILYLNL 1033
GSDH P L L++
Sbjct: 249 GSDHCPVELDLDI 261
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 146/267 (54%), Gaps = 41/267 (15%)
Query: 763 KDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVR 821
K GF+ F Q ++FC+QEI+C ++ +GY +W ++GY+G AV +K +P+
Sbjct: 2 KKGFNDFFEQMQADIFCVQEIKCQEGQIELPFDGYEHYWNYAEKKGYSGTAVFTKQRPLS 61
Query: 822 VTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE 881
V +G + G D E+ +GRV+T+E+E
Sbjct: 62 VQYGLN-------------------GQDSEA-------------------EGRVLTLEFE 83
Query: 882 QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALP 941
+F+LVN Y P ++ DL+ LS +L W + HL L+ KPV+ GDLNVAH ID+
Sbjct: 84 KFFLVNCYTPNSQRDLARLSYRLKWEDEMLAHLTELDAQKPVIYCGDLNVAHEEIDICNV 143
Query: 942 LTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDY 999
+N G SGFT +ER + LD GF+D R+L+PN YT+W Y D ++ GWR+DY
Sbjct: 144 KSNYGNSGFTKEERAKMTRLLDSGFIDTFRYLHPNQEGAYTWWSYMRDVRARNIGWRIDY 203
Query: 1000 FLISKQLKSHLSDLEIHGDVEGSDHAP 1026
LIS +L+S L EIH ++ GSDH P
Sbjct: 204 LLISNRLQSTLQTSEIHAEILGSDHCP 230
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+ +K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSEGMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 151/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +K F +Q D +VFC+QE + ++ G
Sbjct: 2 KFVSWNVNGLRA------------CVKKGFLDFFQQVDADVFCLQETKLQKGQISLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K P+ VT+G G
Sbjct: 50 YEQYWNDAERKGYSGTAIFTKHSPLSVTYGI--------------------------GDH 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE ++GRV+T+E+E +Y+V +Y P AK DLS L +L W R +L
Sbjct: 84 FPE------------NEGRVITLEFETYYVVTMYTPNAKRDLSRLPYRLQWEKAAREYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPVV GDLNVAH IDV N+G SGFT +ER F L+ GF+D RH YP
Sbjct: 132 LLATQKPVVFCGDLNVAHQPIDVRNDRANVGNSGFTDEERAEFGKLLEAGFVDTFRHFYP 191
Query: 976 NHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +T+W Y + ++ GWR+DYFLIS+ L +L D IH V GSDH P L L+L
Sbjct: 192 DDEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVLGSDHCPIELCLDL 251
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH +D+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF+IS++L+ + D +I+ +V GSDH P L+++
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLEHKIIDAKINSEVMGSDHCPVELHID 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--CVTKGFKESFAEI----------DADFFCLQETKMQAGQLDIAFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V++G G +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPLSVSYGL---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E+FYLV Y P A++ L L ++ W + ++K
Sbjct: 89 -----------------GRVITLEMEKFYLVTCYTPNAQDGLKRLDYRMQWEDDFQAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P TN +GF+ +ER + FL GF+D R LYP
Sbjct: 132 RLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTQFLGNGFIDSFRTLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + K GWR+DYFL+S +L+ L D +IH +V GSDH P + LNL
Sbjct: 192 EQVTYSWWSYRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTEVYGSDHCPVEVELNL 250
>gi|317374848|sp|A0MTA1.1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 187 bits (475), Expect = 3e-44, Method: Composition-based stats.
Identities = 118/328 (35%), Positives = 161/328 (49%), Gaps = 61/328 (18%)
Query: 711 PIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMR 770
PI+ + DP L K D N KI SWNV+G+RAW + K+G ++R
Sbjct: 35 PIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDWVR 78
Query: 771 QHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHG 825
+ D ++ C+QE +C + LP PE H +W ++GY+GVA+L KT+P+ VT+G
Sbjct: 79 KEDPDILCLQETKCAEKALPADITGMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYG 138
Query: 826 FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYL 885
G EH + GRV+T E+ F+L
Sbjct: 139 I---------------GKEEHDKE-----------------------GRVITAEFPDFFL 160
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ R +L L+ KP+VL GDLNVAH ID+ P N
Sbjct: 161 VTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNR 220
Query: 946 GKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLIS 1003
+GFT +ER F+ L+ GF D R LYP+ YT+W Y + SK GWRLDYF++S
Sbjct: 221 KNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLS 280
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
L L D +I GSDH P L+L
Sbjct: 281 SALLPGLCDSKIRNTAMGSDHCPITLFL 308
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G ++ EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLDIE---------------EHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEDAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 163/300 (54%), Gaps = 51/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + + + ++ + ++FC+QEI+ ++ EG
Sbjct: 2 KLISWNVNGLRA-----------VIAKGEFLEYLEESSADIFCLQEIKLQEGQIDLNLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ SK +P+ VT+G ++ EH
Sbjct: 51 YYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLDIE---------------EHDQ------- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E+E FY++ +Y P +K L L ++ W R ++K
Sbjct: 89 ----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS+ L+ GF+D +R+LYP
Sbjct: 133 RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSSILEEGFIDTYRYLYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHINF 252
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLVSWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALIYKDILGSDHCP 244
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F +F R+ D ++FCIQE + ++ G
Sbjct: 3 KMISWNVNGLRA--CVGKGFLDVF----------RKLDADIFCIQESKLQAGQIDLDIPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ SK +P+ V +G + H H
Sbjct: 51 YYQYWSYADKKGYSGTALFSKEEPISVVYGLGIDA----HDH------------------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE +Y++ Y P ++ +L+ L ++ W +LK
Sbjct: 89 ----------------EGRVITAEYEDYYVLTCYTPNSQNELARLPYRMEWEDAFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER FS LD GF+D +RH YP
Sbjct: 133 KLEEKKPVIFCGDLNVAHREIDLKNPRTNRKNAGFTDEERGKFSALLDAGFIDTYRHFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y + K GWR+DYF +S+ L+ L IH ++ GSDH P
Sbjct: 193 DTEGVYSWWSYRFKAREKNAGWRIDYFCVSESLEDRLVSASIHTEIMGSDHCP 245
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D ++FCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADIFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 158/301 (52%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD D +V C+QE + +L PE
Sbjct: 2 MKLISWNVNGLRA------------VMKKDFEGIFEAMDTDVLCLQETKMQAGQLDYDPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+A++ ++GY+G AV ++ KP+ VT+G +EH ++
Sbjct: 50 GYYAYYNYAEKKGYSGTAVYTRIKPLNVTYGIQ---------------EDEHNTE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ F+LV VY P ++ +L + ++ W R +L
Sbjct: 90 ------------------GRVITCEYDDFFLVCVYTPNSQPELKRIDYRMQWEDDFREYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVVL GDLNVAH ID+ P N GF+ QER F+N LD GF+D R L+
Sbjct: 132 KMLDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQEREQFTNLLDAGFIDSFRELH 191
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y + S+ GWR+DYF++S++L++ + +I V GSDH P ++ LN
Sbjct: 192 PNAIDRYSWWSYRANARSRNTGWRIDYFVVSERLRNAIEAADILDQVLGSDHCPVMIKLN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 187 bits (475), Expect = 3e-44, Method: Composition-based stats.
Identities = 118/328 (35%), Positives = 161/328 (49%), Gaps = 61/328 (18%)
Query: 711 PIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMR 770
PI+ + DP L K D N KI SWNV+G+RAW + K+G ++R
Sbjct: 35 PIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDWVR 78
Query: 771 QHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHG 825
+ D ++ C+QE +C + LP PE H +W ++GY+GVA+L KT+P+ VT+G
Sbjct: 79 KEDPDILCLQETKCAEKALPADITAMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYG 138
Query: 826 FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYL 885
G EH + GRV+T E+ F+L
Sbjct: 139 I---------------GKEEHDKE-----------------------GRVITAEFPDFFL 160
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ R +L L+ KP+VL GDLNVAH ID+ P N
Sbjct: 161 VTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNR 220
Query: 946 GKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLIS 1003
+GFT +ER F+ L+ GF D R LYP+ YT+W Y + SK GWRLDYF++S
Sbjct: 221 KNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLS 280
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
L L D +I GSDH P L+L
Sbjct: 281 SALLPGLCDSKIRNTAMGSDHCPITLFL 308
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNIFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +K EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIK---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS L+ ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCP 244
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 154/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F + +VFCIQE + E+ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVNADVFCIQESKMQQEQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +M+ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINME---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W + LK
Sbjct: 89 -----------------GRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N + YT+W Y + K GWR+DYFL S LK+ L D I+ ++ GSDH P L L
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKNILGSDHCPVGLEL 249
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG RA + K F IF +GF +V C+QE + + P G
Sbjct: 2 KLISWNVNGFRA--ILGKGFADIF----EGFG------ADVVCLQETKMQPGQAEFSPPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W+ ++GY+G AV ++ +P+ V +G G EH S
Sbjct: 50 YHQYWYSAEKKGYSGTAVFTRMEPLSVRYGI---------------GKEEH--------S 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H +GR +T+E+EQF+LVNVY P ++ +L+ L ++ W LR +L
Sbjct: 87 H---------------EGRAITLEFEQFFLVNVYTPNSQNELARLPYRMQWEDDLRAYLC 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPVV GDLNVAH ID+ P N+ +GF+ +ER ++ L GF+D R LYP
Sbjct: 132 ALDTEKPVVYCGDLNVAHREIDLKNPKQNIHSAGFSYEERQKMTDLLMSGFVDTFRALYP 191
Query: 976 NHRI-YTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W Y+ R + GWR+DYF++S++L+ + D I+ DV GSDH P L L++
Sbjct: 192 DAAGRYTWWSYFRRARETNAGWRIDYFIVSERLREKIGDALIYSDVYGSDHCPVGLVLDV 251
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + ++ +G
Sbjct: 2 KLISWNVNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQDQNTFEFKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+GV +K +P+ V++G +++ EH +
Sbjct: 50 YFDFWNCAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E FYLVNVY P +++ LS LS ++ W R LK
Sbjct: 89 -----------------GRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAHN ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 ALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N + YT+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P
Sbjct: 192 NKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALIYKDILGSDHCP 244
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 187 bits (474), Expect = 4e-44, Method: Composition-based stats.
Identities = 105/293 (35%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F Q D ++FCIQE + +L EG
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLDFFHQADADIFCIQESKMQEGQLQLELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +P+ VT+G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKEEPLSVTYGM---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+E+ +FY VY P ++ +L+ L ++ W + ++K
Sbjct: 89 -----------------GRLITLEFPEFYFATVYTPNSQNELARLDYRMQWETDFLAYMK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F LD GF+D R+ YP
Sbjct: 132 KLEEKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFGELLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y R K GWR+DYF +S+ L+ L+D +I + GSDH P
Sbjct: 192 DMEGIYSWWSYRFRAREKNAGWRIDYFCVSESLRERLADAKILTYIFGSDHCP 244
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 158/301 (52%), Gaps = 55/301 (18%)
Query: 736 KIGSWNVNGIRAWSQVNK-LFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNG+RA VNK FT F Q D +VFC+QE + +L E
Sbjct: 2 KLVSWNVNGLRA--CVNKGCFTDYF----------EQIDADVFCVQETKMQEGQLSLELG 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ H++W ++GY+G AV SK +P+ V +G D E+
Sbjct: 50 DNIHSYWNYALKKGYSGTAVFSKIEPISVRYGLE--------------------EDEEA- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GR++T+E+ FYLVNVY P AK DLS L +L W R +
Sbjct: 89 ------------------EGRILTLEFASFYLVNVYTPNAKRDLSRLPYRLEWEDRFRKY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ L+E KPV++ GDLNVAH ID+ +N+G SGFT +ER F+ L GFLD R L
Sbjct: 131 IVQLDEKKPVIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNELLGAGFLDSFREL 190
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ YT+W + + + GWR+DYFLIS++L+ HL + I + GSDH P + L
Sbjct: 191 YPDRTDAYTWWSFMPKVRERNIGWRIDYFLISEKLRPHLKEAGIDSHIMGSDHCPVYVEL 250
Query: 1032 N 1032
+
Sbjct: 251 D 251
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G ++ EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLDIE---------------EHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEDAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINTEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 DYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P AK L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEGFYIITLYTPNAKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K+ + D +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKNQIKDAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 154/298 (51%), Gaps = 54/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNG+RA VNK F F + D ++FC+QE + ++ E
Sbjct: 1 MKLISWNVNGLRA--CVNKGFIDYF----------KASDADIFCVQETKLQEGQICLELG 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G AV ++ +P+ V +G D E
Sbjct: 49 ESYRQYWNYAEKKGYSGTAVFTRIEPLSVRYGME--------------------EDRE-- 86
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
PE GR++T+E+E FYLV VY P AK DLS L +L W R +
Sbjct: 87 ---PE--------------GRMITLEFESFYLVTVYTPNAKRDLSRLEYRLEWEERFRRY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+ L+ KPV++ GDLNVAH +D+ +N G SGFT +ER+ + LD GF D RH
Sbjct: 130 LQELDARKPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDKMTRLLDAGFTDTFRHR 189
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YP+ YT+W + + + GWR+DYFL+S +LK ++ D EI + GSDH P IL
Sbjct: 190 YPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLKEYIKDAEIDAAITGSDHCPVIL 247
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 163/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F +Q + ++FC+QE + ++ +G
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDFFHEQ----------NADIFCLQETKLQEGQIELELDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW ++GY+G AV +K KP+ V +G VG ++ES
Sbjct: 50 YHQFWNYALKKGYSGTAVFTKQKPISVRYG----VG-----------------ELESE-- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR++T+E++ FYLVNVY AK DLS L +L W L+ +L
Sbjct: 87 ---------------DEGRIITLEFDSFYLVNVYTINAKRDLSRLPERLEWEDALKEYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPVV GDLNVAH +D+ +N G SGFT++ER + L+ GF+D R+LYP
Sbjct: 132 DLDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESGFIDSFRYLYP 191
Query: 976 NHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+T+W Y D ++ GWR+DYF++S QLK +++ I+ +V GSDH P L L++
Sbjct: 192 ERTDAFTWWSYMRDVRARNIGWRIDYFIVSTQLKEKINEASIYAEVLGSDHCPIGLELDI 251
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 156/297 (52%), Gaps = 52/297 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA V K F F + D ++FCIQE + ++ +
Sbjct: 1 MKLVSWNVNGIRA--CVKKGFLDYF----------NEIDADIFCIQESKLQEGQINLELD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W R+GY+G AV +K KP+ V +G + N+
Sbjct: 49 GYHQYWNYAIRKGYSGTAVFTKKKPLHVRYGLG-------------KEDNQ--------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
++GR++T+E+ +F+LVNVY P +K DL+ L +L W L +L
Sbjct: 87 ----------------EEGRIITLEFNEFFLVNVYTPNSKRDLTRLDYRLEWEDELYSYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+E KPV+ GDLNVAH ID+ TN G SGFT QER + LD GF+D RH +
Sbjct: 131 RELDEEKPVIYCGDLNVAHQEIDLKNHKTNHGNSGFTAQERGKMTRLLDSGFVDTLRHFH 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ IY++W Y + GWR+DYF++SK+L +L + ++H V GSDH P L
Sbjct: 191 PDKEGIYSWWSYMKTIRERNIGWRIDYFIVSKRLVPYLKNSDVHSLVMGSDHCPVAL 247
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K FT F ++ D ++FCIQE + ++ EG
Sbjct: 3 KMISWNVNGIRA--VMGKGFTD----------FFQKEDADIFCIQETKVQEGQIEIPFEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVAV +K KP+ V++G G EH +
Sbjct: 51 YYKYWNYAEKKGYSGVAVFTKIKPITVSYGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++++Y+V VY P ++ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITLEFDEYYVVTVYTPNSQRGLTRLHYRMKWEDDFLSYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL KPV++ GDLNVAH ID+ P +N +GFT +ER+ F ++++ GF+D R+ YP
Sbjct: 133 SLERYKPVIVCGDLNVAHKEIDLKNPQSNKKNAGFTEEERSKFDSYVNNGFIDTFRYFYP 192
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ +YT+W Y ++ GWR+DYF++S+++K L D ++ ++ GSDH P + L+
Sbjct: 193 DRIGVYTWWSYMFNSRQNNAGWRIDYFIVSERIKDRLKDALVYSEITGSDHCPVGILLD 251
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 158/305 (51%), Gaps = 46/305 (15%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K+ + K ++ + D + FC+QE + +L G
Sbjct: 2 KFVSWNVNGLRACVKP-KVDAEGNVISKGFEAYFNELDADFFCLQETKMQAGQLDLQFNG 60
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W R+GY+G A+ +K +P+ V G G EH
Sbjct: 61 YRSYWNYAERKGYSGTAIYTKHEPMNVACGM---------------GIEEHD-------- 97
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL------SMLSVKLLWNSF 909
++GRV+T+EY +FYLVNVY P ++E L L ++ W
Sbjct: 98 ---------------NEGRVITLEYPEFYLVNVYTPNSQESLPGEVKPKRLGYRMKWEED 142
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
R ++K LNE KPV++ GDLNVAH ID+ TN +GFT +ER + LD GF+D
Sbjct: 143 FRAYIKRLNETKPVIVCGDLNVAHQEIDIKNAKTNRNNAGFTDEEREKMTILLDNGFIDT 202
Query: 970 HRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +YP IY++W Y R + GWR+DYFL+S++L++ + D IH ++ GSDH P
Sbjct: 203 FRTMYPEQVIYSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIHTEIYGSDHCPVE 262
Query: 1029 LYLNL 1033
L LNL
Sbjct: 263 LELNL 267
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 159/295 (53%), Gaps = 54/295 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPECP 793
K+ SWNVNG+RA + K F + F ++ D ++FCIQE + + L +
Sbjct: 3 KLVSWNVNGLRA--CIGKGF----------WDFFKEVDSDIFCIQETKLQEGQVELEQEL 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGY +W ++GY+G A+ +K KPV + G G EH
Sbjct: 51 EGYEQYWNYAVKKGYSGTAIFTKIKPVSSSCGI---------------GIEEHD------ 89
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
++GRV+T+E++Q++LVNVY P +K +L L ++ W R +
Sbjct: 90 -----------------NEGRVITLEFDQYFLVNVYTPNSKRELERLEYRMKWEDDFRIY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
LK L E KPV++ GD+NVAH ID+ P +N +GFT++ER FS L+ GF+D +R L
Sbjct: 133 LKQLEETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSELLEQGFVDSYRTL 192
Query: 974 YPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP+ YT+W Y + + GWR+DYF +S+ LK+ + + +I+ ++ GSDH P
Sbjct: 193 YPDKTGAYTWWSYMFKARERNVGWRIDYFCVSEVLKNIIEEADIYSEIMGSDHCP 247
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK +P+RV +G G EH +
Sbjct: 50 GYHVYWNYAVKKGYSGTAVFSKQEPLRVMYGI---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ +Y P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTIYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ G++D RH+Y
Sbjct: 132 LELDKKKPVILCGDLNVAHQEIDLKNPKANRKNAGFSDQERGAFSRLLEAGYVDSFRHVY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDAGISKDVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 251
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 158/301 (52%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD D +V C+QE + +L PE
Sbjct: 1 MKLISWNVNGLRA------------VMKKDFEGIFEAMDTDVLCLQETKMQAGQLDYDPE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+A++ ++GY+G AV ++ KP+ VT+G +EH ++
Sbjct: 49 GYYAYYNYAEKKGYSGTAVYTRIKPLNVTYGIQ---------------EDEHNTE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ F+LV VY P ++ +L + ++ W R +L
Sbjct: 89 ------------------GRVITCEYDDFFLVCVYTPNSQPELKRIDYRMQWEDDFREYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVVL GDLNVAH ID+ P N GF+ QER F+N LD GF+D R L+
Sbjct: 131 KMLDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQEREQFTNLLDAGFIDSFRELH 190
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y + S+ GWR+DYF++S++L++ + +I V GSDH P ++ LN
Sbjct: 191 PNAIDRYSWWSYRANARSRNIGWRIDYFVVSERLRNAIEAADILDQVLGSDHCPVMIKLN 250
Query: 1033 L 1033
Sbjct: 251 F 251
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 186 bits (473), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA + K F F + D ++FC+QE +C ++ G
Sbjct: 2 KFISWNVNGIRA--CITKGFEERF----------HELDADIFCLQETKCQQGQVKLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G A+ +K +P+ +G G EH +
Sbjct: 50 YHQYWNYANRRGYSGTAIFTKREPLSAAYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++++Y V VY P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEFDEYYFVTVYTPNSQSELRRLEYRMKWEEDFLAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 KLQEKKPVICCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTRALESGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y R K GWR+DYFL+S LK L D +IHG++ GSDH P L ++L
Sbjct: 192 DKEGVYSWWSYRFRAREKNAGWRIDYFLVSPSLKEKLQDAKIHGEIMGSDHCPVELDIDL 251
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 186 bits (472), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 157/294 (53%), Gaps = 53/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPISVMYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCVLEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P Y++W Y +K GWRLDYF+IS++LK ++D +I+ +V GSDH P
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVTGSDHCP 245
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/299 (37%), Positives = 154/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F + +VFCIQE + E+
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFF----------ETVNADVFCIQESKMQREQATFDFPN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GVA+ SKTKP+ V + DM G +
Sbjct: 50 YEEYWNSAEKKGYSGVAIFSKTKPLSVAY------------------------DM--GIA 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++ EY+ FYLVNVY P +K +L LS ++ W R +LK
Sbjct: 84 HHD------------KEGRIICAEYKDFYLVNVYTPNSKRELERLSYRMEWEDDFRAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ P TN +GFT +ER + LD GF D RH YP
Sbjct: 132 NLEKTKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLDSGFTDTFRHFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
Y++W Y + + GWR+DYFL SK L S L D +I+ +V GSDH P L +N
Sbjct: 192 TLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPEVFGSDHCPVGLEIN 250
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 165/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E F+++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFHMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCVLEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ + Y++W Y +K GWRLDYF++S+++K+ +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQKGAYSWWSYRMGARAKNIGWRLDYFVVSERMKNQITEAKINSEVMGSDHCPVELHVN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F ++ + +VFC+QE +C ++ G
Sbjct: 2 KLISWNVNGIRA--CITKGFEDRF----------KELNADVFCLQETKCQQGQVELELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G AV +K +P+ V +G ++ +
Sbjct: 50 YHQYWNYANRRGYSGTAVFTKKEPLSVVNGIGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E+FY V VY P ++ +L L ++ W +L
Sbjct: 85 HDK-------------EGRVITLEFEEFYFVTVYTPNSQSELRRLEYRMEWERDFLAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GD+NVAH ID+ P TN +GFT +ER FS L+ GF+D R+ YP
Sbjct: 132 KLQEKKPVICCGDMNVAHQEIDLKNPKTNRKNAGFTDEERACFSRMLESGFVDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF++S LK L D IH ++ GSDH P
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDYFIVSPSLKDRLQDASIHTEIMGSDHCP 244
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 70/351 (19%)
Query: 708 EEVPIIDFNDPFRILEHKRRQ-DQYPWN---------------FKIGSWNVNGIRAWSQV 751
E + + ++P+ +L HK+ Q D +N K+ +WNVNG+RA ++
Sbjct: 245 EMISSLSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRALLKL 304
Query: 752 NKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFWFPG-TR 805
F+++ L Q++ F ++ C+QE + ++ + E +GY H+FW ++
Sbjct: 305 ES-FSALQLAQRENF--------DILCLQETKLQVKDVEEIKNTLIDGYDHSFWSCSVSK 355
Query: 806 QGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYA 865
GY+G A++S+ KP+ V +G + GS+ DME
Sbjct: 356 LGYSGTAIISRIKPLSVRYGTGLS------------GSDH---DME-------------- 386
Query: 866 DASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVV 924
GR++T E++ FYL+N Y P + + L LS ++ W+ L H+K L + KPVV
Sbjct: 387 -------GRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVV 439
Query: 925 LAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYW 983
L GDLN AH ID+ P N +GFTI+ER F +NFLD GF+D R +P YTYW
Sbjct: 440 LTGDLNCAHEEIDIFNPAGNKRNAGFTIEERQSFGANFLDKGFVDTFRKQHPGVVGYTYW 499
Query: 984 PYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y K +GWRLDYFL+S+ + +++ D I D+ GSDH P L L L
Sbjct: 500 GYRHGGRKTNRGWRLDYFLVSESIAANVHDSYILPDINGSDHCPIGLILKL 550
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 162/332 (48%), Gaps = 61/332 (18%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E PI+ + DP + K +D N KI SWNV+G+RAW + K+G +
Sbjct: 33 EAPIM-YEDPPDKMTSKDGRDA---NMKITSWNVDGLRAWVK------------KNGLDW 76
Query: 769 MRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVT 823
+R+ +V C+QE +C + LP PE H +W +QGY+GVA+L KT+P++VT
Sbjct: 77 VREEAPDVLCLQETKCSEKALPAEITSMPEYPHKYWAASDEKQGYSGVAMLCKTEPLKVT 136
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G EH + GRV+T E+ F
Sbjct: 137 YGI---------------GKEEHDKE-----------------------GRVITAEFPNF 158
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLV Y P + + L L + W+ R +L L+ KP+VL GDLNVAH ID+ P
Sbjct: 159 YLVTTYVPNSSKGLVRLDYRKTWDEDFRAYLSELDMQKPLVLCGDLNVAHQEIDLKNPKG 218
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFL 1001
N +GFT++ER F L GF D R LYP YT+W Y + K GWRLDYFL
Sbjct: 219 NKKNAGFTVEEREGFGQLLGSGFADSFRELYPEQANAYTFWTYMMNSRGKNVGWRLDYFL 278
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+S L L D +I GSDH P L++ +
Sbjct: 279 LSSSLLPGLCDSKIRSKALGSDHCPITLHIAV 310
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 162/300 (54%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +GF G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGF---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 251
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 154/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK F + D ++FCIQE + ++ G
Sbjct: 6 KLISWNVNGLRA------------CIQKGFLDFFHETDADIFCIQESKLQEGQIDLPLPG 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K +P+ VT+G G EH
Sbjct: 54 YFSYWNYAKKKGYSGTAIFTKKEPLNVTYGI---------------GIEEHDK------- 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY FY+V Y P ++ +L+ L ++ W R +LK
Sbjct: 92 ----------------EGRVITLEYPDFYMVTCYTPNSQNELARLPYRMQWEDDFRAYLK 135
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH ID+ P TN +GF+ +ER + LD GF D R+ YP
Sbjct: 136 RLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREKMTKLLDAGFTDTFRYFYP 195
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +IY++W Y R K GWR+DYF+ SK++ L+ +IH DV GSDH P L ++L
Sbjct: 196 DTEQIYSWWSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIHTDVFGSDHCPVELDIDL 255
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 150/292 (51%), Gaps = 52/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG RA + K F F + D ++FCIQE + ++ PEG
Sbjct: 2 KLISWNVNGFRA--CLTKGFGDFFAEA----------DADIFCIQETKMQPDQADFSPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G AV +K +P+ VT G + EH
Sbjct: 50 YHKYFHSAIKKGYSGTAVYTKKEPLSVTFGIN----------------GEH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GRV+T EYE FY V Y P A+ +L + ++ + +RG+L
Sbjct: 85 --------------TDEGRVITCEYEDFYFVGCYVPNAQNELKRIDYRMEFEDAMRGYLS 130
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV+ GDLNVAHN ID+ P +N+G +GF+ +ER F+ L GF D +R LYP
Sbjct: 131 ELDKKKPVIYCGDLNVAHNEIDLKNPKSNVGNAGFSDEERGKFTELLAAGFSDSYRSLYP 190
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYF++S + + D +I DV GSDH P
Sbjct: 191 EKIEYSWWSYRFKAREKNIGWRIDYFVVSDRFMPRVKDSQILTDVTGSDHCP 242
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESSADIFCLQEIKLQEGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G ++ EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLDIE---------------EHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER FS L+ GF D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFTDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PDQESAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 152/292 (52%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F + F D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRA--CVKKDFEASF----------HHLDADFFCLQETKMQAGQLDLQFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ VT+G G +EH +
Sbjct: 50 YQSYWNYADKKGYSGTAIYTKHTPLNVTYGL---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + F+L+ VY P ++++L L ++ W R ++
Sbjct: 89 -----------------GRVITMEMDDFFLITVYVPNSQDELRRLDYRMQWEDDFRAYVM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ IKPV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF+D RHLYP
Sbjct: 132 QLDAIKPVIICGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTILLNNGFVDTFRHLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++LK L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNAGWRIDYFLISERLKERLVDAKIHTEILGSDHCP 243
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNGIRA QK F + D ++FCIQE + +L
Sbjct: 2 RLVSWNVNGIRA------------CMQKGFMDFFNEIDADIFCIQETKMQPGQLEIETPL 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH + ++GY+G V SK +P+ V++G ++ H H
Sbjct: 50 YHQYMNSAEKKGYSGTMVFSKQEPIHVSYGLGIEE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE FYLV VY P +K+ L L ++ W R +L
Sbjct: 88 ----------------EGRVITCEYEDFYLVCVYTPNSKDGLLRLDYRMEWEDAFRTYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE K V++ GDLNVAH ID+ P TN +GFT +ERN S LD GF+D +R+LYP
Sbjct: 132 KLNETKSVLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERNKMSVLLDSGFIDSYRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y + K GWR+DYFL+S+ K + + +IH D+ GSDH P
Sbjct: 192 EQEGVYSWWSYRFKAREKNAGWRIDYFLVSEDAKDGIREAKIHTDIYGSDHCP 244
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 152/292 (52%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F + F + D + FC+QE + +L G
Sbjct: 2 KLISWNVNGLRA--CVGKDFETSF----------KSLDADFFCLQETKMQAGQLDLAFNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ VT+G G +EH +
Sbjct: 50 YQSYWNYADKKGYSGTAIFTKQTPLNVTYGM---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E F+LV VY P ++++L L ++ W + +L
Sbjct: 89 -----------------GRVITLETENFFLVTVYTPNSQDELRRLEYRMRWEDDFKAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 ALDARKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTELLAGGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R + GWR+DYFLIS++LK ++D +IH D+ GSDH P
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIHTDIYGSDHCP 243
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 186 bits (471), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 153/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA FL+ ++++ D ++FCIQE + ++ G
Sbjct: 36 KMISWNVNGLRA------CLGKGFLE------YLKESDADIFCIQESKLQEGQVDLELPG 83
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ VT+G ++ H H
Sbjct: 84 YHQYWNYAEKKGYSGTAMFTKEEPIAVTYGLGIEE----HDH------------------ 121
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E+ ++Y+V Y P +++ L L ++ W R +LK
Sbjct: 122 ----------------EGRVITAEFPEYYVVTCYTPNSQDGLKRLDYRMQWEDAFRAYLK 165
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+ GDLNVAH ID+ P TN +GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 166 ELETKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKFTELLEAGFVDTFRYFYP 225
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L D +IH +V GSDH P
Sbjct: 226 DQEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVDAKIHTEVMGSDHCP 278
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 156/294 (53%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F + D ++FC+QE + E++P +
Sbjct: 2 KLISWNVNGIRA-------------CVKNGFMDFFLKEDADIFCLQETKIQKEQIPFTLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ + +G G EH
Sbjct: 49 GYYQYWNFAQKKGYSGTAIFSKIEPLNIVYGM---------------GKEEHDK------ 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E+FY+V VYAP ++ L+ L ++ W ++
Sbjct: 88 -----------------EGRLITLEFEKFYVVTVYAPNSQRGLARLDYRMKWEDDFLNYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GDLNVAH +D+ P TN +GFT +ER+ F ++ GF+D R Y
Sbjct: 131 IGLEKCKPVIVCGDLNVAHKEMDLKNPSTNKKNAGFTPEERSKFDEVINKGFVDTFRFFY 190
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ + YT+W Y ++ + GWR+DYF +S +LKS L + I+ DV GSDH P
Sbjct: 191 PDKTQAYTWWSYMFNARANNAGWRIDYFCVSAELKSQLRNAVIYQDVLGSDHCP 244
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 186 bits (471), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQGGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVAYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEEKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRVLEEGFVDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K ++D +I+ +V GSDH P L+++
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKEQITDAKINSEVMGSDHCPVELHID 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D + FCIQE + +L +G
Sbjct: 2 KLISWNVNGLRA--CVTKGFKETF----------KSFDADFFCIQETKMQEGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G A+ +KTKP+ VT+G + H H
Sbjct: 50 YESFWNYADKKGYSGTAIYAKTKPLNVTYGIDIDD----HNH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ F+LV VY P ++ +L L+ +++W + +L
Sbjct: 88 ----------------EGRVITLEYDNFFLVTVYTPNSQNELKRLNYRMIWEKDFQTYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KP+++ GD+NVAH ID+ P TN +GFT +ER + L GF D R YP
Sbjct: 132 KLDKRKPIIVCGDMNVAHQEIDIKNPKTNHKSAGFTDEEREKMTQLLSNGFTDTFRFKYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y R K GWR+DYFL+S ++K + D +IH D+ GSDH P L + L
Sbjct: 192 EQITYSWWSYRFRAREKNAGWRIDYFLVSDRIKEKVLDAKIHTDIMGSDHCPVELTIEL 250
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum DSM
5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum DSM
5476]
Length = 253
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 151/298 (50%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F ++ D +VFC+QE + + EG
Sbjct: 2 KLISWNVNGLRA--CLNKGF----------LDFFQEADADVFCVQETKMQQGQAELALEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+G AV ++ PV V +G +
Sbjct: 50 YEQFWCSAEKKGYSGTAVFTRIPPVSVAYGIGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GRV+TVE+E+F L+NVY P A+ L+ + ++ W R +L
Sbjct: 83 -PEFDT----------EGRVITVEFEKFTLINVYTPNAQRGLTRIDFRMQWEDAFRVYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVV+ GDLNVAHN ID+ TN G +GF+ +ER + L G D R+LYP
Sbjct: 132 RLQESKPVVVCGDLNVAHNEIDLKNYKTNRGNAGFSDEERGKMTELLQSGLTDSFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y ++ + GWR+DYFL S LK + D I+ +V GSDH P L+L
Sbjct: 192 EKTGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQIEDSVIYSEVLGSDHCPIGLFL 249
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 185 bits (470), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 151/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D + FC+QE + +L G
Sbjct: 2 KLISWNVNGLRA--CVGKDFEQQF----------KALDADFFCLQETKMQAGQLDISFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G M +EH +
Sbjct: 50 YTSYWNYADKKGYSGTAIFTKHKPLDVTYGIGM---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P +++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDGLRRLDYRMKWEKDFQNYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPVV+ GD+NVAH ID+ P TN +GFT +ER + LD GF+D R LYP
Sbjct: 132 WLDEKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQLLDSGFIDTFRSLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R + GWR+DYFLIS++L+ L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMGSDHCP 243
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 185 bits (470), Expect = 1e-43, Method: Composition-based stats.
Identities = 107/299 (35%), Positives = 156/299 (52%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRAC--VGKDFEQQF----------KALDADFFCLQETKMQAGQLDLQFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G A+ +K P+ V++G G +EH +
Sbjct: 50 YQSFWNYAEKKGYSGTAIYAKQAPLAVSYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EYE F+LV VY P ++++L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYESFFLVTVYTPNSQDELRRLDYRMQWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 RLDEQKPVIVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERAKMTQLLGHGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y R K GWR+DYFLIS++L+ L+D +IH D+ GSDH P + L+L
Sbjct: 192 EQQTYSWWSYRFRAREKNTGWRIDYFLISERLRPQLTDAKIHTDIMGSDHCPVEVDLDL 250
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 156/294 (53%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F ++ D ++FCIQE + ++ G
Sbjct: 3 KLISWNVNGLRA--CVGKGFLDYF----------KEVDADIFCIQESKLSEGQIELELSG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G +G H H
Sbjct: 51 YHQYWNYAEKKGYSGTAMFTKEEPLSVAYG----IGIEEHDH------------------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW-NSFLRGHL 914
+GRV+T E+ +Y+V Y P +K+ L+ L +++W ++FLR +L
Sbjct: 89 ----------------EGRVITAEFSDYYVVTCYTPNSKDGLARLPYRMVWEDAFLR-YL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L E KPV+ GDLNVAH ID+ P TN +GFT +ER F++ LD GF+D R Y
Sbjct: 132 KGLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLDAGFIDTFRWFY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ IY++W Y + SK GWR+DYF +S+ LK L +IH +V GSDH P
Sbjct: 192 PDREEIYSWWSYRFSARSKNAGWRIDYFCVSEALKDRLVSADIHTEVLGSDHCP 245
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 158/298 (53%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F F + + +VF +QEI+ +L EG
Sbjct: 2 KLVSWNVNGLRA--VIKKGFVDSF----------NEINADVFALQEIKLSEGQLDFELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ ++ +P+ V++G M+ EH ++
Sbjct: 50 YKMYYNYAQRKGYSGTAIFTRIEPISVSYGIGME---------------EHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+E+FY V Y P +K L L +++W R +L
Sbjct: 89 -----------------GRVITAEFEKFYFVTCYTPNSKRGLERLEYRMVWEDVFRNYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVVL GDLNVAH ID+A P TN +GFT +ER+ F+ L G++D R+ YP
Sbjct: 132 KLRETKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELLKSGYIDTFRYFYP 191
Query: 976 NHRI-YTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ + Y++W + + + GWR+DYF++S++LK +LSD +IH V GSDH P L L
Sbjct: 192 DRKDEYSWWSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIHQSVMGSDHCPVELVL 249
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 157/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ + ++ C+QE + ++ PE
Sbjct: 1 MKLMSWNVNGLRA-----------VMKKIDINTYVQETEADILCLQETKVQDGQVSLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA+W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHAYWNYAVKKGYSGTAVFSKEKPLHVLYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S I D+ GSDH P
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA QK F+ + ++FC+QE + ++ E
Sbjct: 2 RLVSWNVNGLRA------------CMQKGFKDFLLKSGADIFCVQETKMQPDQADFVFEN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHAFW ++GY+GV LSK+ P+ V +G ++ EH ++
Sbjct: 50 YHAFWNSAQKKGYSGVLTLSKSAPLDVRYGLGLE---------------EHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EYE FYLVNVY P ++ L L +L W S R L+
Sbjct: 89 -----------------GRVITCEYEYFYLVNVYTPNSQRGLLRLPYRLQWESVFREFLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L K V++ GDLNVAH ID+ P +N +GF+ ERN F L LG +D +RH YP
Sbjct: 132 NLASHKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAFGQLLQLGLIDTYRHFYP 191
Query: 976 NH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +YT+W Y ++ ++ GWR+DYFL S+ L+S L D I+ + GSDH P
Sbjct: 192 DKTEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKDACIYAHILGSDHCP 244
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 161/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKEEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRVYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K ++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K F IF + D + FC+QE + +L EG
Sbjct: 4 KLISWNVNGLRA--CCDKGFREIF----------NELDADFFCLQETKMQEGQLDLAFEG 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ +P+ VT+G G +EH +
Sbjct: 52 YTSYWNYAEKKGYSGTAIFTRHQPLSVTYGL---------------GIDEHDHE------ 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E FYLV VY P +++ L L ++ W R +L
Sbjct: 91 -----------------GRVITLEMENFYLVTVYTPNSQDGLKRLDYRMTWEEDFRKYLL 133
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P TN +GFT QER F LD GF+D RH YP
Sbjct: 134 QLDRQKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLLLDAGFIDTFRHFYP 193
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL S ++ L D +IH ++ GSDH P
Sbjct: 194 TQENIYSWWSYRFKAREKNAGWRIDYFLASSRIADKLQDAKIHTEIFGSDHCP 246
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 154/297 (51%), Gaps = 56/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
K SWNVNG+R+ + T FL+ ++ + +V +QE++ E+ P +
Sbjct: 2 KFVSWNVNGVRS------VLTKGFLE------YLEKESPDVIGLQEVKATEEQFPAGLDL 49
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GY +W R+GY+G AV SK KP+ V +G+ M EH ++
Sbjct: 50 QSLGYQVYWNAAERKGYSGTAVFSKIKPLSVRYGYGMA---------------EHDTE-- 92
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GR++T+E+E+++ V VY P AK +L L + LW+S
Sbjct: 93 ---------------------GRIITLEFEEYFFVTVYTPNAKRELERLEYRQLWDSLFF 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+LK L KPV+++GDLNVAH ID++ P N G +GFT +ER+ F FL GF+D R
Sbjct: 132 DYLKRLEAEKPVIVSGDLNVAHKDIDLSNPKANRGSAGFTDEERDGFGKFLSDGFIDTFR 191
Query: 972 HLYPNH-RIYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H YPN YT+W ++ + GWRLDYFLIS+ L+ L I ++ GSDH P
Sbjct: 192 HFYPNKTEEYTWWSNFFHARDRNIGWRLDYFLISEWLRERLKSAFIRQEIRGSDHCP 248
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 EYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRVYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 152/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K FT IF RQ D + FC+QE + +L +G
Sbjct: 3 KLISWNVNGLRA--CYDKGFTDIF----------RQLDADFFCLQETKMQAGQLDLQFDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G AV ++ +P+ V++G EH +
Sbjct: 51 YQSYWNYAEKKGYSGTAVFTRLQPISVSYGMD---------------RTEHDRE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+E E F+LVNVY P ++E L L ++ W LK
Sbjct: 90 -----------------GRIITLEMEDFFLVNVYTPNSQEGLKRLEYRMTWEDDFLHFLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVAH ID+ P TN +GFT +ER F+ L GF D R+ YP
Sbjct: 133 QLKTQKPVIVCGDLNVAHQEIDLKNPKTNRKNAGFTDEERYKFTQLLSAGFTDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N + IY++W Y + K GWR+DYFL S L L +IH ++ GSDH P L ++L
Sbjct: 193 NQKDIYSWWSYRFKAREKNAGWRIDYFLASASLNEKLCSAKIHTEIFGSDHCPVELEIDL 252
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCVQEIKLQEGQIDLNVE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLEYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E K VV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K ++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 164/331 (49%), Gaps = 61/331 (18%)
Query: 710 VPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM 769
PI+ + DP + + +D N KI SWNV+G+RAW + K G ++
Sbjct: 44 APIL-YEDPPDKMTSRDGRDA---NTKITSWNVDGLRAWVK------------KKGLDWV 87
Query: 770 RQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTH 824
R+ + +V C+QE +C + LP PE + +W ++GY+GVA+L KT+PV+VT+
Sbjct: 88 REENPDVLCLQETKCAEKSLPADITSMPEYPYKYWAGSDDKEGYSGVAMLCKTEPVKVTY 147
Query: 825 GFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFY 884
G G EH + GRV+T E+ F+
Sbjct: 148 GI---------------GKEEHDKE-----------------------GRVITAEFPGFF 169
Query: 885 LVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN 944
LV Y P + L L + W++ R +L L+ KPVVL GDLNVAH ID+ P N
Sbjct: 170 LVTAYVPNSGRGLVRLDYRKTWDADFRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPKGN 229
Query: 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLI 1002
+GFT +ER F L+ GF+D R LYP Y++W Y + K GWRLDYF++
Sbjct: 230 KKNAGFTAEEREGFGQLLEAGFVDSFRELYPEQSHAYSFWTYMMNARDKNVGWRLDYFVL 289
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
S L L D +I V+GSDH P L++ +
Sbjct: 290 SSSLLPGLCDSKIRNQVKGSDHCPITLHMAV 320
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 154/292 (52%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F + F ++ D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRA--CVGKDFENQF----------KELDADFFCLQETKMQEGQLDLQFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V++G G EH +
Sbjct: 50 YESYWNYAEKKGYSGTAIYTKHKPLNVSYGM---------------GVEEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY+QFYLV Y P ++ +L L ++ W R LK
Sbjct: 89 -----------------GRIITLEYDQFYLVTCYTPNSQTELKRLDYRMTWEDDFRKFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KPV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF D R+L+P
Sbjct: 132 SLDAKKPVIICGDLNVAHEEIDIKNPKTNRRNAGFTDEEREKMTVLLNDGFTDSFRYLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + K GWR+DYFL+S ++K +++ +IH ++ GSDH P
Sbjct: 192 DEVTYSWWSYRFKAREKNAGWRIDYFLVSDRIKEQITEAKIHTEIMGSDHCP 243
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 252
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 157/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ + ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETEADILCLQETKVQDGQVSLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA+W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHAYWNYAVKKGYSGTAVFSKEKPLHVFYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S I D+ GSDH P
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLEYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E K VV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y +K GWRLDYF++S+++K ++ +I+ +V GSDH P L++N
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F I +++ + ++FCIQE + ++ E
Sbjct: 3 KLISWNVNGLRA--CVKKGFLDI----------LKESNADIFCIQESKLQEGQIDLNLEE 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV SK KP+ ++ G G EH +
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKEKPLNISLGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FYLVNVY P +++ L+ + ++ W + R +L
Sbjct: 90 -----------------GRVLTLEFEEFYLVNVYTPNSQQKLARIDYRMAWENDFRDYLN 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ K V++ GDLNVAH ID+ P N +GF+ +ER F L GF+D +R+ YP
Sbjct: 133 ELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFDELLKSGFIDTYRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ + GWR+DYFL+SK + L D IH +EGSDH P
Sbjct: 193 DKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQIEGSDHCP 245
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 151/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA + K F F R+ D ++FC+QE +C ++ G
Sbjct: 2 KCISWNVNGIRA--CITKGFEDRF----------RELDADIFCLQETKCQQGQVELELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G AV +K +P+ V +G G EH +
Sbjct: 50 YHQYWNYANRRGYSGTAVFTKKEPISVKNGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+++FY V VY P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEFKEFYFVTVYTPNSQSELRRLEYRMEWERDFLAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D R+ YP
Sbjct: 132 KLQESKPVICCGDLNVAHEEIDLKNPKTNRKNAGFTDEERACFTKVLESGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y + K GWR+DYF+ S LK L IH ++ GSDH P L ++L
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDYFITSPSLKEKLQGAAIHTEIMGSDHCPIELDIDL 251
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQDGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ SK +P+ VT+G G EH +
Sbjct: 50 EYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRVYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN Y++W Y K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 PNQEGAYSWWSYRMGARVKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 184 bits (468), Expect = 2e-43, Method: Composition-based stats.
Identities = 107/293 (36%), Positives = 144/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D + C+QE + E+ G
Sbjct: 2 KLVSWNVNGLRA------------CLGKGFLDFFSAADADAVCLQETKMHQEQADLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+G AV ++ P+ VT+G M EH S+
Sbjct: 50 YQQFWNSAEKKGYSGTAVFTRVPPLNVTYGIGMA---------------EHDSE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+TVEYE FYLVN Y P A+ +L+ L ++ W R +L
Sbjct: 89 -----------------GRVITVEYEPFYLVNCYTPNAQRELARLEYRMKWEDDFRAYLM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KPVVL GDLNVAH ID+ P TN +GF+ +ER + L GF+D R LYP
Sbjct: 132 SLDAKKPVVLCGDLNVAHQEIDLKNPKTNRRNAGFSDEERAKMTELLAGGFVDTFRALYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y R GWR+DYF++S++L+ + D I DV GSDH P
Sbjct: 192 DVTGAYTWWSYLRRARDTNAGWRIDYFIVSERLRGAVHDSRIRADVMGSDHCP 244
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 155/308 (50%), Gaps = 57/308 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-- 790
+ K+ SWNV+GIRAW + K G ++ + + ++ C+QE +C ++LP
Sbjct: 57 YTLKVTSWNVDGIRAWVK------------KKGVEWVSEENPDILCLQETKCAEKQLPAD 104
Query: 791 --ECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+ E H +W ++GY+GVA+LSK KP+ V +G G EH
Sbjct: 105 IRDLAEYPHKYWACSEDKEGYSGVALLSKVKPLEVKYGI---------------GEEEHD 149
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+ GRV+T E+ ++LV Y P A L L + W+
Sbjct: 150 KE-----------------------GRVITAEFPSYFLVTSYVPNAGRGLVRLEYRQSWD 186
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
R +LK L KP++L GDLNVAH ID+ P N +GFT +ER F+ L+ GF+
Sbjct: 187 VAFRSYLKGLAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFTPEERAGFTKLLEEGFV 246
Query: 968 DVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D RHLYP+ YT+W Y + SK GWRLDYF++SK L+ + D +I GSDH
Sbjct: 247 DTFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTALGSDHC 306
Query: 1026 PQILYLNL 1033
P LY+ +
Sbjct: 307 PITLYIAV 314
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 155/308 (50%), Gaps = 57/308 (18%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-- 790
+ K+ SWNV+GIRAW + K G ++ + + ++ C+QE +C ++LP
Sbjct: 49 YTLKVTSWNVDGIRAWVK------------KKGVEWVSEENPDILCLQETKCAEKQLPAD 96
Query: 791 --ECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+ E H +W ++GY+GVA+LSK KP+ V +G G EH
Sbjct: 97 IRDLAEYPHKYWACSEDKEGYSGVALLSKVKPLEVKYGI---------------GEEEHD 141
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+ GRV+T E+ ++LV Y P A L L + W+
Sbjct: 142 KE-----------------------GRVITAEFPSYFLVTSYVPNAGRGLVRLEYRQSWD 178
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
R +LK L KP++L GDLNVAH ID+ P N +GFT +ER F+ L+ GF+
Sbjct: 179 VAFRSYLKGLAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFTPEERAGFTKLLEEGFV 238
Query: 968 DVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D RHLYP+ YT+W Y + SK GWRLDYF++SK L+ + D +I GSDH
Sbjct: 239 DTFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTALGSDHC 298
Query: 1026 PQILYLNL 1033
P LY+ +
Sbjct: 299 PITLYIAV 306
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEDFYMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 251
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 157/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K + + D ++FCIQE + ++ G
Sbjct: 2 KLVSWNVNGLRA------------CVRKGFLDYFNEIDADIFCIQETKLQEGQIELELNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K KP+ V +G S + V
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKFKPISVKYGLSNEESQV---------------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E+E F+L+NVY P ++ DL+ L V+L W L H+
Sbjct: 88 ----------------EGRILTLEFENFFLINVYTPNSQRDLARLDVRLEWEDVLLEHVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+ + IKPVVL GDLNVAH ID+ +N G SGFT +ER + FL+ GF+D R+ +P
Sbjct: 132 AHDRIKPVVLCGDLNVAHREIDIRNYKSNYGNSGFTDEEREKMTRFLNAGFIDTLRYFHP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IYT+W Y + GWR+DYF++S++L+ L D + + GSDH P +L ++L
Sbjct: 192 DTEGIYTWWSYMKTVRERNIGWRIDYFIVSERLREKLIDSKADTAIFGSDHCPIVLDISL 251
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 162/315 (51%), Gaps = 66/315 (20%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV G+RAW VNK +G +++ + D +V C+QE +C LP
Sbjct: 88 LKICSWNVAGLRAW--VNK----------NGLNYVIEEDPDVLCLQETKCTENDLPGQVL 135
Query: 791 ---ECPE-------GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFN 840
P+ GY+ +W ++G +GV++ K KP++VT+G +K
Sbjct: 136 QMKNGPKVTNVSNSGYYMYWCNAKKKGCSGVSLWCKLKPLKVTYGLGIK----------- 184
Query: 841 RGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSML 900
EH S+ GR++T E+E++Y++ Y P + + L L
Sbjct: 185 ----EHDSE-----------------------GRLITAEFEKYYIITTYVPNSGQKLIRL 217
Query: 901 SVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
+ +WN+ + ++ L + KPV++ GD NVAH ID+A P +N +GFT +ER+ F+
Sbjct: 218 DYRRIWNTDYKNYVGELKKKKPVIMCGDFNVAHTEIDIANPNSNKRNAGFTEEERSDFTA 277
Query: 961 FLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGD 1018
L+ G++D R L P YT+W Y + SK KGWRLDYF+++K ++ + D I
Sbjct: 278 LLEDGYIDTFRKLNPEKTGAYTFWTYMMNARSKNKGWRLDYFIVTKDIEDDICDSVIRSS 337
Query: 1019 VEGSDHAPQILYLNL 1033
V GSDH P +L L +
Sbjct: 338 VMGSDHCPIVLNLAI 352
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 156/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETAADILCLQETKVQDGQVSLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA+W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHAYWNYAVKKGYSGTAVFSKEKPLHVLYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S I D+ GSDH P
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 55/305 (18%)
Query: 731 YPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP 790
YP K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 YP---KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIE 46
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 47 LDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE- 90
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GRV+T+E+E FY+V VY P ++ +L L ++ + +
Sbjct: 91 ----------------------GRVITLEFEDFYMVTVYTPNSQAELKRLDYRMTFEDAI 128
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
++K+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D
Sbjct: 129 LEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSF 188
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+ YP+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P
Sbjct: 189 RYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVE 248
Query: 1029 LYLNL 1033
L LNL
Sbjct: 249 LELNL 253
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 152/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA +K ++ Q D + FCIQE +C ++ G
Sbjct: 2 KFVSWNVNGIRA------------CLKKGFLAYFEQVDADFFCIQESKCQAGQVEIDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K P+ V +G
Sbjct: 50 YEQYWNYALRKGYSGTAIFTKHTPLSVKYGV----------------------------- 80
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D D+GR++T+EYE+FY+V VY P +K DL+ L +L W LR +L
Sbjct: 81 ---------GDRDTEDEGRIITLEYERFYVVTVYTPNSKRDLARLDERLEWEDNLRAYLI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV+ GDLNVAH ID+ N+G SGFT +ER + L+ GF D R +YP
Sbjct: 132 ELDQQKPVIYCGDLNVAHEAIDLKNAKPNVGNSGFTNEERGKMTLLLNSGFTDTFRAMYP 191
Query: 976 NH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+T+W Y ++ + GWR+DYF++S +L H+++ +IH GSDH P +L L++
Sbjct: 192 QEDNRFTWWSYMNKVRERNIGWRIDYFIVSDRLNQHVTNADIHDQQLGSDHCPVVLELDI 251
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 53/290 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPEGYH 797
SWNVNG+RA K GF F + D ++F IQE + ++ EGY
Sbjct: 5 SWNVNGLRA-------------CLKKGFEDFFKDVDADIFAIQETKLQRNQIDLEFEGYT 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+GVA+ +K +P+ V +G G EH +
Sbjct: 52 SYYNDAIKKGYSGVAIYTKKEPMNVIYGM---------------GIEEHDQE-------- 88
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
GR++T+E+E+FY V VY P +K +L L + +W R H++ L
Sbjct: 89 ---------------GRLITLEFEKFYFVAVYTPNSKRELERLDYRQVWEDAFRQHVQKL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
E KPVVL GDLNVAHN ID+ TN +GFT QER FS L+ GF+D R+ YP
Sbjct: 134 KESKPVVLCGDLNVAHNEIDLKNDKTNHKNAGFTDQERAKFSELLNSGFIDTFRYKYPET 193
Query: 978 RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y + K GWR+DYF++S+ LK ++ D I+ ++ GSDH P
Sbjct: 194 EMYSWWSYMFKAREKNAGWRIDYFVVSEDLKENIKDAYIYTEIMGSDHCP 243
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/297 (36%), Positives = 157/297 (52%), Gaps = 54/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK-LPECPE 794
K+ SWNVNG+RA V K F ++++++ D ++FC+QE + + L E E
Sbjct: 2 KLISWNVNGLRA--CVTKGF----------YTYLKETDADIFCVQETKLQEGQILMENME 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K KP+ V +G NE
Sbjct: 50 EYAQYWNYAEKKGYSGTAIFTKIKPLSVHYGLE---------------ENEE-------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GR +T+E+E+FYLVNVY P K DLS L +L W R +L
Sbjct: 87 --PE--------------GRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV++ GDLNVAH ID+ N G +GFT +ER+ S L+ GF+D R+ Y
Sbjct: 131 QQLDAQKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAGFIDTFRYFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ +Y++W Y + + GWR+DYFL+S++L+ L D I + GSDH P IL
Sbjct: 191 PDRTDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCHITGSDHCPVIL 247
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 153/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F IF + D ++FC+QE + ++ G
Sbjct: 9 KLISWNVNGLRA--VVGKGFVDIF----------NELDADIFCLQETKLQAGQIELDLPG 56
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G AV ++ KP+ V +G + EH ++
Sbjct: 57 YEQYWNYAERKGYSGTAVFTRIKPLSVRYGMDIA---------------EHDTE------ 95
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ FYLVNVY P +K+ L+ L ++ W R +LK
Sbjct: 96 -----------------GRVITLEYDSFYLVNVYTPNSKDGLARLPYRMKWEDDFRNYLK 138
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV+ GDLNVAH ID+ P TN +GF+ +ER + L GF+D R+ YP
Sbjct: 139 TLEQTKPVVMCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTELLAAGFIDTFRYFYP 198
Query: 976 NHRI-YTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y ++ GWR+DYF++S LK L IH ++ GSDH P L L
Sbjct: 199 DKTGEYSWWSYRFNARKNNAGWRIDYFIVSDALKERLISASIHQEIFGSDHCPVELEL 256
>gi|374295499|ref|YP_005045690.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
gi|359824993|gb|AEV67766.1| exodeoxyribonuclease III [Clostridium clariflavum DSM 19732]
Length = 251
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA K F +Q D ++FCIQE + ++ EG
Sbjct: 3 KMISWNVNGIRA------------AMGKGFLEFFKQEDADIFCIQETKVQEGQITLPLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GVAV +K +PV V++G G EH
Sbjct: 51 YCQYWNYAKKKGYSGVAVFTKVEPVSVSYGI---------------GIEEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T+E++ +Y++ VY P +++ L+ L ++ W +LK
Sbjct: 88 ---------------NEGRVITLEFDDYYVITVYTPNSQKGLTRLDYRMKWEDDFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GD NVAH ID+ P +N +GFT +ER+ F N+++ GF+D R+LYP
Sbjct: 133 ALERNKPVIVCGDFNVAHKEIDLKNPQSNRKNAGFTDEERSKFDNYINNGFIDSFRYLYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y ++ GWR+DYFL+S +K L D I+ +V GSDH P
Sbjct: 193 DKTGAYTWWSYMFNARQNNAGWRIDYFLLSDCIKERLKDALIYSEVMGSDHCP 245
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM 7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM 7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D + +++ ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTCLQETKADILCLQETKVQDGQVSLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK KP++V++G
Sbjct: 50 GYHDYWNYAVKKGYSGTAVFSKVKPLQVSYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L++ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDQKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFSVLLNAGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK ++ I D+ GSDH P
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRITQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ L+L
Sbjct: 248 MTLDL 252
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F ++ D ++FCIQE + ++ EG
Sbjct: 3 KLISWNVNGIRA--CVTKGFLDYF----------KEVDADIFCIQESKLQAGQIDLELEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 51 YHQYWNYAEKKGYSGTAIFTKEEPISVFYGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+ +Y+V VY P +++ L+ L ++ W R +L
Sbjct: 90 -----------------GRVITLEFGDYYMVTVYTPNSQQKLARLDYRMTWEDCFRSYLN 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KP+++ GDLNVAHN ID+ P +N +GF+ +ER F+ FL G++D +R+ YP
Sbjct: 133 NLDKQKPIIVCGDLNVAHNEIDLKNPKSNRKNAGFSDEERAKFTEFLGNGYIDTYRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W Y ++ + GWR+DYF +S++L+ L +IH + GSDH P L +N+
Sbjct: 193 DREGAYTWWSYMFNARANNAGWRIDYFCVSERLQDKLVSADIHDHILGSDHCPVELVINI 252
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 156/299 (52%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F K+ F + D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--CVTKGF-------KESFEAI---DADFFCLQETKMQAGQLDIAFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K +P+ VT+G ++ H H
Sbjct: 50 YESYWNYAEKKGYSGTAIFTKHQPLNVTYGLGIEE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E E FYLV Y P +++ L L ++ W + ++K
Sbjct: 88 ----------------EGRVITLEMENFYLVTCYTPNSQDGLKRLEYRMRWEDDFQTYIK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P TN +GF+ +ER + FL GF+D R LYP
Sbjct: 132 RLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTQFLGKGFIDSFRTLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + K GWR+DYFL+S +L++ L D +IH +V GSDH P + LN
Sbjct: 192 EQVTYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTEVYGSDHCPVEVELNF 250
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F F DG D ++ +QEI+ +L G
Sbjct: 2 KFVSWNVNGLRA--VMGKGFMDFF----DGI------DADIIGLQEIKLSEGQLEWDKPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHA+W ++GY+G AV +K +P+ V++G +G H H
Sbjct: 50 YHAYWNYAEKKGYSGTAVFTKKEPISVSYG----IGIEEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+E FY + Y P ++ +L L ++ W R +L+
Sbjct: 88 ----------------EGRVITLEFEDFYFITCYTPNSQNELKRLDYRMTWEDDFRAYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LNE K V+L GDLNVAH ID+ P TN +GFT +ER + L GF+D R+ YP
Sbjct: 132 KLNEKKGVILCGDLNVAHEEIDIKNPKTNRHNAGFTDEERAKMTELLSAGFVDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF++S+ +K + D +IH DV GSDH P
Sbjct: 192 DQTDIYSWWSYRFKAREKNAGWRIDYFIVSEDIKDRMKDSKIHTDVMGSDHCP 244
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F + F + D ++FC+QE + ++ EG
Sbjct: 3 KLISWNVNGLRA--CVTKGFEN----------FFKDVDADIFCLQETKLQEGQIDLLLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G G +EH +
Sbjct: 51 YHQYWCYADKKGYSGTAMFTKEEPLNVCYGI---------------GIDEHDHE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E++ ++V Y P ++ +L L ++ W + +LK
Sbjct: 90 -----------------GRVITAEFDNCFVVTCYTPNSQSELKRLDYRMKWEDDFKAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV++ GDLNVAH ID+ P TN +GFT +ER+ + LD GF+D +R+ YP
Sbjct: 133 KLEEKKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERSKMTALLDDGFIDTYRYFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y + K GWR+DYF++SK L+S L +IH ++ GSDH P L +++
Sbjct: 193 DTEGVYSWWSYRFKAREKNAGWRIDYFIVSKALESKLDGAKIHTEILGSDHCPVELTIDI 252
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str. F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str. LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str. F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str. LL195]
Length = 251
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 251
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 152/292 (52%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + + + FC+QE + +L G
Sbjct: 2 KLISWNVNGLRA--CVGKDFEQQF----------KDFNADFFCLQETKMQAGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ KP+ VT+G + +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTRHKPLSVTYGIDI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P ++++L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDELRRLEYRMKWEDDFQSYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+EIKPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 KLDEIKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLSNGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++L+ L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLVDAKIHTEIMGSDHCP 243
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 184 bits (466), Expect = 3e-43, Method: Composition-based stats.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D +VFCIQE + ++ EG
Sbjct: 3 KLISWNVNGLRAC--VGKGFLEYF----------NEVDADVFCIQESKLQAGQIDLPLEG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +PV V +G G EH +
Sbjct: 51 YYQYWNYAEKKGYSGTAMFTKEEPVSVAYGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+ ++Y+V Y P +K+ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITAEFPEYYVVTCYTPNSKDGLARLPYRMEWEDAFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GF+ +ER FS+ L GF+D +R+ YP
Sbjct: 133 GLEEKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERGKFSDVLAAGFIDTYRYFYP 192
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y + +K GWR+DYF +S+ LK L +IH +V+GSDH P
Sbjct: 193 DKTEVYSWWSYRFSARAKNAGWRIDYFCVSEALKDRLVSADIHMEVQGSDHCP 245
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 149/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKEFEQQF----------KDLDADFFCLQETKMQAGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G + +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIYTKHKPLSVTYGIDI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E FYLV VY P +++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMEDFYLVTVYTPNSQDGLRRLEYRMKWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 KLDEKKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKMTQLLSNGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++LK L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIMGSDHCP 243
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 183 bits (465), Expect = 3e-43, Method: Composition-based stats.
Identities = 101/293 (34%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA VNK F F + + ++F IQE + E++P EG
Sbjct: 2 KLISWNVNGIRAC--VNKGF----------LDFFNKENADIFSIQETKVQEEQIPFQLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ SK +P+ + +G G EH +
Sbjct: 50 YYQYWNFAQKKGYSGTAIFSKKEPLNIRYGI---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FY+V VY P ++ +L+ L ++ W +L+
Sbjct: 89 -----------------GRVITLEFEKFYMVTVYTPNSQRELARLEYRMKWEDDFLHYLR 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L ++KPV+ GDLNVAH ID+ P N +GF+ +ER + +D GF D R+ YP
Sbjct: 132 DLEQLKPVIFCGDLNVAHKEIDLKNPKANKNNAGFSAEERGKLTRVMDQGFTDTFRYFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W Y ++ + GWR+DYF +S +LK L D I+ DV GSDH P
Sbjct: 192 EQTEAYTWWSYMFNARANNAGWRIDYFCVSAELKDQLKDAVIYNDVLGSDHCP 244
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F I +++ + ++FC+QE + ++ +G
Sbjct: 3 KLISWNVNGLRA--CVKKGFLDI----------LKESNADIFCVQESKLQEGQIDLNLDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV SK KP+ ++ G G EH +
Sbjct: 51 YYDYWNYAEKKGYSGTAVFSKEKPLNISLGI---------------GIEEHDKE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+FYLVNVY P +++ L+ + ++ W + R +L
Sbjct: 90 -----------------GRVLTLEFEEFYLVNVYTPNSQQKLARIDYRMAWENDFRHYLN 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ K V++ GDLNVAH ID+ P N +GF+ +ER F L GF+D +R+ YP
Sbjct: 133 ELNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGELLKSGFIDTYRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ + GWR+DYFL+SK + L D IH +EGSDH P
Sbjct: 193 GKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQIEGSDHCP 245
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 151/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K GF F + D ++FCIQE + +L +
Sbjct: 2 KLVSWNVNGIRA-------------CMKKGFMDFFQAIDADIFCIQETKMQPGQLEIETD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY + ++GY+GV V SK +P+ V++G G +EH +
Sbjct: 49 GYVQYMNSADKKGYSGVMVFSKKEPLSVSYGL---------------GIDEHDHE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV VY P +K+ L L ++ W R +L
Sbjct: 89 ------------------GRVITCEYDTFYLVCVYTPNSKDGLLRLDYRMQWEDAFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L E K VV+ GDLNVAH ID+ P TN +GFT +ER + L GF+D +R+LY
Sbjct: 131 QRLKESKSVVVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTTLLSSGFVDSYRYLY 190
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ +Y++W Y + K GWR+DYFL+S+ K + + +IH D+ GSDH P
Sbjct: 191 PDKENVYSWWSYRFSAREKNAGWRIDYFLVSEDAKERIEEAQIHTDIYGSDHCP 244
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 160/301 (53%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF + + D ++FC+QE + ++ +
Sbjct: 2 KLISWNVNGLRA-------------AVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLK 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K +P+ V +G + P
Sbjct: 49 AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGI-------------------------P 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
H +GRV+T+E+E F++V VY P ++ +L L ++ + + ++
Sbjct: 84 EHDT-------------EGRVITLEFEAFFMVTVYTPNSQAELKRLDYRMTFEDAILEYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ Y
Sbjct: 131 KNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + ++ GWR+DYF++SK+LK L D +IH +V GSDH P L LN
Sbjct: 191 PDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVLGSDHCPVELELN 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM 15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM 15053]
Length = 250
Score = 183 bits (465), Expect = 4e-43, Method: Composition-based stats.
Identities = 107/290 (36%), Positives = 143/290 (49%), Gaps = 52/290 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNGIRA QK F ++ D ++FCIQE + +L GY
Sbjct: 5 SWNVNGIRA------------CVQKGFMDFFQEADADIFCIQETKMQEGQLELETPGYFQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G AV +K +P+ T G G EH +
Sbjct: 53 YWNYAERKGYSGTAVFTKKEPLSFTCGI---------------GIEEHDKE--------- 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T+E+E+FY V VY P ++ +L+ LS ++ W +LK L
Sbjct: 89 --------------GRVITLEFEEFYFVTVYTPNSQSELARLSYRMEWEDAFLAYLKKLE 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
E KPV+ GDLNVA ID+ P TN +GFT +ER F GF+D R+ YP+
Sbjct: 135 EKKPVIFCGDLNVAAEEIDLKNPKTNRKNAGFTDEEREKFRKIKASGFVDTFRYFYPDEE 194
Query: 979 -IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y R K GWR+DYF +S+ LK L D IH DV GSDH P
Sbjct: 195 GIYSWWSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHTDVMGSDHCP 244
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------DSVDADIFCLQETKLQAGQIDLDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +KT+P+ V +G + P
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKTEPLSVQYGLGI-------------------------PE 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H D+GRV+T+E+++F++V VY P ++ +L L ++ + + ++K
Sbjct: 85 HD-------------DEGRVITLEFDKFFMVTVYTPNSQAELKRLDYRMTFEDAILAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPVVL GDLNVAH ID+ P TN +GF+ +ER F+ FL+ GF+D R+ YP
Sbjct: 132 KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGFVDSFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK +L D +IH DV GSDH P L LN+
Sbjct: 192 DLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVLGSDHCPVELELNI 251
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 183 bits (465), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K + ++ D +VFCIQE + ++ G
Sbjct: 3 KMISWNVNGLRA------------CVEKGFLDYFKEMDADVFCIQESKLQEGQIDLTLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K KP+ V +G + + EH +
Sbjct: 51 YHQYWNYAEKKGYSGTALFTKEKPLSVAYGIN---------------AEEHDRE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+ EY ++Y+V Y P ++ +L+ L +L W + +LK
Sbjct: 90 -----------------GRVIAAEYPEYYVVTCYTPNSQNELARLPYRLTWEDAVLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D +R+ YP
Sbjct: 133 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTVLLESGFIDTYRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYF +S+ LK L+ IH +V GSDH P
Sbjct: 193 EQEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRLASAAIHTEVLGSDHCP 245
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 171/360 (47%), Gaps = 62/360 (17%)
Query: 679 KLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIG 738
K NE G G +N ++ + + E PI+ ++DP + K D N KI
Sbjct: 6 KKNEQEAGDGDHDNGTA-PAAKKGKKVKEPEAPIL-YSDPPDKMNSK---DGRAANMKIT 60
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE----CPE 794
SWNV+G+RAW + K G ++R +V C+QE +C + LP+ PE
Sbjct: 61 SWNVDGLRAWVK------------KKGLDWVRDEAPDVLCLQETKCAEKSLPDEITSMPE 108
Query: 795 GYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
H +W ++GY+GVA+L KT+P++VT+G G EH +
Sbjct: 109 FPHKYWAGSDEKEGYSGVAMLCKTEPLKVTYGI---------------GKEEHDKE---- 149
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T E+ F+LV Y P + L L + W+ + +
Sbjct: 150 -------------------GRVITAEFPTFFLVTAYVPNSGRGLVRLDYRKTWDVEFKAY 190
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L++ KP+VL GDLNVAH ID+ N +GFT +ER F+ L GF D R L
Sbjct: 191 LSDLDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLAAGFTDSFREL 250
Query: 974 YPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP YT+W Y + SK GWRLDYF++S L L D +I GSDH P L++
Sbjct: 251 YPEQANAYTFWTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAMGSDHCPITLHM 310
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 150/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKEFEQQF----------KDLDADFFCLQETKMQAGQLDISFLG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G ++ +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPLSVTYGINI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P +++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDGLRRLDYRMKWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 KLDEKKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQLLSNGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++LK L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIMGSDHCP 243
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA QK F D ++FCIQE + ++ PEG
Sbjct: 2 KLISWNVNGLRA------------CMQKGFAEFFTASDADIFCIQESKLQEGQIDFAPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+A+W ++GY+G A+ ++ +P+ V +G + P
Sbjct: 50 YYAYWNYAQKKGYSGTAIFTRKEPLSVHYGIGI-------------------------PQ 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H +GRV+T+E+ FY+V Y P ++ +L+ LS ++ W +LK
Sbjct: 85 HDT-------------EGRVITLEFPDFYMVTCYTPNSQNELARLSYRMEWEDAFLSYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KP++L GDLNVAH ID+ P TN +GFT +ER + L GF D RH YP
Sbjct: 132 GLDRNKPLILCGDLNVAHEEIDLKNPKTNRKNAGFTDEERTKMTALLSAGFTDTFRHFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y + K GWR+DYF+ S L L D I DV GSDH P L ++L
Sbjct: 192 DTEGIYSWWSYRFHAREKNAGWRIDYFITSSALDDRLVDAGILTDVTGSDHCPVTLTVDL 251
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R+ D NVFCIQE + ++ G
Sbjct: 3 KLISWNVNGLRA--CVGKGF----------LDFFREADANVFCIQESKLQEGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G M+ EH ++
Sbjct: 51 YHQYWNYARKKGYSGTAMFTKEEPMSVSYGIGME---------------EHDTE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+ ++Y+V Y P +++ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITAEFPEYYVVTCYTPNSQDGLARLDYRMKWEDDFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPVV GDLNVAH ID+ P TN +GFT +ER F++ L GF+D R+ YP
Sbjct: 133 KLEKNKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLAAGFVDTFRYFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L IH V GSDH P
Sbjct: 193 DLEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVMGSDHCP 245
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------EEVDSDIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 251
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ + ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETEADILCLQETKVQDGQVSLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA+W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHAYWNYAVKKGYSGTAVFSKEKPLHVFYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDTF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK ++ I D+ GSDH P
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRINQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 162/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G +EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIDEHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+E+E F+++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRVITLEFEDFHMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L++ KPV+ GDLNV+H ID+ P +N GF+ +ER F+ L+ GF+D +R LY
Sbjct: 132 KRLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEEREKFTKILEEGFVDTYRFLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y +K GWRLDYF+ S++LK ++D +I+ ++ GSDH P L+++
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITDAKINSEIMGSDHCPVELHMD 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 149/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKEFEQQF----------KDLDADFFCLQETKMQAGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G G +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPLNVTYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P +++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDGLRRLDYRMKWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPVV+ GD+NVAH ID+ P TN +GFT +ER + L GF+D R LYP
Sbjct: 132 KLDEKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQLLGNGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R + GWR+DYFLIS++L+ L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMGSDHCP 243
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 7 KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 54
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 55 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE------ 93
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY+V VY P ++ +L L ++ + + ++K
Sbjct: 94 -----------------GRVITLEFEDFYMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 136
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 137 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 196
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 197 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 256
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 183 bits (464), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKVQSGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G ++ EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGLEIE---------------EHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 SDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|421882518|ref|ZP_16313789.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315363|emb|CCF81785.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 250
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 146/290 (50%), Gaps = 52/290 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA QK F+ Q ++FC+QE + E+ E Y +
Sbjct: 5 SWNVNGLRA------------CMQKGFKEFLEQSGADIFCVQETKMHPEQANFIFEDYAS 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
FW ++GY+GV LSK P+ T+G G +H D+E
Sbjct: 53 FWNSAQKKGYSGVLTLSKNAPINTTYGI---------------GVAQH--DLE------- 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T EY FYLVNVY P ++ L L +L W R L L
Sbjct: 89 --------------GRVVTCEYANFYLVNVYVPNSQRGLLRLDYRLKWEEAFRQFLADLM 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
K VV+ GDLNVAH ID+ P +N +GF+ +ER+ FS LDLG +D +RH YPN +
Sbjct: 135 GHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHAFSQLLDLGLIDTYRHFYPNQQ 194
Query: 979 -IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IYT+W Y + ++ GWR+DYFL+S L+ L D IH + GSDH P
Sbjct: 195 GIYTWWSYMNEARARNIGWRIDYFLVSHTLQEQLKDALIHPHILGSDHCP 244
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 160/301 (53%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF + + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA-------------AVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 49 AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GIPEHDTE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++
Sbjct: 89 ------------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L+ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ Y
Sbjct: 131 KNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LN
Sbjct: 191 PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELN 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG RA QK F + D ++FCIQE + ++ PEG
Sbjct: 2 KLISWNVNGFRA------------CLQKGFEDFFKSADADIFCIQETKMQPDQADFSPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G AV +K +P VT+G + HT
Sbjct: 50 YHKYFHSAVKKGYSGTAVYTKNEPKAVTYGLNG-----AHT------------------- 85
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GRV+T EY+ FY V Y P A+ +L + ++ + +R +L
Sbjct: 86 ---------------DEGRVITCEYDDFYFVCCYVPNAQNELKRIDYRMEFEDDMRAYLC 130
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+++KPV+ GDLNVAH ID+ P +N+G +GF+ QER F+ L GF D R LYP
Sbjct: 131 GLDKLKPVIYCGDLNVAHEEIDLKNPKSNVGNAGFSDQERGKFTELLAAGFADTFRRLYP 190
Query: 976 -NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYF++S++L + D +I DV GSDH P
Sbjct: 191 ETTGVYSWWSYRFNARKNNAGWRIDYFVVSERLMDKVGDSKILTDVMGSDHCP 243
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 196/393 (49%), Gaps = 71/393 (18%)
Query: 667 RKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEV-PIIDFNDPFRILEHK 725
+ K S K + + + + G +I+++ S+ + + EE+ ++P+ +L HK
Sbjct: 191 KAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTISSKLLKTEEIISSPSQSEPWTVLAHK 250
Query: 726 RRQ-DQYPWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM 769
+ Q D +N K+ +WNVNG+R + F+++ L Q++ F
Sbjct: 251 KPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFES-FSALQLAQRENF--- 306
Query: 770 RQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFWFPG-TRQGYAGVAVLSKTKPVRVT 823
++ C+QE + ++ + E +GY H+FW ++ GY+G A++S+ KP+ V
Sbjct: 307 -----DILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAIISRIKPLSVR 361
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G + GSD ++ +GR++T E++ F
Sbjct: 362 YGTGLS-----------------GSDHDT-------------------EGRIVTAEFDSF 385
Query: 884 YLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPL 942
YL+N Y P + + L LS ++ W+ L H+K L + KPVVL GDLN AH ID+ P
Sbjct: 386 YLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPA 445
Query: 943 TNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGWRLDYF 1000
N +GFT +ER F +NFLD GF+D R +P YTYW Y K KGWRLDYF
Sbjct: 446 GNKRSAGFTEEERQSFGANFLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGWRLDYF 505
Query: 1001 LISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L+S+ + +++ D I D+ GSDH P L L L
Sbjct: 506 LVSQSIAANVHDSYILPDINGSDHCPIGLILKL 538
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 182 bits (463), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLDLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 GYYTYWNYALKKGYSGTAIFTKKEPISVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ FY++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPVV GDLNVAH ID+ P +N GF+ +ER + L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKITRVLEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y +K GWRLDYF+IS++LK + D +I+ +V GSDH P L+++
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFIISERLKHKILDAKINSEVMGSDHCPVELHMD 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 155/299 (51%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F++ F FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--CVTKGFKESFVELNADF----------FCLQETKMQEGQLDITFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V +G + +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPINVHYGLDI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E F+LV Y P +++ L L ++ W + ++K
Sbjct: 89 -----------------GRVITLEMETFFLVTCYTPNSQDGLKRLDYRMKWEDDFQAYIK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPVV+ GDLNVAH ID+ P TN +GFT +ER + FL+ GF+D R LYP
Sbjct: 132 QLDKKKPVVICGDLNVAHEEIDLKNPKTNRKNAGFTDEERAKMTQFLNNGFIDSFRTLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + K GWR+DYFL+S +L++ L D +IH +V GSDH P + LNL
Sbjct: 192 EQITYSWWSYRFKAREKNAGWRIDYFLLSNRLRNQLIDAKIHTEVYGSDHCPVEVELNL 250
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 151/300 (50%), Gaps = 56/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPECP 793
K+ SWNVNG+RA V K F F + D ++FC+QE + + L P
Sbjct: 2 KLVSWNVNGLRA--CVTKGFMDYF----------NEADADIFCVQETKLQAGQIELDLGP 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G AV ++ P+ V +G
Sbjct: 50 E-YQQYWNYAEKKGYSGTAVFTRIAPLSVRYGLEED------------------------ 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
S PE GRV+T+E+E FYLVNVY P AK DLS L +L W R +
Sbjct: 85 -SEPE--------------GRVITLEFEDFYLVNVYTPNAKRDLSRLDYRLEWEERFRTY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L+E KPV++ GDLNVAH ID+ +N G SGFT++ER ++ L GF+D RH
Sbjct: 130 LLQLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHF 189
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ +Y++W Y + + GWR+DYFL S +L L D EI V GSDH P L L
Sbjct: 190 YPDRTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVLGSDHCPVSLTL 249
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 156/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F +F + D ++FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVKHGFLDVF----------NELDADIFCVQETKLQEGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +PV V++G +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKREPVAVSYGLGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GRV+T+EYE+F+LV Y P ++ +L L ++ W+ R ++K
Sbjct: 83 -PEFDQ----------EGRVITLEYEEFFLVTCYTPNSQPELRRLDYRMNWDDAFRAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAH ID+ TN +GFT +ER F+ L GF D +R+ YP
Sbjct: 132 QLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELLQSGFTDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ + GWR+DYF+ S+ L L+D +IH ++ GSDH P L LNL
Sbjct: 192 DKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTEIFGSDHCPIELDLNL 251
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 163/301 (54%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+ VT+G ++ EH
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGLEIE---------------EHDQ------ 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+E+E FY++ +Y P +K L L ++ W R ++
Sbjct: 89 -----------------EGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+E KPV+ GDLNVAH ID+ P +N GF+ +ER F+ L+ GF+D +R+LY
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y +K GWRLDYF++S+++K +++ +I+ +V GSDH P L++N
Sbjct: 192 SDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMGSDHCPVELHIN 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|336452587|ref|YP_004607053.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332614|emb|CCB79341.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 251
Score = 182 bits (463), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 146/290 (50%), Gaps = 52/290 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA QK F+ Q ++FC+QE + E+ E Y +
Sbjct: 6 SWNVNGLRA------------CMQKGFKEFLEQSGADIFCVQETKMHPEQANFIFEDYAS 53
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
FW ++GY+GV LSK P+ T+G G +H D+E
Sbjct: 54 FWNSAQKKGYSGVLTLSKNAPINTTYGI---------------GVAQH--DLE------- 89
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T EY FYLVNVY P ++ L L +L W R L L
Sbjct: 90 --------------GRVVTCEYADFYLVNVYVPNSQRGLLRLDYRLKWEEAFRRFLADLM 135
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
K VV+ GDLNVAH ID+ P +N +GF+ +ER+ FS LDLG +D +RH YPN +
Sbjct: 136 GHKAVVVCGDLNVAHKEIDLKNPESNHHNAGFSPEERHAFSQLLDLGLIDTYRHFYPNQQ 195
Query: 979 -IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IYT+W Y + ++ GWR+DYFL+S L+ L D IH + GSDH P
Sbjct: 196 GIYTWWSYMNEARARNIGWRIDYFLVSHTLQEQLKDALIHPHILGSDHCP 245
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 137/268 (51%), Gaps = 57/268 (21%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
NF I +WNV+G+R+W +K ++ ++ CIQE +C + KLPE
Sbjct: 767 NFHITTWNVDGLRSW------------LKKGCLDILKYDKPDILCIQETKCAVYKLPEEV 814
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EGY W + GYAGV ++ K KP+ V +G S EH ++
Sbjct: 815 KTIEGYETLWCCSDKDGYAGVGIMVKDKPLNVIYGID---------------SKEHDTE- 858
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GR +TVEYE F++VNVY P A +L L +L WN
Sbjct: 859 ----------------------GRCITVEYETFFVVNVYVPHAGRNLVTLPKRLDWNEQF 896
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+K+L+ KPV++ GD+NVAH ID+A P TN +GF+++ER+ + FL G++D++
Sbjct: 897 EKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIY 956
Query: 971 RHLYP-NHRIYTYWPYY--DRPSKMKGW 995
RHLYP + YT+W Y RP+ + GW
Sbjct: 957 RHLYPEKEKAYTFWIYMRNARPNNV-GW 983
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +K F+ + C+QE + ++ +G
Sbjct: 2 KFISWNVNGLRA------------CVKKGFLDFVEAEQPDFLCVQETKLQEGQIDLQLDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P++VT+G ++ EH +
Sbjct: 50 YYQYWNYAVKKGYSGTAIFTKHEPLQVTYGLNIA---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY FYLV VY P ++ +L+ L +L W R +L
Sbjct: 89 -----------------GRVITLEYNDFYLVTVYTPNSQNELARLDYRLTWEEAFRNYLI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ +KPV++ GDLNVAH ID+ P TN +GFTI+ERN + L+ GF+D R+ YP
Sbjct: 132 GLDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y +K GWR+DYF+ SK L+S L D I+ DV GSDH P L L
Sbjct: 192 TKENCYSWWSYRAGARAKNVGWRIDYFITSKALESRLEDARIYPDVLGSDHCPVGLQL 249
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 RLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GIPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LNL
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL 251
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 156/302 (51%), Gaps = 54/302 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--CP 793
K+ SWNVNG RA + +K + ++FC+QEI+ ++ +
Sbjct: 2 KLISWNVNGYRA------------VMKKGFMDAFNSLNADIFCLQEIKMKENQMTDEMNI 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGYH + + + GY+G V +K +P+ V++G G +EH +
Sbjct: 50 EGYHRYSYSANKAGYSGTLVYTKVEPIGVSYGI---------------GIDEHDT----- 89
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GRV+T EYE F+LVNVY P +K+ L L +++W +
Sbjct: 90 ------------------EGRVITCEYEDFFLVNVYTPNSKQKLERLDYRMVWEDEFHNY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L + KPV++ GDLNVAHN ID+ P +N +GFT +ERN S L+ G++D R+
Sbjct: 132 LNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFRYF 191
Query: 974 YPNHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y+YW Y+ + + GWR+DYFL+S LK +L D +IH + GSDH P L +
Sbjct: 192 YPDKTDEYSYWSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIHQSIMGSDHCPVELEI 251
Query: 1032 NL 1033
N
Sbjct: 252 NF 253
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 154/298 (51%), Gaps = 54/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECP 793
K+ SWNVNG+RA V K F ++++++ + ++FC+QE + + L E
Sbjct: 1 MKLISWNVNGLRA--CVTKGF----------YTYLKETNPDIFCVQETKLQEGQILMENM 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G A+ +K KP+ V +G
Sbjct: 49 EEYTQYWNYAEKKGYSGTAIFTKIKPLSVHYGL--------------------------- 81
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+ +G +GR +T+E+E+FYLVNVY P K DLS L +L W R +
Sbjct: 82 ------------EENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+ L+ KPV++ GDLNVAH ID+ N G +GFT +ER S L GF+D RH
Sbjct: 130 LQQLDASKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHF 189
Query: 974 YPNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YP+ +Y++W Y + + GWR+DYFL+S +L+ L D I + GSDH P IL
Sbjct: 190 YPDRTEVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCHITGSDHCPVIL 247
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 182 bits (462), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + K F F + D +VFC+QE + P + + + P
Sbjct: 2 KFISWNVNGLRA--CLKKGFMESFCKL----------DADVFCLQETKMQPEQAILDLP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV S+ +P+ VT+G ++ H H
Sbjct: 49 GYKQYWNSAEKKGYSGTAVFSRIEPLHVTYGLGIEE----HDH----------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+E+ + +LV VY P +K +L L+ ++ W R +L
Sbjct: 88 -----------------EGRVITLEFPEMFLVTVYTPNSKRELERLAYRMEWEDAFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+E KPV++ GDLNVAH ID+ P TN +GFT +ER F LD GF+D R LY
Sbjct: 131 MKLDEQKPVIVCGDLNVAHQEIDLKNPKTNHHNAGFTDEERGKFGELLDAGFIDTFRTLY 190
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ IYT+W Y + GWR+DYF+ SK+L+ + D IH ++ GSDH P L L
Sbjct: 191 PDRTGIYTWWSYLRKARDNNAGWRIDYFVASKRLQEKIQDATIHNEIFGSDHCPVGLEL 249
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 153/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D +VFCIQE + ++ G
Sbjct: 3 KLISWNVNGLRA--CVGKGF----------LDFFQAVDADVFCIQESKLQEGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV ++ +P+ V +G M+ EH ++
Sbjct: 51 YHQYWNYARKKGYSGTAVFTREEPISVAYGIGME---------------EHDTE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+ ++Y+V Y P +++ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITAEFPEYYVVTCYTPNSQDGLARLDYRMKWEDDFLSYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAH ID+ P TN +GFT +ER F++ L GF+D R+ YP
Sbjct: 133 GLEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLSAGFIDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y + +K GWR+DYF +S+ LK L IH D+ GSDH P L +N
Sbjct: 193 DMEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHTDIMGSDHCPVELVVN 251
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 151/300 (50%), Gaps = 56/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPECP 793
K+ SWNVNG+RA V K F F + D ++FC+QE + + L P
Sbjct: 2 KLVSWNVNGLRA--CVTKGFMDYF----------NEADADIFCVQETKLQAGQIELDLGP 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G AV ++ P+ V +G
Sbjct: 50 E-YQQYWNYAEKKGYSGTAVFTRIAPLSVRYGLEED------------------------ 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
S PE GRV+T+E+E FYLVNVY P AK DLS L +L W R +
Sbjct: 85 -SEPE--------------GRVITLEFEGFYLVNVYTPNAKRDLSRLDYRLEWEERFRTY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L+E KPV++ GDLNVAH ID+ +N G SGFT++ER ++ L GF+D RH
Sbjct: 130 LLQLDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHF 189
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ +Y++W Y + + GWR+DYFL S +L L D EI V GSDH P L L
Sbjct: 190 YPDRTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVLGSDHCPVSLTL 249
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 156/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F +F + D ++FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVKHGFLDVF----------NELDADIFCVQETKLQEGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV +K +PV V++G +
Sbjct: 50 YHQYWNYAEKKGYSGTAVFTKREPVAVSYGLGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GRV+T+EYE+F+LV Y P ++ +L L ++ W+ R ++K
Sbjct: 83 -PEFDQ----------EGRVITLEYEKFFLVTCYTPNSQPELRRLDYRMNWDDAFRAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAH ID+ TN +GFT +ER F+ L GF D +R+ YP
Sbjct: 132 QLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELLQSGFTDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ + GWR+DYF+ S+ L L+D +IH ++ GSDH P L LNL
Sbjct: 192 DKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTEIFGSDHCPIELDLNL 251
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 156/305 (51%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ + ++ C+QE + ++ E
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETEADILCLQETKVQDGQVSLQLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA+W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHAYWNYAVKKGYSGTAVFSKEKPLHVFYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KDYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S I D+ GSDH P
Sbjct: 188 RYLYPDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ L+L
Sbjct: 248 MTLDL 252
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 140/262 (53%), Gaps = 42/262 (16%)
Query: 768 FMRQHDLNVFCIQEIRCPLEKLP-ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGF 826
F ++ D ++FC+QE + +L + PE YH +W ++GY+G A+ +K +P+ VT+G
Sbjct: 3 FFKEADADIFCLQETKMQEGQLVLDLPE-YHQYWNSAVKKGYSGTAIFTKKEPLSVTYGL 61
Query: 827 SMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLV 886
G EH + GRV+T+E+E FY +
Sbjct: 62 ---------------GIEEHDQE-----------------------GRVITLEFEDFYFI 83
Query: 887 NVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLG 946
VY P ++ +L+ L ++ W +LK L E KPV+ GDLNVAH ID+ P TN
Sbjct: 84 TVYTPNSQSELARLDYRMTWEDAFLAYLKKLEETKPVIFCGDLNVAHKEIDLKNPKTNRK 143
Query: 947 KSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISK 1004
+GFT +ER FS LD GF+D +R+ YP+ IY++W Y + K GWR+DYF SK
Sbjct: 144 NAGFTDEERAKFSALLDAGFIDTYRYFYPDKEGIYSWWSYRFKAREKNAGWRIDYFCTSK 203
Query: 1005 QLKSHLSDLEIHGDVEGSDHAP 1026
L+S L D +I +V GSDH P
Sbjct: 204 ALESRLEDAKILTNVFGSDHCP 225
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA QK F D++ FCIQE + ++ G
Sbjct: 2 KFISWNVNGLRA------------CVQKGFLDFFNSIDVDFFCIQESKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKNEPLSVSYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ FYLV Y P ++ +L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEYDNFYLVTCYTPNSQNELKRLPYRMQWEDDFREYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPVVL GDLNVAHN ID+ P TN +GF+ +ER + L GF D R+ YP
Sbjct: 132 ALDAQKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF+ SK++ L IH DV GSDH P
Sbjct: 192 DAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVLGSDHCP 244
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 193/393 (49%), Gaps = 73/393 (18%)
Query: 667 RKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEV-PIIDFNDPFRILEHK 725
+ K S K + + + + G +I+++ S+ + + EE+ ++P+ +L HK
Sbjct: 182 KAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTISSELLKTEEIISSPSQSEPWTVLAHK 241
Query: 726 RRQ-DQYPWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM 769
+ Q D +N K+ +WNVNG+R + F+++ L Q++ F
Sbjct: 242 KPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFES-FSALQLAQRENF--- 297
Query: 770 RQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFWFPG-TRQGYAGVAVLSKTKPVRVT 823
++ C+QE + ++ + E +GY H+FW ++ GY+G A++S+ KP+ V
Sbjct: 298 -----DILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAIISRIKPLSVR 352
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G + G D E GR++T E++ F
Sbjct: 353 YGTGLS-----------------GHDTE---------------------GRIVTAEFDSF 374
Query: 884 YLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPL 942
YL+N Y P + + L LS ++ W+ L H+K L + KPVVL GDLN AH ID+ P
Sbjct: 375 YLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPA 434
Query: 943 TNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGWRLDYF 1000
N +GFTI+ER F +N LD GF+D R +P YTYW Y K KGWRLDYF
Sbjct: 435 GNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGWRLDYF 494
Query: 1001 LISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L+S+ + +++ D I D+ GSDH P L L L
Sbjct: 495 LVSQSIAANVHDSYILPDINGSDHCPIGLILKL 527
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 155/298 (52%), Gaps = 54/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECP 793
K+ SWNVNG+RA V K F ++++++ + ++FC+QE + + L E
Sbjct: 1 MKLISWNVNGLRA--CVTKGF----------YTYLKETNADIFCVQETKLQEGQILMENM 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G A+ +K KP+ V +G NE
Sbjct: 49 EEYTQYWNYAEKKGYSGTAIFTKIKPLSVHYGLE---------------ENEE------- 86
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
PE GR +T+E+E FYLVNVY P K DLS L +L W R +
Sbjct: 87 ---PE--------------GRTITLEFENFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+ L+ +KPV++ GDLNVAH ID+ N G +GFT +ER S LD GF+D R
Sbjct: 130 LQQLDALKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAGFIDTFRTF 189
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YP+ +Y++W Y + + GWR+DYFL+S++L+ L D I + GSDH P IL
Sbjct: 190 YPDRTDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCHITGSDHCPVIL 247
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 60/287 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
WN+KI SWNV G+R+W K G F+ ++ C+QE +C ++LP+
Sbjct: 22 WNYKISSWNVAGLRSWVG------------KGGLDFIEHEQPDILCLQETKCTEDQLPDE 69
Query: 793 P---EGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+GYH +W PG GYAGVA+ S+ P+ V++G
Sbjct: 70 ARHIKGYHPYWLCKPG---GYAGVAIYSRKMPIHVSYGL--------------------- 105
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
D DGR++T EYE+FYLV VY P A L L ++ W+
Sbjct: 106 -----------------GDEEQDQDGRLLTAEYEKFYLVCVYVPNAGNKLVTLPKRMRWD 148
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+L+ L+ KPV+L GD+NVAH ID+A P TN +GFT +ER+ S L GF+
Sbjct: 149 EKFHQYLRELDSKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTQEERDGLSKLLSFGFV 208
Query: 968 DVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSD 1012
D R LYP+ + Y++W Y +K GWRLDYF++S++ ++D
Sbjct: 209 DTFRQLYPDRKAAYSFWTYMGGARAKNVGWRLDYFIVSQRFTDKVTD 255
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 151/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + L ++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------EKLDADMFCLQETKLQLHQIELELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ ++ KP+ V +G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAIFTRVKPLNVIYGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVTCYTPNSQRELARLEYRMTWEDAFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPV+L GDLNVAHN ID+ P TN +GFT +ER + L+ GF D R LY
Sbjct: 131 LELDAKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFTDEEREKMTELLNAGFTDTFRKLY 190
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ S +L + + +IH D+ GSDH P L +N
Sbjct: 191 PDVTDAYSWWSYMGKARDRNVGWRIDYFITSARLDKDIVEAKIHPDIFGSDHCPVELEIN 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 154/298 (51%), Gaps = 54/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECP 793
K+ SWNVNG+RA V K F ++++++ + ++FC+QE + + L E
Sbjct: 1 MKLISWNVNGLRA--CVTKGF----------YTYLKETNPDIFCVQETKLQEGQILMENM 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G A+ +K KP+ V +G
Sbjct: 49 EEYTQYWNYAEKKGYSGTAIFTKIKPLSVHYGL--------------------------- 81
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+ +G +GR +T+E+E+FYLVNVY P K DLS L +L W R +
Sbjct: 82 ------------EENGEPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+ L+ KPV++ GDLNVAH ID+ N G +GFT +ER S L GF+D RH
Sbjct: 130 LQQLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHF 189
Query: 974 YPNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YP+ +Y++W Y + + GWR+DYFL+S +L+ L D I + GSDH P IL
Sbjct: 190 YPDRTEVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCHITGSDHCPVIL 247
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 182 bits (461), Expect = 1e-42, Method: Composition-based stats.
Identities = 107/294 (36%), Positives = 148/294 (50%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+R S V K F F R+ D ++ C+QE + +L E PE
Sbjct: 2 KLISWNVNGLR--SCVGKGFLDYF----------RRADADIVCVQETKLQEGQLELELPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ +P+ V G S G D E
Sbjct: 50 GYRQYWNCAEKKGYSGTAVFTRFEPLSVRKGLS------------------DGDDPE--- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+ F+LVNVY P A+ DLS L ++ W R +L
Sbjct: 89 ------------------GRVLTLEFPAFFLVNVYTPNARRDLSRLEYRIAWEERFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+ KPVV+ GDLNVAH ID+ N G +GFT +ER + L+ GF D RH Y
Sbjct: 131 KELDARKPVVVCGDLNVAHREIDLKNAKFNRGNAGFTDEEREAMTRLLEAGFTDTFRHFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YT+W + + + GWR+DYFL+S +L +L D I + GSDH P
Sbjct: 191 PDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLAPYLEDALIDSGIMGSDHCP 244
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +K + D ++FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VVKKGFLEYFDSVDADIFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKKEPLSVQYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFENFFMVTVYTPNSQAELKRLDYRMTFEDAILAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV+L GDLNVAH ID+ P TN +GF+ +ER F+ FL+ GF+D R+ YP
Sbjct: 132 KLDETKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGFVDSFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK +L D +IH DV GSDH P L LN+
Sbjct: 192 DLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVLGSDHCPVELELNV 251
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 150/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + + + FC+QE + +L G
Sbjct: 2 KLISWNVNGLRA--CVGKDFEQQF----------KALNADFFCLQETKMQAGQLDISFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G M +EH +
Sbjct: 50 YASYWNYADKKGYSGTAIFTKHKPLDVTYGIGM---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P +++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDGLRRLDYRMKWEKDFQDYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPVV+ GD+NVAH ID+ P TN +GFT +ER + LD GF+D R LYP
Sbjct: 132 RLDRKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQLLDSGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R + GWR+DYFLIS++L+ L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMGSDHCP 243
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 157/299 (52%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
++ SWNVNG+RA V K F + M Q D ++FCIQE + ++ E P+
Sbjct: 3 QLVSWNVNGLRA--CVKKGFLDV----------MEQLDADIFCIQETKLQEGQIDLELPD 50
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G AV +K KP+ V +G G +E +
Sbjct: 51 -YYQYWNYAEKKGYSGTAVFTKIKPLSVKNGI---------------GVDEFDHE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++ ++LV Y P ++ +L+ LS ++ W R +L
Sbjct: 90 ------------------GRVITLEFDDYFLVTCYTPNSQSELARLSYRMDWEENFREYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L E KPV+L GDLNVAH ID+ P TN +GFT +ER F+ L+ GF+D RH Y
Sbjct: 132 LKLEEDKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKFTKLLEAGFIDTFRHFY 191
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ Y++W Y R K GWR+DYF +S+ L+ L++ IH D+ GSDH P LYL
Sbjct: 192 PDVTEAYSWWSYRFRAREKNAGWRIDYFCVSEGLEERLAEAVIHTDIYGSDHCPVGLYL 250
>gi|198420194|ref|XP_002123983.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ciona intestinalis]
Length = 337
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 161/319 (50%), Gaps = 57/319 (17%)
Query: 720 RILEHK-RRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFC 778
+++E K +D +N KI SWNV G+RAW + KDG +++ ++F
Sbjct: 66 KVVEKKLETKDGRQFNLKISSWNVAGVRAWVK------------KDGVKWVKGESPDIFT 113
Query: 779 IQEIRCPLEKLPECPEG---YHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVV 834
+QE +C + +P+ + YH W + +G++GV + SK KP+ V G
Sbjct: 114 LQETKCSEKDIPQELKDLKEYHMSWNVAKSTKGFSGVGLFSKVKPLEVKFGI-------- 165
Query: 835 HTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAK 894
G EH + GR +T EY++FYLV+ Y P A+
Sbjct: 166 -------GVEEHDQE-----------------------GRTITAEYDKFYLVSTYVPNAQ 195
Query: 895 EDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE 954
L L +L WNS ++KSL+E KPVVL GD+NV+H+ ID+A P N +GF+ +E
Sbjct: 196 RGLKRLEYRLKWNSDFLAYIKSLDEKKPVVLCGDMNVSHHEIDLANPKGNKKNAGFSQEE 255
Query: 955 RNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSD 1012
R+ + L GF D +R LYP+ YT+W Y +K GWRLDYF++S + K ++ D
Sbjct: 256 RDGMTELLQSGFTDTYRDLYPDLTGQYTFWTYMGNCRAKNVGWRLDYFILSNKWKDNVCD 315
Query: 1013 LEIHGDVEGSDHAPQILYL 1031
I GSDH P L L
Sbjct: 316 NIIETSAMGSDHCPITLLL 334
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ +WNVNG+RA +NK F FM ++ C+QE + E+ G
Sbjct: 2 KLITWNVNGLRA--CMNKGFAD----------FMTAAGADIVCVQETKMQREQASFDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV SKT+P+ VT+G G EH D E
Sbjct: 50 YHEYWNSAVKKGYSGTAVFSKTEPLSVTYGL---------------GQEEH--DQE---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EY FYLVNVY P ++ L+ L ++ W + +
Sbjct: 89 -----------------GRVITAEYPDFYLVNVYTPNSQRGLTRLEYRMQWEDVFQDYCA 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GDLNVA ID+ P +N +GFT +ER F FLD GF+D R LYP
Sbjct: 132 GLARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQFLDHGFVDSFRSLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + + GWR+DYFL+S+ K + D+ IH +V GSDH P
Sbjct: 192 DKEGAYTWWSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVMGSDHCP 244
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 153/301 (50%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQK-DGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG RA LQ+K D +++ + FCIQE + ++
Sbjct: 2 KFISWNVNGFRA------------LQRKMDVNEWLKNTGADAFCIQETKLQRSQVDFQTA 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W+ ++GY+G A+++K KP+ VT+G G +E +
Sbjct: 50 DYLQYWYDAEKKGYSGTAIITKNKPLNVTYGI---------------GVDEFDHE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EYE +YL+ VY P A+ DL L +L W +
Sbjct: 90 ------------------GRVITLEYEDYYLMTVYTPNAQRDLKRLGFRLKWGQAFTNFI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPVV GDLNVAH ID+ P +N+ +GFT +ER FS LD GF+D R+L+
Sbjct: 132 DRLDRRKPVVFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSELLDTGFIDSFRYLH 191
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y ++ GWR+DYF+IS++LK + D +I DV GSDH P + L
Sbjct: 192 PDREGAYSWWSYMGNARARNVGWRIDYFVISERLKKRIKDAKILADVRGSDHCPVEIELA 251
Query: 1033 L 1033
L
Sbjct: 252 L 252
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 181 bits (460), Expect = 1e-42, Method: Composition-based stats.
Identities = 101/294 (34%), Positives = 151/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F + + ++FCIQE + E++P E
Sbjct: 2 KLISWNVNGIRACV-------------KNGFLDFFAKENADIFCIQETKVQEEQIPFRVE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ SK +P ++ +G G EH
Sbjct: 49 GYYQYWNFAQKKGYSGTAIFSKMEPNKIVYGM---------------GKEEHDQ------ 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+E+ ++Y+V VY P ++ L+ L ++ W +L
Sbjct: 88 -----------------EGRVITLEFGEYYVVTVYTPNSQRGLARLEYRMKWEEDFLNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L KPV++ GDLNVAH ID+ P TN +GF+ +ERN F ++ GF+D R Y
Sbjct: 131 KDLENSKPVIVCGDLNVAHTEIDLKNPSTNRKNAGFSAEERNKFDELMNNGFVDTFRFFY 190
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
PN YT+W Y ++ + GWR+DYF +S LK L + I+ +V GSDH P
Sbjct: 191 PNKTEAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQLKEAIIYKNVLGSDHCP 244
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K F F + D + FC+QE + +L EG
Sbjct: 2 KLISWNVNGLRA--CCDKGFREAF----------QTLDADFFCLQETKMQEGQLDLSFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ + KP+ VT+G + V H H
Sbjct: 50 YTSYWNYAEKKGYSGTAIFTHLKPLNVTYGLGIDV----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E + FYLV VY P +++ L L ++ W R +L
Sbjct: 88 ----------------EGRVITLEMDNFYLVTVYTPNSQDGLKRLDYRMTWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GDLNVAH ID+ P TN +GFT QER F LD GF+D R+ YP
Sbjct: 132 ELDKKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQILLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
IY++W Y + K GWR+DYFL S++L L +IH ++ GSDH P + LN+
Sbjct: 192 EQTGIYSWWSYRFKAREKNAGWRIDYFLASRRLADKLESAKIHTEIFGSDHCPVEVTLNV 251
>gi|336392108|ref|ZP_08573507.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length = 257
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 147/295 (49%), Gaps = 51/295 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + +K+ F Q D + FCIQE + ++ G
Sbjct: 5 KFISWNVNGLRA------------VVKKNFMEFFEQQDADFFCIQETKLQAGQIELTLPG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K +P+ VT+G G EH
Sbjct: 53 YYQYWNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVAEHDQ------- 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY+ FYL+ Y P ++ L L ++ W R ++
Sbjct: 91 ----------------EGRLITLEYKDFYLLTCYTPNSQTKLKRLDYRMSWEDAFRSYIS 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN+ KPV+ GDLNVAH ID+ TN +GF+ +ER FS L GF D R+ YP
Sbjct: 135 TLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQLLSAGFTDSFRYFYP 194
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ Y++W Y ++ GWR+DYF+ + QL+ L+D I DV GSDH P +L
Sbjct: 195 DQVTYSWWSYRFNARQNNAGWRIDYFVTADQLQPQLADAAILTDVLGSDHCPVML 249
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 172/343 (50%), Gaps = 72/343 (20%)
Query: 716 NDPFRILEHKRRQ-DQYPWN---------------FKIGSWNVNGIRAWSQVNKLFTSIF 759
++P+ +L HK+ Q D +N K+ +WNVNG+R + F+++
Sbjct: 241 SEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFES-FSALQ 299
Query: 760 LQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFWFPG-TRQGYAGVAV 813
L Q++ F ++ C+QE + ++ + E +GY H+FW ++ GY+G A+
Sbjct: 300 LAQRENF--------DILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAI 351
Query: 814 LSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG 873
+S+ KP+ V +G + G D E G
Sbjct: 352 ISRIKPLSVRYGTGLS-----------------GHDTE---------------------G 373
Query: 874 RVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVA 932
R++T E++ FYL+N Y P + + L LS ++ W+ L H+K L + KPVVL GDLN A
Sbjct: 374 RIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCA 433
Query: 933 HNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK 991
H ID+ P N +GFTI+ER F +N LD GF+D R +P YTYW Y K
Sbjct: 434 HEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRK 493
Query: 992 M-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+ + +++ D I D+ GSDH P L L L
Sbjct: 494 TNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F F D ++FC+QE +C ++ G
Sbjct: 2 KLISWNVNGIRA--CIGKGFEESFAAL----------DADIFCLQETKCQQGQVKLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G AV +K +P+ V +G G +H +
Sbjct: 50 YYQYWNYANRRGYSGTAVFTKKEPLSVVYGI---------------GIEKHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EYE+FYLV VY P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEYEKFYLVTVYTPNSQSELRRLEYRMHWEEDFLAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GD NVAH ID+ P TN +GFT +ER F L+ GF+D R+ YP
Sbjct: 132 KLQESKPVICCGDFNVAHQEIDLKNPKTNRKNAGFTDEERACFGKVLESGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYF+ S QLK L EIH ++ GSDH P L + L
Sbjct: 192 DVEGRYSWWSYRFKAREKNAGWRIDYFITSPQLKDKLKGAEIHSEIMGSDHCPVELQITL 251
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 152/290 (52%), Gaps = 52/290 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNGIRA V K F F Q+ G F FCIQE + ++ +GY+
Sbjct: 5 SWNVNGIRA--CVRKGFLDFF--QEMGADF--------FCIQESKLQEGQIQLDLDGYYQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P+ V +G ++S PE
Sbjct: 53 YWNYAERKGYSGTAIFTKWEPLHVFYG------------------------IDSNNYEPE 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GR++T+EYE FYLVNVY P +K DL+ L +L W L +L+ LN
Sbjct: 89 --------------GRIITLEYESFYLVNVYTPNSKRDLTRLEDRLEWEDRLFDYLQKLN 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH- 977
+ KP+V GDLNVAH+ ID+ TN G SGFT +ER+ S LD GF+D RH +P
Sbjct: 135 KKKPLVYCGDLNVAHHEIDLRNDKTNHGNSGFTKEERSKMSRLLDAGFVDTLRHFHPEAD 194
Query: 978 RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
I+T+W Y + GWR+DYF++S+QL L E+H V GSDH P
Sbjct: 195 DIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVLGSDHCP 244
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 143/270 (52%), Gaps = 41/270 (15%)
Query: 765 GF-SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF F D +VFCIQE + E+ +GY FW ++GY+GV +K +P+ V+
Sbjct: 4 GFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVS 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G +K EH + GRV+T E+E F
Sbjct: 64 YGIDIK---------------EHDKE-----------------------GRVITCEFESF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLVNVY P +++ LS LS ++ W + LK+L KPV++ GDLNVAHN ID+ P T
Sbjct: 86 YLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFL 1001
N +GF+ +ER FS L+ GF+D R+ YPN + YT+W Y + K GWR+DYFL
Sbjct: 146 NRKNAGFSDEERKKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFL 205
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
S LK+ L D I+ D+ GSDH P L L
Sbjct: 206 CSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 151/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + + + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKDFEQQF----------KDFNADFFCLQETKMQAGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G ++ +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPLSVTYGINI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P ++++L L ++ W + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDELRRLEYRMKWEEDFQSYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P TN +GFT +ER + L+ GF+D R LYP
Sbjct: 132 KLDETKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTELLNNGFIDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS++L+ L D +IH + GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLIDAKIHTETMGSDHCP 243
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 181 bits (459), Expect = 2e-42, Method: Composition-based stats.
Identities = 104/297 (35%), Positives = 152/297 (51%), Gaps = 54/297 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F + D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KALDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ +P+ V +G G+ EH
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVQPLSVAYGI---------------GAPEHD---------- 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
D+GRV+T+E+E+ YLV VY P AK L L ++ W R L +L
Sbjct: 87 -------------DEGRVITMEFEELYLVTVYTPNAKRALERLDYRMAWEDAFRAFLLNL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHKEIDLKNPKSNRHNAGFTDEERGKFGELLAAGFVDTFRALYPDR 193
Query: 978 R-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
R YT+W Y + GWR+DYFL+S++L+ ++ EIH D+ GSDH P L L+
Sbjct: 194 RGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRVAAAEIHADIFGSDHCPVSLTLS 250
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA QK F D + FCIQE + ++ G
Sbjct: 2 KFISWNVNGLRA------------CVQKGFLDFFNSIDADFFCIQESKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKNEPLSVSYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ FYLV Y P ++ +L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEYDNFYLVTCYTPNSQNELKRLPYRMQWEDDFREYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPVVL GDLNVAHN ID+ P TN +GF+ +ER + L GF D R+ YP
Sbjct: 132 TLDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF+ SK++ L IH DV GSDH P
Sbjct: 192 DAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVLGSDHCP 244
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 RLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GIPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LN
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIHADVLGSDHCPVELELNF 251
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA QK F D + FCIQE + ++ G
Sbjct: 2 KFISWNVNGLRA------------CVQKGFLDFFNSIDADFFCIQESKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKNEPLSVSYGI---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ FYLV Y P ++ +L L ++ W R +LK
Sbjct: 89 -----------------GRVITLEYDNFYLVTCYTPNSQNELKRLPYRMQWEDDFREYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPVVL GDLNVAHN ID+ P TN +GF+ +ER + L GF D R+ YP
Sbjct: 132 TLDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF+ SK++ L IH DV GSDH P
Sbjct: 192 DAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLQKAAIHTDVLGSDHCP 244
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 156/301 (51%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V F +F + D ++FC+QE + ++
Sbjct: 6 LKLISWNVNGLRA--AVKHGFLDVF----------NELDADMFCVQETKLQEGQIDLDLP 53
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G A+ +K +PV V++G +
Sbjct: 54 GYHQYWNYAEKKGYSGTAIFTKREPVAVSYGLGI-------------------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE +GRV+T+EYE+F+LV Y P ++ +L L ++ W+ R ++
Sbjct: 88 --PEFDQ----------EGRVITLEYEEFFLVTCYTPNSQPELRRLDYRMNWDDAFRAYV 135
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L + KPV+ GDLNVAH ID+ TN +GFT +ER F+ L GF D +R+ Y
Sbjct: 136 KQLADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELLQSGFTDTYRYFY 195
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ + GWR+DYF+ S+ L L+D +IH ++ GSDH P L LN
Sbjct: 196 PDKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTEIFGSDHCPIELDLN 255
Query: 1033 L 1033
L
Sbjct: 256 L 256
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 159/304 (52%), Gaps = 58/304 (19%)
Query: 736 KIGSWNVNGIRA-WSQ-VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
K+ SWNVNG RA W + + F S+ + ++FC+QEI+ ++ +
Sbjct: 2 KLISWNVNGYRAVWKKGFKEAFDSL--------------NADIFCLQEIKMKENQMTDEM 47
Query: 794 E--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
E GYH + + + GY+G V +KT+P+ V+ G G +EH +
Sbjct: 48 EIEGYHRYSYSANKAGYSGTLVYTKTEPIGVSFGI---------------GIDEHDT--- 89
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
+GRV+T EYE F+LVNVY P +K+ L L +++W
Sbjct: 90 --------------------EGRVITCEYEDFFLVNVYTPNSKQKLERLDYRMVWEDEFH 129
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+L L + KPV++ GDLNVAHN ID+ P +N +GFT +ERN S L+ G++D R
Sbjct: 130 NYLNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFR 189
Query: 972 HLYPNHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ YP+ Y+YW Y+ + + GWR+DYF++S LK +L D +IH + GSDH P L
Sbjct: 190 YFYPDKTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIHQSIMGSDHCPVEL 249
Query: 1030 YLNL 1033
+N
Sbjct: 250 EINF 253
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F IF ++ D ++FCIQE + ++ +G
Sbjct: 3 KLISWNVNGLRA--CVGKGFLDIF----------KELDADIFCIQESKLQGGQIDLELDG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+ VT+G ++ H H
Sbjct: 51 YYQYWSYAEKKGYSGTALFTKEEPLSVTYGLGIEA----HDH------------------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E+ +Y++ Y P +++ L+ L ++ W +LK
Sbjct: 89 ----------------EGRVITAEFPDYYVITCYTPNSQDGLARLPYRMQWEDDFLSYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P +N +GFT +ER F+ L+ GF+D +RH YP
Sbjct: 133 KLEEHKPVIFCGDLNVAHREIDLKNPKSNRKNAGFTDEERGKFTQLLESGFIDTYRHFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF +SK L+ L IH ++ GSDH P
Sbjct: 193 DQEGIYSWWSYRFKAREKNAGWRIDYFCVSKALEDRLESAMIHTEIMGSDHCP 245
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC BAA-613]
Length = 251
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R+ + +VFCIQE + ++ G
Sbjct: 3 KLISWNVNGLRA--CVGKGF----------LDFFREAEADVFCIQESKLQEGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +PV V++G M+ EH ++
Sbjct: 51 YHQYWNYARKKGYSGTAMFTKEEPVSVSYGIGME---------------EHDTE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+ ++Y+V Y P +++ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITAEFPEYYVVTCYTPNSQDGLARLDYRMKWEDDFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVV GDLNVAH ID+ P TN +GFT +ER F++ L GF+D R+ YP
Sbjct: 133 KLEENKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLAAGFVDTFRYFYP 192
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + +K GWR+DYF +S+ LK L IH V GSDH P
Sbjct: 193 DLEGTYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVMGSDHCP 245
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 155/297 (52%), Gaps = 52/297 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA FL+ + + D ++F IQE + ++ EGY
Sbjct: 5 SWNVNGLRA------CLGKGFLE------YFKDVDADIFAIQETKLQEGQVELELEGYEQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G AV +K P+ V +G ++ EH ++
Sbjct: 53 YWNYAVKKGYSGTAVFTKISPLSVAYGIDIE---------------EHDAE--------- 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T+E+E FY VNVY P ++ L+ L ++ W R +L L+
Sbjct: 89 --------------GRVITLEFENFYFVNVYVPNSQRGLTRLDYRMKWEDDFREYLIKLD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
IKPV+ GD NVAH ID+ P +N +GFT +ER + L+ GF+D R+LYP+ +
Sbjct: 135 GIKPVICCGDKNVAHQEIDLKNPKSNRKNAGFTDEERQKMTELLNSGFIDAFRYLYPDKK 194
Query: 979 -IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YT+W Y + K GWR+DYF++S++LK + D+EIH V GSDH P +L +++
Sbjct: 195 DAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVMGSDHCPVLLDIDI 251
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 251
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 152/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + E++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------NELDADIFCLQETKLQPEQISLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAVFTRIKPLSVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVCCYTPNSQRELARLEYRMAWEDAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P TN +GF+ +ER + L GF D RHLY
Sbjct: 131 LELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L ++
Sbjct: 191 PDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFGSDHCPVELDID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|420145437|ref|ZP_14652903.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402932|gb|EJN56217.1| Exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 254
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 147/295 (49%), Gaps = 51/295 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + +K+ F Q D + FCIQE + ++ G
Sbjct: 2 KFISWNVNGLRA------------VVKKNFMEFFEQQDADFFCIQETKLQAGQIELTLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K +P+ VT+G G EH
Sbjct: 50 YYQYWNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVAEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY+ FYL+ Y P ++ L L ++ W R ++
Sbjct: 88 ----------------EGRLITLEYKDFYLLTCYTPNSQTKLKRLDYRMSWEDAFRSYIS 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN+ KPV+ GDLNVAH ID+ TN +GF+ +ER FS L GF D R+ YP
Sbjct: 132 TLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQLLAAGFTDSFRYFYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ Y++W Y ++ GWR+DYF+ + QL+ L+D I DV GSDH P +L
Sbjct: 192 DQVTYSWWSYRFNARQNNAGWRIDYFVTADQLQPQLADAAILTDVLGSDHCPVML 246
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 154/294 (52%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 10 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 57
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W T++GY+GVAV +K KP+ VT+G G +EH ++
Sbjct: 58 YYDYWNYATKKGYSGVAVFTKDKPINVTYGI---------------GIDEHDNE------ 96
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW-NSFLRGHL 914
GRV+T EY++FYL+ Y P ++ L+ L ++ W ++FL L
Sbjct: 97 -----------------GRVITAEYDEFYLITCYTPNSQRGLTRLDYRMTWEDAFLDYAL 139
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L E KPV+ GDLNVAH ID+ P TN +GFT +ER L GF+D R LY
Sbjct: 140 K-LEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKMDIILSSGFVDSFRLLY 198
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y +K GWR+DYF++S +LK + + +IH +V GSDH P
Sbjct: 199 PDKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVLGSDHCP 252
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + D ++FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--AVKKGFMDYF----------NEADADIFCLQETKLQEGQIELDLNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+RV +G S+ EH +
Sbjct: 50 YYDYWNYAVKKGYSGTAIFTKKEPLRVFYGLSVA---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+EQFY + VY P ++ +L+ L+ ++ + ++K
Sbjct: 89 -----------------GRVITLEFEQFYFITVYTPNSQPELARLAYRMSFEEAFLNYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPV+ GDLNVAH ID+ P TN GF+ +ER F+ L+ GF+D RH YP
Sbjct: 132 NLDQEKPVIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEERGKFTTVLESGFVDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + ++ GWR+DYF++S +L+ L D +IH DV GSDH P L ++L
Sbjct: 192 EKEGAYSWWSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIHADVLGSDHCPVELTIDL 251
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 160/300 (53%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------DSVDADIFCLQETKLQAGQIDLDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKKEPLSVQYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEKFFMVTVYTPNSQAELKRLDYRMTFEDAILAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPVVL GDLNVAH ID+ P TN +GF+ +ER F+ FL+ GF+D R+ YP
Sbjct: 132 KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGFVDSFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK +L D +IH DV GSDH P L LN+
Sbjct: 192 DLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVLGSDHCPVELELNI 251
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 3 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W T++GY+GVAV +K KP+ VT+G G +EH ++
Sbjct: 51 YYDYWNYATKKGYSGVAVFTKDKPINVTYGI---------------GIDEHDNE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EY++FYL+ Y P ++ L+ L ++ W ++
Sbjct: 90 -----------------GRVITAEYDEFYLITCYTPNSQRGLTRLDYRMTWEDAFLDYVL 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER L GF+D R LYP
Sbjct: 133 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKMDIILSSGFVDSFRVLYP 192
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y +K GWR+DYF++S +LK + + +IH +V GSDH P
Sbjct: 193 DKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVLGSDHCP 245
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 159/301 (52%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
++ SWNVNG+RA K GF + + D ++FC+QE + ++
Sbjct: 2 RLISWNVNGLRA-------------AVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 49 AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GIPEHDTE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++
Sbjct: 89 ------------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L+ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ Y
Sbjct: 131 KNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LN
Sbjct: 191 PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELN 250
Query: 1033 L 1033
Sbjct: 251 F 251
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 156/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +NK F F R+ D ++FC+QE + + G
Sbjct: 2 KFVSWNVNGLRA--CLNKGF----------LDFFREADADIFCLQETKMQEGQAELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K +P+ V +
Sbjct: 50 YLQYWNSAEKKGYSGTAVFTKKEPLSVCY------------------------------- 78
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
I++ D +G +GR +T+E+E FYLVNVY P ++ +L L ++ W + R ++
Sbjct: 79 -----DIRHPDHTG--EGRAITLEFESFYLVNVYTPNSQRELVRLPYRMEWENAFREYVT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ +N+G +GF+ +ER + L GFLD R LYP
Sbjct: 132 QLDEKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGKLTELLASGFLDSFRELYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ YT+W Y + GWR+DYFLIS++L+ LSD I+ +V+GSDH P L L
Sbjct: 192 DLTGAYTWWSYMFKARQNNAGWRIDYFLISERLREKLSDSLIYSEVQGSDHCPVGLIL 249
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 180 bits (457), Expect = 3e-42, Method: Composition-based stats.
Identities = 107/298 (35%), Positives = 152/298 (51%), Gaps = 54/298 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPEGYH 797
SWNVNG+RA + K F F++ D +VF +QE + P + + + P GY
Sbjct: 7 SWNVNGLRAC--LKKGFMESFVKL----------DADVFALQETKMQPEQAILDLP-GYR 53
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+W R+GY+G AV S+ +P+ VT+G G EH +
Sbjct: 54 QYWNSAERKGYSGTAVFSRIEPLAVTYGL---------------GIEEHDHE-------- 90
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
GRV+T+E+ Y V VY P +K L L+ ++ W R +L +L
Sbjct: 91 ---------------GRVITLEFPDCYFVTVYTPNSKRGLERLAYRMEWEDAFRAYLVAL 135
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
+ KPV++ GDLNVAH ID+ P TN +GFT +ER F+ LD GF+D R LYP+
Sbjct: 136 DAKKPVIVCGDLNVAHTEIDLKNPKTNHHNAGFTDEERGKFTELLDAGFIDTFRALYPDR 195
Query: 978 R-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
IYT+W Y + GWR+DYF+ S +L+ ++D IH +V GSDH P L L L
Sbjct: 196 TGIYTWWSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNEVFGSDHCPVGLELRL 253
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 151/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA K F ++FCIQE + ++ EG
Sbjct: 2 KLVSWNVNGIRA------------CLAKGFMDFFNSVSADIFCIQETKVQQGQVQLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ ++ KP+ V G M NEH
Sbjct: 50 YYQYWNYAIRKGYSGTALFTREKPLSVVDGIGM---------------NEHD-------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T EY++FYLV VY P ++ L+ L ++ W R +LK
Sbjct: 87 ---------------NEGRVLTAEYDKFYLVTVYTPNSQRGLTRLDYRMKWEDDFREYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P N +GFT +ER + + GF D R+LYP
Sbjct: 132 RLDTTKPVIICGDLNVAHREIDIKNPEANRRNAGFTDEEREKMTMLIQSGFTDSFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W Y ++ K GWR+DYFL+S +++ + D ++ ++ GSDH P L +++
Sbjct: 192 DKTDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRDAGMYSEIYGSDHCPVFLEIDI 251
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 154/297 (51%), Gaps = 54/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPE 794
K+ SWNVNG+RA V K F ++++++ + ++FC+QE + + L E E
Sbjct: 2 KLISWNVNGLRA--CVTKGF----------YTYLKETNPDIFCVQETKLQEGQILMENME 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K KP+ V +G
Sbjct: 50 EYTQYWNYAEKKGYSGTAIFTKFKPLSVHYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ +G +GR +T+E+E+FYLVNVY P K DLS L +L W R +L
Sbjct: 82 -----------EENGEPEGRTITLEFERFYLVNVYTPNTKRDLSRLPYRLEWEDRFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV++ GDLNVAH ID+ N G +GFT +ER S L GF+D RH Y
Sbjct: 131 QQLDASKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ +Y++W Y + + GWR+DYFL+S +L+ L D I + GSDH P IL
Sbjct: 191 PDRTDVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCHITGSDHCPVIL 247
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 151/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF F + + ++F IQE + E+ E
Sbjct: 2 KLVSWNVNGLRA-------------CMKKGFKEFFNEMNADLFAIQETKMQEEQKTFDFE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH FW ++GY+G + SK KP+ V +G GS +
Sbjct: 49 GYHEFWNCADKKGYSGTLIYSKQKPLNVVYGID--------------GSKYN-------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D+GR++T+E++ F+ V Y P ++ L+ L ++ + R +L
Sbjct: 87 ----------------DEGRIITLEFKNFFFVTAYVPNSQRSLARLDYRMEFEDDFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+ +KPV++ GDLNVAH ID+ P N +GFTI+ER + + LD GF D +R+L+
Sbjct: 131 KKLDSLKPVIMCGDLNVAHREIDLTNPKNNEKNAGFTIEERRKYQSLLDEGFTDSYRYLH 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P Y++W Y ++ + GWR+DYF+IS +L+ L+D IH EGSDH P
Sbjct: 191 PEKVEYSWWSYMFNARKRNIGWRIDYFVISNKLRGQLNDSIIHTQTEGSDHCP 243
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF + D + FC+QEI+ ++ +G
Sbjct: 2 KFVSWNVNGLRAVRE--KGFEDIF----------KNFDADAFCLQEIKLQENQIELHFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP+ V +G G EH DME
Sbjct: 50 YYEYWNYANKKGYSGTAIYTKHKPIDVHYGL---------------GIEEH--DME---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EYE +Y+ VY P A+ +L+ L+ + W R + K
Sbjct: 89 -----------------GRLITLEYENYYIATVYTPNAQPELARLAYRQKWEDDFREYFK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P N GF+ +ER F+ FL+ GF+D R++YP
Sbjct: 132 KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTIFLNAGFIDTFRYIYP 191
Query: 976 NHRI-YTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ GWR+DYF +S +LK L IH DV GSDH P
Sbjct: 192 DKTDEYSWWSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIHQDVMGSDHCP 244
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme DSM
15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme DSM
15981]
Length = 251
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F ++ D +VFC+QE + ++ G
Sbjct: 3 KLISWNVNGLRA--CVGKGFLDYF----------KEADADVFCLQETKLQEGQIDLDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +PV V +G G EH DME
Sbjct: 51 YHQYWNYAQKKGYSGTAMFTKEEPVSVRYGL---------------GIEEH--DME---- 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+ E++++++V Y P +++ L+ L ++ W + +LK
Sbjct: 90 -----------------GRVIAAEFQEYFVVTCYTPNSQDGLARLDYRMEWENAFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P +N +GFT +ER F++ L GF+D R+ YP
Sbjct: 133 KLEEEKPVIFCGDLNVAHKEIDLKNPKSNRKNAGFTDEERGKFTDLLGAGFIDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF S+ LK L +IH +V GSDH P
Sbjct: 193 DREGIYSWWSYRFSARAKNAGWRIDYFCASESLKDRLVSADIHTEVMGSDHCP 245
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 155/302 (51%), Gaps = 54/302 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--CP 793
K+ SWNVNG RA + +K + ++FC+QEI+ ++ +
Sbjct: 2 KLISWNVNGYRA------------VMKKGFMDAFNSLNADIFCLQEIKMKENQMTDEMNI 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGYH + + + GY+G V +K +P+ V+ G G +EH +
Sbjct: 50 EGYHRYSYSANKAGYSGTLVYTKVEPIGVSFGI---------------GIDEHDT----- 89
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GRV+T EYE F+LVNVY P +K+ L L +++W +
Sbjct: 90 ------------------EGRVITCEYEDFFLVNVYTPNSKQKLERLDYRMVWEDEFHNY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L + KPV++ GDLNVAHN ID+ P +N +GFT +ERN S L+ G++D R+
Sbjct: 132 LNILRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFRYF 191
Query: 974 YPNHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y+YW Y+ + + GWR+DYF++S LK +L D +IH + GSDH P L +
Sbjct: 192 YPDKTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIHQSIMGSDHCPVELEI 251
Query: 1032 NL 1033
N
Sbjct: 252 NF 253
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 153/297 (51%), Gaps = 54/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA VNK F F + D ++FC+QE + ++ E E
Sbjct: 2 KLISWNVNGLRA--CVNKGFLDYF----------KASDADIFCVQETKLQEGQIGIELGE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ ++ +P V +G ME
Sbjct: 50 PYRKYWNYAEKKGYSGTAIFTRIEPQSVRYG------------------------MEE-D 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ PE GR++T+E+E FYLV VY P AK DLS L +L W R +L
Sbjct: 85 AEPE--------------GRIITLEFESFYLVTVYTPNAKRDLSRLEYRLEWEERFRRYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV++ GDLNVAH ID+ +N G SGFT +ER+ + L+ GF+D RH Y
Sbjct: 131 QELDAHKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERDKMTRLLEAGFIDTFRHRY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ YT+W + + + GWR+DYFL+S +L + D +I + GSDH P IL
Sbjct: 191 PDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLNDFIKDAKIDAAITGSDHCPVIL 247
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 143/270 (52%), Gaps = 41/270 (15%)
Query: 765 GF-SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF F D +VFCIQE + E+ +GY FW ++GY+GV +K +P+ V+
Sbjct: 4 GFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVS 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G M+ EH + GRV+T E+E F
Sbjct: 64 YGIDME---------------EHDKE-----------------------GRVITCEFESF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLVNVY P +++ LS LS ++ W + LK+L KPV++ GDLNVAHN ID+ P T
Sbjct: 86 YLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFL 1001
N +GF+ +ER F+ L+ GF+D R+ YPN + YT+W Y + K GWR+DYFL
Sbjct: 146 NRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFL 205
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
S LK+ L D I+ D+ GSDH P L L
Sbjct: 206 CSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 180 bits (456), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 150/275 (54%), Gaps = 40/275 (14%)
Query: 761 QQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPV 820
Q+ D ++ + ++FC+QEI+ ++ EGY+ +W ++GY+G A+ SK +P+
Sbjct: 8 QKVDFLEYLEESSADIFCLQEIKLQEGQIDLNLEGYYTYWNYAVKKGYSGTAIFSKKEPL 67
Query: 821 RVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY 880
VT+G G EH +GR++T+E+
Sbjct: 68 SVTYGL---------------GIEEHDQ-----------------------EGRLITLEF 89
Query: 881 EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVAL 940
E FY++ +Y P +K L L ++ W R ++K L+E K V+ GDLNVAH ID+
Sbjct: 90 EDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKTVIFCGDLNVAHKEIDLKN 149
Query: 941 PLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLD 998
P +N GF+ +ER F+ L+ GF+D +R+LYPN Y++W Y +K GWRLD
Sbjct: 150 PKSNRKNPGFSDEEREKFTCILEEGFVDTYRYLYPNQEGAYSWWSYRMGARAKNIGWRLD 209
Query: 999 YFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YF++S+++K +++++I+ +V GSDH P LY+N
Sbjct: 210 YFVVSERMKDQITEVKINSEVMGSDHCPVELYINF 244
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 148/299 (49%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA +K + Q D + F IQE +C ++ +G
Sbjct: 2 KFVSWNVNGIRA------------CVKKGFLDYFHQVDADFFAIQETKCQKGQIELQLDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K P+ V +G G D+
Sbjct: 50 YEQYWNDAERKGYSGTAIFTKHTPLSVQYGI--------------------GEDL----- 84
Query: 856 HPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
ID +GRV+ +EY +FYLV Y P +K DLS L +L W +L
Sbjct: 85 --------------IDQEGRVIALEYSKFYLVTCYTPNSKRDLSRLPYRLSWEEHFLAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L E KPV+L GDLNVAH ID+ +N G SGFT +ER + L GF D R+LY
Sbjct: 131 KNLEEKKPVILCGDLNVAHTEIDLKNAKSNHGNSGFTQEERGKMTTLLSSGFTDSFRYLY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P Y++W Y ++ + GWR+DYF++S +L + + EIH ++ GSDH P L L
Sbjct: 191 PETTDKYSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEILGSDHCPVFLEL 249
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + +++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------NELDADIFCLQETKLQPDQISLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAVFTRIKPLSVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P TN +GF+ +ER + L GF D RHLY
Sbjct: 131 LELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L ++
Sbjct: 191 PDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFGSDHCPVELVID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF + D + FC+QEI+ ++ +G
Sbjct: 2 KFVSWNVNGLRAVRE--KGFEDIF----------KNFDADAFCLQEIKLQENQIELHFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP+ V +G G EH DME
Sbjct: 50 YYEYWNYANKKGYSGTAIYTKHKPIDVHYGL---------------GIEEH--DME---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EYE +Y+ VY P A+ +L+ L+ + W R + K
Sbjct: 89 -----------------GRLITLEYENYYIATVYTPNAQPELARLAYRQKWEDDFREYFK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P N GF+ +ER F+ FL+ GF+D R+ YP
Sbjct: 132 KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTMFLNSGFIDTFRYFYP 191
Query: 976 NHRI-YTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ GWR+DYF +S +LK L IH DV GSDH P
Sbjct: 192 DKTDEYSWWSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIHQDVMGSDHCP 244
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 149/294 (50%), Gaps = 55/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNV--FCIQEIRCPLEKLPECP 793
K SWNVNG+RA V K F F DLN FC+QE + +L
Sbjct: 2 KFISWNVNGLRA--CVGKDFEQQF------------KDLNADFFCLQETKMQAGQLDLSF 47
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY ++W ++GY+G A+ +K KP+ VT+G + +EH +
Sbjct: 48 PGYESYWNYADKKGYSGTAIYTKHKPLNVTYGIDI---------------DEHDHE---- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T+E + FYL+ VY P +++ L L ++ W + +
Sbjct: 89 -------------------GRVITLEMDDFYLITVYTPNSQDGLRRLDYRMKWEEDFQAY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L+ IKPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R L
Sbjct: 130 LHRLDAIKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKMTQLLSNGFIDTFRTL 189
Query: 974 YPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP Y++W Y R K GWR+DYFLIS++LK L D +IH ++ GSDH P
Sbjct: 190 YPEKVTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIMGSDHCP 243
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F F + D +V C+QE + E+ G
Sbjct: 2 KLISWNVNGLRA--CIGKGF----------LDFCKSADADVICLQETKMKPEQADFDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW + GY+G AV ++ P+ +T+ F GG + H
Sbjct: 50 YEKFWNSADKPGYSGTAVFTRVPPLNMTYDF----GGDEYRH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E+E+FYLV Y P A+++L + ++ W R +L+
Sbjct: 88 ----------------EGRVITAEFEEFYLVCCYTPNAQDELRRIDYRMRWEDDFRDYLR 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ +KPVVL GDLNVAH ID+ P TN G +GF+ QER + L GF D R LYP
Sbjct: 132 ELDRVKPVVLCGDLNVAHEEIDLKNPKTNRGHAGFSDQERGKMTELLSTGFSDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y R K GWR+DYF++S++ + + D I V GSDH P L L L
Sbjct: 192 EKIAYSWWSYRFRAREKNAGWRIDYFIVSRRFQEKVVDSLICDQVFGSDHCPVGLELEL 250
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF + D + FC+QEI+ ++ +G
Sbjct: 2 KFVSWNVNGLRAARE--KGFDEIF----------KNFDADFFCLQEIKLQEGQIDMDMDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+++W R+GY+G A+ ++ +P+ V +G G EH
Sbjct: 50 YYSYWNYAKRKGYSGTAIFTRIEPIDVFYGL---------------GKEEHD-------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR++T+EY +FY+ VY P +K++L L + W R K
Sbjct: 87 ---------------DEGRLITLEYPEFYVSTVYTPNSKQELLRLDYRQEWEDEFREFFK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV++ GD+NVAH ID+ P TN GFT +ER F+ LD GF D R+ YP
Sbjct: 132 NLDAKKPVIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKFTLLLDAGFTDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y ++ GWR+DYFL+S +L+ L+ IH DV GSDH P + L+L
Sbjct: 192 DKENEYSWWSYRFNARKNNTGWRIDYFLVSDRLQEKLTAASIHQDVFGSDHCPVSVELSL 251
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 154/302 (50%), Gaps = 54/302 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECP 793
K+ SWNVNG+RA V K F F + D ++FC+QE + P + E P
Sbjct: 1 MKVISWNVNGLRA--AVTKGFIDSF----------NELDADIFCLQETKLQPHQIELELP 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY FW ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 -GYEQFWNSAVKKGYSGTAVFTRIKPIAVTNGI---------------GIEEHDQE---- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +
Sbjct: 89 -------------------GRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRAY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L++ KPV+L GDLNVAHN ID+ P TN +GF+ +ER + L+ GF D R+L
Sbjct: 130 LLELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLESGFTDTFRYL 189
Query: 974 YPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L +
Sbjct: 190 YPDAVDEYSWWSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIHQQIFGSDHCPVELDI 249
Query: 1032 NL 1033
L
Sbjct: 250 EL 251
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 162/302 (53%), Gaps = 56/302 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNG+RA K GF + D ++FC+QE + ++ + P
Sbjct: 2 KLISWNVNGLRA-------------AVKKGFLEYFESVDADIFCLQETKLQAGQIDLDLP 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y +W ++GY+G A+ +K +P+ V +G +
Sbjct: 49 E-YKDYWNYAVKKGYSGTAIFTKIEPISVRYGLDI------------------------- 82
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
P H +GRV+T+E+E+F+++ VY P ++ +L L ++ + + +
Sbjct: 83 PEHDT-------------EGRVITLEFEKFFMITVYTPNSQAELKRLDYRMTFEDAILTY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+K L+E KPVVL GDLNVAH ID+ P TN +GF+ +ER F+ FL+ GF+D R+
Sbjct: 130 VKKLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTTFLEAGFVDSFRYF 189
Query: 974 YPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y++W Y + ++ GWR+DYF++S++LK +L D +IH DV GSDH P L L
Sbjct: 190 YPDLEGAYSWWSYRMNARAQNTGWRIDYFVVSERLKDNLVDAKIHLDVLGSDHCPVELEL 249
Query: 1032 NL 1033
N+
Sbjct: 250 NI 251
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 160/301 (53%), Gaps = 53/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ PE
Sbjct: 2 KLISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQSGQIDLNPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ +K +P+ VT+G G EH +
Sbjct: 50 EYYTYWNYAVKKGYSGTAIFTKKEPLSVTYGL---------------GIEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E F+++ +Y P +K L L ++ W R ++
Sbjct: 90 ------------------GRVITLEFEDFHMITLYTPNSKRGLERLDYRMKWEDDFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L++ KPV+ GDLNV+H ID+ P +N GF+ +ER F+ L+ GF+D +R LY
Sbjct: 132 KRLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEEREKFTKILEEGFVDTYRFLY 191
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y +K GWRLDYF+ S++LK ++D +I+ ++ GSDH P L+++
Sbjct: 192 PEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITDAKINSEIMGSDHCPVELHMD 251
Query: 1033 L 1033
Sbjct: 252 F 252
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC 27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 179 bits (455), Expect = 6e-42, Method: Composition-based stats.
Identities = 107/300 (35%), Positives = 154/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F F + D ++FCIQE + +L G
Sbjct: 2 KLISWNVNGIRAC--VTKGF----------MDFFNEIDADIFCIQESKMQEGQLELEMPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+ V +G +G H H
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKKEPMDVKYG----IGIEEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+E FY+V Y P ++ +L L ++ W + +LK
Sbjct: 88 ----------------EGRVITLEFEDFYMVTCYTPNSQNELKRLDYRMQWEDDFKAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPVVL GDLNVAH ID+ P TN +GFT +ER + LD GF+D R+ YP
Sbjct: 132 KLEESKPVVLCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMTKLLDDGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYF++S+ LK L +IH ++ GSDH P L LN+
Sbjct: 192 DLEGKYSWWSYRFKAREKNAGWRIDYFIVSEALKDKLEGADIHTEILGSDHCPIELDLNI 251
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 179 bits (455), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA T F+ F ++ D ++FCIQE + +L G
Sbjct: 2 KMVSWNVNGIRA------CMTKGFM------DFFQEIDADIFCIQETKMQPGQLDIVTPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V +K KP+ VT ++ G +EH +
Sbjct: 50 YYQYMNSADKKGYSGTMVFTKEKPIAVT---------------YDLGIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EYE FYLV VY P +K+ L L ++ W R +L
Sbjct: 89 -----------------GRVITCEYENFYLVCVYTPNSKDGLLRLDYRMQWEDDFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L E K V++ GDLNVAH ID+ P TN +GFT +ER + GF+D R+LYP
Sbjct: 132 ALKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAKMTTLQQSGFIDSFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL+S+ K + + IH DV GSDH P
Sbjct: 192 EQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKDKIQEASIHTDVFGSDHCP 244
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 143/270 (52%), Gaps = 41/270 (15%)
Query: 765 GF-SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF F D +VFCIQE + E+ +GY FW ++GY+GV +K +P+ V+
Sbjct: 4 GFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVS 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G ++ EH + GRV+T E+E F
Sbjct: 64 YGIDIE---------------EHDKE-----------------------GRVVTCEFESF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLVNVY P +++ LS LS ++ W + LK+L KPV++ GDLNVAHN ID+ P T
Sbjct: 86 YLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFL 1001
N +GF+ +ER FS L+ GF+D R+ YPN + YT+W Y + K GWR+DYFL
Sbjct: 146 NRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFL 205
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
S LK+ L D I+ D+ GSDH P L L
Sbjct: 206 CSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 148/307 (48%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 45 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 92
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 93 ELPGLSHQYWSAPSDKEGYSGVGILSRQCPLKVSYGI---------------GEEEH--D 135
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ EY+ F LV Y P A L L + W+
Sbjct: 136 QE---------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 174
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK + KP+VL GDLNVAH ID+ P N +GFT QER F L + +D
Sbjct: 175 FRKFLKGVASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLVD 234
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 235 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKALGSDHCP 294
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 295 ITLYLAL 301
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 9 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 56
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVAV +K KP+ VT+G G EH
Sbjct: 57 YYDYWNYAQKKGYSGVAVFTKDKPLNVTYGI---------------GIEEHD-------- 93
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T EYE FYL+ Y P ++ L+ L ++ W ++
Sbjct: 94 ---------------NEGRVITAEYEDFYLITCYTPNSQRGLTRLDYRMTWEDAFLSYIL 138
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER L GF D R LYP
Sbjct: 139 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDVILTSGFCDSFRVLYP 198
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y +K GWR+DYF++S +LK + + +IH D+ GSDH P
Sbjct: 199 DKTDAYSWWSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSDILGSDHCP 251
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 179 bits (454), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA ++K F F D ++FCIQE + ++ G
Sbjct: 2 KLISWNVNGLRA--CLSKGFED----------FFNTADADIFCIQETKMHPDQAEIGLIG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV ++ P+ VT+G +++ EH +
Sbjct: 50 YEKYWNSAVKKGYSGTAVFTRITPLSVTYGLNIE---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+E+E F+LVNVY P +K +L L ++ W R +L
Sbjct: 89 -----------------GRIITLEFEDFFLVNVYTPNSKRELLRLDYRMRWEDEFRTYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPV++ GD+NVAH ID+ P TN +GFT +ER+ + L+ GF D RH+YP
Sbjct: 132 ALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTALLEAGFTDTFRHIYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + ++ GWR+DYFL+S L+ + + I+ DV GSDH P
Sbjct: 192 DKIDAYTWWSYMMNARARNIGWRIDYFLVSNTLRDAIKEATIYPDVMGSDHCP 244
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 179 bits (454), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E++ F LV Y P A L L + W
Sbjct: 152 --DQE---------------------GRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 154/302 (50%), Gaps = 54/302 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECP 793
K+ SWNVNG+RA V K F F + D ++FC+QE + P + E P
Sbjct: 1 MKLISWNVNGLRA--AVTKGFIDSF----------NELDADIFCLQETKLQPHQIELELP 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY FW ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 -GYEQFWNSAVKKGYSGTAVFTRIKPIAVTNGI---------------GIEEHDQE---- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +
Sbjct: 89 -------------------GRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRAY 129
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L++ KPV+L GDLNVAHN ID+ P TN +GF+ +ER + L+ GF D R+L
Sbjct: 130 LLELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLESGFTDTFRYL 189
Query: 974 YPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L +
Sbjct: 190 YPDAVDEYSWWSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIHQQIFGSDHCPVELDI 249
Query: 1032 NL 1033
L
Sbjct: 250 EL 251
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E++ F LV Y P A L L + W
Sbjct: 152 --DQE---------------------GRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 51/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F K+ F+ + D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKNF-------KEDFAAL---DADFFCLQETKMQEGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT G G +EH +
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHKPLTVTTGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P ++++L L+ ++ W + + +L
Sbjct: 89 -----------------GRVITLEMDDFYLVTVYTPNSQDELKRLAYRMQWETDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P TN +GF+ +ER + L+ GF D R+LYP
Sbjct: 132 KLDEHKPVIVCGDMNVAHEEIDLKNPKTNHHNAGFSDEEREKMTILLNNGFTDTFRYLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y + K GWR+DYFLIS +L+ L D +IH ++ GSDH P L L
Sbjct: 192 EQVTYSWWSYRFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTEIFGSDHCPVELTL 248
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + +++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------NELDADIFCLQETKLQPDQISLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAVFTRIKPLSVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVCCYTPNSQRELARLEYRMAWEDAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P TN +GF+ +ER + L GF D RHLY
Sbjct: 131 LELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L ++
Sbjct: 191 PDAIEEYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFGSDHCPVELDID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA QK F + + ++FCIQE + ++ +G
Sbjct: 2 KLISWNVNGIRA------------CVQKGFLDFFNEVNADIFCIQESKLQEGQINLELKG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLSVRYGL---------------GIEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E F+++ VY P ++ +L+ L ++ W + +LK
Sbjct: 89 -----------------GRVITLEFEDFFMITVYTPNSQNELARLDYRMKWEDDFKKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ P TN +GFT +ER ++ L+ GF+D R+ YP
Sbjct: 132 HLEKSKPVIVCGDLNVAHKEIDLKNPTTNRKNAGFTDEEREKLTSLLNDGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYF++S+ LK L +IH +V GSDH P
Sbjct: 192 ETTGVYSWWSYRFNARKNNAGWRIDYFVVSESLKDRLESAKIHTEVLGSDHCP 244
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2 [Felis
catus]
Length = 404
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 148/307 (48%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 148 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 195
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 196 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 238
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ E++ F LV Y P A L L + W+
Sbjct: 239 QE---------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEA 277
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L+ + D
Sbjct: 278 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLEAVPLAD 337
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 338 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 397
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 398 ITLYLAL 404
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 143/270 (52%), Gaps = 41/270 (15%)
Query: 765 GF-SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF F + +VFCIQE + E+ +GY FW ++GY+GV +K +P+ V+
Sbjct: 4 GFMDFFNSVNADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTFTKKEPLSVS 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G +K EH + GRV+T E+E F
Sbjct: 64 YGIDIK---------------EHDKE-----------------------GRVVTCEFESF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLVNVY P +++ LS LS ++ W R LK+L KPV++ GDLNVAHN ID+ P T
Sbjct: 86 YLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPVIVCGDLNVAHNEIDLENPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFL 1001
N +GF+ +ER F+ L+ GF+D R+ YPN + YT+W Y + K GWR+DYFL
Sbjct: 146 NRKNAGFSDEEREKFNELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFL 205
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
S LK+ L D I+ D+ GSDH P L L
Sbjct: 206 CSNPLKTRLKDALIYKDILGSDHCPVGLEL 235
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 179 bits (453), Expect = 9e-42, Method: Composition-based stats.
Identities = 114/319 (35%), Positives = 150/319 (47%), Gaps = 58/319 (18%)
Query: 723 EHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI 782
+HK P KI SWNV+G+RAW + K G ++++ ++ C+QE
Sbjct: 50 DHKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQET 97
Query: 783 RCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTH 837
+C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 98 KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI----------- 146
Query: 838 GFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL 897
G EH + GRV+ E++ F LV Y P A L
Sbjct: 147 ----GDEEHDQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGL 179
Query: 898 SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 180 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
Query: 958 FSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLE 1014
F L + D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +
Sbjct: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
Query: 1015 IHGDVEGSDHAPQILYLNL 1033
I GSDH P LYL L
Sbjct: 300 IRSKALGSDHCPITLYLAL 318
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 179 bits (453), Expect = 9e-42, Method: Composition-based stats.
Identities = 114/319 (35%), Positives = 150/319 (47%), Gaps = 58/319 (18%)
Query: 723 EHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI 782
+HK P KI SWNV+G+RAW + K G ++++ ++ C+QE
Sbjct: 49 DHKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQET 96
Query: 783 RCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTH 837
+C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 97 KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI----------- 145
Query: 838 GFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL 897
G EH + GRV+ E++ F LV Y P A L
Sbjct: 146 ----GDEEHDQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGL 178
Query: 898 SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 179 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 238
Query: 958 FSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLE 1014
F L + D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +
Sbjct: 239 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 298
Query: 1015 IHGDVEGSDHAPQILYLNL 1033
I GSDH P LYL L
Sbjct: 299 IRSKALGSDHCPITLYLAL 317
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F D + FCIQE + +L G
Sbjct: 6 KFISWNVNGLRA--VVKKDFDKTF----------NDLDADFFCIQETKMQAGQLALTLPG 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K P+ V +G + + F+
Sbjct: 54 YHQYFNYAERKGYSGTAIFTKHAPLNVYYG--------IQSDEFDH-------------- 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR +T+EY FYLV Y P + L L ++ W+ + +L
Sbjct: 92 ----------------EGRAITLEYPTFYLVTSYVPNSGAKLKRLDFRMGWDVAFQQYLA 135
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN+ KPV+L GDLNVAH ID+ P TN +GFT +ERN FS+FLD GF+D RH YP
Sbjct: 136 NLNKEKPVILCGDLNVAHKTIDLKNPQTNHHNAGFTDEERNSFSHFLDQGFMDTFRHFYP 195
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + + GWR+DYF+ S +L H+SD +I DV GSDH P
Sbjct: 196 DMTDIYSWWSYRFHARDRNAGWRIDYFVASNRLADHISDSKILTDVFGSDHCP 248
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 179 bits (453), Expect = 9e-42, Method: Composition-based stats.
Identities = 102/294 (34%), Positives = 152/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF F ++ D ++FC+QE + ++ PE
Sbjct: 2 KLISWNVNGLRACV-------------KKGFEDFFKEADADIFCVQETKLQEGQIDFAPE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV +K P++V +G M+ EH +
Sbjct: 49 GYECYWNYAEKKGYSGTAVFTKKHPLKVWNGIGME---------------EHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E F+ V VY P ++ +L L ++ W R +L
Sbjct: 89 ------------------GRVITLEFEDFFFVTVYTPNSQSELKRLDYRMKWEDDFREYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L++ KPV++ GDLNVAH ID+ P TN +GFT +ERN F+ L GF+D R+L
Sbjct: 131 QELDKEKPVIMTGDLNVAHEEIDLKNPKTNKKNAGFTQEERNKFTELLGAGFVDSFRYLN 190
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P YT+W Y + K GWR+DYF++S++ K + D I+ V GSDH P
Sbjct: 191 PELAGAYTWWSYRFKAREKDAGWRIDYFVVSERWKEKIEDAIIYKTVMGSDHCP 244
>gi|333394549|ref|ZP_08476368.1| exodeoxyribonuclease III [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 257
Score = 179 bits (453), Expect = 1e-41, Method: Composition-based stats.
Identities = 99/296 (33%), Positives = 147/296 (49%), Gaps = 51/296 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + +K+ F Q D + FCIQE + ++
Sbjct: 4 LKFISWNVNGLRA------------VVKKNFMEFFEQQDADFFCIQETKLQAGQIELTLP 51
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K +P+ VT+G G EH
Sbjct: 52 GYYQYWNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVAEHDQ------ 90
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+EY+ FYL+ Y P ++ L L ++ W R ++
Sbjct: 91 -----------------EGRLITLEYKDFYLLTCYTPNSQTKLKRLDYRMSWEDAFRSYI 133
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+LN+ KPV+ GDLNVAH ID+ TN +GF+ +ER FS L GF D R+ Y
Sbjct: 134 STLNQKKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERAKFSQLLAAGFTDSFRYFY 193
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ Y++W Y ++ GWR+DYF+ + QL+ L+D I DV GSDH P +L
Sbjct: 194 PDQVTYSWWSYRFNARQNNAGWRIDYFVTADQLQPQLADAAILTDVLGSDHCPVML 249
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 27 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 74
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVAV +K KP+ VT+G G EH +
Sbjct: 75 YYDYWNYAQKKGYSGVAVFTKDKPLNVTYGI---------------GIEEHDN------- 112
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T EYE FYL+ Y P ++ L+ L ++ W ++
Sbjct: 113 ----------------EGRVITAEYEDFYLITCYTPNSQRGLTRLDYRMTWEDAFLSYIL 156
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER L GF D R LYP
Sbjct: 157 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDVILTSGFCDSFRVLYP 216
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y +K GWR+DYF++S +LK + + +IH D+ GSDH P
Sbjct: 217 DKTDAYSWWSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSDILGSDHCP 269
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 179 bits (453), Expect = 1e-41, Method: Composition-based stats.
Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K F +D F+ + + + FC+QE + +L +G
Sbjct: 2 KLISWNVNGLRAC--CDKGF-------RDAFTRL---NADFFCLQETKMQAGQLDLAFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ +P+ V++G G +EH +
Sbjct: 50 YTSYWNYAEKKGYSGTAIFTRHQPLNVSYGM---------------GIDEHDRE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E FYLV VY P +++ L L ++ W R +L
Sbjct: 89 -----------------GRVITLEMENFYLVTVYTPNSQDGLKRLDYRMTWEDAFRRYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P TN +GFT QER F LD GF+D R+ YP
Sbjct: 132 ELDAKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQTLLDAGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y R K GWR+DYFL S +L L IH ++ GSDH P
Sbjct: 192 EQEGIYSWWSYRFRAREKNAGWRIDYFLASARLAGKLESAAIHTEIFGSDHCP 244
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + +++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------NELDADIFCLQETKLQPDQISLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAVFTRIKPLSVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVCCYTPNSQRELARLDYRMNWEDAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P TN +GF+ +ER + L GF D RHLY
Sbjct: 131 LELDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L ++
Sbjct: 191 PDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFGSDHCPVELVID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA K F ++ D ++FCIQE + +L G
Sbjct: 4 KMVSWNVNGIRA------------CMTKGFMDFFQEIDADIFCIQETKMQPGQLDIATPG 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V +K KP+ VT ++ G +EH +
Sbjct: 52 YYQYINSADKKGYSGTMVFTKEKPIAVT---------------YDLGIDEHDHE------ 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EYE FYLV VY P +K+ L L ++ W R +L
Sbjct: 91 -----------------GRVITCEYENFYLVCVYTPNSKDGLLRLDYRMQWEDDFRAYLN 133
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L E K V++ GDLNVAH ID+ P TN +GFT +ER + GF+D R+LYP
Sbjct: 134 ALKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAKMTTLQQSGFIDSFRYLYP 193
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + K GWR+DYFL+S+ K + + IH DV GSDH P
Sbjct: 194 EQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKDKIQEASIHTDVFGSDHCP 246
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 178 bits (452), Expect = 1e-41, Method: Composition-based stats.
Identities = 99/293 (33%), Positives = 154/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA ++K F F D ++FCIQE + ++ G
Sbjct: 2 KLISWNVNGLRAC--LSKGFED----------FFNTADADIFCIQETKMHPDQAEIGLIG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV ++ P+ VT+G +++ EH +
Sbjct: 50 YEKYWNSAVKKGYSGTAVFTRIAPLSVTYGLNIE---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+E+E F+LVNVY P +K +L L ++ W R +L
Sbjct: 89 -----------------GRIITLEFEDFFLVNVYTPNSKRELLRLDYRMRWEDEFRTYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPV++ GD+NVAH ID+ P TN +GFT +ER+ + L+ GF D RH+YP
Sbjct: 132 ALDQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTALLEAGFTDTFRHIYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + ++ GWR+DYFL+S L+ + + I+ DV GSDH P
Sbjct: 192 DKIDAYTWWSYMMNARARNIGWRIDYFLVSNALREAIKEATIYPDVMGSDHCP 244
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 151/319 (47%), Gaps = 58/319 (18%)
Query: 723 EHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI 782
+HK P KI SWNV+G+RAW + K G ++++ ++ C+QE
Sbjct: 8 DHKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQET 55
Query: 783 RCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTH 837
+C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 56 KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI----------- 104
Query: 838 GFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL 897
G EH D E GRV+ E++ F LV Y P A L
Sbjct: 105 ----GDEEH--DQE---------------------GRVIVAEFDSFVLVTAYVPNAGRGL 137
Query: 898 SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 138 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 197
Query: 958 FSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLE 1014
F L + D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +
Sbjct: 198 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 257
Query: 1015 IHGDVEGSDHAPQILYLNL 1033
I GSDH P LYL L
Sbjct: 258 IRSKALGSDHCPITLYLAL 276
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 149/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D + FCIQE + +L G
Sbjct: 2 KLISWNVNGLRA--CVGKDFEQQF----------KDLDADFFCIQETKMQDGQLDISFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V++G ++ H H
Sbjct: 50 YESYWNYAEKKGYSGTAIFTKHKPLSVSYGIDIEE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E + F+LV VY P +++ L L ++ W + +L
Sbjct: 88 ----------------EGRVITLEMDDFFLVTVYTPNSQDGLRRLEYRMKWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ER + L+ GF+D R LYP
Sbjct: 132 KLDAKKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQLLNNGFIDTFRSLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R + GWR+DYFLIS +LK L D +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISDRLKDRLVDAKIHTEIMGSDHCP 243
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM 16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA T FL F + D ++FC+QE + ++ G
Sbjct: 2 KFISWNVNGIRA------CVTKGFL------DFFNEVDADIFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G ++ EH +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKQEPISVNYGIQIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ FY V VY P ++ +L L ++ W R +L
Sbjct: 89 -----------------GRVITLEFDNFYFVTVYTPNSQSELKRLDYRMKWEDDFRKYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN K V++ GDLNVAH ID+ P TN +GFT QER F+ L+ GF+D +RH P
Sbjct: 132 KLNSKKGVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKFTELLESGFIDTYRHFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF SK L+++L +IH + GSDH P
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDYFCASKDLENNLVSADIHTQILGSDHCP 244
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 148/307 (48%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPTELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 110 DLPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ E+++F LV Y P A L L + W+
Sbjct: 153 QE---------------------GRVIVAEFDKFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLTSQKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + +K GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARAKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F ++ D +VFCIQE + ++ G
Sbjct: 3 KFISWNVNGLRA--CVGKGF----------LDFFKEIDADVFCIQESKLQEGQIDLDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ ++ +P+ V++G M+ EH ++
Sbjct: 51 YHQYWNYALKKGYSGTAMFTREEPLSVSYGIGME---------------EHDTE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E+ +Y+V Y P +++ L+ L ++ W +LK
Sbjct: 90 -----------------GRVITAEFPDYYVVTCYTPNSQDGLARLDYRMKWEDDFLAYLK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPVV GDLNVAH ID+ P TN +GFT +ER F++ L GF+D R+ YP
Sbjct: 133 GLEKKKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLSAGFIDTFRYFYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + +K GWR+DYF +S+ LK L IH +V GSDH P
Sbjct: 193 DAEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVMGSDHCP 245
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 151/319 (47%), Gaps = 58/319 (18%)
Query: 723 EHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI 782
+HK P KI SWNV+G+RAW + K G ++++ ++ C+QE
Sbjct: 11 DHKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQET 58
Query: 783 RCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTH 837
+C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 59 KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI----------- 107
Query: 838 GFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL 897
G EH D E GRV+ E++ F LV Y P A L
Sbjct: 108 ----GDEEH--DQE---------------------GRVIVAEFDSFVLVTAYVPNAGRGL 140
Query: 898 SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 141 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 200
Query: 958 FSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLE 1014
F L + D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +
Sbjct: 201 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 260
Query: 1015 IHGDVEGSDHAPQILYLNL 1033
I GSDH P LYL L
Sbjct: 261 IRSKALGSDHCPITLYLAL 279
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 150/301 (49%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNGIRA +K ++ ++ D + FCIQE +C ++
Sbjct: 1 MKFVSWNVNGIRA------------CLKKGWLTYFQEVDADFFCIQETKCQAGQVEIDLP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K P+ V +G
Sbjct: 49 GYEQYWNYALKKGYSGTAIFTKHTPLSVKYGV---------------------------- 80
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D D+GR++T+EYE FY+V VY P +K DL+ L +L+W LR +L
Sbjct: 81 ----------GDHETEDEGRIITLEYENFYVVTVYTPNSKRDLARLEERLVWEDDLRVYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV+ GDLNVAH ID+ +N+G SGFT ER+ + L+ GF D RH Y
Sbjct: 131 QQLDAQKPVIYCGDLNVAHEEIDLKNAKSNVGNSGFTDGERSKMTLLLNSGFTDSFRHKY 190
Query: 975 PNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P +T+W Y ++ + GWR+DYF++S +L + EIH GSDH P L L+
Sbjct: 191 PTESNRFTWWSYMNKVRERNIGWRIDYFIVSDRLVPQIETAEIHDQQLGSDHCPIALTLH 250
Query: 1033 L 1033
+
Sbjct: 251 V 251
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 38 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 85
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 86 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRHCPLKVSYGI---------------GEEEH 130
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E++ F LV Y P A L L + W
Sbjct: 131 --DQE---------------------GRVIVAEFDSFVLVTTYVPNAGRGLVRLEYRQRW 167
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 168 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 227
Query: 966 FLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 228 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 287
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 288 HCPITLYLAL 297
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA QK F + D + FC+QE + ++ G
Sbjct: 6 KFISWNVNGLRA------------CMQKGFLDFFNEVDADFFCVQETKLQEGQIALDLPG 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW ++GY+G A+ +K +P+ V++G +G H H
Sbjct: 54 YHQFWNYAEKKGYSGTAIFTKHEPLSVSYG----IGIPEHDH------------------ 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY+ FYLV Y P ++ +L+ L ++ W LK
Sbjct: 92 ----------------EGRVITLEYDAFYLVTCYTPNSQNELARLPYRMQWEEDFLAFLK 135
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E+KPV++ GDLNVAH ID+ P TN +GF+ +ER + L+ GF D R+ YP
Sbjct: 136 RLDEVKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTTLLNSGFTDTFRYFYP 195
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYF+ S+ L L IH +V GSDH P
Sbjct: 196 DKEGIYSWWSYRFKAREKNAGWRIDYFITSRCLDEKLQSAGIHTEVYGSDHCP 248
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 152/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F R D + FC+QE + +L EG
Sbjct: 2 KFVSWNVNGLRA--CVGKSFEESF----------RMLDADFFCLQETKMQEGQLNLQFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y A+W ++GY+G A+ ++ +P V++G +G H H
Sbjct: 50 YEAYWNYAEKKGYSGTAIYTRHQPQSVSYG----MGVEAHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E FYLV VY P +++ L L+ ++ W ++K
Sbjct: 88 ----------------EGRIITLEMPGFYLVTVYTPNSQDGLKRLAYRMQWEEDFLQYIK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ERN F+ L GF D R+ YP
Sbjct: 132 KLDAKKPVIICGDMNVAHEEIDIKNPKTNRHNAGFTDEERNKFTTLLSEGFTDTFRYKYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + +K GWR+DYF++S +LK + D +IH + GSDH P + LNL
Sbjct: 192 EQVRYSWWSYRFQARAKNAGWRIDYFVVSNRLKPQIIDAKIHTAILGSDHCPVEVELNL 250
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 153/297 (51%), Gaps = 51/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F + F + D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--VVGKDFENTF----------KALDADFFCLQETKMQAGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G A+ ++ KP+ V++G +G H H
Sbjct: 50 YDSFWNYADKKGYSGTAIYTRHKPLNVSYG----IGIDQHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E F+LV VY P ++E+L L ++ W + +L
Sbjct: 88 ----------------EGRVITLEMPTFFLVTVYTPNSQEELRRLDYRMQWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPV++ GD+NVAH ID+ P TN +GFT +ER + LD GF D R YP
Sbjct: 132 NLDKCKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLDAGFTDTFRWKYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y + + GWR+DYFL+S +L++ + D +IH D+ GSDH P L L
Sbjct: 192 EEVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIHTDILGSDHCPVELLL 248
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPVELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 110 ELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ EY+ F LV Y P A L L + W+
Sbjct: 153 QE---------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 260
Score = 178 bits (451), Expect = 2e-41, Method: Composition-based stats.
Identities = 110/303 (36%), Positives = 153/303 (50%), Gaps = 57/303 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
K SWNVNG+RA VNK FL + D +VFC+QE + ++ + P
Sbjct: 2 KFVSWNVNGLRAC--VNK---GAFL------PYFESVDADVFCVQETKLQAGQI-QLPIG 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E Y FW R+GY+G AV ++ P+ V +GF
Sbjct: 50 EAYQQFWNYAERKGYSGTAVFTRMPPLDVRYGF--------------------------- 82
Query: 854 PSHPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+G+D +GR++T+E+ FY+V VY P AK DLS L +L W R
Sbjct: 83 -------------GNGVDPEGRIITLEFPSFYVVTVYTPNAKRDLSRLPYRLEWEDAFRA 129
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+L +L+ KPV+ GDLNVAH ID+ +N G SGFT +ER + LD GF+D R
Sbjct: 130 YLCALDREKPVIACGDLNVAHQEIDIKNAKSNRGNSGFTDEERAKMTELLDAGFVDTFRA 189
Query: 973 LYPN-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
LYP+ YT+W R + GWR+DYFL+S++L+ + D I V GSDH P +L
Sbjct: 190 LYPDVTDKYTWWSNMPRVRERNIGWRIDYFLVSERLRDCILDARIDDHVLGSDHCPVVLE 249
Query: 1031 LNL 1033
+ L
Sbjct: 250 MAL 252
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA +K + + + + FC+QEI+ +L EGY
Sbjct: 5 SWNVNGLRA------------CIKKGFLDYFNEINADFFCLQEIKMSEGQLDLELEGYET 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
F+ R+GY+G A+ +K KP+ V +G M+ EH
Sbjct: 53 FYNYAQRKGYSGTAIFTKFKPLSVKYGMGME---------------EHD----------- 86
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
++GR++T+EY+ F+LV Y P +K++L L +++W R +L LN
Sbjct: 87 ------------NEGRLITLEYDDFFLVTCYTPNSKQELLRLDYRMVWEDAFRNYLLDLN 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-H 977
+ K V++ GDLNVAH ID+ P TN +GFT +ER S LD GF D R+ YP+
Sbjct: 135 KTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMSILLDSGFTDTFRYFYPDKE 194
Query: 978 RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
Y++W Y+ + + GWR+DYFL SK + L D +IH + GSDH P L
Sbjct: 195 NEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQSILGSDHCPVYL 247
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 151/301 (50%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + +++
Sbjct: 1 MKLISWNVNGLRA--AVTKGFMESF----------NELDADIFCLQETKLQPDQISLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQYWNSAVKKGYSGTAVFTRIKPLSVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY+ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ +ER + L GF D RHLY
Sbjct: 131 LELDKKKPVILCGDLNVAHQEIDLKNPKMNRKNAGFSDEERAKMTELLGAGFTDTFRHLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L + + +IH + GSDH P L ++
Sbjct: 191 PDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFGSDHCPVELVID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPVELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 109 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 151
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ E++ F LV Y P A L L + W+
Sbjct: 152 QE---------------------GRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 250
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 251 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 26 PATLKIASWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 73
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 74 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 118
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E++ F LV Y P A L L + W
Sbjct: 119 --DQE---------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 155
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 156 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 215
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 216 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 275
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 276 HCPITLYLAL 285
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/301 (34%), Positives = 155/301 (51%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K+ SWNVNG+RA V K F F + D ++FC+QE + P + E P
Sbjct: 2 KLISWNVNGLRA--AVTKGFIDSF----------NELDADIFCLQETKLQPHQIELELP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY FW ++GY+G AV ++ KP+ VT+G G EH +
Sbjct: 49 GYEQFWNSAVKKGYSGTAVFTRIKPIAVTNGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T E++ FYLV Y P ++ +L+ L ++ W R +L
Sbjct: 89 ------------------GRVITAEFDNFYLVCCYTPNSQRELARLDYRMAWEDAFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAHN ID+ P TN +GF+ +ER + L+ GF D R+LY
Sbjct: 131 LELDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTTLLESGFTDTFRYLY 190
Query: 975 PNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + + GWR+DYF+ SK+L +++ +IH + GSDH P L +
Sbjct: 191 PDAVDEYSWWSYMGKARDRNVGWRIDYFITSKRLDDKINEAKIHQQIFGSDHCPVELDIE 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 147/292 (50%), Gaps = 55/292 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLP-ECPEGY 796
SWNVNG+RA K GFS + ++ D ++FC+QE + ++ E EGY
Sbjct: 5 SWNVNGLRA-------------AVKKGFSDYFKEADADIFCVQETKLQAGQIELEGLEGY 51
Query: 797 HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSH 856
H +W ++GY+G AV +K +P+ V +G
Sbjct: 52 HDYWNYAVKKGYSGTAVFTKEEPLSVQYGL------------------------------ 81
Query: 857 PELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS 916
PE Q +GRV+T+E+ FY V VY P ++ +L L + W H+ +
Sbjct: 82 PEDVHNQ--------EGRVITLEFPAFYFVTVYTPNSQAELKRLDYRTEWEQAFADHIIA 133
Query: 917 LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN 976
L++ KPVV GDLNVAH ID+ P TN GF+ QER F LD GF+D R+LYP
Sbjct: 134 LDKQKPVVFCGDLNVAHQEIDLKNPKTNRKNPGFSDQERAMFGQLLDNGFVDTFRYLYPE 193
Query: 977 HR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + S+ GWR+DYF++S +L + + IH +V GSDH P
Sbjct: 194 QEDAYSWWSYRMNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVLGSDHCP 245
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp. GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp. GTL1]
Length = 266
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 154/295 (52%), Gaps = 41/295 (13%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNVNGIRA + K F F+++HD ++ C+QE + +
Sbjct: 2 KIYSWNVNGIRA------------VVNKGAFQKFVKEHDPDILCLQETKAERGQAEIDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y W ++GY+G A+ SKT+P+ + +GF + G D+ P
Sbjct: 50 HYIENWNSAVKKGYSGTAIFSKTQPLSIINGFPEDIIKKYKVEG----------DVYGDP 99
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK-LLWNSFLRGH 913
+ +GRVM E+E FY+V VY P +K +L+ L+++ W+ +
Sbjct: 100 N---------------KEGRVMAAEFEDFYIVTVYTPNSKRELTRLTLREKHWDPAFLAY 144
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+K L + KPV+ GDLNVAH D+A P TN G+ GFT +ER F FLD GF+D R
Sbjct: 145 VKQLEKTKPVIFCGDLNVAHTEDDLARPDTNHGEHGFTDEEREGFQKFLDAGFVDTFRMF 204
Query: 974 YP-NHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P + YT+W ++ + ++ GWR+DYFL+S LKS + +IH DV GSDH P
Sbjct: 205 TPKGNGHYTWWTHWANARARNVGWRIDYFLVSHALKSKVKSAKIHADVMGSDHCP 259
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 148/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ F + + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKDFSQSF----------ETLNADFFCLQETKMQAGQLDLQFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ +P+ VT+G G +EH +
Sbjct: 50 YTSYWNYADKKGYSGTAIYARKEPIAVTYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ F+LV VY P A++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDNFFLVTVYTPNAQDGLRRLDYRMTWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P +N +GFT +ER+ + L GF D R LYP
Sbjct: 132 RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERDKMTQLLSHGFTDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS +L+ L D IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNAGWRIDYFLISDRLRPQLKDASIHTEIFGSDHCP 243
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA V F +F ++ D ++FCIQE + ++ E P
Sbjct: 2 KLISWNVNGLRA--AVKHGFLDVF----------KELDADIFCIQETKLQEGQIELELPH 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ +K KP+ V +G G EH +
Sbjct: 50 -YYQYWNYAEKKGYSGTAIFTKKKPLAVRYGL---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++T+E+E+FY++ Y P ++ L L ++ W+ R ++
Sbjct: 89 ------------------GRIITLEFEKFYVITCYTPNSQPKLKRLEYRMAWDDAFRAYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
LN+ KPV+ GDLNVAH ID+ TN +GFT +ERN F+ L+ GF D +R+ Y
Sbjct: 131 DQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNKFTQLLNSGFTDTYRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ + GWR+DYF+ SK L L+D +IH ++ GSDH P L L+
Sbjct: 191 PSKEGVYSWWSYRFNARANNAGWRIDYFVSSKALDQKLTDAQIHTEIFGSDHCPVELDLD 250
Query: 1033 L 1033
+
Sbjct: 251 I 251
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 148/292 (50%), Gaps = 52/292 (17%)
Query: 742 VNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWF 801
+NG+RA K F D +VFCIQE + E+ +GY FW
Sbjct: 1 MNGLRA------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWN 48
Query: 802 PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTT 861
++GY+GV +K +P+ V++G +++ EH +
Sbjct: 49 CAIKKGYSGVVTFTKKEPLSVSYGINIE---------------EHDKE------------ 81
Query: 862 IQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIK 921
GRV+T E+E FYLVNVY P +++ L LS ++ W + LK+L K
Sbjct: 82 -----------GRVITCEFESFYLVNVYTPNSQQALFRLSYRMSWEVEFKKFLKALELKK 130
Query: 922 PVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIY 980
PV++ GDLNVAHN ID+ P TN +GF+ +ER FS L+ GF+D R+ YPN + Y
Sbjct: 131 PVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAY 190
Query: 981 TYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
T+W Y + K GWR+DYFL S LK+ L D I+ D+ GSDH P L L
Sbjct: 191 TWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 242
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 143/272 (52%), Gaps = 41/272 (15%)
Query: 765 GF-SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF F D ++FC+QEI+ ++ E Y+++W ++GY+G AV SK KP+ V
Sbjct: 4 GFMDFFDSVDADIFCLQEIKLSEGQIEWNKENYYSYWNYAEKKGYSGTAVFSKEKPLSVK 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G +EH + GRV+T+E+E F
Sbjct: 64 YGI---------------GIDEHDHE-----------------------GRVITLEFENF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
Y+V VY P ++ +L+ L ++ W R L L + KPVV+ GD+NVAH ID+ P T
Sbjct: 86 YMVTVYTPNSQRELTRLEYRMKWEDDFRNFLNDLRKTKPVVVTGDMNVAHKEIDLKNPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFL 1001
N +GFT +ER + LD GF+D R+ YP+ + Y++W Y + K GWR+DYFL
Sbjct: 146 NRKNAGFTDEERQKMTELLDSGFIDTFRYFYPDVEQKYSWWSYMFKSREKNAGWRIDYFL 205
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK+L+ L EIH V GSDH P L ++L
Sbjct: 206 ASKELEDRLISAEIHDKVLGSDHCPIELVIDL 237
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++VT+G G EH D
Sbjct: 110 ELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVTYGI---------------GEEEH--D 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ E++ F LV Y P A L L + W+
Sbjct: 153 QE---------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNAAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 154/299 (51%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVTKGFMDYF----------NESDADIFCLQETKLQAGQIELPLEG 49
Query: 796 -YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G AV +K +P+ V +G D E
Sbjct: 50 RYSQYWNYAVKKGYSGTAVFTKVEPLTVRYGIE--------------------EDSE--- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D+GR++T+E+++FYLVNVY P AK DLS L +L W R +L
Sbjct: 87 ----------------DEGRILTLEFDRFYLVNVYTPNAKRDLSRLGYRLEWEDRFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPV++ GDLNVAH ID+ +N G SGFT +ER ++ L+ GF+D RHL+
Sbjct: 131 LELDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESGFIDTFRHLH 190
Query: 975 PNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P +++W + + + GWR+DYFL S +L H++D I + GSDH P ++ L
Sbjct: 191 PERDDAFSWWSFMPKVRERNIGWRIDYFLASARLAPHVTDAGIDSAILGSDHCPVMVQL 249
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA +NK F F + +VFCIQE + E+
Sbjct: 2 RLISWNVNGLRA--CMNKGFMEFF----------NSVNADVFCIQESKMQREQAEFDFPN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GVA+ SK KP+ V + DM G +
Sbjct: 50 YEEYWNSAEKKGYSGVAIFSKIKPLSVEY------------------------DM--GIA 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T E+ FYLVNVY P +K +L L ++ W R LK
Sbjct: 84 HHD------------KEGRIITAEFSDFYLVNVYTPNSKRELERLEYRMEWEDDFRTFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAH ID+ P TN +GFT +ER S LD GF D +RH YP
Sbjct: 132 NLESKKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSALLDSGFTDTYRHFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + + GWR+DYFL SK L S L I+ ++ GSDH P
Sbjct: 192 EKQGAYTWWSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEILGSDHCP 244
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 52/295 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N K SWNVNG+RA + K F F + + + FC+QE + ++
Sbjct: 3 NLKYISWNVNGLRA--CIKKGFLDSF----------KNLNADCFCLQETKLQPHQIELNI 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY+ +W ++GY+G A+ +K KP+ V++G +++ EH +
Sbjct: 51 PGYYQYWNSAIKKGYSGTALFTKIKPISVSYGMNIE---------------EHDQE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++T E+E +LV Y P ++ L+ L ++ W + + +
Sbjct: 92 -------------------GRLITAEFENHFLVVCYTPNSQRQLARLEYRMKWENDFKNY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L E KPV+L GDLNVAH ID+A P +N +GFT ER FS L+ GF D R+L
Sbjct: 133 LLKLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFSTLLENGFTDTFRYL 192
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP+ + Y++W Y+ + + GWR+DYFL+S +LK+ + D +IH +++GSDH P
Sbjct: 193 YPDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQGSDHCP 247
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 177 bits (449), Expect = 3e-41, Method: Composition-based stats.
Identities = 103/296 (34%), Positives = 148/296 (50%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F R+ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------RELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V +G G + NE
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVAYGI-----------GISAHDNE------------ 88
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
GRV+T+E++ YLV VY P AK L L +++W R L L
Sbjct: 89 ---------------GRVITMEFDDVYLVTVYTPNAKRALERLDYRMMWEDAFRAFLLGL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F+ L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLQAGFIDTFRALYPDR 193
Query: 978 R-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S +L+ ++ EIH D+ GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHADIFGSDHCPVSLTL 249
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
M27]
Length = 252
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 155/305 (50%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ ++ C+QE + ++ E
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETKADILCLQETKVQDGQVSLQLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHDYWNYAVKKGYSGTAVFSKEKPLHVFYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KEYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFSALLNTGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S+ I D+ GSDH P
Sbjct: 188 RYLYPDREGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF + D + FC+QEI+ ++ +G
Sbjct: 2 KFVSWNVNGLRAVRE--KGFEDIF----------KNFDADAFCLQEIKLQENQIELHFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP+ V +G G EH DME
Sbjct: 50 YYEYWNYANKKGYSGTAIYTKHKPIDVHYGL---------------GIEEH--DME---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EYE +Y+ VY P A+ +L+ L+ + W R + K
Sbjct: 89 -----------------GRLITLEYENYYIATVYTPNAQPELARLAYRQKWEEDFREYFK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GD+NVAH ID+ P N GF+ +ER F+ L+ GF+D R+ YP
Sbjct: 132 KLDEKKPVIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKFTLLLNAGFIDTFRYFYP 191
Query: 976 NHRI-YTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ GWR+DYF +S +LK L IH DV GSDH P
Sbjct: 192 DKTDEYSWWSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIHQDVMGSDHCP 244
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA +K F + D ++FCIQE + +L G
Sbjct: 2 KFISWNVNGIRA------------CVKKGFLDFFNETDADIFCIQESKMQEGQLDLNLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G + +K +P+ V +G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTGIFTKEEPISVFYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ +Y + VY P ++ +L+ LS ++ W +LK
Sbjct: 89 -----------------GRVITLEFKDYYFITVYTPNSQSELARLSYRMKWEEDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVA ID+ P TN +GFT +ER L GF+D R+LYP
Sbjct: 132 KLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTILSNGFIDTFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y ++ GWR+DYF++S+ LK +SD +I DV GSDH P
Sbjct: 192 DQTGIYSWWSYRFNARKNNAGWRIDYFIVSECLKDRISDAKILTDVMGSDHCP 244
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 177 bits (449), Expect = 3e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 28 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 75
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 76 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 120
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 121 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 157
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 158 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 217
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 218 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 277
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 278 HCPITLYLAL 287
>gi|167756678|ref|ZP_02428805.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
gi|167702853|gb|EDS17432.1| exodeoxyribonuclease III [Clostridium ramosum DSM 1402]
Length = 251
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA + K F + +++ ++FC+QE + ++
Sbjct: 1 MKLVSWNVNGIRA--CITKGF----------YDVLKESKADIFCVQETKMQEGQIELEKH 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ + ++GY+G V SK KP+ ++G +G H H
Sbjct: 49 GYYTYMNSAEKKGYSGTLVFSKEKPLNYSYG----IGIEEHDH----------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+EYE+FYLVN Y P ++ +L L ++ W +L
Sbjct: 88 -----------------EGRVVTLEYEKFYLVNCYTPNSQNELKRLDYRMHWEDDFLAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
KSL + KPV+L GDLNVAH ID+ P TN +GF+ +ER +N L+ GF+D +R+LY
Sbjct: 131 KSLEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTNLLENGFIDTYRYLY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ GWR+DYF++S LK + + I D+ GSDH P L ++
Sbjct: 191 PDQEGVYSWWSYRFNARKNNAGWRIDYFIVSDCLKEGIKEAFICTDILGSDHCPVGLEID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|326523229|dbj|BAJ88655.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 190/398 (47%), Gaps = 79/398 (19%)
Query: 664 PPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILE 723
P KR + +K+V E V T KI N+ VE+ + D +P+ +L
Sbjct: 185 PNKRSRTKQKSVKGSTPKENAVTTVKI-NKTSHQKETIVVNGAVEKAGLGDGAEPWTVLV 243
Query: 724 HKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS 767
HK+ Q ++ P+N KI SWNVNG+RA L + GFS
Sbjct: 244 HKKPQPEWIPYNPKVMRPAPLSKDTRALKILSWNVNGLRA------------LVKSRGFS 291
Query: 768 ---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQGYAGVAVLSKTK 818
++ D +V C+QE + +E + E EGY ++FW ++ GY+G A++S+ K
Sbjct: 292 IHELAQREDFDVLCLQETKMQEKDVEVIKESLLEGYTNSFWTCSVSKLGYSGTAIISRVK 351
Query: 819 PVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTV 878
P+ + +G + P H +GR++TV
Sbjct: 352 PLSIKYGLGV-------------------------PDHD-------------TEGRIVTV 373
Query: 879 EYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHID 937
E++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L GDLN AH ID
Sbjct: 374 EFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQEID 433
Query: 938 VALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGW 995
+ P N +GFT +ER F +NFL GF+D R +P+ Y+YW Y K +GW
Sbjct: 434 IHDPAGNSRSAGFTKEERKSFETNFLSKGFVDTFRKQHPDVVGYSYWGYRHNCRKTNRGW 493
Query: 996 RLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
RLDYFL+S+ + + D I DV SDH+P L L L
Sbjct: 494 RLDYFLVSESIAERIHDSYILPDVSASDHSPLGLILKL 531
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 156/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +NK F F + D ++FC+QE + +L
Sbjct: 2 KFVSWNVNGLRA--CMNKGFMETF----------QTLDADIFCLQETKMQPHQLELDLPR 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YKQYWNSAEKKGYSGTAIFTKVEPLNVSYGL---------------GIEEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+++F++V VY P +K +L L ++ W R +L
Sbjct: 89 -----------------GRVITLEFDKFFMVCVYTPNSKRELERLDYRMQWEDAFRNYLV 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPVV+ GDLNVAH ID+ P TN +GFT +ER+ + L GF+D R+LYP
Sbjct: 132 ELNKQKPVVMCGDLNVAHKEIDLKNPKTNRRSAGFTDEERSKMTELLQAGFVDTFRYLYP 191
Query: 976 NH-RIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y + + GWR+DYF++SK ++ ++ + IH + GSDH P L L++
Sbjct: 192 DKTSIYSWWSYMRKARENNAGWRIDYFIVSKDIEENIKEAGIHNEFFGSDHCPVSLELDI 251
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 147/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ F + + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKDFSQSF----------ETLNADFFCLQETKMQAGQLDLQFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ +P+ VT+G G +EH +
Sbjct: 50 YTSYWNYADKKGYSGTAIYARKEPIAVTYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ F+LV VY P A++ L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDNFFLVTVYTPNAQDGLRRLDYRMTWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH ID+ P +N +GFT +ER + L GF D R LYP
Sbjct: 132 RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEEREKMTQLLSHGFTDTFRTLYP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y R K GWR+DYFLIS +L+ L D IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFRAREKNAGWRIDYFLISDRLRPQLKDASIHTEIFGSDHCP 243
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str. D14]
Length = 251
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 150/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA V K F F ++ D ++FC+QE + ++ +
Sbjct: 2 KLVSWNVNGLRA--CVGKGFLDYF----------KEADADIFCLQETKLQEGQIELDLGS 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G AV ++ KP+ V +G D E
Sbjct: 50 EYEQYWNYAEKKGYSGTAVFTRIKPLSVRYGME--------------------EDYE--- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GR++T+E+EQFYLV VY P AK DLS L ++ W R +L
Sbjct: 87 --PE--------------GRIITLEFEQFYLVTVYTPNAKRDLSRLDYRMEWEDRFRTYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ +KPV++ GDLNVAHN ID+ +N G SG+T++ER + L GF+D RH Y
Sbjct: 131 TGLDAVKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTELLASGFIDTFRHFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ +Y++W Y + + GWR+DYFL S +L L D I + GSDH P
Sbjct: 191 PDREGVYSWWSYMPKIRERNIGWRIDYFLASSRLAPKLQDAGIDCHILGSDHCP 244
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +IF + D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--VVGKDFENIF----------KSLDADFFCLQETKMQAGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G A+ ++ KP+ VT+G +G H H
Sbjct: 50 YESFWNYADKKGYSGTAIYTRHKPLNVTYG----IGIDQHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E F+LV VY P ++++L L ++ W + +L
Sbjct: 88 ----------------EGRVITLEMPTFFLVTVYTPNSQDELRRLDYRMQWEDDFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF D R YP
Sbjct: 132 DLDKRKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLGAGFTDTFRWKYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + + GWR+DYFL+S +L+S + D +IH D+ GSDH P
Sbjct: 192 EEITYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIHTDILGSDHCP 243
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 177 bits (448), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA + K F + +++ ++FC+QE + ++
Sbjct: 1 MKLVSWNVNGIRA--CITKGF----------YDVLKESKADIFCVQETKMQEGQIELEKH 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ + ++GY+G V SK KP+ ++G +G H H
Sbjct: 49 GYYTYMNSAEKKGYSGTLVFSKEKPLNYSYG----IGIEEHDH----------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+EYE+FYLVN Y P ++ +L L ++ W +L
Sbjct: 88 -----------------EGRVVTLEYEKFYLVNCYTPNSQNELKRLDYRMHWEEDFLAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
KSL + KPV+L GDLNVAH ID+ P TN +GF+ +ER +N L+ GF+D +R+LY
Sbjct: 131 KSLEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTNLLENGFIDTYRYLY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ GWR+DYF++S LK + + I D+ GSDH P L ++
Sbjct: 191 PDQEGVYSWWSYRFNARKNNAGWRIDYFIVSDCLKEGIKEAFICTDILGSDHCPVGLEID 250
Query: 1033 L 1033
L
Sbjct: 251 L 251
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 151/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA GF F D ++FCIQE + ++
Sbjct: 2 KLISWNVNGLRA-------------CLSKGFEGFFNTADADIFCIQETKMHPDQAEIGLI 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ P+ V +G +++ EH +
Sbjct: 49 GYEKYWNSAVKKGYSGTAVFTRITPLSVIYGLNIE---------------EHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++T+E+E F+LVNVY P +K +L L ++ W R +L
Sbjct: 89 ------------------GRLITLEFENFFLVNVYTPNSKRELLRLDYRMRWEDEFRTYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+LN+ KPV++ GD+NVAH ID+ P TN +GFT +ER+ + L+ GF D RH+Y
Sbjct: 131 ITLNQSKPVIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKMTALLEAGFTDTFRHIY 190
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YT+W Y + ++ GWR+DYFL+S L+ + + I+ DV GSDH P
Sbjct: 191 PDKIDAYTWWSYMMNARARNIGWRIDYFLVSNTLREAIKEATIYPDVMGSDHCP 244
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1 [Pongo
abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 177 bits (448), Expect = 4e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L + L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------DSVDADIFCLQETKLQAGQIDLDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTXXFTKKEPLSVQYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEKFFMVTVYTPNSQAELKRLDYRMTFEDAILAYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPVVL GDLNVAH ID+ P TN +GF+ +ER F+ FL+ GF+D R+ YP
Sbjct: 132 KLDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGFVDSFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + ++ GWR+DYF++S++LK +L D +IH DV GSDH P L LN+
Sbjct: 192 DLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVLGSDHCPVELELNI 251
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 154/300 (51%), Gaps = 54/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA VNK F + + ++ + ++FC+QE + ++ E E
Sbjct: 2 KLISWNVNGLRA--CVNKGF----------YEYFKEANADIFCLQETKLQEGQIEMEIGE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G AV +K +P+ V +G +H
Sbjct: 50 AYHQYWNYAEKKGYSGTAVFTKMEPLSVRYGLE----------------EDH-------- 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GRV+T+E++ FYLV VY P AK DLS L +L W R +L
Sbjct: 86 -EPE--------------GRVITLEFQDFYLVTVYTPNAKRDLSRLDYRLEWEDRFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPVV+ GDLNVAH ID+ +N G SGFT +ER ++ L GF+D +R+ Y
Sbjct: 131 LQLDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAGFVDTYRYFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ YT+W + + + GWR+DYFL S++L L I V GSDH P +L L
Sbjct: 191 PDQTDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVMGSDHCPVVLELG 250
>gi|115440515|ref|NP_001044537.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|55296319|dbj|BAD68137.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297696|dbj|BAD68286.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|113534068|dbj|BAF06451.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|215715310|dbj|BAG95061.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619408|gb|EEE55540.1| hypothetical protein OsJ_03774 [Oryza sativa Japonica Group]
Length = 499
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 171/349 (48%), Gaps = 78/349 (22%)
Query: 713 IDFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFT 756
+D +P+ +L HK+ Q + P+N KI SWNVNG++A
Sbjct: 201 VDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALKILSWNVNGLKA--------- 251
Query: 757 SIFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQG 807
L + GFS ++ D ++ C+QE + +E + E EGY H+FW ++ G
Sbjct: 252 ---LLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFWTCSVSKLG 308
Query: 808 YAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADA 867
Y+G A++S+ KP+ + +G + P H
Sbjct: 309 YSGTAIISRVKPLSIKYGLGV-------------------------PDHDT--------- 334
Query: 868 SGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLA 926
+GRV+TVE+ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L
Sbjct: 335 ----EGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEKSKPVILT 390
Query: 927 GDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPY 985
GDLN AH ID+ P N +GFTI+ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 391 GDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVVGYSYWGY 450
Query: 986 YDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 451 RHNARKTNKGWRLDYFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL 499
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG R+ T FL F + ++FCIQE + ++ EG
Sbjct: 2 KLISWNVNGFRS------CLTKGFL------DFFNTVEADIFCIQESKLSAGQIELSLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G AV +K +P+ + G + P
Sbjct: 50 YTQYFNYAERKGYSGTAVFTKKQPLTCSFGMGI-------------------------PL 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T+EY++FYL+N+YAP ++ +L+ L +L W R +++
Sbjct: 85 HDK-------------EGRMITLEYDEFYLINLYAPNSQAELARLEYRLTWEEDFRRYVQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN KPV+ GDLNVAH ID+ P N +GFT +ER FS L+ GF+D R+LYP
Sbjct: 132 TLNSHKPVIFCGDLNVAHQEIDLKNPQANRRNAGFTDEERLKFSELLESGFIDTFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ + GWR+DYF +S++LK L EI+ V GSDH P
Sbjct: 192 EQKDSYSWWSYRFNARVRNAGWRIDYFCMSERLKDSLQSAEIYTSVLGSDHCP 244
>gi|218189226|gb|EEC71653.1| hypothetical protein OsI_04096 [Oryza sativa Indica Group]
Length = 499
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 171/349 (48%), Gaps = 78/349 (22%)
Query: 713 IDFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFT 756
+D +P+ +L HK+ Q + P+N KI SWNVNG++A
Sbjct: 201 VDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALKILSWNVNGLKA--------- 251
Query: 757 SIFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQG 807
L + GFS ++ D ++ C+QE + +E + E EGY H+FW ++ G
Sbjct: 252 ---LLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFWTCSVSKLG 308
Query: 808 YAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADA 867
Y+G A++S+ KP+ + +G + P H
Sbjct: 309 YSGTAIISRVKPLSIKYGLGV-------------------------PDHDT--------- 334
Query: 868 SGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLA 926
+GRV+TVE+ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L
Sbjct: 335 ----EGRVVTVEFNDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKDLEKSKPVILT 390
Query: 927 GDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPY 985
GDLN AH ID+ P N +GFTI+ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 391 GDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFVDTFRKQHPNVVGYSYWGY 450
Query: 986 YDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 451 RHNARKTNKGWRLDYFLVSESIAERVHDSYIIPDISASDHSPLGLVLKL 499
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 152/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F+ + ++ CIQE + ++ +
Sbjct: 2 KMLSWNVNGIRA-------------CLKNGFMDFLERESPDIMCIQETKVQSGQVQLGLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W R+GY+G A+ +K KP V++G G+NEH +
Sbjct: 49 GYFQYWNYAERKGYSGTAIFTKIKPNEVSYGI---------------GNNEHDGE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T++++++YL+NVY P ++ L+ L + W+ ++
Sbjct: 89 ------------------GRVITLKFDEYYLLNVYTPNSQRGLTRLEYRQKWDQDFLNYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPV+ GDLNVAH ID+ P TN+ +GFT +ERN F N ++ GFLD R
Sbjct: 131 KTLENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDNIVNSGFLDTFREFN 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ +K GWR+DYF ISK LK +L D I +V GSDH P
Sbjct: 191 KEPDNYSWWSYRFNARAKNIGWRIDYFCISKSLKGNLKDAFIMPEVMGSDHCP 243
>gi|374315128|ref|YP_005061556.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350772|gb|AEV28546.1| exodeoxyribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 271
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 157/299 (52%), Gaps = 55/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA QK GF ++ + D ++FC+QE + +++
Sbjct: 24 KLISWNVNGLRA-------------CQKKGFEEYLSRADADIFCLQETKLQEDQIALDKL 70
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH FW ++GY+G A+ SK +P+ V S E G ++S
Sbjct: 71 SYHTFWSFAEKKGYSGTALFSKIQPISV--------------------SREIGHPLDS-- 108
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR +T E+E ++++ Y P ++E L+ + +++ W++ R ++
Sbjct: 109 -----------------EGRTVTAEFEDYFVICCYTPNSQEKLARIELRMDWDAAFRKYV 151
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV++ GDLNVAHN ID+ P N +G++IQER FS L GF D R+LY
Sbjct: 152 SDLDKKKPVLICGDLNVAHNPIDLKNPKQNEQNAGYSIQERQGFSTLLASGFTDSFRYLY 211
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ Y++W Y + K GWR+DY+L SK+ + H+ D I V GSDHAP +L L
Sbjct: 212 PDKTDAYSWWSYRFHAREKNIGWRIDYWLASKRFEQHIKDSIIEDQVLGSDHAPVVLVL 270
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 177 bits (448), Expect = 4e-41, Method: Composition-based stats.
Identities = 97/294 (32%), Positives = 152/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F ++ + ++FC+QE + +++P E
Sbjct: 2 KLISWNVNGIRACV-------------KNGFLDFFQKENADIFCLQETKVQADQIPFNLE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P+++ +G G EH +
Sbjct: 49 GYYQYWNFAQKKGYSGTAIFTKKEPMKICYGI---------------GQEEHDKE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+ Y+V VY P ++ L+ L ++ W +
Sbjct: 89 ------------------GRVITLEFEKHYVVTVYTPNSQRGLARLEYRMKWEEEFLKFI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L + KPV+ GDLNVAH ID+ P +N +GF+++ERN F + GF+D R+ Y
Sbjct: 131 KDLEKNKPVIFCGDLNVAHEEIDLKNPSSNRKNAGFSMEERNKFGEIIKSGFIDTFRYFY 190
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YT+W Y ++ GWR+DYF +S+ LK L I+ DV GSDH P
Sbjct: 191 PDKTNAYTWWSYMFNARVNNAGWRIDYFCVSEILKDRLKAAVIYNDVMGSDHCP 244
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 53/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG RA + K F +F + D + FC+QE + + PEG
Sbjct: 2 KFISWNVNGFRA--VLKKGFEDVF----------KDLDADFFCLQETKMQEGQADFHPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G A+ +K P+RV +G K H
Sbjct: 50 YHEYYSYADKKGYSGTAIFAKEAPLRVAYGIEGK-----HN------------------- 85
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GRV+T+EY+ FYL+ Y P ++++L + ++ + LR ++
Sbjct: 86 ---------------DEGRVITLEYDDFYLICAYVPNSQDELKRIDYRMEYEDDLRAYMS 130
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+++KPVV GDLNVAH ID+ P +N G +GF+ +ER+ + L GF D +RHL+P
Sbjct: 131 KLDKVKPVVYCGDLNVAHEEIDLKNPKSNRGNAGFSDEERSKMTELLGAGFTDTYRHLHP 190
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ +Y++W Y ++ + GWR+DYF++S +L++ + + I DV GSDH P L L
Sbjct: 191 DTPGVYSWWSYRFNARANNAGWRIDYFIVSNRLETKIKEAAILTDVYGSDHCPVSLVL 248
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPVELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 110 ELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ EY+ F LV Y P A L L + W+
Sbjct: 153 QE---------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ + L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 147/293 (50%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F+ + + CIQE + ++
Sbjct: 10 KMISWNVNGIRA-------------CLKNGFMDFLNSKNPEIICIQETKVQKGQVQLGLN 56
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K +P V +G + + SD E
Sbjct: 57 GYFEYWNYAEKKGYSGTAIFTKIEPKSVKYGIT-----------------NYKSDKE--- 96
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+++LVNVY P ++ L L + W+ HL
Sbjct: 97 ------------------GRVITLEFEEYFLVNVYTPNSQRGLKRLECRQKWDKDFLNHL 138
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L + KPV+ GDLNVAH ID+ P N+ +GFT +ERN F N ++ GFLD R L
Sbjct: 139 KTLEQKKPVIFCGDLNVAHKEIDLKNPKQNIKNAGFTKEERNGFDNLINSGFLDTFRELN 198
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W Y ++ K GWR+DYF ISK+L+ L D I +V GSDH P
Sbjct: 199 NEPENYTWWSYRFNAREKNIGWRIDYFCISKKLRERLKDAFIMSEVLGSDHCP 251
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 176 bits (447), Expect = 5e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis sativus]
Length = 501
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 165/343 (48%), Gaps = 74/343 (21%)
Query: 716 NDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIF 759
N+P+ +L HK+ Q + P+N KI SWNVNG+RA
Sbjct: 208 NEPWVVLAHKKPQKGWIPYNPRIMRPKPLSKDTKSVKILSWNVNGLRA-----------L 256
Query: 760 LQQKDGFSFMRQHDLNVFCIQEIRCP----LEKLPECPEGYH-AFWFPG-TRQGYAGVAV 813
L+ + D +V C+QE + L +GYH +W ++ GY+G A+
Sbjct: 257 LKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTYWTCSVSKLGYSGTAI 316
Query: 814 LSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG 873
+S+ KP+ V +G G +EH + G
Sbjct: 317 ISRIKPISVRYGL---------------GISEHDGE-----------------------G 338
Query: 874 RVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVA 932
RV+ VE++ F+L+NVY P + + L LS ++ W+ L ++K L + KPV+L GDLN A
Sbjct: 339 RVVMVEFDSFFLLNVYVPNSGDGLKRLSYRITQWDPSLSNYIKELEKSKPVILTGDLNCA 398
Query: 933 HNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK 991
H ID+ P N +GFT +ER F +NFL GF+D R +P+ YTYW Y K
Sbjct: 399 HQEIDLYNPAGNRKSAGFTNEERQSFETNFLQKGFVDTFRQKHPDVVGYTYWGYRHGGRK 458
Query: 992 M-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+++ + D I DV GSDH P L L L
Sbjct: 459 TNKGWRLDYFLVSERVAEKVHDSYILPDVGGSDHCPIGLVLKL 501
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 176 bits (447), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F D +VFCIQE + + +G
Sbjct: 2 KMISWNVNGLRA------------CMTKGFMDFFNTIDADVFCIQESKMHRSQSDFVFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ FW ++GY+G +LSKT+P+ V +DM G +
Sbjct: 50 YYQFWNEAEKKGYSGTIILSKTEPLSVC------------------------NDM--GIA 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++ EY F+LVNVY P +K +L L+ + W R LK
Sbjct: 84 HHD------------KEGRIIVAEYATFFLVNVYTPNSKRELERLTYRQEWEDDFRSFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ P TN +GFT +ER S LD GF+D +R+ YP
Sbjct: 132 GLEQYKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVLLDSGFIDSYRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + + GWR+DYFL+S+ L +L + I+ ++ GSDH P
Sbjct: 192 DKEHAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAHIYPEIMGSDHCP 244
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 176 bits (447), Expect = 5e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 176 bits (447), Expect = 5e-41, Method: Composition-based stats.
Identities = 102/295 (34%), Positives = 145/295 (49%), Gaps = 53/295 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
K+ +WNVNGIR+ L + Q D + C+QE + E++ E
Sbjct: 2 KLTTWNVNGIRSVLNKGALQEYVLEAQPD-----------ILCLQETKAQPEQVDLGMEF 50
Query: 795 -GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GYHA+W ++GY+G A+ +K +P+ V +G G EH
Sbjct: 51 AGYHAYWNSAVKKGYSGTAIFTKEEPISVQYGL---------------GIEEHDQ----- 90
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GRV+T EY +YLV VY P AK DL+ LS + +W
Sbjct: 91 ------------------EGRVITAEYADYYLVTVYTPNAKRDLTRLSYRQVWEDDFLAF 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+K L E KPV+ GDLNVAH ID+A P TN +GFT +ER F ++ G +D R
Sbjct: 133 IKKLEETKPVIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREKFDQIVENGLVDAFRFR 192
Query: 974 YPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP YT+W Y ++ GWR+DYF++S+ L S + +++I DV GSDH P
Sbjct: 193 YPEAVGAYTWWSYMGGARARNIGWRIDYFVVSEVLTSRIQEVKIRADVTGSDHCP 247
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 176 bits (447), Expect = 5e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 176 bits (447), Expect = 5e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New Crystal
Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New Crystal
Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New Crystal
Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With Product
Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With Product
Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With Product
Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With Product
Dna And Mg2+
Length = 317
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 58 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 105
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 106 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 150
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 151 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 187
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 188 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 247
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 248 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 307
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 308 HCPITLYLAL 317
>gi|189235831|ref|XP_966759.2| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 344
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 131/256 (51%), Gaps = 54/256 (21%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
NF I +WNV G+R+W +K ++ + ++ CIQE +C ++KLPE
Sbjct: 136 NFHITTWNVGGLRSW------------LKKGCLDILKYDEPDILCIQETKCAVDKLPEEV 183
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EGY W + GYAGV ++ K KP+ V +G S EH ++
Sbjct: 184 KTIEGYETLWCSSDKDGYAGVGIMVKDKPLNVIYGID---------------SKEHDTE- 227
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GR +TVEYE F++VNVY P A L L +L WN
Sbjct: 228 ----------------------GRCITVEYETFFVVNVYVPNAGRKLVTLPKRLDWNEQF 265
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+K+L+ KPV++ GD+NVAH ID+A P TN +GFT++ER+ + FL G++D++
Sbjct: 266 EKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTKNAGFTVEERDGMTAFLGNGYVDIY 325
Query: 971 RHLYP-NHRIYTYWPY 985
RHLYP + YT+W Y
Sbjct: 326 RHLYPEKEKAYTFWTY 341
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 103/293 (35%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA ++K +F Q D + FCIQE + ++ G
Sbjct: 2 KLISWNVNGLRA------------CREKGFEAFFAQEDADFFCIQETKLQAGQIQLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G AV +K P+ V F + P+
Sbjct: 50 YNQYWHYADKKGYSGTAVFTKHIPLSVQRDFGL-------------------------PA 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H +GRV+T+EY FYLVN Y P +K +L L ++ W LR +L
Sbjct: 85 HN-------------GEGRVLTLEYPDFYLVNAYVPNSKRELLRLDYRMEWEDALRQYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+ GDLNVAH ID+ P +N +GFT +ER S LD GF D R LYP
Sbjct: 132 GLDARKPVIYCGDLNVAHREIDLKNPKSNRRNAGFTDEERGRLSTLLDSGFTDTFRLLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + K GWR+DYF++S ++ + D I+ DV GSDH P
Sbjct: 192 DTAGAYTWWSYMFHAREKNAGWRIDYFIVSNRIAPLVQDSLIYKDVLGSDHCP 244
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA +NK F I ++ D ++FCIQE + ++ G
Sbjct: 2 KLISWNVNGIRA--CINKGFYDI----------LKDFDADIFCIQETKMQEGQIEIEDHG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V +K KP+ ++G +++ EH +
Sbjct: 50 YYLYMNSAVKKGYSGTLVFTKVKPLSYSYGINIE---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY +FYLVN Y P +++ L L + +W +LK
Sbjct: 89 -----------------GRVITLEYNKFYLVNCYTPNSQDGLKRLEYRQVWEDDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL E KPV+L GDLNVAH ID+ P TN +GF+ +ER + L+ GF+D R+LYP
Sbjct: 132 SLEEKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTQLLNHGFIDTFRYLYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y ++ GWR+DYF++S LK + D I D+ GSDH P
Sbjct: 192 DLQGAYSWWSYRFNARKNNAGWRIDYFIVSDCLKEKIKDAYIFKDIMGSDHCP 244
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 150/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V+K F F F FC+QE + +L G
Sbjct: 3 KFVSWNVNGLRA--CVSKDFAQTFETLNADF----------FCLQETKMQAGQLDLQFPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +FW ++GY+G A+ ++ +P+ V +G G +EH
Sbjct: 51 YTSFWNYADKKGYSGTAIYARKEPLSVAYGI---------------GIDEHDH------- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EYE FYLVNVY P A++ L L ++ W + +L
Sbjct: 89 ----------------EGRVITLEYEDFYLVNVYTPNAQDGLRRLDYRMTWEDDFQAYLH 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF D R+LYP
Sbjct: 133 RLDARKPVIVCGDMNVAHEEIDLKNPKTNHRNAGFTDEERAKMTQLLGNGFTDTFRNLYP 192
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y R K GWR+DYFLIS +L+ L + IH ++ GSDH P + L+L
Sbjct: 193 EAIKYSWWSYRFRAREKNTGWRIDYFLISDRLRPRLKEAAIHNEIFGSDHCPVEVDLDL 251
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 155/305 (50%), Gaps = 59/305 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D +++++ ++ C+QE + ++ E
Sbjct: 1 MKLISWNVNGLRA-----------VMKKIDINTYVQETKADILCLQETKVQDGQVSLQLE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W ++GY+G AV SK KP+ V +G
Sbjct: 50 GYHDYWNYAVKKGYSGTAVFSKEKPLHVFYGL---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GIDD GRV+T+E+E ++VN Y P AK L + +L W +
Sbjct: 82 --------------GIDDHDQEGRVITLEFENLFVVNCYTPNAKRGLERIDYRLQWEADF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ L+ KPV+L GDLNVAH ID+ P N +GF+ QER FS L+ GF D
Sbjct: 128 KEYLQKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFSALLNTGFTDSF 187
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R+LYP+ Y++W Y + K GWRLDY ++S +LK +S+ I D+ GSDH P
Sbjct: 188 RYLYPDREGGYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAICADIMGSDHCPVE 247
Query: 1029 LYLNL 1033
+ ++L
Sbjct: 248 MTVDL 252
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ +WNVNG+RA K F ++ D +V C+QE + +++ G
Sbjct: 2 RLVTWNVNGLRA------------CLGKGFLDFFQRVDADVVCLQETKLQPDQIALELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+G AV ++ +P+ VT G +G H H
Sbjct: 50 YRLFWNSAEKKGYSGTAVFTRVEPLSVTCG----IGLDAHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E++ F+LV Y P A+ +L+ + ++ W R +L
Sbjct: 88 ----------------EGRVITAEFDGFFLVCCYTPNAQNELARIDYRMQWEDDFRAYLM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPVVL GDLNVAH ID+ P +N G +GF+ QER + L GF D R LYP
Sbjct: 132 ELDKKKPVVLCGDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTELLSSGFTDTFRALYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y ++ GWR+DYF++S +L + D IH +VEGSDH P L L+
Sbjct: 192 DRTGAYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVEGSDHCPVELVLD 250
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1 [Callithrix
jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2 [Callithrix
jacchus]
Length = 318
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 176 bits (446), Expect = 6e-41, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 64 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 111
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 112 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 156
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ EY+ F LV Y P A L L + W+
Sbjct: 157 -----------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 193
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 194 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 253
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 254 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKALGSDHCP 313
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 314 ITLYLAL 320
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 176 bits (446), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 149/292 (51%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F + F + + + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRA--CVGKDFEAQF----------KTLNADFFCLQETKMQAGQLYLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ P+ VT+G +G H H
Sbjct: 50 YQSYWNYADKRGYSGTAIYTRHTPLSVTYG----IGVDAHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E FYLV VY P ++++L L ++ W + L
Sbjct: 88 ----------------EGRVITLEMNDFYLVTVYTPNSQDELKRLDYRMTWEDDFKTFLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV++ GD+NVAH ID+ P TN +GFT +ER + LD GF D R +YP
Sbjct: 132 ALDARKPVIVCGDMNVAHQEIDIKNPKTNRRNAGFTDEEREKMTVLLDSGFTDTFRFMYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + + GWR+DYFL+S +LK ++D +IH D+ GSDH P
Sbjct: 192 EEVTYSWWSYRFKARERNTGWRIDYFLVSDRLKPQIADAKIHTDILGSDHCP 243
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 176 bits (445), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA +K + + + + FC+QEI+ +L EGY
Sbjct: 5 SWNVNGLRA------------CIKKGFLDYFNEINADFFCLQEIKMSEGQLDLELEGYET 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
++ R+GY+G A+ +K P+ V +G G EH
Sbjct: 53 YYNYAQRKGYSGTAIFTKYTPLSVKYGM---------------GIEEHD----------- 86
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
++GR++T+EYE F+LV Y P +K++L L +++W R +L LN
Sbjct: 87 ------------NEGRLITLEYEDFFLVTCYTPNSKQELLRLDYRMVWEDAFRNYLLELN 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-H 977
+ K V++ GDLNVAH ID+ P TN +GFT QER S LD GF D R+ YP+
Sbjct: 135 KTKSVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKMSILLDSGFTDTFRYFYPDKE 194
Query: 978 RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
Y++W Y+ + + GWR+DYFL SK + L D +IH + GSDH P L
Sbjct: 195 NEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQRILGSDHCPVYL 247
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 176 bits (445), Expect = 8e-41, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
LR LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 LRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 158/301 (52%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA V F +F ++ D ++FCIQE + ++ E P
Sbjct: 2 KLISWNVNGLRA--AVKHGFLDVF----------KELDADIFCIQETKLQEGQIELELPH 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ +K KP+ V +G G +H +
Sbjct: 50 -YYQYWNYAEKKGYSGTAIFTKKKPLTVRYGL---------------GIEKHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+FY++ Y P ++ L L ++ W+ R ++
Sbjct: 89 ------------------GRVITLEFEKFYVITCYTPNSQPKLKRLEYRMAWDDAFRAYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
LN+ KPV+ GDLNVAH ID+ TN +GFT +ERN F+ L+ GF D +R+ Y
Sbjct: 131 DQLNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNKFTQLLNSGFTDTYRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ +Y++W Y ++ + GWR+DYF+ SK L L+D +IH ++ GSDH P L L+
Sbjct: 191 PSKEGVYSWWSYRFNARANNAGWRIDYFVSSKVLDQKLTDAQIHTEIFGSDHCPVELDLD 250
Query: 1033 L 1033
+
Sbjct: 251 I 251
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 176 bits (445), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 164/318 (51%), Gaps = 50/318 (15%)
Query: 720 RILEHKRRQ-DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFC 778
R++E K+++ + KI SWNV G+RAW + KDG S + + + ++
Sbjct: 35 RVMERKKKKVGKSGREIKIISWNVAGLRAWIK------------KDGHSILVKENPDIVA 82
Query: 779 IQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHG 838
+QE +C +E E GY++F + G+ GV +L+K +P++VT+ F K
Sbjct: 83 LQETKC-VEVPNELQNGYYSFLNTSEKSGHGGVLLLTKEEPIKVTYTFDDK--------- 132
Query: 839 FNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLS 898
++ G D G GR++ EYE +YL+N Y P + L
Sbjct: 133 -----SKSGLD-------------------GNGKGRIIIAEYENYYLINAYVPNSGRGLV 168
Query: 899 MLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNY 957
L + W+ +K L+ KP+V GDLNVAH ID+A P TN K +GFT QERN
Sbjct: 169 NLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAGFTDQERND 228
Query: 958 FSNFLDLGFLDVHRHLYPNHR-IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEI 1015
F+ LD GF+DV R L P +YT+W + K GWRLDYF++S+++ + + + +I
Sbjct: 229 FTRLLDAGFVDVFRRLNPEKEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI 288
Query: 1016 HGDVEGSDHAPQILYLNL 1033
V+GSDH P L + L
Sbjct: 289 LCSVKGSDHCPLSLTIEL 306
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 176 bits (445), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 150/289 (51%), Gaps = 51/289 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA V+K F F + D + FC+QE + +L EGY +
Sbjct: 5 SWNVNGLRA--CVSKGFEESF----------KALDADFFCLQETKMQEGQLNLQFEGYDS 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G A+ +K KP+ VT+G ++ H H
Sbjct: 53 YWNYAEKKGYSGTAIYTKHKPLNVTYGLGIEE----HDH--------------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+T+E E FYL+ VY P ++++L L+ ++ W +++ L+
Sbjct: 88 -------------EGRVITLEMEDFYLITVYTPNSQDELRRLNYRMTWEDDFLKYIQGLD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KPV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF D R+ YP
Sbjct: 135 AKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDSFRYKYPEQV 194
Query: 979 IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYFLIS +L+ L D +IH +V GSDH P
Sbjct: 195 TYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTEVYGSDHCP 243
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 175 bits (444), Expect = 1e-40, Method: Composition-based stats.
Identities = 103/293 (35%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 13 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 60
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVAV +K KP+ VT+G G EH
Sbjct: 61 YYDYWNYAAKKGYSGVAVFTKDKPIGVTYGI---------------GIEEHD-------- 97
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T EY+ FYL+ Y P ++ L+ L ++ W ++
Sbjct: 98 ---------------NEGRVITAEYDDFYLITCYTPNSQRGLTRLDYRMAWEDAFLDYVL 142
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER L GF D R LYP
Sbjct: 143 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDIVLSSGFADSFRVLYP 202
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y +K GWR+DYF++S +LK + + +IH D+ GSDH P
Sbjct: 203 DKEGAYSWWSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSDILGSDHCP 255
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 8 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 55
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ S
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------S 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 91 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 137
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 138 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 197
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 198 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 250
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 148/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F D +VFCIQE + E+
Sbjct: 6 KLISWNVNGLRA--CMNKGFMDFF----------NTIDADVFCIQESKMQKEQATFDFPN 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GVA+ SK KP+ V + DM G S
Sbjct: 54 YEEYWNSAEKKGYSGVAIFSKKKPLSVAY------------------------DM--GIS 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T EY F+LVNVY P +K +L L ++ W R LK
Sbjct: 88 HHD------------KEGRIITAEYNDFFLVNVYTPNSKRELERLEYRMEWEDDFRNFLK 135
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GDLNVAH ID+ P TN +GFT +ER S LD GF D R+ +P
Sbjct: 136 NLEVTKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVLLDSGFTDTFRYFHP 195
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
Y++W Y + + GWR+DYFL SK L S L I+ ++ GSDH P L +N
Sbjct: 196 TLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPEIFGSDHCPVGLEIN 254
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 52/295 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N K SWNVNG+RA + K F F + + + FC+QE + ++
Sbjct: 3 NLKYISWNVNGLRA--CIKKGFLDSF----------KNLNADCFCLQETKLQPHQIELDI 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY+ +W ++GY+G A+ +K KP+ V++G +++ EH +
Sbjct: 51 PGYYQYWNSAIKKGYSGTALFTKIKPISVSYGMNIE---------------EHDQE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++T E++ +LV Y P ++ L+ L ++ W + + +
Sbjct: 92 -------------------GRLITAEFKNHFLVVCYTPNSQRQLARLEYRMKWENDFKNY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L E KPV+L GDLNVAH ID+A P +N +GFT ER FS L+ GF D R+L
Sbjct: 133 LLKLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFSTLLENGFTDTFRYL 192
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP+ + Y++W Y+ + + GWR+DYFL+S +LK+ + D +IH +++GSDH P
Sbjct: 193 YPDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQGSDHCP 247
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 149/289 (51%), Gaps = 51/289 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA V+K F F + D + FC+QE + +L EGY +
Sbjct: 5 SWNVNGLRA--CVSKGFEESF----------KALDADFFCLQETKMQEGQLNLQFEGYDS 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G A+ +K KP+ VT+G ++ H H
Sbjct: 53 YWNYAEKKGYSGTAIYTKHKPLNVTYGLGIEE----HDH--------------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+T+E E FYL+ VY P ++++L L ++ W +++ L+
Sbjct: 88 -------------EGRVITLEMEDFYLITVYTPNSQDELRRLDYRMTWEDDFLKYIQGLD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KPV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF D R+ YP
Sbjct: 135 AKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDSFRYKYPEQV 194
Query: 979 IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYFLIS +L+ L D +IH +V GSDH P
Sbjct: 195 TYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTEVYGSDHCP 243
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 175 bits (444), Expect = 1e-40, Method: Composition-based stats.
Identities = 100/299 (33%), Positives = 153/299 (51%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF + + ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRAC-------------LKKGFLEYFNEVSGDIFCVQETKLQEGQIDLELP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K +P+ V +G G +H +
Sbjct: 49 GYFQYWNYAEKKGYSGTAIFTKIQPLTVQYGI---------------GEAKHDKE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+ +YLVNVY P ++ +L+ L +L W + +L
Sbjct: 89 ------------------GRVITLEFCDYYLVNVYTPNSQRELARLDYRLQWEDAFKNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+L+ KPV++ GDLNVAH ID+ P N +GFT +ERN + L+ GF+D R+ Y
Sbjct: 131 VNLDSEKPVIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTELLNAGFIDTFRYFY 190
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ YT+W Y + + GWR+DYFL S++L + L+D EIH D+ GSDH P L L
Sbjct: 191 PDTEGAYTWWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIHADIMGSDHCPVALKL 249
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ S
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------S 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F ++ D ++FCIQE + ++ G
Sbjct: 2 KLVSWNVNGLRA------------CMGKGFMDFFKEADADIFCIQESKLQEGQISLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTAIFTKEEPLSVSYGL---------------GLEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+ FY+V VY P +++ L+ L ++ W +LK
Sbjct: 89 -----------------GRVITLEFPDFYMVTVYTPNSQDGLARLDYRMTWEEEFLKYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVAH ID+ P TN +GFT +ER FS L+ GF+D R+ YP
Sbjct: 132 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFSVLLENGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ + Y++W Y + K GWR+DYFL+S QLK L D I+ DV GSDH P L L
Sbjct: 192 DLKDAYSWWSYRFHAREKNAGWRIDYFLVSPQLKERLEDAVIYKDVFGSDHCPVALIL 249
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F R D ++FCIQE + ++ G
Sbjct: 10 KMISWNVNGLRA--AVTKGF----------LDFFRDIDADIFCIQESKLSEGQIELDLPG 57
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVAV +K KP+ VT+G G EH
Sbjct: 58 YYDYWNYAQKKGYSGVAVFTKDKPLNVTYGI---------------GIEEHD-------- 94
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T EYE FY++ Y P ++ L+ L ++ W ++
Sbjct: 95 ---------------NEGRVITAEYEDFYMITCYTPNSQRGLTRLEYRMTWEDAFLKYIL 139
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAH ID+ P TN +GFT +ER L GF+D R LYP
Sbjct: 140 ELEKNKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKMDVILSSGFVDSFRVLYP 199
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y +K GWR+DYF++S +LK + + +IH ++ GSDH P
Sbjct: 200 DKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEIFGSDHCP 252
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 148/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ F + + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKDFSQSF----------ESLNADFFCLQETKMQAGQLELQFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ +P+ V++G G +EH +
Sbjct: 50 YTSYWNYAEKKGYSGTAIYTRKEPLAVSYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY++F+LV VY P A+E+L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDKFFLVTVYTPNAQEELRRLDYRMTWEDAFQAYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ER+ + L GF D R L+P
Sbjct: 132 QLDAKKPVIVCGDMNVAHQEIDLKNPKTNRRSAGFTDEERSKMTQLLSNGFTDTFRTLHP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y+YW Y R K GWR+DYFLIS +L+ L IH ++ GSDH P
Sbjct: 192 EQITYSYWSYRFRAREKNAGWRIDYFLISDRLRPQLKGASIHTEIYGSDHCP 243
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 22 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 69
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 70 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 104
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 105 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 151
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 152 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 211
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 212 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 264
>gi|365832959|ref|ZP_09374485.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|374627690|ref|ZP_09700093.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
gi|365259792|gb|EHM89775.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|373913138|gb|EHQ44980.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
Length = 251
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 157/300 (52%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F + +++ ++FC+QE + ++ G
Sbjct: 2 KLVSWNVNGIRA--CITKGF----------YDVLKESKADIFCVQETKMQEGQIELEKHG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ + ++GY+G V SK KP+ ++G +G H H
Sbjct: 50 YYTYMNSAEKKGYSGTLVFSKEKPLNYSYG----IGIEEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EYE+FYLVN Y P ++ +L L ++ W +LK
Sbjct: 88 ----------------EGRVVTLEYEKFYLVNCYTPNSQNELKRLDYRMHWEDDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL + KPV+L GDLNVA+ ID+ P TN +GF+ +ER +N L+ GF+D +R+LYP
Sbjct: 132 SLEKSKPVILCGDLNVAYQEIDLKNPKTNRKNAGFSDEERAKMTNLLENGFIDTYRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ GWR+DYF++S LK + + I D+ GSDH P L ++L
Sbjct: 192 DQEGVYSWWSYRFNARKNNAGWRIDYFIVSDCLKEGIKEAFICTDILGSDHCPVGLEIDL 251
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 149/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F IF ++ D + FCIQE + +L G
Sbjct: 2 KFISWNVNGLRA--VVKKDFAEIF----------QKLDADFFCIQETKMQEGQLKLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ +K +P+ V++G
Sbjct: 50 YRQYFNYAERKGYSGTAIFAKDEPLTVSYGIQA--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GR +T+EY FYLV Y P + L L ++ W+ +L
Sbjct: 83 -PEFDH----------EGRAITLEYPNFYLVTSYVPNSGAKLKRLDFRMGWDKAFHAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH+ ID+ P +N +GFT +ER F+ LD GF+D RH YP
Sbjct: 132 QLDSHKPVILCGDLNVAHHEIDLKNPQSNHHNAGFTDEERQSFTKLLDQGFMDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y + + GWR+DYF+ SK+L H+SD +I D+ GSDH P L N
Sbjct: 192 DKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFGSDHCPVELLTN 250
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|422684833|ref|ZP_16743058.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G + TH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLG------IETHD----------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 87 ---------------QEGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 175 bits (443), Expect = 1e-40, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWIKEEAPDILCLQETKCSENKLPVELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ EY+ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQCWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL-D 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L L D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAAPLTD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ L L D +I GSDH P
Sbjct: 252 SFRHLYPNRAYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 164/343 (47%), Gaps = 74/343 (21%)
Query: 716 NDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIF 759
N+P+ +L HK+ Q + P+N KI SWNVNG+RA
Sbjct: 208 NEPWVVLAHKKPQKGWIPYNPRIMRPKPLSKDTKSVKILSWNVNGLRA-----------L 256
Query: 760 LQQKDGFSFMRQHDLNVFCIQEIRCP----LEKLPECPEGYH-AFWFPG-TRQGYAGVAV 813
L+ + D +V C+QE + L +GYH +W ++ GY+G A+
Sbjct: 257 LKGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTYWTCSVSKLGYSGTAI 316
Query: 814 LSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG 873
+S+ KP+ V +G G +EH + G
Sbjct: 317 ISRIKPISVRYGL---------------GISEHDGE-----------------------G 338
Query: 874 RVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVA 932
RV+ VE++ F L+NVY P + + L LS ++ W+ L ++K L + KPV+L GDLN A
Sbjct: 339 RVVMVEFDSFXLLNVYVPNSGDGLKRLSYRITQWDPSLSNYIKELEKSKPVILTGDLNCA 398
Query: 933 HNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK 991
H ID+ P N +GFT +ER F +NFL GF+D R +P+ YTYW Y K
Sbjct: 399 HQEIDLYNPAGNRKSAGFTNEERQSFETNFLQKGFVDTFRQKHPDVVGYTYWGYRHGGRK 458
Query: 992 M-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+++ + D I DV GSDH P L L L
Sbjct: 459 TNKGWRLDYFLVSERVAEKVHDSYILPDVGGSDHCPIGLVLKL 501
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 163/321 (50%), Gaps = 56/321 (17%)
Query: 720 RILEHKRRQ-DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFC 778
R++E K+++ + KI SWNV G+RAW + KDG S + + + ++
Sbjct: 42 RVMERKKKKVGKSGREIKIISWNVAGLRAWIK------------KDGHSILVKENPDIVA 89
Query: 779 IQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHG 838
+QE +C +E E GY++F + G+ GV +L+K +P++VT+ F K
Sbjct: 90 LQETKC-VEVPNELQNGYYSFLNTSEKSGHGGVLLLTKEEPIKVTYTFDDK--------- 139
Query: 839 FNRGSNEHGSDMESGPSHPELTTIQYADASGIDD---GRVMTVEYEQFYLVNVYAPAAKE 895
SG+D GR++ EYE +YL+N Y P +
Sbjct: 140 ---------------------------SKSGLDGNGKGRIIIAEYENYYLINAYVPNSGR 172
Query: 896 DLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQE 954
L L + W+ +K L+ KP+V GDLNVAH ID+A P TN K +GFT QE
Sbjct: 173 GLVNLDKRKFWDDCYFSFIKKLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAGFTDQE 232
Query: 955 RNYFSNFLDLGFLDVHRHLYPNHR-IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSD 1012
RN F+ LD GF+DV R L P +YT+W + K GWRLDYF++S+++ + + +
Sbjct: 233 RNDFTRLLDAGFVDVFRRLNPEKEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNKVKE 292
Query: 1013 LEIHGDVEGSDHAPQILYLNL 1033
+I V+GSDH P L + L
Sbjct: 293 CDILCSVKGSDHCPLSLTIEL 313
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 149/298 (50%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +NK F F + + ++FCIQE + E+ E
Sbjct: 2 KLISWNVNGLRA--CMNKGFMDFF----------NEVNADIFCIQESKMCKEQAQFHFEN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+GV +LSKT+P+ V + DM
Sbjct: 50 YKEYWNSAEKKGYSGVVILSKTQPINVAY------------------------DM----- 80
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
I Y D +GR++T EY FYLVNVY P +K +L L ++ W R +K
Sbjct: 81 -----GITYHDK----EGRIITAEYPHFYLVNVYTPNSKRELERLDYRMKWEDDFRAFVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L K V++ GDLNVAH ID+ P TN +GFT +ERN S LD GF+D R+ YP
Sbjct: 132 NLENHKSVIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKMSALLDAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y + + GWR+DYFL S+ L L D I+ + GSDH P L L
Sbjct: 192 TLTGAYSWWSYMGKARENNTGWRIDYFLCSQSLTPSLKDANIYPHIFGSDHCPVGLEL 249
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 8 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 55
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 91 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 137
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 138 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 197
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 198 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 250
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 175 bits (443), Expect = 2e-40, Method: Composition-based stats.
Identities = 103/296 (34%), Positives = 149/296 (50%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 10 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 56
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V +G G EH +
Sbjct: 57 QYFYSAEKKGYSGTAIFTRVKPLSVAYGL---------------GIEEHDHE-------- 93
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
GRV+T+E+E YLV VY P +K L+ L +L+W R L L
Sbjct: 94 ---------------GRVITMEFEDIYLVTVYTPNSKNALARLDYRLVWEDAFRAFLLDL 138
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER + L GF+D R LYP+
Sbjct: 139 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKLTELLGAGFIDTFRALYPDL 198
Query: 978 R-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L
Sbjct: 199 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHADVFGSDHCPVSLTL 254
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|422714823|ref|ZP_16771549.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
gi|422717962|ref|ZP_16774635.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWSYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA +K F + D ++FCIQE + +L
Sbjct: 2 KFISWNVNGIRA------------CVKKGFLDFFNETDADIFCIQESKMQEGQLDLNLPE 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G + +K +P+ V +G G EH +
Sbjct: 50 YHQYWNYAVKKGYSGTGIFTKEEPISVFYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ +Y + VY P ++ +L+ LS ++ W +LK
Sbjct: 89 -----------------GRVITLEFKDYYFITVYTPNSQSELARLSYRMKWEEDFLAYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KPV+ GDLNVA ID+ P TN +GFT +ER L+ GF+D R+LYP
Sbjct: 132 KLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTILNNGFIDTFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y ++ GWR+DYF++S+ LK +SD +I DV GSDH P
Sbjct: 192 DQTGIYSWWSYRFNARKNNAGWRIDYFIVSECLKDRISDAKILTDVMGSDHCP 244
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 174 bits (442), Expect = 2e-40, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 110 ELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQ- 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
+GRV+ E++ F LV Y P A L L + W+
Sbjct: 154 ----------------------EGRVIVAEFDTFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 PSTLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSESKLPS 108
Query: 791 ---ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ P + +W P ++GY+GV +LS+ P+ VT G G EH
Sbjct: 109 ELQDLPGLTYQYWSSPTDKEGYSGVGLLSRQCPLNVTFGI---------------GEEEH 153
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E+E F LV Y P A L L + W
Sbjct: 154 --DQE---------------------GRVIVAEFEAFVLVTAYVPNAGRGLVRLEYRQRW 190
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK LN KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 191 DEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 250
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYP YT+W Y + +K GWRLDYFL+S+ L L D +I GSD
Sbjct: 251 LTDSFRHLYPEAAYAYTFWTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSD 310
Query: 1024 HAPQILYLNL 1033
H P L L L
Sbjct: 311 HCPITLLLAL 320
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/342 (33%), Positives = 169/342 (49%), Gaps = 72/342 (21%)
Query: 717 DPFRILEHKRRQDQY-PWN--------------FKIGSWNVNGIRAWSQVNKLFTSIFLQ 761
+P+ +L HK+ Q + P+N K+ SWNVNG+RA + F+++ L
Sbjct: 134 EPWTVLSHKKPQKGWIPYNPRTMRPAPLTDGNSVKLMSWNVNGLRALLKFEG-FSALELA 192
Query: 762 QKDGFSFMRQHDLNVFCIQEIRCPLEK----LPEC-PEGY-HAFW-FPGTRQGYAGVAVL 814
Q++ F +V C+QE + K + +C +GY ++FW + GY+G A++
Sbjct: 193 QRENF--------DVLCLQETKLQASKDVDSIKQCLIDGYENSFWTCSNAKLGYSGTAIV 244
Query: 815 SKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR 874
S+ KP+ V +G + P H +GR
Sbjct: 245 SRIKPLSVCYGLGI-------------------------PDHDS-------------EGR 266
Query: 875 VMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAH 933
V+T E++ FYLVN Y P + + L LS ++ W+ L ++K L + KPV+L GDLN AH
Sbjct: 267 VVTAEFDSFYLVNTYVPNSGDGLKRLSYRITQWDPSLSNYMKELEKSKPVILTGDLNCAH 326
Query: 934 NHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM 992
ID+ P N +GFT +ER F SNFL G +D R +PN YTYW Y K
Sbjct: 327 QEIDIFNPAGNKRSAGFTEEERQSFGSNFLSKGLVDTFRKQHPNVVGYTYWGYRHGGRKT 386
Query: 993 -KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+ + + D I DV GSDH P L L +
Sbjct: 387 NKGWRLDYFLVSESIADKVHDSYIVPDVNGSDHCPIGLVLKV 428
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA +NK F F RQ D ++FCIQE + ++ +G
Sbjct: 2 RLISWNVNGLRA--CMNKGFMD----------FFRQIDADIFCIQESKMHPDQADFVFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+GV VLSK +P+ V + DM G
Sbjct: 50 YHGYWNSAEKKGYSGVVVLSKQEPLCVEY------------------------DM--GIE 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+ EY FYL+NVY P +K +L L ++ W LK
Sbjct: 84 HHD------------KEGRVICAEYPDFYLINVYTPNSKRELERLEYRMQWEDDFLNFLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KP+++ GDLNVAH ID+ P TN +GFT +ER + L+ GF+D R+ YP
Sbjct: 132 NLERKKPLIICGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMTTLLENGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y R + GWR+DYFL S+ L+ L + +I+ ++ GSDH P
Sbjct: 192 DLEGAYSWWSYMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEILGSDHCP 244
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 PSTLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSESKLPS 109
Query: 791 ---ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ P + +W P ++GY+GV +LS+ P+ VT G G EH
Sbjct: 110 ELQDLPGLTYQYWSSPTDKEGYSGVGLLSRQCPLNVTFGI---------------GEEEH 154
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D E GRV+ E+E F LV Y P A L L + W
Sbjct: 155 --DQE---------------------GRVIVAEFEAFVLVTAYVPNAGRGLVRLEYRQRW 191
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK LN KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 192 DEAFRKFLKGLNAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 251
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYP YT+W Y + +K GWRLDYFL+S+ L L D +I GSD
Sbjct: 252 LTDSFRHLYPEAAYAYTFWTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSD 311
Query: 1024 HAPQILYLNL 1033
H P L L L
Sbjct: 312 HCPITLLLAL 321
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|384519525|ref|YP_005706830.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|421513270|ref|ZP_15960049.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
gi|422687253|ref|ZP_16745435.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|422690983|ref|ZP_16749024.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|422710887|ref|ZP_16767822.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|422725430|ref|ZP_16781891.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
gi|401673644|gb|EJS80023.1| Exodeoxyribonuclease III [Enterococcus faecalis ATCC 29212]
Length = 251
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC 29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 150/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K+ SWNVNG+RA + K F F D ++F IQE + P + + P
Sbjct: 2 KLISWNVNGLRA--CLGKGFLESFAAL----------DADIFSIQETKMQPGQAELDLP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G AV ++ +P+ VT+G GS EH +
Sbjct: 49 GYKQYWNSAEKKGYSGTAVFTRLEPLNVTYGI---------------GSEEHDRE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR +T+E+E FYLVN Y P A+ +L+ L ++ W LR +L
Sbjct: 89 ------------------GRAITLEFEDFYLVNCYVPNAQRELTRLDWRMEWEDALRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPV+ GDLNVAH ID+ +N G +GFT +ER + L+ GF+D RHLY
Sbjct: 131 LELDSRKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQLLEAGFVDSFRHLY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + K GWR+DYFL+SK + + D IH ++ GSDH P
Sbjct: 191 PDKTGAYSWWSYMFHAREKNAGWRIDYFLVSKSIADKIGDSIIHPEIMGSDHCP 244
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 8 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 55
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 56 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 90
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 91 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 137
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 138 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 197
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 198 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 250
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1 [Felis
catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3 [Felis
catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4 [Felis
catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5 [Felis
catus]
Length = 318
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L+ + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLEAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA V K F F ++ D +VFC+QE + ++ G
Sbjct: 2 KFISWNVNGIRA--CVGKGF----------LDFFKEVDADVFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K +P++V +G +++ EH +
Sbjct: 50 YFQYWNYAERKGYSGTAIFTKKEPLKVMYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY V VY P ++ +L L + W +L
Sbjct: 89 -----------------GRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P N+ +GFT +ER FS LD GF+D +R+ P
Sbjct: 132 KLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDSGFIDTYRYFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYF SK+L+ L +IH +V GSDH P
Sbjct: 192 DKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEVLGSDHCP 244
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 151/298 (50%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA K F IF R D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRAVD--GKGFRDIF----------RAIDADFFCLQETKMQEGQLDIAFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ V G G +EH +
Sbjct: 50 YESYWNYAEKKGYSGTAIFTKHKPLSVQIGL---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E + FYLV VY P ++++L L +++W + HL
Sbjct: 89 -----------------GRVITLELDDFYLVCVYTPNSQDELRRLDYRMIWEEAFQAHLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P TN +GFT +ER + L GF+D R+ +P
Sbjct: 132 KLDAHKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLSNGFIDTFRYFHP 191
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y R K GWR+DYFL+S++LK L + IH D+ GSDH P L L
Sbjct: 192 DLTGAYSWWSYRFRAREKNTGWRIDYFLVSERLKPRLVEANIHNDIMGSDHCPVELIL 249
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium 7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium 7_1_58FAA]
Length = 250
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 150/299 (50%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ +WNVNG+RA K F ++ D +V C+QE + +++ G
Sbjct: 2 RLVTWNVNGLRA------------CLGKGFLDFFQRVDADVVCLQETKLQPDQIALELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FW ++GY+G AV ++ +P+ VT G +G H H
Sbjct: 50 YRLFWNSAEKKGYSGTAVFTRVEPLSVTCG----IGLDAHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T E++ F+LV Y P A+ +L+ + ++ W R +L
Sbjct: 88 ----------------EGRVITAEFDGFFLVCCYTPNAQNELARIDYRMQWEDDFRAYLM 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPVVL GDLNVAH ID+ P +N G +GF+ QER + L GF D R LYP
Sbjct: 132 ELDKKKPVVLCGDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTELLSSGFTDTFRALYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y ++ GWR+DYF++S +L + D IH +VEGSDH P L L+
Sbjct: 192 DRTGAYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVEGSDHCPVELVLD 250
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 109 ELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E+E F LV Y P A L L + W+
Sbjct: 154 -----------------------GRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLAD 250
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 251 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>gi|422696461|ref|ZP_16754419.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+++K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIVAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428767881|ref|YP_007153992.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186054|emb|CCO73278.1| exodeoxyribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 251
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFLDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 112/319 (35%), Positives = 148/319 (46%), Gaps = 58/319 (18%)
Query: 723 EHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI 782
+ K P KI SWNV+G+RAW + K G ++++ ++ C+QE
Sbjct: 50 DQKTSPSAKPATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQET 97
Query: 783 RCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTH 837
+C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 98 KCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI----------- 146
Query: 838 GFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL 897
G EH + GRV+ E++ F LV Y P A L
Sbjct: 147 ----GDEEHDQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGL 179
Query: 898 SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 180 VRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQG 239
Query: 958 FSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLE 1014
F L + D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +
Sbjct: 240 FGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSK 299
Query: 1015 IHGDVEGSDHAPQILYLNL 1033
I SDH P LYL L
Sbjct: 300 IRSKALASDHCPITLYLAL 318
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F IF ++ D + FCIQE + +L G
Sbjct: 2 KFISWNVNGLRA--VVKKDFAEIF----------QKLDADFFCIQETKMQEGQLKLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ +K +P+ V++G
Sbjct: 50 YRQYFNYAERKGYSGTAIFAKDEPLTVSYGIQA--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GR +T+EY FYLV Y P + L L ++ W+ +L
Sbjct: 83 -PEFD----------HEGRAITLEYPNFYLVTSYVPNSGAKLKRLDFRMGWDKAFHAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH ID+ P +N +GFT +ER F+ LD GF+D RH YP
Sbjct: 132 QLDSHKPVILCGDLNVAHYEIDLKNPQSNHHNAGFTDEERQSFTKLLDQGFMDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y + + GWR+DYF+ SK+L H+SD +I D+ GSDH P L N
Sbjct: 192 DKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFGSDHCPVELLTN 250
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 174 bits (441), Expect = 2e-40, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 109 ELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E+E F LV Y P A L L + W+
Sbjct: 154 -----------------------GRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 250
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 251 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 174 bits (441), Expect = 3e-40, Method: Composition-based stats.
Identities = 102/296 (34%), Positives = 148/296 (50%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMEAF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V +G + P H
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVAYGIGI-------------------------PEHD 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
+GRV+T+E+ YLV VY P AK L L ++ W R L L
Sbjct: 87 H-------------EGRVITMEFNDVYLVTVYTPNAKRALERLDYRMTWEDAFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F+ L+ GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLNAGFVDTFRALYPDL 193
Query: 978 R-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHADVFGSDHCPVSLTL 249
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 174 bits (441), Expect = 3e-40, Method: Composition-based stats.
Identities = 100/294 (34%), Positives = 142/294 (48%), Gaps = 53/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--P 793
K+ SWNVNG+RA + QK ++ +V C+QE +C + P
Sbjct: 2 KLVSWNVNGVRA------------VLQKGLLDYIAASGADVICLQETKCQPGDVQHVVWP 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY A+W ++GY+G A+ S+ +PV V+ G +
Sbjct: 50 AGYRAWWNAAQKKGYSGTAIFSRVEPVAVSCGLGL------------------------- 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
P H ++GRV+T E+ FYLVNVY P A+ +L L + WN+ +
Sbjct: 85 PDHD-------------NEGRVLTAEFADFYLVNVYVPNAQHELVRLPYRRRWNADFLSY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+SL + KPVV+ GD+NVAH ID+A P N+G +GF+ +ER FS L GF+D R
Sbjct: 132 LRSLEKKKPVVVCGDMNVAHQEIDLARPKENVGNAGFSNEEREDFSTMLRAGFVDTFREF 191
Query: 974 YPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + GWR+DYFL S L+ L I V GSDH P
Sbjct: 192 EKGPGHYSWWTYRAGARGRNIGWRIDYFLASAALRPRLKRAWIEPTVMGSDHCP 245
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla gorilla
gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla gorilla
gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla gorilla
gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla gorilla
gorilla]
Length = 318
Score = 174 bits (441), Expect = 3e-40, Method: Composition-based stats.
Identities = 111/310 (35%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P + +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSYQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|384514063|ref|YP_005709156.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|422703204|ref|ZP_16761029.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|422707239|ref|ZP_16764936.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|422720136|ref|ZP_16776759.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|422724491|ref|ZP_16780967.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|422734487|ref|ZP_16790776.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|422741447|ref|ZP_16795472.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|424672083|ref|ZP_18109064.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
gi|402357128|gb|EJU91842.1| exodeoxyribonuclease III [Enterococcus faecalis 599]
Length = 251
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 174 bits (440), Expect = 3e-40, Method: Composition-based stats.
Identities = 111/310 (35%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P + +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 151/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--VVGKGFVESF----------ETFGADFFCLQETKMQAGQLDISFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K KP+ VT+G ++ +EH +
Sbjct: 50 YESYWNYAEKKGYSGTAIFTKYKPLSVTYGMNI---------------DEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+E EQF+LV VY P +++ L L ++ W S +L
Sbjct: 89 -----------------GRIITLEMEQFFLVTVYTPNSQDGLRRLDYRMQWESDFLAYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KPV++ GD+NVAH ID+ P N +GFT +ER + L GF+D R L+P
Sbjct: 132 SLDCRKPVIVCGDMNVAHEEIDLKNPQNNRRNAGFTDEERQKMTTLLASGFVDTFRTLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYFLIS++L L + IH ++ GSDH P L LN+
Sbjct: 192 EEQKYSWWSYRFKAREKNVGWRIDYFLISERLVPQLVEATIHAEIMGSDHCPVELVLNI 250
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA V K F F ++ D ++FC+QE + ++ G
Sbjct: 7 KFISWNVNGIRA--CVGKGF----------LDFFKEVDADIFCLQETKLQEGQIELDLPG 54
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K +P++V +G +++ EH +
Sbjct: 55 YFQYWNYAERKGYSGTAIFTKKEPLKVMYGINIE---------------EHDKE------ 93
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY V VY P ++ +L L + W +L
Sbjct: 94 -----------------GRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLT 136
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P N+ +GFT +ER FS LD GF+D +R+ P
Sbjct: 137 KLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDSGFIDTYRYFNP 196
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYF SK+L+ L +IH ++ GSDH P
Sbjct: 197 DKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEILGSDHCP 249
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTGLLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 173/348 (49%), Gaps = 78/348 (22%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ IL HK+ Q + P+N KI SWNVNG++A
Sbjct: 233 DDSEPWTILVHKKPQASWIPYNPRTMRPPPLSKDTRALKIMSWNVNGLKA---------- 282
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPECP-EGY-HAFWFPG-TRQGY 808
L + GFS ++ D +V C+QE + +E + + +GY ++FW ++ GY
Sbjct: 283 --LLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNSFWTCSVSKLGY 340
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868
+G A++S+ KP+ + +G G ++H ++
Sbjct: 341 SGTAIISRVKPLSIKYGL---------------GISDHDTE------------------- 366
Query: 869 GIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAG 927
GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L G
Sbjct: 367 ----GRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTG 422
Query: 928 DLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYY 986
DLN AH ID+ P N +GFT +ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 423 DLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFVDTFRKQHPNVVAYSYWGYR 482
Query: 987 DRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 483 HNARKTNKGWRLDYFLVSESITEKVHDSYILPDISASDHSPLGLVLKL 530
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------SELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGVE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 145/298 (48%), Gaps = 56/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP----LEKLP 790
++ SWNVNGIRA + +KD F + +V C+QE + LE L
Sbjct: 1 MRLVSWNVNGIRA------------VTKKDFFESFERMAPDVLCLQETKAQDDQVLEALT 48
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
E Y F ++GY+G A++++ +P+ VT M
Sbjct: 49 ELDPAYKVFSNSAEKKGYSGTAIITRVEPISVTADMGM---------------------- 86
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
P H +GRV+ E+E FYLV VY P + +L L + W+
Sbjct: 87 ---PEHDT-------------EGRVLCAEFETFYLVTVYTPNSGSELKRLDYRQSWDKDF 130
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDV 969
+LK+L + KPVV+ GDLNVAH ID+A P N KS G+ E + F +DLGF+D
Sbjct: 131 ADYLKTLEQTKPVVVCGDLNVAHQDIDLARPKQNYNKSAGYMQAEIDGFDRLVDLGFVDT 190
Query: 970 HRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+RH PN Y++W Y K GWR+DYFL++ +L S L+ EI+ DV GSDH P
Sbjct: 191 YRHFNPNTAKYSWWSYRAGAREKNIGWRIDYFLVTPELTSSLTGAEIYNDVYGSDHCP 248
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 174 bits (440), Expect = 3e-40, Method: Composition-based stats.
Identities = 116/333 (34%), Positives = 157/333 (47%), Gaps = 62/333 (18%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
EVP + + DP + K KI SWNV+G+RAW + K G +
Sbjct: 40 EVPAL-YEDP---PDQKTSSSGKSATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G EH + GRV+ E+++F
Sbjct: 144 YGI---------------GEEEHDQE-----------------------GRVIVAEFDKF 165
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
LV Y P A L L + W+ R LK L KP+VL GDLNVAH ID+ P
Sbjct: 166 VLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 225
Query: 944 NLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYF 1000
N +GFT QER F L + D RHLYP+ YT+W Y + SK GWRLDYF
Sbjct: 226 NKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPDTPYAYTFWTYMMNARSKNVGWRLDYF 285
Query: 1001 LISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L+S+ L L D +I GSDH P LYL L
Sbjct: 286 LLSQSLLPALCDSKIRSKALGSDHCPITLYLAL 318
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 174 bits (440), Expect = 3e-40, Method: Composition-based stats.
Identities = 111/310 (35%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QE F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQEAQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 174 bits (440), Expect = 3e-40, Method: Composition-based stats.
Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F Q D + FC+QE + ++ EG
Sbjct: 2 KFISWNVNGLRA--AVKKGFLDVF----------NQLDADFFCLQETKLQEGQIDLPLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K + V +G ++
Sbjct: 50 YTQYWNYAEKKGYSGTAIFAKQPALSVQYGLGIE-------------------------- 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
EL +GR++T+EY +FYLV Y P A+ +L + +L W + R +L
Sbjct: 84 --ELD----------HEGRLITLEYPEFYLVTCYTPNAQSELKRIDFRLQWEAAFREYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E KPV++ GDLNVAH +ID+ N GK+GF+ +ERN F+ L+ GF D R+LYP
Sbjct: 132 QLDEKKPVIICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNAFTELLNTGFTDTFRYLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+Y++W Y + GWR+DYFL+S +L+ + + I+ D+ GSDH P L L+
Sbjct: 192 ETTGVYSWWSYRFHARENNAGWRIDYFLVSNRLQKDIQEACIYTDILGSDHCPVGLTLD 250
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 153/302 (50%), Gaps = 49/302 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNV G+RA L +K+G S + + + ++ +QE +C ++ E
Sbjct: 59 IKIISWNVAGLRA------------LIKKNGHSVLVEENPDIIALQETKC-VDVPSELQN 105
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH F + G+ GV +L+K +P++VT+ F K
Sbjct: 106 GYHTFLNASEKSGHGGVLLLTKEEPIKVTYSFDDK------------------------- 140
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D G GR++ EYE +YL+N Y P + L L + +W+ + +
Sbjct: 141 --------SKCDIDGNGKGRIIIAEYESYYLINAYVPNSGRGLVNLDKRKIWDDYYLTFI 192
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVHRHL 973
K L+ KPVV GDLNVAH ID+A P TN K +GFT QERN F+ LD GF+DV R L
Sbjct: 193 KKLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQERNDFTRLLDAGFVDVFRRL 252
Query: 974 YPNHR-IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ YT+W ++ K GWRLDYF++S+++ + + +I ++GSDH P L +
Sbjct: 253 NPDKEGAYTFWSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDILHSIKGSDHCPLSLTI 312
Query: 1032 NL 1033
L
Sbjct: 313 EL 314
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA +F F + G D + C+QE + +L
Sbjct: 2 KFISWNVNGLRA------VFGKGFPEIIQGL------DADFVCLQETKMQAGQLEADLPS 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ ++ +P+ V++G G + H +
Sbjct: 50 YHTYWNYAEKKGYSGTAIYTRHEPLSVSYGI---------------GIDHHDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY FYLV VY P +++DL L ++ W R +L
Sbjct: 88 ----------------EGRVITLEYTDFYLVTVYVPNSQDDLRRLGYRMTWEDDFRAYLV 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GDLNVAH ID+ P +N +GFT +ER F LD GF+D R+ +P
Sbjct: 132 ELDKKKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERGKFQELLDAGFIDTFRYFHP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ R IY++W Y + + GWR+DYF+ S++L L+ +IH ++ GSDH P L L
Sbjct: 192 DQRDIYSWWSYRFKARERNSGWRIDYFVTSQRLAPQLASAKIHTEIFGSDHCPVELVL 249
>gi|385826522|ref|YP_005862864.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 149/294 (50%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 8 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFGIQDTRVEPNEVKIDLP- 54
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF +
Sbjct: 55 GYYQYWNYAERKGYAGTAVFTKEKPITVANGFGV-------------------------- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE+ +GR +T+E+ FY +NV P + E L L + LW R ++
Sbjct: 89 --PEVDG----------EGRSITLEFSNFYFINVQVPFSGEKLQRLDFRELWAQIFRNYV 136
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH ID+A P N + GFT ER FS L+ GF+D R+ +
Sbjct: 137 TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSELLNAGFIDTFRYFH 196
Query: 975 PNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YTYW Y D+ ++ + GWRLDYFL+S L+ L++ +I ++ GSDH P
Sbjct: 197 PDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAKILNNIMGSDHCP 250
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F K+ F+ + D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRACCE--KGF-------KESFAAL---DADFFCLQETKMQEGQLDLEFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ S+ P+ VT+G G EH +
Sbjct: 50 YRSYWNYAEKKGYSGTAIFSRHAPLNVTYGL---------------GLEEHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E F+LV VY P +++ L L ++ W R +L
Sbjct: 89 -----------------GRVITLEMPDFFLVTVYTPNSQDGLKRLDYRMQWEEAFRAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P +N +GFT +ER F LD GF D R YP
Sbjct: 132 QLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGILLDSGFTDTFRFFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYFL+SK+L++ L IH ++ GSDH P
Sbjct: 192 DREGIYSWWSYRFKAREKNAGWRIDYFLVSKRLEAQLKSATIHTEIFGSDHCP 244
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 174 bits (440), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +K F + + +VFC+QEI+ ++ G
Sbjct: 2 KLISWNVNGLRA------------VMKKGFMDFFTEVNADVFCLQEIKLQEGQIEMDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KPV V +G ++
Sbjct: 50 YYTYWNYAHKKGYSGTAIFTKQKPVAVQYGLGLE-------------------------- 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
EL T +GR++T+E++ +Y++ VY P ++ L L +LLW + +K
Sbjct: 84 --ELDT----------EGRIITLEFDSYYVITVYTPNSQHGLLRLDYRLLWEEAILSFVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV+L GDLNVAH ID+ P N SGFT +ER+ + FL+ GF+D R+ YP
Sbjct: 132 TLDNHKPVLLCGDLNVAHEEIDLKNPKANKKNSGFTPEERSKMTQFLESGFVDTFRYFYP 191
Query: 976 NHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y K GWR+DYFL S++L L + +IH D+ GSDH P
Sbjct: 192 EEEGHYSWWSYRSNCREKNVGWRIDYFLASQRLVPELQNAKIHKDIWGSDHCP 244
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGVE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F K+ F+ + D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRACCE--KGF-------KESFAAL---DADFFCLQETKMQEGQLDLEFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ S+ P+ VT+G G EH +
Sbjct: 50 YRSYWNYAEKKGYSGTAIFSRHAPLNVTYGL---------------GLEEHDRE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E F+LV VY P +++ L L ++ W R +L
Sbjct: 89 -----------------GRVITLEMPDFFLVTVYTPNSQDGLKRLDYRMQWEEAFRAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P +N +GFT +ER F LD GF D R YP
Sbjct: 132 QLDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGILLDSGFTDTFRFFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + K GWR+DYFL+SK+L++ L IH ++ GSDH P
Sbjct: 192 DREGIYSWWSYRFKAREKNAGWRIDYFLVSKRLEAQLKSATIHTEIFGSDHCP 244
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 52/290 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNGIRA K F ++ D +VFC+QE + ++ GY
Sbjct: 5 SWNVNGIRA------------CAGKGFLDFFKEVDADVFCLQETKLQEGQIELDLPGYFQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P++V +G +++ EH +
Sbjct: 53 YWNYAERKGYSGTAIFTKKEPLKVMYGINIE---------------EHDKE--------- 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+T+E+E FY V VY P ++ +L L + W +L L+
Sbjct: 89 --------------GRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLTKLD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KPV++ GD+NVAH ID+ P N+ +GFT +ER FS LD GF+D +R+ P+
Sbjct: 135 NHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDSGFIDTYRYFNPDKE 194
Query: 979 -IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYF SK+L+ L +IH +V GSDH P
Sbjct: 195 GVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVLGSDHCP 244
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 151/296 (51%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V++G G EH
Sbjct: 52 QYFYSAEKKGYSGTAIFTRLKPLSVSYGI---------------GIEEHD---------- 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E+E YLV VY P +K L L +++W R L L
Sbjct: 87 -------------NEGRVITMEFEDVYLVTVYTPNSKNGLLRLDYRMVWEDAFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN- 976
KPVV+ GDLNVAH ID+ P +N +GFT +ER F+ L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLAAGFVDTFRALYPDL 193
Query: 977 HRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ ++ EIH D+ GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHADIFGSDHCPVSLTL 249
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 173 bits (439), Expect = 4e-40, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|357125452|ref|XP_003564408.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 1
[Brachypodium distachyon]
Length = 516
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 189/401 (47%), Gaps = 82/401 (20%)
Query: 664 PPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPI---IDFNDPFR 720
P KR K +K++ E V T KI N+ + I +D +P+
Sbjct: 167 PSKRSKTKQKSIKGTTPKENSVTTVKI-NKASVQKEALVVQGAAAKAGIGLAVDQAEPWT 225
Query: 721 ILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFLQQKD 764
+L HK+ Q ++ P+N KI SWNVNG++A L +
Sbjct: 226 VLVHKKPQPEWIPYNPKIMRPPPLSKDTRALKILSWNVNGLKA------------LVKSR 273
Query: 765 GFS---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQGYAGVAVLS 815
GFS ++ D +V C+QE + +E + E EGY ++FW ++ GY+G A++S
Sbjct: 274 GFSVHELAQREDFDVLCLQETKMQDKDVEVIKESLLEGYTNSFWTCSVSKLGYSGTAIIS 333
Query: 816 KTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRV 875
+ KP+ + +G + P H +GRV
Sbjct: 334 RVKPLSIKYGLGV-------------------------PDHD-------------TEGRV 355
Query: 876 MTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHN 934
+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L GDLN AH
Sbjct: 356 VTVEFDDFYLLTAYVPNSGDGLRRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQ 415
Query: 935 HIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM- 992
ID+ P N +GFT +ER F +NFL GF+D R +P+ Y+YW Y K
Sbjct: 416 EIDIHDPAGNRRSAGFTKEERESFETNFLSKGFVDTFRKQHPDVVGYSYWGYRHNARKTN 475
Query: 993 KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 476 KGWRLDYFLVSESIAERVHDSYILPDISASDHSPLGLVLKL 516
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWN+NG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNINGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA V K F F ++ D ++FC+QE + ++ G
Sbjct: 2 KFISWNVNGIRA--CVGKGF----------LDFFKEVDADIFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K +P++V +G +++ EH +
Sbjct: 50 YFQYWNYAERKGYSGTAIFTKKEPLKVMYGINIE---------------EHDKE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY V VY P ++ +L L + W +L
Sbjct: 89 -----------------GRVITLEFEDFYFVTVYTPNSQSELKRLEYRTRWEDDFIDYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GD+NVAH ID+ P N+ +GFT +ER FS LD GF+D +R+ P
Sbjct: 132 KLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDSGFIDTYRYFNP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYF SK+L+ L +IH ++ GSDH P
Sbjct: 192 DKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEILGSDHCP 244
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 65/313 (20%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-----LEK 788
N KI WNVNG+RA L+++D +++Q + ++ C+ E + EK
Sbjct: 116 NIKIACWNVNGLRA-----------VLKREDLQKYIKQENPDILCLNETKIDESNFIKEK 164
Query: 789 L-PECPEGYHAFW---FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSN 844
+ + P GY+ +W P + GY+GV++ SK K + + G +
Sbjct: 165 VYKDIPSGYYQYWNFCIPPIK-GYSGVSIFSKEKVISIKKGIDIA--------------- 208
Query: 845 EHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL 904
EH ++GRV+T E+++FYLV VY P A +L L ++
Sbjct: 209 EHE-----------------------NEGRVLTAEFDKFYLVVVYVPNAGSELVRLDYRV 245
Query: 905 LWNSF---LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNF 961
NSF + +L L K V+L GDLNVAH ID+A P +N GFTI+ERN FS F
Sbjct: 246 --NSFDKDFQNYLNQLKLKKNVILCGDLNVAHQEIDIANPKSNRNSPGFTIEERNSFSKF 303
Query: 962 LDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVE 1020
L+ G++D R LYP Y++W + + GWR+DYF+++K+ KS + D I+ ++
Sbjct: 304 LESGWIDTFRFLYPETIKYSWWSVRTKARESNIGWRIDYFVVNKEFKSSIKDSMINNNIY 363
Query: 1021 GSDHAPQILYLNL 1033
GSDH P LNL
Sbjct: 364 GSDHCPVEFILNL 376
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 148/294 (50%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 9 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFGIQDTRVEPNEVKIDLP- 55
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF GV G
Sbjct: 56 GYYQYWNYAERKGYAGTAVFTKEKPITVANGF-----GVPEVDG---------------- 94
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR +T+E+ FY +NV P + E L L + LW R ++
Sbjct: 95 -----------------EGRSITLEFSNFYFINVQVPFSGEKLQRLDFRELWAQTFRNYV 137
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH ID+A P N + GFT ER FS L+ GF+D R+ +
Sbjct: 138 TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSELLNAGFIDTFRYFH 197
Query: 975 PNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YTYW Y D+ ++ + GWRLDYFL+S L+ L++ +I ++ GSDH P
Sbjct: 198 PDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDRLTNAKILSNIMGSDHCP 251
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 152/294 (51%), Gaps = 56/294 (19%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE---- 794
SWNVNG+R+ + T FL+ ++ + ++ +QE++ E+ P +
Sbjct: 17 SWNVNGVRS------VLTKGFLE------YLATENPDIIGLQEVKATEEQFPAGFDLQSM 64
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH +W R+GY+G AV SK +P+ V +G MK EH +
Sbjct: 65 GYHIYWNAAERKGYSGTAVFSKVEPISVRYGLGMK---------------EHDQE----- 104
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++T+E+E+++ V VY P AK +L L + LW+S +L
Sbjct: 105 ------------------GRIITLEFEKYFFVTVYTPNAKSELERLEYRQLWDSLFFDYL 146
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L KPV++ GDLNVAH ID+ P N +GFT +ER F ++L GF+D RH Y
Sbjct: 147 KRLEVEKPVIVCGDLNVAHQEIDLTNPKPNRWNAGFTDEERAGFGHYLANGFIDTFRHFY 206
Query: 975 PNHRI-YTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YT+W ++ + GWR+DYFLIS++L ++L I ++ GSDH P
Sbjct: 207 PDKTGEYTWWSNFFKSRDRNIGWRIDYFLISERLVTNLKSAFIRQEIRGSDHCP 260
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 255
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 55/304 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
K+ SWNVNG+RA +KD F + + +V C+QE + +++ E C
Sbjct: 1 MKLVSWNVNGVRA------------AIKKDFFQSLASLECDVLCLQETKAQDDQVIEALC 48
Query: 793 P-EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
+GYH F ++GY+G +++++ KP+ VT + G EH D E
Sbjct: 49 DLKGYHVFTNSAIKKGYSGTSIITRVKPIDVTR---------------DIGIEEH--DQE 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ E++ FYLV VY P + + L LS + W++
Sbjct: 92 ---------------------GRVLCAEFDAFYLVTVYTPNSGDSLKRLSYRTQWDADFL 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVH 970
++K L +KPVV+ GDLNVAH ID+A P N KS G+T +E + + + G++D
Sbjct: 131 SYVKQLEALKPVVVCGDLNVAHRDIDIARPKPNYNKSAGYTQKEIDGIDSLIAAGYVDTF 190
Query: 971 RHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
RHL+P+ Y++W Y + GWRLDYFL+S +LK +S +IH D+ GSDH P +
Sbjct: 191 RHLFPDTVKYSWWSYRAGARERNVGWRLDYFLVSHKLKEQISGADIHNDIHGSDHCPVSV 250
Query: 1030 YLNL 1033
L+L
Sbjct: 251 QLSL 254
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|397700923|ref|YP_006538711.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
gi|422866830|ref|ZP_16913440.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
gi|397337562|gb|AFO45234.1| exodeoxyribonuclease III [Enterococcus faecalis D32]
Length = 251
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRMITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 173 bits (438), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF +F+ + ++ CIQE + ++ +
Sbjct: 2 KMLSWNVNGIRA-------------CLKNGFMNFLERESPDIMCIQETKVQSGQVQLGLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W R+GY+G A+ +K KP V G ++EH
Sbjct: 49 GYFQYWNYAERKGYSGTAIFTKIKPNNVILGME---------------NSEHN------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
++GRV+T+E++++YLVNVY P ++ L+ L + W+ ++
Sbjct: 87 ----------------NEGRVITLEFDEYYLVNVYTPNSQRGLTRLEYRQKWDEDFLSYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPVV GDLNVAH ID+ P TN+ +GFT +ERN F N ++ GFLD R
Sbjct: 131 KTLETKKPVVFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDNIVNSGFLDTFREFN 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ ++ GWR+DYF ISK L+++L D I +V GSDH P
Sbjct: 191 NEPDNYSWWSYRFNARARNIGWRIDYFCISKSLRNNLKDAYIMPEVMGSDHCP 243
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 173 bits (438), Expect = 6e-40, Method: Composition-based stats.
Identities = 102/300 (34%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F F R D + FCIQE + + PEG
Sbjct: 2 KFVSWNVNGLRAC--LKKGFEETF----------RTLDADFFCIQETKMQPGQADFAPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y + + ++GY+G A+ ++T + V +G + H H
Sbjct: 50 YTEYIYSADKKGYSGTAIWARTPALSVRYGLEEDL----HNH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR +T+EY FYLVN+Y P ++ +L+ + ++ W LR +L+
Sbjct: 88 ----------------EGRAITLEYPDFYLVNLYVPNSQNELARIDYRMQWEDDLRRYLQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV+L GDLNVAH ID+ P N G +GF+ QER L GF D RHL+P
Sbjct: 132 ALDAQKPVILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGFTDTFRHLHP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W R + GWR+DYFL+S +L + +I D+ GSDH P L L+L
Sbjct: 192 DATGIYSWWSMRFRARERNAGWRIDYFLVSNRLAPQIRKADILMDILGSDHCPVTLELDL 251
>gi|417838206|ref|ZP_12484444.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761749|gb|EGP13018.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 254
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 149/294 (50%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 2 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFGIQDTRVEPNEVKIDLP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF +
Sbjct: 49 GYYQYWNYAERKGYAGTAVFTKEKPITVANGFGV-------------------------- 82
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE+ +GR +T+E+ FY +NV P + E L L + LW R ++
Sbjct: 83 --PEVDG----------EGRSITLEFSNFYFINVQVPFSGEKLQRLDFRELWAQTFRNYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH ID+A P N + GFT ER FS L+ GF+D R+ +
Sbjct: 131 TKLMQYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSELLNAGFIDTFRYFH 190
Query: 975 PNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ YTYW Y D+ ++ + GWRLDYFL+S L+ L++ +I ++ GSDH P
Sbjct: 191 PDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAKILSNIMGSDHCP 244
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 172 bits (437), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K S+NVNG+RA V K F F ++ D + FC+QE + +L +G
Sbjct: 2 KCISFNVNGLRA--IVGKNFEEDF----------KKLDADFFCLQETKMQAGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y++++ R+GY+G A+ +K KP+ VT+G G EH ++
Sbjct: 50 YYSYFNYAERKGYSGTAIYTKYKPLNVTYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY+ F+ + VY P + +L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDNFFFITVYTPNSGSELKRLEYRMSWEDDFKDYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN+ K V++ GDLNVAH ID+ P TN+ +GFT +ER F+ LD GF+D R+ P
Sbjct: 132 TLNKDKGVIVCGDLNVAHTEIDLKNPKTNVKNAGFTPEEREKFTKLLDAGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y ++ GWR+DYFL+SK LK +L +IH D+ GSDH P L L+
Sbjct: 192 DLTGAYSWWSYRFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHNDIFGSDHCPVELVLD 250
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 172 bits (437), Expect = 6e-40, Method: Composition-based stats.
Identities = 101/296 (34%), Positives = 151/296 (51%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ +P+ V +G +G H H
Sbjct: 52 QYFYSAEKKGYSGTAIFTRIRPLSVNYG----IGTPEHDH-------------------- 87
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
+GRV+T+E+ YLV VY P +K L+ L +++W R L L
Sbjct: 88 --------------EGRVITMEFADVYLVTVYTPNSKNALARLDYRMVWEDAFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN- 976
KPVV+ GDLNVAH ID+ P +N +GFT +ER F+ L+ GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLNAGFVDTFRALYPDV 193
Query: 977 HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRERIAAAEIHADVFGSDHCPVSLTL 249
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILGSDHCP 244
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str. F0430]
Length = 250
Score = 172 bits (437), Expect = 7e-40, Method: Composition-based stats.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 54/297 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V G + P H
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVARGIGI-------------------------PQHD 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E++ YLV VY P ++ L+ L ++ W R L L
Sbjct: 87 -------------NEGRVITMEFDDLYLVTVYTPNSQNALARLDYRMAWEDAFRAFLLEL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPDK 193
Query: 978 -RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L+
Sbjct: 194 VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHADVFGSDHCPVSLTLS 250
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 172 bits (437), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F ++ D + FCIQE + +L G
Sbjct: 2 KFISWNVNGLRA--VVKKDFAETF----------QKLDADFFCIQETKMQEGQLKLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ +K +P+ V++G
Sbjct: 50 YRQYFNYAERKGYSGTAIFAKDEPLTVSYGIQA--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GR +T+EY FYLV Y P + L L ++ W+ +L
Sbjct: 83 -PEFDH----------EGRAITLEYPNFYLVTSYVPNSGAKLKRLDFRMGWDKAFHAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH+ ID+ P +N +GFT +ER F+ LD GF+D RH YP
Sbjct: 132 QLDSHKPVILCGDLNVAHHEIDLKNPKSNHHNAGFTDEERQSFTKLLDQGFMDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + + GWR+DYF+ SK+L H+SD +I D+ GSDH P
Sbjct: 192 DKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFGSDHCP 244
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 172 bits (436), Expect = 8e-40, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 60 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 107
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 108 ELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E+E F LV Y P A L L + W+
Sbjct: 153 -----------------------GRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEA 189
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QE F L + D
Sbjct: 190 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQEAQGFGEMLQAVPLAD 249
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ L L D +I GSDH P
Sbjct: 250 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKALGSDHCP 309
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 310 ITLYLAL 316
>gi|431077776|ref|ZP_19495241.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|431112344|ref|ZP_19497720.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
gi|430566191|gb|ELB05312.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1604]
gi|430569298|gb|ELB08315.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1613]
Length = 250
Score = 172 bits (436), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDIPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L++ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLETRLADAKIHTDIMGSDHCP 244
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 147/300 (49%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG RA QK F D ++FCIQE + ++ PEG
Sbjct: 2 KFISWNVNGFRA------------CLQKGFGDFFTAADADIFCIQETKMQPDQADFSPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ ++GY+G AV +K +P+ V G + TH
Sbjct: 50 YLKYFHSAVKKGYSGTAVYTKKEPLEVKFGLN-------GTH------------------ 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GRV+T E+E +Y V Y P A+ +L + ++ + +R +L
Sbjct: 85 --------------TDEGRVITCEFEDYYFVCCYVPNAQNELKRIDYRMEFEDDMRAYLS 130
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPVV GDLNVAH ID+ P +N G +GF+ +ER F+ L GF D R LYP
Sbjct: 131 QLDKTKPVVYCGDLNVAHEEIDLKNPKSNAGNAGFSDEERGKFTELLGAGFADTFRRLYP 190
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y ++ GWR+DYF++S++L + D +I D+ GSDH P L + L
Sbjct: 191 DKAGAYSWWSYRFNARKNNAGWRIDYFVVSERLMDKVKDSKILSDITGSDHCPVELDIEL 250
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 139/271 (51%), Gaps = 40/271 (14%)
Query: 765 GFS-FMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVT 823
GF+ F+++ ++ C+QE + E+ GY +W R+GY+G AV +K KP+ VT
Sbjct: 4 GFAEFLQEAAPDIICLQETKMQREQADFVFPGYEEYWNSAERKGYSGTAVFTKVKPLAVT 63
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G EH + GRV+T+E+ F
Sbjct: 64 YGL---------------GQEEHDKE-----------------------GRVITLEFASF 85
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
YLV VY P +K+ L+ L +++W R +L+ L+ KPVV+ GDLNVA ID+ P T
Sbjct: 86 YLVTVYTPNSKDGLARLDYRMVWEDVFRAYLQELDAKKPVVVCGDLNVAAEEIDLKNPKT 145
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLI 1002
N +GFT +ER F GF D R+L+P Y++W Y + K GWR+DYF++
Sbjct: 146 NRRNAGFTDEERAKFRELKAAGFTDSFRYLHPEEVKYSWWSYRFKAREKNAGWRIDYFVV 205
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
S ++ L EIH +V GSDH P + L++
Sbjct: 206 SDRIADKLQSAEIHNEVFGSDHCPVSIELDV 236
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 171/348 (49%), Gaps = 78/348 (22%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ IL HK+ Q + P+N KI SWNVNG++A
Sbjct: 196 DDSEPWTILVHKKPQASWIPYNPRTMRPPPLSKDTRALKIMSWNVNGLKA---------- 245
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCPLEKLPECPE----GY-HAFWFPG-TRQGY 808
L + GFS ++ D +V C+QE + + + + GY ++FW ++ GY
Sbjct: 246 --LLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNSFWTCSVSKLGY 303
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868
+G A++S+ KP+ + +G G ++H ++
Sbjct: 304 SGTAIISRVKPLSIKYGL---------------GISDHDTE------------------- 329
Query: 869 GIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAG 927
GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L G
Sbjct: 330 ----GRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTG 385
Query: 928 DLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYY 986
DLN AH ID+ P + +GFT +ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 386 DLNCAHQEIDIHDPAGDRRSAGFTNEERESFGTNFLSKGFVDTFRKQHPNVVAYSYWGYR 445
Query: 987 DRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 446 HNARKTNKGWRLDYFLVSESITEKVHDSYILPDISASDHSPLGLVLKL 493
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 172 bits (436), Expect = 9e-40, Method: Composition-based stats.
Identities = 110/307 (35%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWIKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYP+ YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|424756722|ref|ZP_18184524.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
gi|402408116|gb|EJV40605.1| exodeoxyribonuclease III [Enterococcus faecalis R508]
Length = 251
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFIVTCYTPNSQAELKRLAYRMTWEDAFSAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F++ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTDLLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 172 bits (436), Expect = 9e-40, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSELSHQYWSAPSDKEGYSGVGLLSRQCPIKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNAAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|430841915|ref|ZP_19459832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|431741213|ref|ZP_19530119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
gi|430493733|gb|ELA70024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1007]
gi|430601870|gb|ELB39452.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2039]
Length = 250
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L++ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLETRLADAKIHTDIMGSDHCP 244
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 172 bits (436), Expect = 9e-40, Method: Composition-based stats.
Identities = 99/297 (33%), Positives = 149/297 (50%), Gaps = 54/297 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V G + P H
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVARGIGI-------------------------PQHD 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E++ YLV VY P ++ L+ L ++ W R L L
Sbjct: 87 -------------NEGRVITMEFDDLYLVTVYTPNSQNALARLDYRMAWEDAFRAFLLEL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPDK 193
Query: 978 -RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y + GWR+DYFL+S++L+ ++ EIH D+ GSDH P L L+
Sbjct: 194 VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHADIFGSDHCPVSLTLS 250
>gi|357125454|ref|XP_003564409.1| PREDICTED: apurinic endonuclease-redox protein-like isoform 2
[Brachypodium distachyon]
Length = 493
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 190/398 (47%), Gaps = 84/398 (21%)
Query: 664 PPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILE 723
P KR K +K++ E V T KI S + + A + +D +P+ +L
Sbjct: 152 PSKRSKTKQKSIKGTTPKENSVTTVKINKA----SVQKEALAGIGLA--VDQAEPWTVLV 205
Query: 724 HKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS 767
HK+ Q ++ P+N KI SWNVNG++A L + GFS
Sbjct: 206 HKKPQPEWIPYNPKIMRPPPLSKDTRALKILSWNVNGLKA------------LVKSRGFS 253
Query: 768 ---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQGYAGVAVLSKTK 818
++ D +V C+QE + +E + E EGY ++FW ++ GY+G A++S+ K
Sbjct: 254 VHELAQREDFDVLCLQETKMQDKDVEVIKESLLEGYTNSFWTCSVSKLGYSGTAIISRVK 313
Query: 819 PVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTV 878
P+ + +G + P H +GRV+TV
Sbjct: 314 PLSIKYGLGV-------------------------PDHDT-------------EGRVVTV 335
Query: 879 EYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHID 937
E++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L GDLN AH ID
Sbjct: 336 EFDDFYLLTAYVPNSGDGLRRLTYRVTEWDPCLGNYMKELEKSKPVILTGDLNCAHQEID 395
Query: 938 VALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGW 995
+ P N +GFT +ER F +NFL GF+D R +P+ Y+YW Y K KGW
Sbjct: 396 IHDPAGNRRSAGFTKEERESFETNFLSKGFVDTFRKQHPDVVGYSYWGYRHNARKTNKGW 455
Query: 996 RLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
RLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 456 RLDYFLVSESIAERVHDSYILPDISASDHSPLGLVLKL 493
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 154/300 (51%), Gaps = 54/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA VNK F F R+ D ++FC+QE + ++ + E
Sbjct: 2 KLISWNVNGLRA--CVNKGFLDYF----------REMDADIFCVQETKLQEGQIDLDLGE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G AV +K KP+ V +G NE
Sbjct: 50 EYEQYWNYALKKGYSGTAVFTKKKPLSVRYGIE---------------ENEE-------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GR++T+E+E F+LVNVY P +K DLS L +L W R +L
Sbjct: 87 --PE--------------GRILTLEFESFFLVNVYTPNSKRDLSRLEERLEWEERFRFYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV++ GDLNVAH ID+ +N G SGFT +ER + D GF D RH Y
Sbjct: 131 QKLDACKPVIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMTILQDAGFTDTFRHFY 190
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ YT+W Y + + GWR+DYFL+S +L+ L D I ++ GSDH P L +N
Sbjct: 191 PDQTDAYTWWSYMPKVRERNIGWRIDYFLVSSRLRDFLVDARIDSNILGSDHCPIHLIMN 250
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DIEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILGSDHCP 244
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 152/297 (51%), Gaps = 54/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K+ SWNVNG+RA VNK F + + ++ + ++FC+QE + ++ E E
Sbjct: 3 KLISWNVNGLRA--CVNKGF----------YDYFKEANADIFCLQETKLQEGQIEMEIGE 50
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G AV ++ +P+ V +G +H
Sbjct: 51 EYHQYWNYAEKKGYSGTAVFTRMEPLSVRYGLE----------------EDH-------- 86
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE GRV+T+E++ FYLV VY P AK DLS L +L W R +L
Sbjct: 87 -EPE--------------GRVITLEFQDFYLVTVYTPNAKRDLSRLDYRLEWEDRFRNYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPVV+ GDLNVAH ID+ +N SGFT +ER ++ L GF+D +R+ Y
Sbjct: 132 LQLDAKKPVVVCGDLNVAHQEIDLKNAKSNRNNSGFTPEEREKMTSLLAAGFVDTYRYFY 191
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
P+ YT+W + + + GWR+DYFL S++L L I V GSDH P +L
Sbjct: 192 PDQTDAYTWWSFMPKVRERNIGWRIDYFLASERLAPSLLGAGIDSQVLGSDHCPVVL 248
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILGSDHCP 244
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III [Sphaerochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Sphaerochaeta coccoides DSM 17374]
Length = 252
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 155/302 (51%), Gaps = 56/302 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K SWNVNGIR S + K F F D ++FC+QE + + E P+
Sbjct: 3 KFVSWNVNGIR--SCLGKGFLDYFFST----------DADIFCLQETKLQEGQHDIELPD 50
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G A+ SK KPVRVT G + +
Sbjct: 51 -YHQYWNYAQKKGYSGTALFSKEKPVRVTFGIAPFI------------------------ 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
DA +GRV+T EY ++LV VY P ++ +L L ++ W+ R ++
Sbjct: 86 ----------EDA----EGRVITAEYPAYFLVCVYTPNSQRELLRLDYRMKWDDAFRAYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
SL +KPV + GDLNVAH ID+ P +N+ +GFT +ER+ FS FLD GF D RHLY
Sbjct: 132 LSLEAMKPVFVCGDLNVAHKEIDLKNPKSNVRNAGFTQEERDKFSLFLDAGFTDSFRHLY 191
Query: 975 PNHRI--YTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P H I Y++W Y + +K GWR+DY+L S + + D I + GSDHAP L L
Sbjct: 192 P-HVIDRYSWWSYMANARAKNIGWRIDYWLTSNRYADKIHDSLIDDHIPGSDHAPVALLL 250
Query: 1032 NL 1033
+L
Sbjct: 251 DL 252
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VFKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W R +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFMVTCYTPNSQAELKRLAYRMTWEDAFRAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 172 bits (435), Expect = 1e-39, Method: Composition-based stats.
Identities = 111/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPPELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSGLPHQYWSAPSDKEGYSGVGLLSRQCPIKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV VY P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTVYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 148/296 (50%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPEGYH 797
SWNVNG+RA + K F F ++ + +VFC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELNADVFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V++G G EH
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVSYGI---------------GIEEHD---------- 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E YLV VY P AK L L ++ W R L L
Sbjct: 87 -------------NEGRVITMELPDVYLVTVYTPNAKRALERLDYRMAWEDSFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPDK 193
Query: 978 R-IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ +S EIH DV GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRISAAEIHADVFGSDHCPVSLTL 249
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 147/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA + K F + + + F +QE + + G
Sbjct: 3 KFISWNVNGIRA--CIKKGFLDV----------LEGESPDYFAVQETKMQEGQEEILTNG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G VLSK + V + G G EH
Sbjct: 51 YHQYWDSAKRKGYSGTLVLSKEEAVSTSKGI---------------GIEEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GRV+T +++ FYLVNVY P +K +L+ L + W R ++
Sbjct: 88 ---------------EEGRVVTADFKDFYLVNVYVPNSKPELARLDYRQHWEDDFRDYVV 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV++ GDLNVAH ID+ P TN GFT +ER F+ L+ GF D R+ YP
Sbjct: 133 KLNKEKPVIICGDLNVAHTEIDLKNPKTNRRNPGFTDEEREKFTELLEAGFTDTFRYKYP 192
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W Y ++ GWR+DYFL+S +K + D +I DV GSDH P +L L++
Sbjct: 193 DKEGAYTWWSYRFNARKNNAGWRIDYFLVSNDVKDKIEDAKILSDVYGSDHCPVVLELDI 252
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Loxodonta
africana]
Length = 318
Score = 172 bits (435), Expect = 1e-39, Method: Composition-based stats.
Identities = 109/307 (35%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C +KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSEKKLPAELQ 109
Query: 791 ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 DLPGLSHQYWLAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV VY P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTVYVPNAGRGLVRLDYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYP+ YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
L L L
Sbjct: 312 ITLLLAL 318
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 153/302 (50%), Gaps = 49/302 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNV G+RA L +K G S + + + ++ +QE +C +E E
Sbjct: 59 IKIISWNVAGLRA------------LIKKSGHSVLVEENPDIVALQETKC-VEVPNELQN 105
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH F + G+ GV +L+K +P++V + F K VV +G
Sbjct: 106 GYHTFLNASEKSGHGGVLLLTKEEPIKVAYTFDDKSKCVVDGNG---------------- 149
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++ EYE +YL+N Y P + L L + +W+ + +
Sbjct: 150 -----------------KGRIIIAEYESYYLINAYVPNSGRGLVNLDKRKIWDDYYLTFI 192
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVHRHL 973
K L+ KPVV GDLNVAH ID+A P TN K +GFT QERN F+ LD GF+DV R L
Sbjct: 193 KKLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQERNDFTRLLDAGFVDVFRRL 252
Query: 974 YPNHR-IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P+ YT+W ++ K GWRLDYF++S+++ + + +I ++GSDH P L +
Sbjct: 253 NPDKEGAYTFWSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDILHSIKGSDHCPLSLTI 312
Query: 1032 NL 1033
L
Sbjct: 313 EL 314
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 54/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA +FT GF +++ D + C+QE + +L
Sbjct: 2 KFISWNVNGLRA------VFTK-------GFPDIIKELDADFVCLQETKMQAGQLDADLP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y ++W ++GY+G A+ ++ +P+ V++G G EH +
Sbjct: 49 SYISYWNYAVKKGYSGTAIYTRHEPLSVSYGI---------------GIEEHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EY +F+LV VY P +++DL L ++ W R +L
Sbjct: 89 ------------------GRVITLEYPEFFLVTVYTPNSQDDLRRLDYRMTWEDAFRSYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L+ KPV++ GDLNVAH ID+ P +N +GFT +ER LD GF+D R+ Y
Sbjct: 131 KGLDAKKPVIICGDLNVAHKEIDLKNPKSNRRNAGFTDEERGKLQELLDAGFIDTFRYFY 190
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ IY++W Y + + GWR+DYF+ S++L L IH ++ GSDH P L L+
Sbjct: 191 PDQADIYSWWSYRFKARERNSGWRIDYFVASERLAPRLQGAAIHTEIYGSDHCPVELILD 250
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F I +++ D + FCIQE + + G
Sbjct: 2 KFVSWNVNGLRA--VLKKGFEDI----------VKEFDADFFCIQETKMQEGQADVDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G A+ +K +P+ VT+ F G D
Sbjct: 50 YHQYFSYAEKKGYSGTAIFTKHEPLSVTYNFE-------------------GHD------ 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR + +EY++FYL+NVY P A+ +L L ++ W LR L
Sbjct: 85 ---------------DEGRAVLLEYDKFYLLNVYVPNAQPELKRLEYRMQWEDDLRAMLS 129
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + K VV+ GDLNVAH ID+ P TN G GF+ +ER + L GF D RHLYP
Sbjct: 130 ELAKKKHVVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEERAKMTELLGAGFTDTFRHLYP 189
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y K GWR+DYF++ + LK + + IH DV GSDH P L L++
Sbjct: 190 EQEGAYSWWSYRGNARKNNTGWRIDYFVVDEGLKDKIKEAAIHPDVMGSDHCPVSLELDI 249
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F ++ D ++F +QEI+ ++
Sbjct: 5 KMISWNVNGLRA--VVKKGFMDEF----------KKLDADLFALQEIKLQEGQIEIDLPH 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ F+ ++GY+G A+ SK +P+ V +G G +EH +
Sbjct: 53 YYEFYNYAEKKGYSGTAIFSKKEPISVNYGI---------------GIDEHDKE------ 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E FY V Y P +K L L + +W R +L
Sbjct: 92 -----------------GRVITLEFENFYFVTCYTPNSKRKLERLDYRQVWEDDFRNYLN 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + K V+L GDLNVAH ID+A P TN +GFT +ER F+ L G++D R+ YP
Sbjct: 135 ELRKNKEVILCGDLNVAHKEIDLANPSTNRKSAGFTDEEREKFTELLKNGYIDTFRYFYP 194
Query: 976 NHRI-YTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ + Y++W Y+ + + GWR+DYF++S+ L+ HL D +IH +V GSDH P L + L
Sbjct: 195 DLKDEYSWWSYFAKSRERNVGWRIDYFVVSEGLEKHLVDAKIHQEVMGSDHCPVELKIKL 254
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 149/297 (50%), Gaps = 54/297 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPEGYH 797
SWNVNG+RA + K F F ++ D + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELDADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V G + P H
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVARGIGI-------------------------PQHD 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E++ YLV VY P ++ L+ L ++ W R L L
Sbjct: 87 -------------NEGRVITMEFDDLYLVTVYTPNSQNALARLDYRMAWEDAFRSFLLEL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPDK 193
Query: 978 -RIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L+
Sbjct: 194 VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHADVFGSDHCPVSLTLS 250
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 154/299 (51%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F + F +Q + +VF IQE + +L G
Sbjct: 2 KLISWNVNGLRA--VVKKDFVTTF----------QQLNADVFSIQETKMQAGQLDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++F ++GY+G AV SK +P+ V G ++ F+
Sbjct: 50 YHQYFFYAKKKGYSGTAVFSKAEPISVKQGLGIE--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E+ +YL+N Y P ++ L + ++ ++ LR ++
Sbjct: 87 ---------------DEGRTITLEFPDYYLINSYTPNSQPKLKRVDYRMRYDDVLREYML 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH ID+ P TN GF+ QER+ FS LD GF+D R L+P
Sbjct: 132 QLSADKPVILCGDLNVAHEEIDLKNPKTNHKNPGFSDQERDKFSELLDSGFIDSFRSLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y ++ GWR+DYF++SK + + D +I D+ GSDH P L LN+
Sbjct: 192 QEIKYSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADILTDIYGSDHCPIELDLNI 250
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K SWNVNG+RA + K F F D + FC+QE + ++ E P+
Sbjct: 2 KFISWNVNGLRA--VMGKNFMEAF----------GSLDADFFCLQETKLQAGQIQMELPD 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH FW ++GY+G AV +K +P+ ++G G EH ++
Sbjct: 50 -YHQFWNYAEKKGYSGTAVFTKHEPISASYGI---------------GIAEHDTE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EYE+F+LV VY P ++++L L ++ W R +L
Sbjct: 89 ------------------GRVITLEYEKFFLVTVYTPNSQDELRRLEYRMKWEDDFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L K V++ GD+NVAH ID+ P TN +GFT +ER + L GF D RH Y
Sbjct: 131 KTLALKKGVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEERGKMTELLSSGFTDSFRHFY 190
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ +Y++W Y + K GWR+DYFL+S +K ++ +IH ++ GSDH P
Sbjct: 191 PDTAGVYSWWSYRFHAREKNTGWRIDYFLVSDSIKDKMTGAKIHTEILGSDHCP 244
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|422727704|ref|ZP_16784135.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|424677217|ref|ZP_18114076.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|424679202|ref|ZP_18116030.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|424682483|ref|ZP_18119253.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|424686042|ref|ZP_18122715.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|424689047|ref|ZP_18125641.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|424692659|ref|ZP_18129142.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|424695850|ref|ZP_18132222.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|424699041|ref|ZP_18135281.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|424702698|ref|ZP_18138845.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|424705840|ref|ZP_18141862.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|424716100|ref|ZP_18145417.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|424719240|ref|ZP_18148416.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|424724426|ref|ZP_18153372.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|424726233|ref|ZP_18154907.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|424734642|ref|ZP_18163137.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|424746779|ref|ZP_18175000.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
gi|402355247|gb|EJU90024.1| exodeoxyribonuclease III [Enterococcus faecalis ERV103]
gi|402357580|gb|EJU92285.1| exodeoxyribonuclease III [Enterococcus faecalis ERV116]
gi|402367516|gb|EJV01856.1| exodeoxyribonuclease III [Enterococcus faecalis ERV129]
gi|402368116|gb|EJV02441.1| exodeoxyribonuclease III [Enterococcus faecalis ERV25]
gi|402369475|gb|EJV03753.1| exodeoxyribonuclease III [Enterococcus faecalis ERV31]
gi|402377670|gb|EJV11567.1| exodeoxyribonuclease III [Enterococcus faecalis ERV37]
gi|402377770|gb|EJV11662.1| exodeoxyribonuclease III [Enterococcus faecalis ERV62]
gi|402379084|gb|EJV12904.1| exodeoxyribonuclease III [Enterococcus faecalis ERV41]
gi|402386727|gb|EJV20225.1| exodeoxyribonuclease III [Enterococcus faecalis ERV63]
gi|402388863|gb|EJV22288.1| exodeoxyribonuclease III [Enterococcus faecalis ERV68]
gi|402389270|gb|EJV22670.1| exodeoxyribonuclease III [Enterococcus faecalis ERV65]
gi|402395163|gb|EJV28284.1| exodeoxyribonuclease III [Enterococcus faecalis ERV73]
gi|402396815|gb|EJV29860.1| exodeoxyribonuclease III [Enterococcus faecalis ERV72]
gi|402400257|gb|EJV33096.1| exodeoxyribonuclease III [Enterococcus faecalis ERV81]
gi|402406913|gb|EJV39456.1| exodeoxyribonuclease III [Enterococcus faecalis ERV85]
gi|402409191|gb|EJV41626.1| exodeoxyribonuclease III [Enterococcus faecalis ERV93]
Length = 251
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--VVKKNFMDVF----------NELDADFFCLQETKLQAGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + + V +G ++ +
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEEALSVRYGLGIE-------------------------A 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+EY +F++V Y P ++ +L L+ ++ W +L
Sbjct: 85 HDQ-------------EGRVITLEYPEFFIVTCYTPNSQAELKRLAYRMTWEDAFSAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH +ID+ TN +GFT +ER F+ LD GF D R+ YP
Sbjct: 132 ELNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEERQKFTELLDSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYF++S+ L L +IH D+ GSDH P
Sbjct: 192 EAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDILGSDHCP 244
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
Length = 250
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 151/296 (51%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPEGYH 797
SWNVNG+RA + K F F ++ + + FC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELNADAFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V++G G EH
Sbjct: 52 QYFYSAEKKGYSGTAIFTRLKPLSVSYGI---------------GIEEHD---------- 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E+E YLV VY P +K L L +++W R L L
Sbjct: 87 -------------NEGRVITMEFEDVYLVTVYTPNSKNGLLRLDYRMVWEDAFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN- 976
KPVV+ GDLNVAH ID+ P +N +GFT +ER F+ L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLAAGFVDTFRALYPDL 193
Query: 977 HRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S++L+ ++ EIH DV GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHADVFGSDHCPVSLTL 249
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 150/309 (48%), Gaps = 60/309 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
+I SWNVNGIRA + N++ F Q + + C+QE + E++
Sbjct: 235 LQIWSWNVNGIRAILKKNRIQ-----------EFFEQANPTILCVQESKIDEERMAADKV 283
Query: 791 --ECPEGYHAFW--FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ P Y +W +GYAG + SK KP+ V++ VH H
Sbjct: 284 KDKFPADYLQYWNCCKPPIKGYAGTIIFSKIKPISVSYDIG------VHKH--------- 328
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL- 905
D E GR +T+E+E+F+LV VY P + L +
Sbjct: 329 --DKE---------------------GRTITLEFEKFFLVGVYVPNSGATLKWHDYRCSE 365
Query: 906 WNSFLRGHLKSLNE-IKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL 964
W+ R +LK L KPV+L GD+NVAH ID+ P N + FT +ER FSNF +
Sbjct: 366 WDLDFRAYLKGLERRGKPVILCGDMNVAHQEIDIFDPKRNERMACFTNEERQSFSNFTKM 425
Query: 965 GFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
GF+D R LYP Y++W D+ K KGWRLDYF++S+Q+K L+D EIH + GSD
Sbjct: 426 GFVDTFRELYPGKIKYSFWDIRDKSRKENKGWRLDYFMVSRQIKHALTDAEIHNEFWGSD 485
Query: 1024 HAPQILYLN 1032
H P L L+
Sbjct: 486 HCPVSLTLD 494
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 252
Score = 171 bits (434), Expect = 1e-39, Method: Composition-based stats.
Identities = 110/301 (36%), Positives = 151/301 (50%), Gaps = 59/301 (19%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP--EGY 796
SWNVNG+RA VNK FL + D +VFCIQE + ++ E P E Y
Sbjct: 5 SWNVNGLRAC--VNK---GAFL------PYFESADADVFCIQETKLQAGQI-ELPIGEAY 52
Query: 797 HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSH 856
FW R+GY+G AV ++ P+ V +GF G+D E
Sbjct: 53 QQFWNYAERKGYSGTAVFTRITPLDVRYGFG------------------DGNDPE----- 89
Query: 857 PELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS 916
GR++T+E+ FY+V VY P AK DLS L +L W +L +
Sbjct: 90 ----------------GRIITLEFPSFYVVTVYTPNAKRDLSRLPYRLEWEDAFCAYLCA 133
Query: 917 LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN 976
L+ KPV+ GDLNVAH ID+ +N G SGFT +ER + L GF+D R L+PN
Sbjct: 134 LDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLAAGFVDTFRALHPN 193
Query: 977 -HRIYTYWPYYDRP---SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W + P + GWR+DYFL+S++L+ + D I V GSDH P +L ++
Sbjct: 194 VTDKYTWWS--NMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVLGSDHCPVVLEVD 251
Query: 1033 L 1033
L
Sbjct: 252 L 252
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 155/307 (50%), Gaps = 56/307 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--- 790
N KI SWNV G+RAW + L + ++ D +FC+QE +C K+P
Sbjct: 60 NLKITSWNVAGVRAWIKKGSLSYLLETEKPD-----------IFCLQETKCSETKIPCEL 108
Query: 791 -ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E + H FW ++GY+GVA+ SK KP+ V G S +H
Sbjct: 109 KELKDYPHQFWAFAKKEGYSGVALFSKVKPLDVQVGLQ---------------SQDHD-- 151
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
++GR++ E+E F+L+ Y P A L L +L W+
Sbjct: 152 ---------------------EEGRIIIAEFEFFFLLTTYVPNAGRKLVTLDKRLDWDLL 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
LR +K LN+ KPV+ +GDLNVAH ID+A P TN +GFT +ER F + L LGF+D
Sbjct: 191 LRKKMKELNKKKPVIASGDLNVAHTEIDLANPKTNQKNAGFTPEERAGFDDLLSLGFVDT 250
Query: 970 HRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLIS-KQLKSHLSDLEIHGDVEGSDHAP 1026
+R L P YT+W Y + +K GWRLDYFLIS + +S++ D I V GSDH P
Sbjct: 251 YRKLNPEKTGAYTFWTYMMNARAKNVGWRLDYFLISDRWFESNVCDSVIRSKVLGSDHCP 310
Query: 1027 QILYLNL 1033
L L++
Sbjct: 311 ISLLLHV 317
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 151/294 (51%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +K F + + +VFC+QEI+ ++
Sbjct: 2 LKLISWNVNGLRA------------VMKKGFMDFFTEVNADVFCLQEIKLQEGQIEMDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K KP+ + +G ++
Sbjct: 50 GYYTYWNYAHKKGYSGTAIFTKQKPLSIQYGLGLE------------------------- 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
EL T +GR++T+E++ +Y++ VY P ++ L L +LLW + +
Sbjct: 85 ---ELDT----------EGRIITLEFDNYYVITVYTPNSQHGLLRLDYRLLWEDAILSFV 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L+ KPV+L GDLNVAH ID+ P N SGFT++ER + FL+ GF+D RH +
Sbjct: 132 KALDNHKPVLLCGDLNVAHEEIDLRNPKANKKNSGFTLEERGKMTQFLEKGFVDTFRHFH 191
Query: 975 PNHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P Y++W Y K GWR+DYFL S++L L +IH D+ GSDH P
Sbjct: 192 PEEEGHYSWWSYRSNCREKNVGWRIDYFLASQRLVPALQSAKIHIDIWGSDHCP 245
>gi|431586490|ref|ZP_19521005.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
gi|430593668|gb|ELB31654.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1861]
Length = 250
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKKWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 152/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEILGSDHCP 244
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 171 bits (434), Expect = 2e-39, Method: Composition-based stats.
Identities = 109/310 (35%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++R+ ++ C+QE +C KLP
Sbjct: 61 PATLKICSWNVDGLRAWVK------------KKGLDWVREEAPDILCLQETKCAESKLPP 108
Query: 791 ---ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ + H +W P ++GY+GV +LS+ +P+ V++G G EH
Sbjct: 109 ELKDLSDFPHRYWAAPADKEGYSGVGLLSRRRPLSVSYGI---------------GEEEH 153
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E+E F LV VY P + L L + W
Sbjct: 154 DQE-----------------------GRVIVAEFEAFVLVTVYVPNSGRGLVRLDYRQRW 190
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DLG 965
+ R L++ KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 191 DQAFRRFLQAQAARKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLGTVD 250
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYP YT+W Y + SK GWRLDYFL+S+ L L D +I GSD
Sbjct: 251 LADSFRHLYPAAAYAYTFWTYMMNARSKNVGWRLDYFLLSRALLPSLCDSKIRSAALGSD 310
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 311 HCPITLYLAL 320
>gi|425057149|ref|ZP_18460578.1| exodeoxyribonuclease III [Enterococcus faecium 504]
gi|403041007|gb|EJY52049.1| exodeoxyribonuclease III [Enterococcus faecium 504]
Length = 269
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 147/294 (50%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA VNK F +F + D + FC+QE + ++
Sbjct: 20 LKFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLP 67
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 68 GYYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------ 106
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+EY F+LV Y P ++ +L L +L W +L
Sbjct: 107 -----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYL 149
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ Y
Sbjct: 150 ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFY 209
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P +Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 210 PTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 263
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLDVF----------HELDADFFCLQETKLQAGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W R+GY+G A+ +K + V++G G D+
Sbjct: 50 YHQYWNYAERKGYSGTAIFAKEPALNVSYGM--------------------GIDLHD--- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY +F+LV Y P ++ +L L +L W +L+
Sbjct: 87 ---------------QEGRLITLEYPEFFLVTCYTPNSQNELKRLDYRLQWEEAFYHYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GDLNVAH ID+ TN +GFT++ER FS+ L GF+D R+ YP
Sbjct: 132 ELKKQKPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTMEERTAFSHLLANGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y ++ GWR+DYFL S +LK L D +IH + GSDH P
Sbjct: 192 EQTGIYSWWSYRFNARKNNAGWRIDYFLTSDELKPRLIDAKIHTSIMGSDHCP 244
>gi|430834375|ref|ZP_19452382.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
gi|430485606|gb|ELA62512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0679]
Length = 250
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGLGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 147/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ +F D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVKKNFSEVF----------EALDADFFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + V +G G EH ++
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEPALSVRYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY +F+L+ Y P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH +ID+ TN +GFT +ER FS L GF D R+ YP
Sbjct: 132 ELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLLAAGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y ++ GWR+DYF++S L L D +IH D+ GSDH P L LN
Sbjct: 192 DAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIHTDIIGSDHCPVELDLN 250
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT 11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT 11850]
Length = 254
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 151/295 (51%), Gaps = 54/295 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECP 793
K SWNVNG+RA + K F D F+ + D + FC+QE + P + E P
Sbjct: 4 LKYISWNVNGLRA--CIKKGFM-------DAFNAL---DADCFCLQETKLQPHQIELELP 51
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GYH +W ++GY+G A+ +K +P+ VT+G G EH D E
Sbjct: 52 -GYHQYWNSAVKKGYSGTAIFTKEEPLSVTYGL---------------GIEEH--DQE-- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++T ++ YL+ Y P ++ L+ LS ++ W ++ +
Sbjct: 92 -------------------GRLITADFGSHYLLCCYTPNSQRGLARLSYRMTWEKAMKEY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ L KPV+L GDLNVAH ID+A P +N +GFT +ER ++ L GF D RHL
Sbjct: 133 MTKLAAEKPVILCGDLNVAHEDIDIANPASNHKNAGFTDEERGRMTDLLAAGFTDSFRHL 192
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+P+ + Y++W Y+ + + GWR+DYFL+S K H+ IH D+ GSDH P
Sbjct: 193 HPDEKDAYSWWSYFAKARERNVGWRIDYFLVSSVWKDHIKGASIHSDILGSDHCP 247
>gi|293557096|ref|ZP_06675652.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|293567361|ref|ZP_06678711.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|406581419|ref|ZP_11056574.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|406591645|ref|ZP_11065904.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|416134092|ref|ZP_11598208.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|430822986|ref|ZP_19441561.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430825958|ref|ZP_19444156.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430828054|ref|ZP_19446184.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430835361|ref|ZP_19453351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430838568|ref|ZP_19456514.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430843577|ref|ZP_19461476.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430857677|ref|ZP_19475310.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430860673|ref|ZP_19478272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430865725|ref|ZP_19481300.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430882969|ref|ZP_19484174.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430946137|ref|ZP_19485613.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|431002064|ref|ZP_19488655.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|431149614|ref|ZP_19499472.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|431230291|ref|ZP_19502494.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|431250993|ref|ZP_19503927.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|431301513|ref|ZP_19507832.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|431375556|ref|ZP_19510351.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|431742657|ref|ZP_19531542.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|431746687|ref|ZP_19535512.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|431764630|ref|ZP_19553167.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|431767687|ref|ZP_19556134.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|447912130|ref|YP_007393542.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
gi|291589963|gb|EFF21761.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|291600740|gb|EFF31036.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|364092709|gb|EHM35053.1| exodeoxyribonuclease III [Enterococcus faecium E4452]
gi|404452675|gb|EJZ99832.1| exodeoxyribonuclease III [Enterococcus sp. GMD4E]
gi|404467425|gb|EKA12542.1| exodeoxyribonuclease III [Enterococcus sp. GMD1E]
gi|430442915|gb|ELA52936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0120]
gi|430445666|gb|ELA55396.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0164]
gi|430484135|gb|ELA61170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0269]
gi|430489352|gb|ELA65966.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0680]
gi|430491810|gb|ELA68262.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0688]
gi|430497436|gb|ELA73473.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1050]
gi|430546887|gb|ELA86829.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1552]
gi|430552071|gb|ELA91821.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1573]
gi|430552790|gb|ELA92516.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1574]
gi|430556526|gb|ELA96024.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1575]
gi|430558609|gb|ELA98021.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1576]
gi|430562184|gb|ELB01435.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1578]
gi|430574277|gb|ELB13055.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1622]
gi|430575503|gb|ELB14219.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1620]
gi|430578900|gb|ELB17447.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1623]
gi|430580703|gb|ELB19170.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1626]
gi|430583020|gb|ELB21419.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1627]
gi|430607891|gb|ELB45187.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2071]
gi|430608589|gb|ELB45835.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2134]
gi|430630640|gb|ELB66995.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1321]
gi|430630770|gb|ELB67119.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4215]
gi|445187839|gb|AGE29481.1| Exodeoxyribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 250
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|431514988|ref|ZP_19516181.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
gi|430586004|gb|ELB24272.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1634]
Length = 250
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNTTYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 157/300 (52%), Gaps = 54/300 (18%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPEG 795
+ SWNVNGIRA + K F F ++ + ++F +QE + ++++ + PE
Sbjct: 3 LASWNVNGIRA--CLTKGFEDSF----------KKINADIFALQETKAQVDQIVLDFPE- 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YHAF+ ++GY+GVA+L+K KP V +G +K EH +
Sbjct: 50 YHAFYNSAVKKGYSGVAILTKIKPNHVYYGIDIK---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E++ FY V Y P +K +L+ L ++ W +L
Sbjct: 89 -----------------GRVLTLEFDHFYFVGCYTPNSKRELARLDYRMKWEDDFLAYLD 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV+L GDLNVAH ID+ P +N +GF+ +ER + L G++D R+ YP
Sbjct: 132 KLNKTKPVILCGDLNVAHQEIDLKNPSSNHKNAGFSDEEREKMTQLLSHGYIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + + GWR+DYF+ S++LK L D I+ D+ GSDH P L ++L
Sbjct: 192 DQTDAYSWWSYMFKARERNAGWRIDYFITSERLKDKLKDAYIYSDILGSDHCPVGLEISL 251
>gi|261208808|ref|ZP_05923245.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium TC 6]
gi|289566402|ref|ZP_06446829.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|294614472|ref|ZP_06694388.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430849109|ref|ZP_19466891.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
gi|260077310|gb|EEW65030.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium TC 6]
gi|289161777|gb|EFD09650.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|291592780|gb|EFF24373.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|430538322|gb|ELA78615.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1185]
Length = 250
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 171 bits (433), Expect = 2e-39, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 62/310 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNG+RA + +K + D +VF +QE + ++ G
Sbjct: 2 RLVSWNVNGLRA------------VMKKGFMDAFHELDADVFALQETKLQEGQIEMDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH FW R+GY+G AV K +P+RV H +
Sbjct: 50 YHQFWSYAERKGYSGTAVFCKEEPLRVIHEVGV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PEL T +GRV+ E+EQ++LVNVY P A+ +L+ L ++ W+ R K
Sbjct: 83 -PELDT----------EGRVVICEFEQYWLVNVYTPNAQSELARLDHRMAWDDRFRDICK 131
Query: 916 SLNE----------IKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
L E KPVV+ GD NVAH ID+ P +N G GF+ +ER F+ LD G
Sbjct: 132 GLEEGVLPDGQAGNAKPVVMCGDFNVAHQEIDLKNPRSNRGNPGFSDEERAKFTCLLDAG 191
Query: 966 FLDVHRHLYP-NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
F+D R+L P Y++W Y + + GWR+DYFL+S+ L+ + I+ ++ GSD
Sbjct: 192 FIDTFRYLNPATEGAYSWWSYRFHARANNAGWRIDYFLVSEALREKVQMANIYSEIMGSD 251
Query: 1024 HAPQILYLNL 1033
H P + L+L
Sbjct: 252 HCPVSVELDL 261
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 171 bits (433), Expect = 2e-39, Method: Composition-based stats.
Identities = 103/301 (34%), Positives = 149/301 (49%), Gaps = 52/301 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N K SWNVNG+RA + N FL+ + F D + FC+QE + ++
Sbjct: 11 NMKFISWNVNGLRAIVKKN------FLEAFETF------DADFFCLQETKLQAGQIELDL 58
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY +W ++GY+G A+ +K +P H + G EH +
Sbjct: 59 PGYTQYWNYAEKKGYSGTAIFAK-EPALAAH--------------YGIGIEEHDA----- 98
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GRV+T+EY +F+LV Y P A+ +L L ++ W R +
Sbjct: 99 ------------------EGRVITLEYPEFFLVTCYTPNAQNELRRLDYRMTWEDAFRAY 140
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L + KPV+L GDLNVAH +ID+ TN +GFT +ER FS L GF D R+
Sbjct: 141 LTDLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREKFSTLLSAGFTDTFRYF 200
Query: 974 YPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ IY++W Y ++ GWR+DYF++S L L D +IH ++ GSDH P L L
Sbjct: 201 YPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEILGSDHCPVELQL 260
Query: 1032 N 1032
N
Sbjct: 261 N 261
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 171 bits (433), Expect = 2e-39, Method: Composition-based stats.
Identities = 110/307 (35%), Positives = 145/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|226529129|ref|NP_001146906.1| LOC100280514 [Zea mays]
gi|195604980|gb|ACG24320.1| apurinic endonuclease-redox protein [Zea mays]
Length = 510
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 171/348 (49%), Gaps = 78/348 (22%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ IL HK+ + + P+N KI SWNVNG++A
Sbjct: 213 DDSEPWTILVHKKPEASWIPYNPRTMRPPPLSKDTRALKIMSWNVNGLKA---------- 262
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQGY 808
L + GFS ++ D +V C+QE + +E + + +GY ++FW ++ GY
Sbjct: 263 --LLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNSFWTCSVSKLGY 320
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868
+G A++S+ KP+ + +G + P H
Sbjct: 321 SGTAIISRVKPLSIKYGLGI-------------------------PDHDT---------- 345
Query: 869 GIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAG 927
+GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L G
Sbjct: 346 ---EGRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTG 402
Query: 928 DLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYY 986
DLN AH ID+ P N +GFT +ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 403 DLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFVDTFRKQHPNVVAYSYWGYR 462
Query: 987 DRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 463 HNARKTNKGWRLDYFLVSESIAEKVHDSYILPDISASDHSPLGLVLKL 510
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 148/298 (49%), Gaps = 51/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA QKD R D + FC+QE + +L EG
Sbjct: 2 KFISWNVNGLRA------------CVQKDFEESFRTLDADFFCLQETKMQAGQLDLQFEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ ++ P+ VT+G G +EH +
Sbjct: 50 YTSYWNYAEKKGYSGTAIYTRHTPLSVTYGI---------------GIDEHDHE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E E FYLV Y P +++ L L ++ W ++K
Sbjct: 89 -----------------GRVITLEMEDFYLVTCYTPNSQDGLRRLDYRMKWEDDFLQYIK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH ID+ P TN +GFT +E + FL GF+D R L+P
Sbjct: 132 GLDAKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEECAKMTAFLGEGFIDTFRTLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y + K GWR+DYF+ S++L+ ++ IH +V GSDH P L L+
Sbjct: 192 DDPTYSWWSYRFKAREKNAGWRIDYFITSERLRERITSAAIHNEVFGSDHCPVELILD 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/295 (34%), Positives = 152/295 (51%), Gaps = 53/295 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
K+ +WNVNGIR S +NK LQ+ ++ + + ++ C+QE + +++ E
Sbjct: 2 KLATWNVNGIR--SVLNKGA----LQE-----YVLESNPDILCLQETKAQQDQVELGMEF 50
Query: 795 -GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
Y F+ ++GY+G A+ +K KP+ V +G G EH +
Sbjct: 51 SEYEVFFNSAVKKGYSGTAIFTKEKPLSVEYGI---------------GIEEHDQE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EYE+FYLV VY P AK DLS L + +W
Sbjct: 92 -------------------GRVITAEYEKFYLVTVYTPNAKRDLSRLEYRQVWEDDFLAF 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+K L E KPV+ GDLNVAH ID+A P TN +GFT +ER F ++ +D R+L
Sbjct: 133 IKKLEETKPVIFCGDLNVAHKEIDLANPKTNTMNAGFTKEERAKFDQVVNNDLVDAFRYL 192
Query: 974 YPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP+ Y++W Y ++ GWR+DYF+IS+ L + L +++I DV GSDH P
Sbjct: 193 YPDTLGAYSWWSYMGGARARNVGWRIDYFVISQPLTAFLQEVKIRSDVTGSDHCP 247
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 171 bits (432), Expect = 2e-39, Method: Composition-based stats.
Identities = 101/303 (33%), Positives = 152/303 (50%), Gaps = 35/303 (11%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + + FT I + + D ++ +QE + ++
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDI----------VAELDADILGLQETKLQEGQVELDLP 58
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH W R+GY+G AV + +P+ V H ++ G +G
Sbjct: 59 GYHQVWSYAERKGYSGTAVFCREEPLSVRHADAVLAAG-----------------RAAGL 101
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
S EL + A +GRV +E+E+F+ V+VY P A+ +L+ LS ++ W+ R L
Sbjct: 102 SDDELELVAVAAT----EGRVCALEFERFWFVDVYTPNAQGELARLSTRMAWDDAYRAFL 157
Query: 915 KSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+SL + KPVV GD NVAHN ID+ P +N G +GF+ +ER F LD G+ D R
Sbjct: 158 RSLEDETGKPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERAKFGELLDAGYTDTFRA 217
Query: 973 LYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
PN Y++W Y ++ GWR+DYFL+S + + I D+ GSDH P L
Sbjct: 218 ANPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGIRNDIFGSDHCPVTLE 277
Query: 1031 LNL 1033
+ L
Sbjct: 278 IEL 280
>gi|293571415|ref|ZP_06682444.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430819435|ref|ZP_19438090.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|431736951|ref|ZP_19525908.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
gi|291608506|gb|EFF37799.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|430440618|gb|ELA50858.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0045]
gi|430599606|gb|ELB37304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1972]
Length = 250
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|257883889|ref|ZP_05663542.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430852149|ref|ZP_19469884.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
gi|257819727|gb|EEV46875.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|430542731|gb|ELA82839.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1258]
Length = 250
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIICGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFVDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLASKDLEPRLADAKIHTDIMGSDHCP 244
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 147/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ +F D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVKKNFSEVF----------EALDADFFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + V +G G EH ++
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEPALSVRYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY +F+L+ Y P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH +ID+ TN +GFT +ER FS L GF D R+ YP
Sbjct: 132 ELKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLLAAGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y ++ GWR+DYF++S L L D +IH D+ GSDH P L LN
Sbjct: 192 DAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNESLLDAKIHTDIIGSDHCPVELDLN 250
>gi|195604738|gb|ACG24199.1| apurinic endonuclease-redox protein [Zea mays]
Length = 505
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 171/348 (49%), Gaps = 78/348 (22%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ IL HK+ + + P+N KI SWNVNG++A
Sbjct: 208 DDSEPWTILVHKKPEASWIPYNPRTMRPPPLSKDTRALKIMSWNVNGLKA---------- 257
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPE-CPEGY-HAFWFPG-TRQGY 808
L + GFS ++ D +V C+QE + +E + + +GY ++FW ++ GY
Sbjct: 258 --LLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNSFWTCSVSKLGY 315
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868
+G A++S+ KP+ + +G + P H
Sbjct: 316 SGTAIISRVKPLSIKYGLGI-------------------------PDHDT---------- 340
Query: 869 GIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAG 927
+GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L G
Sbjct: 341 ---EGRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTG 397
Query: 928 DLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYY 986
DLN AH ID+ P N +GFT +ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 398 DLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFVDTFRKQHPNVVAYSYWGYR 457
Query: 987 DRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 458 HNARKTNKGWRLDYFLVSESIAEKVHDSYILPDISASDHSPLGLVLKL 505
>gi|69245045|ref|ZP_00603203.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium DO]
gi|314939354|ref|ZP_07846596.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|314944126|ref|ZP_07850782.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|314949042|ref|ZP_07852404.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|314953542|ref|ZP_07856453.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|314994499|ref|ZP_07859775.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|314998115|ref|ZP_07863002.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|389867864|ref|YP_006375287.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|424789721|ref|ZP_18216358.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|424802562|ref|ZP_18228061.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|424844097|ref|ZP_18268717.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|424856557|ref|ZP_18280766.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|424898737|ref|ZP_18322301.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|424950070|ref|ZP_18365248.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|424953364|ref|ZP_18368333.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|424956623|ref|ZP_18371393.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|424959074|ref|ZP_18373681.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|424963467|ref|ZP_18377681.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|424967725|ref|ZP_18381407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|424970445|ref|ZP_18383957.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|424974530|ref|ZP_18387759.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|424978847|ref|ZP_18391732.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|424980945|ref|ZP_18393702.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|424982894|ref|ZP_18395511.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|424987691|ref|ZP_18400056.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|424991509|ref|ZP_18403654.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|424994871|ref|ZP_18406788.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|424999026|ref|ZP_18410676.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|424999959|ref|ZP_18411546.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|425003158|ref|ZP_18414540.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|425007472|ref|ZP_18418599.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|425012108|ref|ZP_18422948.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|425013534|ref|ZP_18424261.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|425017356|ref|ZP_18427864.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|425021463|ref|ZP_18431716.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|425029095|ref|ZP_18435294.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|425033598|ref|ZP_18438554.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|425034552|ref|ZP_18439436.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|425038640|ref|ZP_18443244.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|425042587|ref|ZP_18446908.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|425044172|ref|ZP_18448350.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|425049630|ref|ZP_18453458.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|425051314|ref|ZP_18454984.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|425059576|ref|ZP_18462909.1| exodeoxyribonuclease III [Enterococcus faecium 503]
gi|68196046|gb|EAN10478.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium DO]
gi|313587883|gb|EFR66728.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|313591110|gb|EFR69955.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|313594421|gb|EFR73266.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|313597294|gb|EFR76139.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|313641358|gb|EFS05938.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|313644519|gb|EFS09099.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|388533113|gb|AFK58305.1| exodeoxyribonuclease III [Enterococcus faecium DO]
gi|402919549|gb|EJX40134.1| exodeoxyribonuclease III [Enterococcus faecium S447]
gi|402920364|gb|EJX40884.1| exodeoxyribonuclease III [Enterococcus faecium R501]
gi|402921768|gb|EJX42193.1| exodeoxyribonuclease III [Enterococcus faecium V689]
gi|402929762|gb|EJX49492.1| exodeoxyribonuclease III [Enterococcus faecium R499]
gi|402932351|gb|EJX51867.1| exodeoxyribonuclease III [Enterococcus faecium R497]
gi|402933877|gb|EJX53281.1| exodeoxyribonuclease III [Enterococcus faecium R496]
gi|402939250|gb|EJX58182.1| exodeoxyribonuclease III [Enterococcus faecium R494]
gi|402945602|gb|EJX63940.1| exodeoxyribonuclease III [Enterococcus faecium R446]
gi|402949215|gb|EJX67295.1| exodeoxyribonuclease III [Enterococcus faecium P1190]
gi|402951471|gb|EJX69397.1| exodeoxyribonuclease III [Enterococcus faecium P1986]
gi|402953715|gb|EJX71407.1| exodeoxyribonuclease III [Enterococcus faecium P1140]
gi|402956143|gb|EJX73618.1| exodeoxyribonuclease III [Enterococcus faecium P1137]
gi|402960194|gb|EJX77359.1| exodeoxyribonuclease III [Enterococcus faecium P1123]
gi|402961733|gb|EJX78737.1| exodeoxyribonuclease III [Enterococcus faecium P1139]
gi|402964834|gb|EJX81589.1| exodeoxyribonuclease III [Enterococcus faecium ERV99]
gi|402972757|gb|EJX88933.1| exodeoxyribonuclease III [Enterococcus faecium ERV69]
gi|402973819|gb|EJX89911.1| exodeoxyribonuclease III [Enterococcus faecium ERV38]
gi|402976580|gb|EJX92460.1| exodeoxyribonuclease III [Enterococcus faecium ERV26]
gi|402978889|gb|EJX94596.1| exodeoxyribonuclease III [Enterococcus faecium ERV168]
gi|402980958|gb|EJX96520.1| exodeoxyribonuclease III [Enterococcus faecium ERV165]
gi|402990162|gb|EJY05046.1| exodeoxyribonuclease III [Enterococcus faecium ERV161]
gi|402992555|gb|EJY07247.1| exodeoxyribonuclease III [Enterococcus faecium ERV102]
gi|402994365|gb|EJY08901.1| exodeoxyribonuclease III [Enterococcus faecium E422]
gi|402994911|gb|EJY09408.1| exodeoxyribonuclease III [Enterococcus faecium ERV1]
gi|403000822|gb|EJY14913.1| exodeoxyribonuclease III [Enterococcus faecium E417]
gi|403004470|gb|EJY18273.1| exodeoxyribonuclease III [Enterococcus faecium C621]
gi|403004532|gb|EJY18326.1| exodeoxyribonuclease III [Enterococcus faecium C1904]
gi|403006678|gb|EJY20306.1| exodeoxyribonuclease III [Enterococcus faecium C497]
gi|403009330|gb|EJY22785.1| exodeoxyribonuclease III [Enterococcus faecium 515]
gi|403019114|gb|EJY31740.1| exodeoxyribonuclease III [Enterococcus faecium 513]
gi|403020199|gb|EJY32755.1| exodeoxyribonuclease III [Enterococcus faecium 514]
gi|403022989|gb|EJY35297.1| exodeoxyribonuclease III [Enterococcus faecium 511]
gi|403026721|gb|EJY38668.1| exodeoxyribonuclease III [Enterococcus faecium 509]
gi|403030625|gb|EJY42301.1| exodeoxyribonuclease III [Enterococcus faecium 510]
gi|403037892|gb|EJY49141.1| exodeoxyribonuclease III [Enterococcus faecium 506]
gi|403043490|gb|EJY54397.1| exodeoxyribonuclease III [Enterococcus faecium 503]
Length = 269
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 147/294 (50%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA VNK F +F + D + FC+QE + ++
Sbjct: 20 LKFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLP 67
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 68 GYYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------ 106
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+EY F+LV Y P ++ +L L +L W +L
Sbjct: 107 -----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYL 149
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ Y
Sbjct: 150 ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFY 209
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P +Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 210 PTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMGSDHCP 263
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF +F+ + ++ CIQE + ++ +
Sbjct: 2 KMISWNVNGIRA-------------CLKNGFMNFLERESPDIMCIQETKVQSGQVQLGLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W R+GY+G AV +K KP V +G G+NEH +
Sbjct: 49 GYFQYWNYAERKGYSGTAVFTKIKPNEVIYGI---------------GNNEHDGE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T++++++YLVNVY P ++ L+ L + W+ ++
Sbjct: 89 ------------------GRVITLKFDEYYLVNVYTPNSQRGLTRLEYRQKWDQDFLNYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPV+ GDLNVAH +D+ P TN+ +GFT +ER F N ++ GFLD R
Sbjct: 131 KTLENKKPVIFCGDLNVAHKEVDLKNPKTNVKNAGFTPEERKGFDNIVNSGFLDTFREFN 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ ++ GWR+DYF IS+ L+ +L D I ++ GSDH P
Sbjct: 191 KEPDNYSWWSYRFNARARNIGWRIDYFCISESLRGNLKDAFIMPEIMGSDHCP 243
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 151/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K+ R+ D ++FC+QE + ++ G
Sbjct: 3 KLISWNVNGLRA------------VMGKNFMEDFRKLDADIFCLQETKLQAGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 51 YFQYWNYAVKKGYSGTAIFTKEEPLSVSYGI---------------GVEEHDQE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E++ FYL+ VY P ++ +L L ++ + ++
Sbjct: 90 -----------------GRVITAEFKDFYLITVYVPNSQGELKRLPYRMEFEDAFLNYIL 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV GDLNVAH ID+ P TN +GF+ +ER FS LD G+LD R+ YP
Sbjct: 133 NLEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKFSRVLDNGYLDSFRYFYP 192
Query: 976 NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + + GWR+DYF++SKQL+ L IH +V GSDH P L L+L
Sbjct: 193 EKEEYSWWSYRTKARERNVGWRIDYFVVSKQLEKKLHSASIHTEVMGSDHCPVELILDL 251
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 170 bits (431), Expect = 3e-39, Method: Composition-based stats.
Identities = 110/307 (35%), Positives = 145/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +K F + D +VFC+QEI+ ++ G
Sbjct: 2 KLISWNVNGLRA------------VMKKGFMDFFTEADADVFCLQEIKLQEGQIEMDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K +P+ + +G GS EH +
Sbjct: 50 YYTYWNYAHKKGYSGTAIFTKEEPLSIQYGL---------------GSEEHDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++ +E++ Y+V VY P ++ L L +LLW + +K
Sbjct: 88 ----------------EGRMIALEFDGHYVVTVYTPNSQHGLLRLDYRLLWEEAILSFVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV+L GDLNVAH ID+ P N SGFT ER + FL GF+D RH +P
Sbjct: 132 TLDNQKPVILCGDLNVAHEEIDLKNPKANKKNSGFTPDERGKMTQFLTDGFVDTFRHFHP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y K GWR+DYF+ S++L L +IH DV GSDH P L + L
Sbjct: 192 TETGFYSWWSYRSNCREKNVGWRIDYFIASQKLLPRLKSAKIHADVWGSDHCPVELQIAL 251
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 155/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA + K F F + + ++ +QEI+ +L G
Sbjct: 5 KFVSWNVNGIRA--ALKKGFMESF----------EELNPDIIGLQEIKLSEGQLDLEIPG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G AV ++ +P+ V++G G EH +
Sbjct: 53 YHMYWNYAEKKGYSGTAVFTREEPLSVSYGI---------------GIEEHDKE------ 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY ++Y + Y P ++ L+ L ++ W +L
Sbjct: 92 -----------------GRVITLEYPEYYFITCYTPNSQRGLARLDYRMEWEEAFLEYLN 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+E+KPVVL GDLNVAHN ID+ P +N +GF+ +ER+ F+ L+ G+ D R+LYP
Sbjct: 135 RLDEVKPVVLCGDLNVAHNEIDLKNPESNRKNAGFSDEERDKFTKLLEAGYTDTFRYLYP 194
Query: 976 NHRI-YTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y+ + + GWR+DYF++SK L+ + + IH ++ GSDH P + LNL
Sbjct: 195 DKEDEYSWWSYFRQARDRNIGWRIDYFVVSKVLEDKIVEASIHQNIMGSDHCPVSVELNL 254
>gi|431779197|ref|ZP_19567393.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
gi|430642462|gb|ELB78239.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
Length = 250
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + D E
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI-----------------HDTE---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 89 -----------------GRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEETFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMGSDHCP 244
>gi|257881925|ref|ZP_05661578.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257890085|ref|ZP_05669738.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260558703|ref|ZP_05830892.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium C68]
gi|293563951|ref|ZP_06678361.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|294617705|ref|ZP_06697329.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|294623736|ref|ZP_06702567.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|383327975|ref|YP_005353859.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|415888406|ref|ZP_11549116.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|427396653|ref|ZP_18889412.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430831423|ref|ZP_19449474.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430846773|ref|ZP_19464627.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430856040|ref|ZP_19473744.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|431535444|ref|ZP_19517290.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|431638743|ref|ZP_19523370.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|431747991|ref|ZP_19536755.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|431753983|ref|ZP_19542648.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|431769960|ref|ZP_19558364.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|431774095|ref|ZP_19562408.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|431776933|ref|ZP_19565190.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|431781241|ref|ZP_19569389.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
gi|431784869|ref|ZP_19572905.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|257817583|gb|EEV44911.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257826445|gb|EEV53071.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260075162|gb|EEW63475.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Enterococcus
faecium C68]
gi|291596042|gb|EFF27311.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|291596861|gb|EFF28081.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|291604080|gb|EFF33604.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|364094896|gb|EHM37011.1| exodeoxyribonuclease III [Enterococcus faecium E4453]
gi|378937669|gb|AFC62741.1| exodeoxyribonuclease III [Enterococcus faecium Aus0004]
gi|425723323|gb|EKU86214.1| exodeoxyribonuclease III (xth) [Enterococcus durans FB129-CNAB-4]
gi|430481306|gb|ELA58462.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E0333]
gi|430538327|gb|ELA78619.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1133]
gi|430545329|gb|ELA85303.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1392]
gi|430595015|gb|ELB32963.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1731]
gi|430602222|gb|ELB39801.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1904]
gi|430614867|gb|ELB51838.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2297]
gi|430619906|gb|ELB56709.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2883]
gi|430634646|gb|ELB70761.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2369]
gi|430636029|gb|ELB72104.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1644]
gi|430639874|gb|ELB75728.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2560]
gi|430648707|gb|ELB84107.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6045]
gi|430649602|gb|ELB84970.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E6012]
Length = 250
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + D E
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI-----------------HDTE---- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 89 -----------------GRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMGSDHCP 244
>gi|257886665|ref|ZP_05666318.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257895240|ref|ZP_05674893.1| AP endonuclease [Enterococcus faecium Com12]
gi|293377228|ref|ZP_06623433.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|431752459|ref|ZP_19541142.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|431757305|ref|ZP_19545936.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|431762576|ref|ZP_19551136.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
gi|257822719|gb|EEV49651.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257831805|gb|EEV58226.1| AP endonuclease [Enterococcus faecium Com12]
gi|292644089|gb|EFF62194.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|430613950|gb|ELB50949.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E2620]
gi|430619594|gb|ELB56421.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3083]
gi|430623625|gb|ELB60304.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3548]
Length = 250
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMGSDHCP 244
>gi|425056645|ref|ZP_18460091.1| exodeoxyribonuclease III [Enterococcus faecium 505]
gi|403031334|gb|EJY42950.1| exodeoxyribonuclease III [Enterococcus faecium 505]
Length = 269
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 146/294 (49%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA VNK F +F + D + FC+QE + ++
Sbjct: 20 LKFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLP 67
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 68 GYYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI---------------HDT------ 106
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+EY F+LV Y P ++ +L L +L W +L
Sbjct: 107 -----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYL 149
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ Y
Sbjct: 150 ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFY 209
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P +Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 210 PTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMGSDHCP 263
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 157/305 (51%), Gaps = 46/305 (15%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K ++ K ++ + D + FC+QE + +L +G
Sbjct: 2 KFISWNVNGLRACVK-PKTDDEGNVKSKGFEAYFKDLDADFFCLQETKMQKGQLDLQFDG 60
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W R+GY+G A+ ++ P+ V +G G EHG +
Sbjct: 61 YQSYWNYAERKGYSGTAIYTRHTPLSVVYGM---------------GIEEHGHE------ 99
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSM------LSVKLLWNSF 909
GRV+T+E +FYLV VY P ++E + L ++ W
Sbjct: 100 -----------------GRVITMEMPEFYLVCVYTPNSQEAETTGGKPRRLPYRMQWEDD 142
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
R +L++L++ KPV++ GD+NVAH ID+ P TN +GFT +ER+ + LD GF D
Sbjct: 143 FRAYLQALDQKKPVIVCGDMNVAHEEIDIKNPKTNHLNAGFTDEERDKMTTLLDSGFTDS 202
Query: 970 HRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R L+P+ Y++W Y R + GWR+DYFL S +L+ H++ IH ++ GSDH P
Sbjct: 203 FRALHPDEVTYSWWSYRFRSREHNTGWRIDYFLTSDRLRDHITGASIHTEIYGSDHCPIE 262
Query: 1029 LYLNL 1033
L L+L
Sbjct: 263 LDLDL 267
>gi|227552171|ref|ZP_03982220.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257892875|ref|ZP_05672528.1| exodeoxyribonuclease, partial [Enterococcus faecium 1,231,408]
gi|227178703|gb|EEI59675.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257829254|gb|EEV55861.1| exodeoxyribonuclease [Enterococcus faecium 1,231,408]
Length = 269
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 146/294 (49%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA VNK F +F + D + FC+QE + ++
Sbjct: 20 LKFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLP 67
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 68 GYYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI---------------HDT------ 106
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR++T+EY F+LV Y P ++ +L L +L W +L
Sbjct: 107 -----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYL 149
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ Y
Sbjct: 150 ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFY 209
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P +Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 210 PTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMGSDHCP 263
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 147/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC-PE 794
K+ SWNVNG+RA + +K+ F+ + D ++ C+QE +C + + + P
Sbjct: 2 KLISWNVNGLRA------------VLKKNFLDFLAKEDPDILCLQETKCTPDDVEQLWPA 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
+ +W ++GY+G A+ +K KP+ V+ G + EH DME
Sbjct: 50 TFTTYWNTAQKKGYSGTAIFTKAKPISVSLGINCP---------------EH--DME--- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T EY +F+LVNVY P +K +L+ L+ + W+ +L
Sbjct: 90 ------------------GRVLTSEYPEFFLVNVYVPNSKRELTRLAYRQQWDCDFLSYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L + KPV+ GDLNVAH ID+A P N+ GFT +ER FS + GF+D R
Sbjct: 132 KKLEKKKPVIFCGDLNVAHTEIDLANPKANVKNHGFTPEERAGFSTVIKAGFIDTFREFE 191
Query: 975 PNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W P S+ GWR+DYFLIS L+ L I ++ GSDH P
Sbjct: 192 KGGGHYSWWSPMGGARSRNVGWRIDYFLISSALRPRLKRAFIQPNIPGSDHCP 244
>gi|431033474|ref|ZP_19491320.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
gi|430564575|gb|ELB03759.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1590]
Length = 250
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLTPRLADAKIHTDIMGSDHCP 244
>gi|431416509|ref|ZP_19512398.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|431759796|ref|ZP_19548405.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
gi|430588982|gb|ELB27145.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E1630]
gi|430625637|gb|ELB62257.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E3346]
Length = 250
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F +F + DG + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVNKNFLEVF-HELDG---------DFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKKPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L+ L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMGSDHCP 244
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--IVKKNFIDVF----------NELDADFFCVQETKLQDGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+GVAV +K +V +G +M+ EH +
Sbjct: 50 YHQYWDYAIKKGYSGVAVFAKKAAQKVYYGLNME---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYLVN Y P ++ +L L+ ++ W + R +L
Sbjct: 89 -----------------GRLLTLEYPNFYLVNCYTPNSQPELKRLAYRMTWENAFRDYLI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+L GDLNVAH ID+ TN +GF+ +ER + LD GF+D +R+ YP
Sbjct: 132 KLKSKKPVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKMTQLLDNGFIDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ GWR+DYF++S LK L + I+ ++ GSDH P + L+L
Sbjct: 192 DKEGVYSWWSYRFNARKNNAGWRIDYFIVSDNLKPTLKEATIYTEITGSDHCPVGVELDL 251
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 170 bits (430), Expect = 4e-39, Method: Composition-based stats.
Identities = 102/299 (34%), Positives = 148/299 (49%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + N FL+ + F D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRAIVKKN------FLEAFETF------DADFFCLQETKLQAGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P H + G EH +
Sbjct: 50 YTQYWNYAEKKGYSGTAIFAK-EPALAAH--------------YGIGIEEHDA------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY +F+LV Y P A+ +L L ++ W R +L
Sbjct: 88 ----------------EGRVITLEYPEFFLVTCYTPNAQNELRRLDYRMTWEDAFRAYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GDLNVAH +ID+ TN +GFT +ER FS L GF D R+ YP
Sbjct: 132 DLKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREKFSTLLSAGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ IY++W Y ++ GWR+DYF++S L L D +IH ++ GSDH P L LN
Sbjct: 192 DAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEILGSDHCPVELQLN 250
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 154/303 (50%), Gaps = 39/303 (12%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+K+ SWNVNG+RA + + F I + Q D +V +QE + ++
Sbjct: 10 WKLASWNVNGLRAVLKKDPSFIDI----------VHQLDADVIALQETKLQEGQVEIDLP 59
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH W R+GY+G AV ++ +P+ V H S+ P
Sbjct: 60 GYHQVWSYAQRKGYSGTAVFTRVEPLSVRHADSLL------------------------P 95
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
E A +GRV +E+++F+ V+VY P A+ +L+ + ++ W+ R L
Sbjct: 96 FAGE-GEAAELLAVAATEGRVCALEFDRFWFVDVYTPNAQNELARIDTRMAWDDAYRAFL 154
Query: 915 KSLNE--IKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
KSL + KPV+ GD NVAHN ID+ P +N G +GF+ +ER+ F+ LD GF D R
Sbjct: 155 KSLEDETGKPVITCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKFTELLDAGFTDTWRS 214
Query: 973 LYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
L P+ +Y++W Y ++ GWR+DYFL+S + S++ D I D+ GSDH P L
Sbjct: 215 LNPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDARIRNDIFGSDHCPVELE 274
Query: 1031 LNL 1033
+ L
Sbjct: 275 IEL 277
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 150/300 (50%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 16 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFAIQDTRVEPNEVQIDLP- 62
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF GV G
Sbjct: 63 GYYQYWNYAKRKGYAGTAVFTKEKPITVANGF-----GVPEVDG---------------- 101
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR +T+E+ FY ++V P + E L L + LW R ++
Sbjct: 102 -----------------EGRSITLEFSNFYFIDVQVPFSGEKLQRLDFRELWAQTFRNYV 144
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH+ ID+A P N +GFT ER FS L+ GF+D R+ +
Sbjct: 145 TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAGFIDTFRYFH 204
Query: 975 PNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
P+ YTYW Y D +K GWRLDYFL+S L+ + + +I ++ GSDH P L L++
Sbjct: 205 PDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMGSDHCPIELDLDI 264
>gi|350645454|emb|CCD59806.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 281
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 136/258 (52%), Gaps = 55/258 (21%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
WNFKI SWNVNGIRA + + +G ++++ + ++FCIQE +CPL K+P
Sbjct: 63 WNFKIVSWNVNGIRA------------VIKNNGMEYIKKENADIFCIQETKCPLHKIPSE 110
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ Y +FW + GYAG A+ SK P++VT+G +G +H
Sbjct: 111 AKVPSYQSFWSSADKAGYAGTALFSKISPIKVTYG----IGKKMHD-------------- 152
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSF 909
D+GRV+T EY++FYLV Y P + + L L + W+
Sbjct: 153 --------------------DEGRVITAEYDKFYLVTAYVPNSGQGLIRLPYREKEWDPD 192
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DLGFLD 968
+L+ L+ KPV++ GDLNVAH ID+A P TN +GFT QER+ F+ L +D
Sbjct: 193 FLEYLRKLDSTKPVIVCGDLNVAHEEIDLARPETNHKTAGFTDQERSGFTKLLSSANLID 252
Query: 969 VHRHLYPNHR-IYTYWPY 985
+RH YP+ R +Y++W Y
Sbjct: 253 TYRHFYPDRRGVYSFWSY 270
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIR+ + +K F+ ++D ++ C+QE + E +
Sbjct: 2 KIISWNVNGIRS------------ILKKGFLDFINKYDPDILCLQETKASQENVQLNLSQ 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G V +K KP+ V +G + +
Sbjct: 50 YHQYWNSAQKKGYSGTCVFTKEKPLNVENGILLDL------------------------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLRGHL 914
H + +GR +T+EY F+LVNVY P +K DLS L + W+ +L
Sbjct: 85 HDK-------------EGRTITLEYPTFFLVNVYVPNSKRDLSRLEYRCKQWDVDFLNYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K++ KPV+ GDLNVAH D+A P N+ GFT +ER F + ++ GF+D+ R
Sbjct: 132 KNIERKKPVIFCGDLNVAHTENDLAFPKANINNHGFTAEERAGFDHIVESGFVDIFREFE 191
Query: 975 PNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YT+W ++R + GWR+DYFLIS L+S + I DV GSDH P L L+L
Sbjct: 192 KSSGHYTWWSQFNRCRERDIGWRIDYFLISPSLRSRIKKASILKDVMGSDHCPITLELSL 251
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
Length = 251
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 151/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K+ R+ D ++FC+QE + ++ G
Sbjct: 3 KLISWNVNGLRA------------VMGKNFMEDFRKLDADIFCLQETKLQAGQIELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V++G G EH +
Sbjct: 51 YFQYWNYAVKKGYSGTAIFTKEEPISVSYGI---------------GVEEHDQE------ 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T E++ FYL+ VY P ++ +L L ++ + ++
Sbjct: 90 -----------------GRVITAEFKDFYLITVYVPNSQGELKRLPYRMEFEDAFLSYIL 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPVV GDLNVAH ID+ P TN +GF+ +ER FS LD G+LD R+ YP
Sbjct: 133 NLEKKKPVVYCGDLNVAHEEIDLKNPDTNHLSAGFSDEERAKFSRVLDSGYLDSFRYFYP 192
Query: 976 NHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y + + GWR+DYF++SK+L+ L IH ++ GSDH P L L+L
Sbjct: 193 EKEEYSWWSYRTKARERNVGWRIDYFVVSKKLEKKLHSASIHTEIMGSDHCPVELILDL 251
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F+++ +V CIQE + ++ +
Sbjct: 2 KMLSWNVNGIRA-------------CLKNGFMDFLKRESPDVMCIQETKVQSGQVQLGLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W R+GY+G AV +K KP V +G ++EH +
Sbjct: 49 GYFQYWNYAERKGYSGTAVFTKIKPNEVIYGIK---------------NSEHNGE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T++++++YLVNVY P ++ L+ L + W+ ++
Sbjct: 89 ------------------GRVITLKFDEYYLVNVYTPNSQRGLTRLKYRQKWDQDFLNYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPV+ GDLNVAH ID+ P TN+ +GFT +ER F N ++ GFLD R
Sbjct: 131 KTLENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERKGFDNIVNSGFLDTFREFN 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ ++ GWR+DYF IS+ L+++L D I ++ GSDH P
Sbjct: 191 KEPDNYSWWSYRFNARARNIGWRIDYFCISESLRNNLKDAFIMSEIMGSDHCP 243
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 150/297 (50%), Gaps = 55/297 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNVNG+RA + +KD F + + D +V C+QE + E++ E
Sbjct: 1 MKIISWNVNGVRA------------ITKKDFFDDISKMDPDVLCLQETKAQNEEVEEALS 48
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
YH ++ R+GY+GVA+LSK +P+ VT ++ G EH ++
Sbjct: 49 EMTDYHQYYNSAERKGYSGVAILSKKEPISVT---------------YDMGIAEHDTE-- 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ EY+ FYLVNVY P + + L L + W++
Sbjct: 92 ---------------------GRVICAEYDTFYLVNVYVPNSGQKLERLDYRKGWDTDFH 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVH 970
+LK++ + K V+L GDLNVAH ID+ N K +G+T E + NFL+ GF+D
Sbjct: 131 NYLKNIEKTKSVILCGDLNVAHQAIDLKNDKANYNKTAGYTQIEIDGMDNFLNEGFVDTF 190
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RH +P YTYW Y + + GWR+DYFL+S L ++ +EI + GSDH P
Sbjct: 191 RHFHPETVAYTYWSYRFKSRERNTGWRIDYFLVSNPLVEKVNKVEILSEYFGSDHCP 247
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 170 bits (430), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 147/296 (49%), Gaps = 54/296 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEKLPECPEGYH 797
SWNVNG+RA + K F F ++ + +VFC+QE + + + + P GY
Sbjct: 5 SWNVNGLRA--ALKKGFMESF----------KELNADVFCLQETKMQEGQAILDLP-GYE 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+++ ++GY+G A+ ++ KP+ V++G G EH
Sbjct: 52 QYFYSAEKKGYSGTAIFTRVKPLSVSYGI---------------GIEEHD---------- 86
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
++GRV+T+E YLV VY P AK L L ++ W R L L
Sbjct: 87 -------------NEGRVITMELPDVYLVTVYTPNAKRALERLDYRMAWEDSFRAFLLDL 133
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPVV+ GDLNVAH ID+ P +N +GFT +ER F L GF+D R LYP+
Sbjct: 134 RAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPDR 193
Query: 978 R-IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + GWR+DYFL+S +L+ ++ EIH D+ GSDH P L L
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHSDIFGSDHCPVSLTL 249
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F F + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVTHGFEDTF----------KDLDADFFCVQETKLQKGQIEIDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K KP+ VT+G G E+ ++
Sbjct: 50 YYQYWNYAERKGYSGTAIFTKHKPLNVTYGI---------------GIEEYDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY +Y++ Y P ++ L L ++ W + ++
Sbjct: 89 -----------------GRIITLEYANYYVITCYTPNSQPKLKRLEYRMSWEDAFKNYVD 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+ GDLNVAHN ID+ P TN +GF+ QER F+ L GF D RH YP
Sbjct: 132 QLKKDKPVIFCGDLNVAHNEIDLKNPKTNHKNAGFSDQERAKFTELLQSGFTDTFRHFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ IY++W Y ++ GWR+DYF+ S L L D +IH ++ GSDH P L ++L
Sbjct: 192 DLTGIYSWWSYRFNARKNNAGWRIDYFVTSNDLDDKLKDAKIHTEIFGSDHCPVELDIDL 251
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 150/300 (50%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 13 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFAIQDTRVEPNEVQIDLP- 59
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF GV G
Sbjct: 60 GYYQYWNYAKRKGYAGTAVFTKEKPITVANGF-----GVPEVDG---------------- 98
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR +T+E+ FY ++V P + E L L + LW R ++
Sbjct: 99 -----------------EGRSITLEFSNFYFIDVQVPFSGEKLQRLDFRELWAQTFRNYV 141
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH+ ID+A P N +GFT ER FS L+ GF+D R+ +
Sbjct: 142 TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAGFIDTFRYFH 201
Query: 975 PNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
P+ YTYW Y D +K GWRLDYFL+S L+ + + +I ++ GSDH P L L++
Sbjct: 202 PDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMGSDHCPIELDLDI 261
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 691 ENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQ 750
EN G S+ + + E PI+ + DP + K D N KI SWNV+G+RAW +
Sbjct: 16 ENDSGSASAKKPKKTKEPEAPIL-YEDPPDKMTSK---DGRSANMKITSWNVDGLRAWVK 71
Query: 751 VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFW-FPGTR 805
L E +C + LP PE H +W +
Sbjct: 72 KGGL-------------------------DETKCAEKDLPAEITSMPEYPHKYWAVSDDK 106
Query: 806 QGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYA 865
+GY+GVA+LSKT+P++VT+G G EH +
Sbjct: 107 EGYSGVAMLSKTEPLKVTYGI---------------GKEEHDKE---------------- 135
Query: 866 DASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVL 925
GRV+T E+ F+LV Y P A L L + W+ + +L L+ KP+VL
Sbjct: 136 -------GRVITAEFPTFFLVTAYVPNASRGLVRLDYRKTWDVDFQAYLTELDVQKPLVL 188
Query: 926 AGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWP 984
GDLNVAH ID+ P N +GFT +ER FS L GF+D R LYP YT+W
Sbjct: 189 CGDLNVAHQEIDLKNPKGNKKNAGFTPEEREGFSQLLAAGFVDSFRELYPEQANAYTFWT 248
Query: 985 Y-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y + +K GWRLDYFL+S L L D +I GSDH P L+L +
Sbjct: 249 YMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAMGSDHCPITLHLAV 298
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K+ F+ + V QE + + L G
Sbjct: 2 KIVSWNVNGIRA------------ALKKNLIDFIENNMFEVIMFQETKGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP+ V G +K F+
Sbjct: 50 YEVISFPAKRKGYSGVMTLTKIKPINVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E + FY++N Y P A ++L L KL +N+ + +
Sbjct: 87 ---------------DEGRTVTLELKDFYVINAYFPRAGDNLERLDFKLKFNNEIENFVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GD N+AH +ID A +N G T QER++FS+FL LGF+D R+L+P
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGA--FSNPTIPGLTPQERSWFSHFLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y + K G RLDY ++S++LK + +I D++GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGKARDKNLGLRLDYCIVSEELKDRIKMADILIDIQGSDHAPIILEL 246
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 169 bits (429), Expect = 6e-39, Method: Composition-based stats.
Identities = 100/299 (33%), Positives = 146/299 (48%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F +F D + FC+QE + ++
Sbjct: 2 KFISWNVNGLRA--VLKKNFLEVFTDL----------DADFFCLQETKLQAGQVDLDLPD 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP+ VT G +
Sbjct: 50 YYQYWNYAQKKGYSGTAIFTKKKPLAVTKGLGL--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
A +GRV+T+EYE FYLVN Y P +++ L L +L W + HL
Sbjct: 83 -----------AEFDQEGRVLTLEYEDFYLVNCYTPNSQDKLKRLDFRLQWEAAFSDHLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV+L GDLNVAHN ID+ P N +GF+IQER + L GF D RH+Y
Sbjct: 132 NLATKKPVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTALLARGFTDTFRHIYL 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y ++ ++ GWR+DYF+ S L + D +I ++ GSDH P +L N
Sbjct: 192 DKTGAYSWWSYRFNARARNAGWRIDYFICSNALLPQVKDSQILPEILGSDHCPVMLETN 250
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/338 (33%), Positives = 168/338 (49%), Gaps = 75/338 (22%)
Query: 717 DPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFL 760
+P+ IL HK+ Q + +N K+ SWNVNG+RA ++ F+++ L
Sbjct: 203 EPWTILAHKKPQKSWIAYNPRTMRPPPLAEDTKFVKLMSWNVNGLRALLKLEG-FSAVEL 261
Query: 761 QQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGY-HAFWFPG-TRQGYAGVAVLSKTK 818
Q++ F +V C QE + +GY ++FW ++ GY+G A++S+ K
Sbjct: 262 AQRENF--------DVLCFQETKLQ-------AKGYENSFWTCSHSKLGYSGTAIVSRVK 306
Query: 819 PVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTV 878
P+ V++G G +H S+ GR++T
Sbjct: 307 PLSVSYGL---------------GIADHDSE-----------------------GRLVTA 328
Query: 879 EYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHID 937
E++ FYL+N Y P + + L LS ++ W+ L ++K L + KPV+L GDLN AH ID
Sbjct: 329 EFDSFYLLNAYVPNSGDGLKRLSYRVSQWDLSLSNYMKELEKSKPVILNGDLNCAHQEID 388
Query: 938 VALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM-KGW 995
+ P N +GFT +ER F +NFL GF+D R +P+ YTYW Y K KGW
Sbjct: 389 IYNPAGNRRNAGFTDEERQSFETNFLSRGFVDSFRKQHPDVVGYTYWGYRHGGRKTNKGW 448
Query: 996 RLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
RLDYFL+S+ + + D I DV GSDH P L L +
Sbjct: 449 RLDYFLVSESISDQVHDSYIVPDVTGSDHCPIGLVLKV 486
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 169 bits (429), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPE 794
K SWNVNG+RA + F + F D ++F IQ+ R P E + P
Sbjct: 2 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFAIQDTRVEPNEVQIDLP- 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GYAG AV +K KP+ V +GF +
Sbjct: 49 GYYQYWNYAKRKGYAGTAVFTKEKPITVANGFGV-------------------------- 82
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE+ +GR +T+E+ FY ++V P + E L L + LW R ++
Sbjct: 83 --PEVDG----------EGRSITLEFSNFYFIDVQVPFSGEKLQRLDFRELWAQTFRNYV 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPV++ GD++VAH+ ID+A P N +GFT ER FS L+ GF+D R+ +
Sbjct: 131 TKLMQYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAGFIDTFRYFH 190
Query: 975 PNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
P+ YTYW Y D +K GWRLDYFL+S L+ + + +I ++ GSDH P L L++
Sbjct: 191 PDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMGSDHCPIELDLDI 250
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 169 bits (428), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF ++ D ++FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--VMKKGFPEIF----------KELDADIFCLQETKLQAGQIEMDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ ++ KP+ V++G ++ H H
Sbjct: 50 YEQYWNYADKKGYSGTAIFTRIKPLSVSYGMNIDE----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E+E FY + Y P ++ +L+ L ++ W R ++
Sbjct: 88 ----------------EGRLITLEFEDFYFITCYTPNSQSELARLDYRMRWEDDFRNYVT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN KPV+ GDLNVAH ID+ P TN +GF+ +ER + L GF D R+ YP
Sbjct: 132 ELNRTKPVIFCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTELLAAGFTDTWRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y + GWR+DYF+ S L S L + I+ ++EGSDH P
Sbjct: 192 DKEGVYSWWSYRFKARQNNSGWRIDYFITSSALDSRLKEALIYTNIEGSDHCP 244
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 148/307 (48%), Gaps = 59/307 (19%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N KI +WNV G++AW + K G ++ + ++F QE + K P P
Sbjct: 88 NLKISAWNVGGMKAWIK------------KGGIDYLTKESPDIFFAQETKIDATKPP--P 133
Query: 794 EG----YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E YH + ++GY+GVA+ SK +P+ VT G G EH +
Sbjct: 134 EADLDDYHITYNAAEKKGYSGVALFSKKEPLSVTKGM---------------GIEEHDKE 178
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GR++T EY+ FY V VY P + L L + W+
Sbjct: 179 -----------------------GRLITAEYDSFYFVGVYVPNSSRKLVRLDYRQEWDKD 215
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLD 968
+LK L+ KPV+ GD+NVAH ID+ P +N K+ GFT QER F++ LD+GF+D
Sbjct: 216 FHAYLKKLDAKKPVICCGDMNVAHEEIDLKNPKSNRNKTPGFTDQEREGFTSLLDMGFVD 275
Query: 969 VHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYP Y++W Y +K GWRLDY +ISK L L D ++ GSDH P
Sbjct: 276 SFRHLYPEEADAYSFWTYMGNCRAKNVGWRLDYGVISKALVPKLCDNQMRLQTFGSDHCP 335
Query: 1027 QILYLNL 1033
++ L +
Sbjct: 336 MVVSLAM 342
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/297 (34%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWN+NG+R+ +K+ +F+ + ++ QE R + L G
Sbjct: 2 KIVSWNINGLRS------------ALKKNLVNFLESNTFDIVMFQETRGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP++V G +K F+
Sbjct: 50 YEVISFPARRKGYSGVMTLTKIKPIKVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +++E + FYL+N Y P A ++L L KL +N+ + L
Sbjct: 87 ---------------DEGRTVSLELKDFYLINAYFPRAGDNLERLDFKLKFNNGIENFLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E+KPV+L GD N+AH ID A ++ G T QER +F++ L LGF+D R+L+P
Sbjct: 132 KLREVKPVILCGDFNIAHQSIDAA--FSDPKIPGLTPQERAWFTHLLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y K G RLDY ++S++LK + +I DV+GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGNAREKNLGLRLDYCIVSEELKDSIKMADILTDVQGSDHAPIILEL 246
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 169 bits (428), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/356 (33%), Positives = 174/356 (48%), Gaps = 84/356 (23%)
Query: 689 KIENRLGCDSSNETSYAEVEEVPIID-FNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRA 747
K ++ + D NET EVEE + D N P I+ +WNV G+RA
Sbjct: 96 KKQSSMKVDEQNET---EVEESVVDDSANRPLTII----------------TWNVAGLRA 136
Query: 748 WSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWF------ 801
L +KD F+ ++ +QE +C E P G+ F
Sbjct: 137 ------------LVKKDACRFITSDKADIVLLQETKCA-----EVPTGFPVKGFKAFVGE 179
Query: 802 -PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELT 860
PG + G+AGV +LSK KP++V + +E+ P EL
Sbjct: 180 NPG-KTGHAGVILLSKQKPIKVQ------------------------TKLENVPE--EL- 211
Query: 861 TIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEI 920
G++ GR++ EY++FYL+N Y P + L L+ + +W+ F ++K L+
Sbjct: 212 --------GVE-GRLIVAEYDKFYLINAYVPNSGRGLVNLAKRKIWDDFFIDYIKQLDAS 262
Query: 921 KPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVHRHLYPNHR- 978
K V+ AGDLNVAH ID+A P TN K +GFT QER F+ L GF+DV+R L+P+
Sbjct: 263 KAVIYAGDLNVAHEEIDLANPKTNRNKTAGFTDQERGDFTRLLQAGFVDVYRSLHPDKTG 322
Query: 979 IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YT+W ++ + GWRLDYF++S++L + EI+ V GSDH P L +NL
Sbjct: 323 AYTFWSTMHNARATNIGWRLDYFVVSERLMDKVVKCEINSRVMGSDHCPLTLQINL 378
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 46/298 (15%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K + + K ++ ++ D + FC+QE + ++ +G
Sbjct: 2 KFISWNVNGLRACVKP-KTDDAGNVTSKGFEAYFKELDADFFCLQETKLQAGQIDLQFDG 60
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G AV ++ +P+ VT+G +G H H
Sbjct: 61 YQSYWNYAEKKGYSGTAVFTRHEPLGVTYG----IGKEEHDH------------------ 98
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLS------MLSVKLLWNSF 909
+GRV+T+EY FYL+ Y P +++ + L ++ W
Sbjct: 99 ----------------EGRVITLEYPDFYLITCYTPNSQDTIKGELKPRRLGYRMTWEDD 142
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
R ++ L++ KPV++ GDLNVAH +D+ P TN +GFT +ER + L GFLD
Sbjct: 143 FREYMMRLDKNKPVIMCGDLNVAHEEMDLKNPKTNHNNAGFTDEEREKMTTLLGSGFLDS 202
Query: 970 HRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R LYP Y++W Y R K GWR+DYF+ S +L+ ++D +IH ++ GSDH P
Sbjct: 203 FRMLYPEQVTYSWWSYRMRAREKNTGWRIDYFITSDRLRDRIADAKIHTEIMGSDHCP 260
>gi|424762341|ref|ZP_18189850.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
gi|402425021|gb|EJV57179.1| exodeoxyribonuclease III [Enterococcus faecium TX1337RF]
Length = 253
Score = 169 bits (427), Expect = 9e-39, Method: Composition-based stats.
Identities = 98/294 (33%), Positives = 145/294 (49%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + NK F +F + D + FC+QE + ++
Sbjct: 4 LKFISWNVNGLRAIA--NKNFLEVF----------HELDADFFCLQETKLQAGQIDLDLP 51
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K + T+G + + D E
Sbjct: 52 GYYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI-----------------HDTE--- 91
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR++T+EY F+LV Y P ++ +L L +L W +L
Sbjct: 92 ------------------GRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYL 133
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ Y
Sbjct: 134 ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFY 193
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P +Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 194 PTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMGSDHCP 247
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 169 bits (427), Expect = 9e-39, Method: Composition-based stats.
Identities = 103/308 (33%), Positives = 150/308 (48%), Gaps = 54/308 (17%)
Query: 727 RQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL 786
R++Q + K+ SWNVNG+RA L SF D ++F +QE +
Sbjct: 9 RKEQ---DMKLISWNVNGLRAC-----------LTHDFAASFAAL-DADIFSVQETKMQP 53
Query: 787 EKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ PEGY + + ++GY+G A KT P+ VT G +G H H
Sbjct: 54 GQADFAPEGYTEYTYSAEKKGYSGTACWCKTAPLAVTTG----IGREEHDH--------- 100
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+GRV+T+EY FYLVN Y P +++ L L ++ W
Sbjct: 101 -------------------------EGRVLTLEYPGFYLVNCYTPNSQDGLKRLDYRMTW 135
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
R +L L+ KPV+L GDLNVAH ID+ TN +GFT QER + L GF
Sbjct: 136 EDAFRAYLLELDAKKPVILCGDLNVAHTEIDIKNAKTNRMSAGFTDQERAKMTELLAAGF 195
Query: 967 LDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
D R ++P+ Y++W Y + K GWR+DYF++S ++ ++ EIH +V GSDH
Sbjct: 196 TDTFRAVHPDEVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKVTAAEIHNEVFGSDHC 255
Query: 1026 PQILYLNL 1033
P L ++L
Sbjct: 256 PVELVIDL 263
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 169 bits (427), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 55/304 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
K+ SWNVNG+RA +KD M D +V C+QE + E++ E C
Sbjct: 1 MKLVSWNVNGVRA------------AIKKDFLQSMASLDCDVLCLQETKAQDEQVIEALC 48
Query: 793 P-EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH F ++GY+G +++++ +P+ VT + G EH D E
Sbjct: 49 ELNGYHIFTNSAVKKGYSGTSIITRIQPIDVTK---------------DMGIEEH--DQE 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ E+ YLV VY P + DL LS + W++
Sbjct: 92 ---------------------GRVLCAEFSDLYLVTVYTPNSGNDLKRLSYRAQWDADFL 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVH 970
++K L E KPVV+ GDLN AH ID+A P N KS G+T QE + N + G++D
Sbjct: 131 SYIKKLEEKKPVVICGDLNAAHRDIDLARPKPNYNKSAGYTQQEIDGIDNLVAAGYVDTF 190
Query: 971 RHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R+++P Y++W Y + GWR+DYFL+S +L+ + D EIH D+ GSDH P +
Sbjct: 191 RYVHPEKVKYSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHNDIHGSDHCPVSV 250
Query: 1030 YLNL 1033
L++
Sbjct: 251 QLSI 254
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F + F + D + F IQE + +L G
Sbjct: 2 KFISWNVNGLRA--VVKKDFAATF----------NKLDADFFSIQETKMQEGQLELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ V +G + + F+
Sbjct: 50 YHQYFNYAERKGYSGTALFAKQEPMSVMYG--------IQSDEFDH-------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR +T+EY FYLV Y P + L L ++ W++ + +L
Sbjct: 88 ----------------EGRAITLEYPDFYLVTSYVPNSGAGLKRLDFRMGWDAAFQDYLS 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV+L GDLNVAH ID+ P +N +GFT +ER+ F+ FLD+GF+D RH YP
Sbjct: 132 RLDKEKPVILCGDLNVAHKTIDLKNPQSNHHNAGFTDEERDSFTRFLDMGFMDSFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ IY++W Y + + GWR+DYF+ S +L ++D +I D+ GSDH P L L
Sbjct: 192 DMEDIYSWWSYRFHARDRNAGWRIDYFVTSNRLAPKIADSKILTDIYGSDHCPVALIL 249
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 169 bits (427), Expect = 1e-38, Method: Composition-based stats.
Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA + K F +F + D ++FCIQE + +L G
Sbjct: 3 KMISWNVNGIRAC--IEKGFLDVF----------KNMDADIFCIQESKVSEGQLELDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVA+ +K KPV+VT+G G EH
Sbjct: 51 YYDYWNYAQKKGYSGVAMFTKDKPVKVTYGM---------------GIEEHD-------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GR++T E+E +Y++ Y P ++ L+ L ++ W ++K
Sbjct: 88 ---------------NEGRIITAEFENYYMLTCYTPNSQRQLTRLEYRMDWEDAFLDYIK 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KP++ GDLNVA ID+ P TN +GFT +ER + GF D R+LYP
Sbjct: 133 NLSQKKPLIYCGDLNVAFADIDLKNPKTNRKNAGFTDEERQKMAVVQASGFTDSFRYLYP 192
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y SK GWR+DYF++S LK+ + IH D+ GSDH P L +++
Sbjct: 193 DLEGVYSWWSYMGGARSKNIGWRIDYFMVSDSLKNCIKQARIHTDIMGSDHCPVELEIDI 252
>gi|359482196|ref|XP_002274714.2| PREDICTED: apurinic endonuclease-redox protein-like [Vitis vinifera]
Length = 479
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 183/365 (50%), Gaps = 76/365 (20%)
Query: 698 SSNETSYAEVEEVPIIDFN----DPFRILEHKRRQDQY-PWN---------------FKI 737
+S+ +S ++ ID + +P+ +L HK+ Q+ + P+N K+
Sbjct: 162 ASSRSSIKQIAVTERIDISMNEPEPWTVLTHKKPQEGWIPYNPRTMRPPPLTGDAKFVKL 221
Query: 738 GSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPE-CP 793
SWNVNG+R + +K F+++ L Q++ D +V +QE + +E + +
Sbjct: 222 MSWNVNGLRGLLK-SKGFSALKLAQRE--------DFDVLSLQETKLQEKDVEAIKQSVI 272
Query: 794 EGY-HAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
EGY ++FW ++ GY+G A++S+ KP+ V +G G ++H S+
Sbjct: 273 EGYENSFWTCSVSKLGYSGTAIISRIKPLSVRYGL---------------GISDHDSE-- 315
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFL 910
GR++T E+E FYL++ Y P + + L LS ++ W+S L
Sbjct: 316 ---------------------GRLLTAEFESFYLLSGYVPNSGDGLKRLSYRVTQWDSAL 354
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFS-NFLDLGFLDV 969
++K L + KPV+L GDLN AH ID+ P N +GFT +ER NFL GF+D
Sbjct: 355 GSYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGFVDS 414
Query: 970 HRHLYPNHRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +P YTYW Y + K KGWRLDYFL+S+ + + D I D+ GSDH P
Sbjct: 415 FRKQHPGVVGYTYWGYRNGCRKSNKGWRLDYFLVSESIADKVHDSYILPDIGGSDHCPIG 474
Query: 1029 LYLNL 1033
L L L
Sbjct: 475 LVLKL 479
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 155/298 (52%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K S+NVNG+RA V K F F +Q D + FC+QE + +L +G
Sbjct: 2 KCISFNVNGLRA--IVGKNFEEDF----------KQLDADFFCLQETKMQAGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y++++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YYSYFNYAERKGYSGTAIYTKHEPLNVTYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY++F+ + VY P + +L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDKFFFITVYTPNSGSELKRLEYRMSWEEDFKNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+LN+ K VV+ GDLNVAH ID+ P +N+ +GFT +ER F+ LD GF+D R+ P
Sbjct: 132 ALNKTKGVVVCGDLNVAHTEIDLKNPKSNMKNAGFTPEEREKFTKLLDAGFIDTFRYYNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y ++ GWR+DYFL+S+ L+ +L IH ++ GSDH P L L
Sbjct: 192 DLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEEYLESAAIHNEIFGSDHCPVELVL 249
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILGSDHCP 244
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 151/302 (50%), Gaps = 53/302 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNG+RA + K F + +QK F C+QE + + +
Sbjct: 1 MKLISWNVNGLRA--CLKKGFLDFYQEQKPDFC----------CLQETKMEQGQADVDLG 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
E +W ++GY+G AV + +P+ V +G G EH
Sbjct: 49 ENMLEYWNSAEKKGYSGTAVFTPHQPLAVRYGM---------------GKEEHDH----- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GR++T+EYE+FYLV Y P ++ +L L ++ W LR +
Sbjct: 89 ------------------EGRLITLEYEKFYLVCCYTPNSQSELKRLDYRMEWEDDLRAY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L+++KPV+ GDLNVAH ID+ P TN +GFT QER + L GF D R L
Sbjct: 131 LMELDKVKPVIYCGDLNVAHREIDLKNPKTNRMNAGFTDQEREKMTTLLSSGFTDTFRFL 190
Query: 974 YPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YP+ +Y++W Y + K GWR+DYF++S +L++ + EI VEGSDH P +L L
Sbjct: 191 YPDLEGVYSWWSYRFQARKKNAGWRIDYFIVSDRLQNAIKRAEILTQVEGSDHCPVLLEL 250
Query: 1032 NL 1033
++
Sbjct: 251 DI 252
>gi|257897862|ref|ZP_05677515.1| AP endonuclease [Enterococcus faecium Com15]
gi|257835774|gb|EEV60848.1| AP endonuclease [Enterococcus faecium Com15]
Length = 250
Score = 168 bits (426), Expect = 1e-38, Method: Composition-based stats.
Identities = 98/293 (33%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA VNK F F + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRAI--VNKNF----------LEFFHELDADFFCLQETKLQAGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K + T+G + + H +
Sbjct: 50 YYQYWNYAERKGYSGTAIFAKEPALNATYGMGIDI---------------HDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY F+LV Y P ++ +L L +L W +L+
Sbjct: 88 ----------------EGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEEAFYNYLE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV++ GDLNVAH ID+ TN +GFT +ER S LD GF+D R+ YP
Sbjct: 132 NLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGFIDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+Y++W Y ++ GWR+DYFL SK L L+D +IH D+ GSDH P
Sbjct: 192 TQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMGSDHCP 244
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella morbillorum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella morbillorum M424]
Length = 254
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 154/299 (51%), Gaps = 52/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K S+NVNG+RA VNK F F ++ D + FC+QE + +L +G
Sbjct: 2 KCISFNVNGLRA--IVNKNFEEDF----------KKLDADFFCLQETKMQEGQLDLQFDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y++++ R+GY+G A+ +K KP+ V +G G +EH +
Sbjct: 50 YYSYFNYAERKGYSGTAIYTKHKPLNVNYGI---------------GIDEHDT------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY++F+ + VY P + +L L ++ W + +L
Sbjct: 88 ----------------EGRVITLEYDKFFFITVYTPNSGSELKRLDYRMTWEEDFKNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ K VV+ GDLNVAH ID+ P +N +GFT +ER F+ LD GF+D R+ P
Sbjct: 132 ELNKTKGVVVCGDLNVAHTEIDLKNPKSNTKNAGFTPEEREKFTKLLDAGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
Y++W Y ++ GWR+DYFL S+ L+ +L +IH D+ GSDH P + LN
Sbjct: 192 ELTGAYSWWSYRFNARKNNAGWRIDYFLTSRDLEKYLVSAKIHNDILGSDHCPVEVVLN 250
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 168 bits (426), Expect = 1e-38, Method: Composition-based stats.
Identities = 103/303 (33%), Positives = 152/303 (50%), Gaps = 42/303 (13%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
++ SWNVNG+RA + F+ I + ++ IQE + ++
Sbjct: 19 YRFASWNVNGLRALMKKEPDFSEI----------AASLNADILAIQETKLQEGQIDLDLA 68
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH W R+GY+G AV S+ +P+R +M VV E G +E
Sbjct: 69 GYHQTWSYAARKGYSGTAVFSREQPIRTLRADAML--DVV----------EGGELLEPA- 115
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
I +GRV +E+E+F+ +VY P +++ L+ L V+L W+ R L
Sbjct: 116 ---------------IREGRVCALEFERFWFADVYTPNSQDGLARLPVRLAWDEAYRAFL 160
Query: 915 KSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
K L + KPVV GD NVAHN ID+ P +N G +GF+ +ER FS L+ GF D R+
Sbjct: 161 KQLERMGDKPVVTCGDFNVAHNEIDLRNPKSNRGNAGFSDEERASFSRLLEAGFTDTFRY 220
Query: 973 LYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
LYP+ R Y++W Y + GWR+DYFL+S ++ + + I DV GSDH P L
Sbjct: 221 LYPDVRDAYSWWSYRFHARRTNAGWRIDYFLVSDSVRDRIVEATIRQDVFGSDHCPVELV 280
Query: 1031 LNL 1033
+ L
Sbjct: 281 IAL 283
>gi|297739882|emb|CBI30064.3| unnamed protein product [Vitis vinifera]
Length = 542
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 183/365 (50%), Gaps = 76/365 (20%)
Query: 698 SSNETSYAEVEEVPIIDFN----DPFRILEHKRRQDQY-PWN---------------FKI 737
+S+ +S ++ ID + +P+ +L HK+ Q+ + P+N K+
Sbjct: 225 ASSRSSIKQIAVTERIDISMNEPEPWTVLTHKKPQEGWIPYNPRTMRPPPLTGDAKFVKL 284
Query: 738 GSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPE-CP 793
SWNVNG+R + +K F+++ L Q++ D +V +QE + +E + +
Sbjct: 285 MSWNVNGLRGLLK-SKGFSALKLAQRE--------DFDVLSLQETKLQEKDVEAIKQSVI 335
Query: 794 EGY-HAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
EGY ++FW ++ GY+G A++S+ KP+ V +G G ++H S+
Sbjct: 336 EGYENSFWTCSVSKLGYSGTAIISRIKPLSVRYGL---------------GISDHDSE-- 378
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFL 910
GR++T E+E FYL++ Y P + + L LS ++ W+S L
Sbjct: 379 ---------------------GRLLTAEFESFYLLSGYVPNSGDGLKRLSYRVTQWDSAL 417
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFS-NFLDLGFLDV 969
++K L + KPV+L GDLN AH ID+ P N +GFT +ER NFL GF+D
Sbjct: 418 GSYMKELEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGFVDS 477
Query: 970 HRHLYPNHRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +P YTYW Y + K KGWRLDYFL+S+ + + D I D+ GSDH P
Sbjct: 478 FRKQHPGVVGYTYWGYRNGCRKSNKGWRLDYFLVSESIADKVHDSYILPDIGGSDHCPIG 537
Query: 1029 LYLNL 1033
L L L
Sbjct: 538 LVLKL 542
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 149/298 (50%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F IF + D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVKKGFVEIF----------EELDADFFCLQETKLQEGQIELDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP+ V++G G EH +
Sbjct: 50 YYDYWNYAEKKGYSGTAIFTKHKPLDVSYGI---------------GKPEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+ Y +Y+V Y P +K +L L ++ W + +LK
Sbjct: 89 -----------------GRVITLSYPNYYVVTCYTPNSKSELKRLDYRMQWEDDFQLYLK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH +ID+ TN +GF+ +ER FS LD GF+D R+ YP
Sbjct: 132 KLDSEKPVILCGDLNVAHENIDLKNWKTNQLSAGFSKEERMKFSALLDAGFIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ YT+W Y ++ GWR+DYF +S +L+ HL + I D+ GSDH P L L
Sbjct: 192 DLEGAYTWWNYRFNARKTNAGWRIDYFCVSTRLQDHLQEARILDDIVGSDHCPVELIL 249
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 168 bits (426), Expect = 1e-38, Method: Composition-based stats.
Identities = 98/299 (32%), Positives = 149/299 (49%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA T F + F+ + D ++F +QE + + PEG
Sbjct: 2 KLISWNVNGLRA------CLTHGF---AESFAAL---DADIFSVQETKMQPGQADFAPEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y + + ++GY+G A KT P+ VT G ++ H H
Sbjct: 50 YTEYTYSAEKKGYSGTACWCKTAPLAVTTGIGLEQ----HDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY FYLVN Y P +++ L L ++ W R +L
Sbjct: 88 ----------------EGRVLTLEYPGFYLVNCYTPNSQDGLKRLDYRMEWEDAFRAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV+L GDLNVAH +D+ TN +GFT QER + L GF D R ++P
Sbjct: 132 ALDAKKPVILCGDLNVAHTEMDIKNAKTNRMSAGFTDQERAKMTELLAAGFADSFRVVHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYF++S+++ + EIH ++ GSDH P L ++L
Sbjct: 192 DEVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADRIRAAEIHNEIFGSDHCPVELQIDL 250
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 151/302 (50%), Gaps = 56/302 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECP- 793
K SWNVNG+RA K GF+ F + D + F +QE + ++L +
Sbjct: 2 KFISWNVNGLRA-------------AMKKGFADFFHEQDADFFALQETKMQPDQLEDAMK 48
Query: 794 -EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
EGYH + R+GY+G + +K +P+ VT+ ++ G V
Sbjct: 49 FEGYHMYMNSAERKGYSGTLIYTKHEPLSVTY----EIEGDV------------------ 86
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GRV+T+EY FY V Y P +K+ L L ++ W LR
Sbjct: 87 -----------------TKEGRVITLEYPDFYFVCAYVPNSKDGLLRLPYRIEWEEMLRK 129
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
HL L++ KPV+ GDLNVAH ID+ P TN GF+ +ER + LD GF D R
Sbjct: 130 HLMELDKKKPVIYTGDLNVAHEEIDLKNPATNHKNPGFSDEERAAMTKLLDSGFSDTFRE 189
Query: 973 LYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
LYP+ + +++W Y + + GWR+DYFL+S++L +++ D I + EGSDH P L +
Sbjct: 190 LYPDTQKFSWWSYRMKARERNVGWRIDYFLVSERLLANVQDALIFDETEGSDHCPVGLNI 249
Query: 1032 NL 1033
NL
Sbjct: 250 NL 251
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 146/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F FL D + FC+QE + +L G
Sbjct: 2 KFISWNVNGLRA--CVGKNFKEEFLAL----------DADFFCLQETKMQEGQLDLSFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ V+ G +G H H
Sbjct: 50 YESYWNYADKKGYSGTAIFTKHTPLSVSRG----IGIEEHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E FYLV VY P +++ L L ++ W + + +L
Sbjct: 88 ----------------EGRVITLEMADFYLVTVYTPNSQDQLKRLPYRMQWETDFQSYLH 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL++ KPV++ GD+NVAH ID+ P +N +GF+ +ER + L GF D R LYP
Sbjct: 132 SLDKHKPVIVCGDMNVAHEEIDLKNPKSNHFNAGFSDEEREKMTTLLSNGFTDTFRFLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + K GWR+DYFLIS +L+ L + +IH ++ GSDH P
Sbjct: 192 EQVTYSWWSYRFKAREKNIGWRIDYFLISDRLRESLEEAKIHTEILGSDHCP 243
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 168 bits (425), Expect = 2e-38, Method: Composition-based stats.
Identities = 108/307 (35%), Positives = 145/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 64 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSESKLPPELQ 111
Query: 791 ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P + +W P ++GY+GV +LS+ P+ VT+G G EH
Sbjct: 112 DLPGLTYQYWSSPSDKEGYSGVGLLSRQCPLSVTYGI---------------GEEEHDQ- 155
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
+GRV+ E+E F LV Y P A L L + W+
Sbjct: 156 ----------------------EGRVIVAEFEAFVLVTAYVPNAGRGLVRLEYRQRWDEA 193
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L+ KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 194 FRKFLKGLSAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 253
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYP YT+W Y + +K GWRLDYFL+S+ L L D +I GSDH P
Sbjct: 254 SFRHLYPEAAYAYTFWTYMMNARAKNVGWRLDYFLLSQALLPALCDSKIRSKALGSDHCP 313
Query: 1027 QILYLNL 1033
L L L
Sbjct: 314 ITLLLAL 320
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K+ F+ + V QE + + L G
Sbjct: 2 KIVSWNVNGIRA------------ALKKNLIDFIENNMFEVIMFQETKGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP+ V G +K F+
Sbjct: 50 YEVISFPAKRKGYSGVMTLTKIKPINVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E + FY++N Y P A ++L L KL +N+ + +
Sbjct: 87 ---------------DEGRTVTLELKDFYVINAYFPRAGDNLERLDFKLKFNNEIENFVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GD N+AH +ID A ++ G T QER++FS+FL LGF+D R+L+P
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGA--FSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y + K G RLDY ++S++LK + +I D++GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADILIDIQGSDHAPIILEL 246
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| exodeoxyribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 272
Score = 168 bits (425), Expect = 2e-38, Method: Composition-based stats.
Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 39/306 (12%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
P + SWNVNG+RA + + F I ++ D+++ +QE + ++
Sbjct: 2 PQTYTFASWNVNGLRAVLKKDPSFIQI----------AQELDVDILALQETKLQEGQVDI 51
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH W R+GY+G AV S+ +P+RV ++ ++ G +
Sbjct: 52 DLPGYHQTWSYAERKGYSGTAVFSRQEPLRV-----LRADALLPYAGGGEAA-------- 98
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
+ A A+ +GRV +E+++F+ V+VY P A+ +L+ + V++ W+ R
Sbjct: 99 ----------VLVAQAA--TEGRVCALEFDKFWFVDVYTPNAQNELARIDVRMAWDDAYR 146
Query: 912 GHLKSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
G L +L KPVV GD NVAH ID+ P +N G +GF+ +ER F+ L+ GF D
Sbjct: 147 GFLNALERETGKPVVTCGDFNVAHEEIDLKNPKSNRGNAGFSDEERGKFTELLNAGFTDT 206
Query: 970 HRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
R P+ +Y++W Y ++ GWR+DYFL+S + +++ D I GD+ GSDH P
Sbjct: 207 WRAANPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDSIAANVRDTGIRGDIFGSDHCPV 266
Query: 1028 ILYLNL 1033
L L L
Sbjct: 267 TLTLEL 272
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 251
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 145/299 (48%), Gaps = 54/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH-DLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + GF QH ++ CIQE + ++
Sbjct: 3 KLISWNVNGLRACVE-------------KGFVESMQHLSADIICIQESKLQAGQIDLDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ SK +P+RVT+G +M P
Sbjct: 50 GYCQYWNYARKKGYSGTAIFSKIEPLRVTYGMNM-------------------------P 84
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
H + +GR++T E+ +YL VY P +++ L L + W +L
Sbjct: 85 DHDQ-------------EGRLITAEFPDYYLCTVYTPNSQDGLKRLVYRQSWERDFLTYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L +KPV++ GDLNVAH ID+ P N GFT +ER F LD GF+D R+ Y
Sbjct: 132 QELRRVKPVIICGDLNVAHREIDLKNPAANRKNPGFTDEERAEFQTLLDAGFVDTFRYFY 191
Query: 975 PNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
P Y++W Y ++ S+ GWR+DYFL+S +L L IH ++ GSDH P L L
Sbjct: 192 PEKPEEYSWWSYRFNARSRNAGWRIDYFLVSNELTDRLQSASIHQEIFGSDHCPVELIL 250
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC 3548]
Length = 254
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 151/296 (51%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + +KD + D + FCIQE + +L
Sbjct: 2 KFISWNVNGLRA------------VVKKDFEAEFEALDADFFCIQETKMQENQLSLDLPN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G + +K +P+ V +G ++
Sbjct: 50 YHQYYNYAEQKGYSGTGIFTKHEPLSVHYGINV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PEL +GR +T+EY+ F+LV Y P + +L L ++ W+ + +L
Sbjct: 83 -PELD----------HEGRTITLEYKSFFLVTCYTPNSGHELKRLDFRMQWDPAFQSYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV++ GDLNVAH+ ID+ P +N +GFT +ER F+ LD GF+D +R+ YP
Sbjct: 132 KLNKRKPVIICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENFTTLLDSGFIDTYRYFYP 191
Query: 976 NHR-IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ + Y++W Y + ++ GWR+DYFL SK L +SD I +V GSDH P +L
Sbjct: 192 DKKEKYSWWSYRTKAREVNSGWRIDYFLASKSLAPRISDANILTNVMGSDHCPVVL 247
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K+ F+ + V QE + + L G
Sbjct: 2 KIVSWNVNGIRA------------ALKKNLIDFIENNMFEVIMFQETKGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP+ V G +K F+
Sbjct: 50 YEVISFPARRKGYSGVMTLTKIKPINVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E + FY++N Y P A ++L L KL +N+ + +
Sbjct: 87 ---------------DEGRTVTLELKDFYVINAYFPRAGDNLERLDFKLKFNNEIENFVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GD N+AH +ID A ++ G T QER++FS+FL LGF+D R+L+P
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGA--FSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y + K G RLDY ++S++LK + +I D++GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADILIDIQGSDHAPIILEL 246
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 140/268 (52%), Gaps = 41/268 (15%)
Query: 768 FMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFS 827
FM+ + FCIQE + ++ GY ++W ++GY+G A+ +K +P+ VT+G
Sbjct: 17 FMKLMQI-FFCIQESKLQEGQIDLPLPGYFSYWNYAKKKGYSGTAIFTKKEPLNVTYGI- 74
Query: 828 MKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVN 887
G EH +GRV+T+EY FY+V
Sbjct: 75 --------------GIEEHDK-----------------------EGRVITLEYPDFYMVT 97
Query: 888 VYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK 947
Y P ++ +L+ L ++ W R +LK L+ KPV+L GDLNVAH ID+ P TN
Sbjct: 98 CYTPNSQNELARLPYRMQWEDDFRAYLKRLDGSKPVILCGDLNVAHEEIDLKNPKTNRKN 157
Query: 948 SGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQ 1005
+GF+ +ER + LD GF D R+ YP+ +IY++W Y R K GWR+DYF+ SK+
Sbjct: 158 AGFSDEEREKMTKLLDAGFTDTFRYFYPDTEQIYSWWSYRFRAREKNAGWRIDYFITSKR 217
Query: 1006 LKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ L+ +IH DV GSDH P L ++L
Sbjct: 218 MNDKLTGAKIHTDVFGSDHCPVELDIDL 245
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ +WNVNG+RA +NK F M + D ++ IQE + E+ G
Sbjct: 2 KLVTWNVNGLRA--CMNKGFKES----------MEKLDADIISIQETKMQREQASFDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ S+ KP+ VT+G G EH +
Sbjct: 50 YYEYWNSAVKKGYSGTAIFSRIKPLSVTYGL---------------GIEEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EY+ FYLVNVY P ++ +L+ LS ++ W + + +
Sbjct: 89 -----------------GRVITAEYDDFYLVNVYTPNSQRELARLSYRMAWEDAFQAYCE 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ K ++ GD+NVAH ID+ P +N +GF+ +ER FL GF+D R LYP
Sbjct: 132 DLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ YT+W Y + + GWR+DYFL+S+ + + D+ I ++ GSDH P +L
Sbjct: 192 DREGAYTWWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGSDHCPVVL 247
>gi|242054695|ref|XP_002456493.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
gi|241928468|gb|EES01613.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
Length = 511
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 168/349 (48%), Gaps = 80/349 (22%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ +L HK+ Q + P+N KI SWNVNG++A
Sbjct: 214 DDSEPWTVLVHKKPQAGWIPYNPKTMRPPPLSKDTRALKIMSWNVNGLKA---------- 263
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCPLEKLPECP-----EGYHAFWFPGT--RQG 807
L + GFS ++ D +V C+QE + EK E +GY +F + + G
Sbjct: 264 --LLKSRGFSVQQLAQREDFDVLCLQETKMQ-EKDVEVIKDTLLDGYTNSFFTCSVSKLG 320
Query: 808 YAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADA 867
Y+G A++S+ KP+ + +G + P H
Sbjct: 321 YSGTAIISRVKPLSIKYGLGI-------------------------PDHD---------- 345
Query: 868 SGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLA 926
+GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L
Sbjct: 346 ---TEGRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILT 402
Query: 927 GDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPY 985
GDLN AH ID+ P N +GFT +ER F +NFL GF+D R +P+ Y+YW Y
Sbjct: 403 GDLNCAHQEIDIHDPAGNRKSAGFTNEERESFETNFLSKGFVDTFRKQHPSVVAYSYWGY 462
Query: 986 YDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K KGWRLDYFL+S+ + + D I D+ SDH+P L L L
Sbjct: 463 RHNARKTNKGWRLDYFLVSESIAEKVHDSYILPDISASDHSPLGLVLKL 511
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 52/296 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ +WNVNG+RA +NK F M + D ++ IQE + E+ G
Sbjct: 9 KLVTWNVNGLRA--CMNKGFKES----------MEKLDADIISIQETKMQREQASFDFPG 56
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ S+ KP+ VT+G G EH +
Sbjct: 57 YYEYWNSAVKKGYSGTAIFSRIKPLSVTYGL---------------GIEEHDQE------ 95
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T EY+ FYLVNVY P ++ +L+ LS ++ W + + +
Sbjct: 96 -----------------GRVITAEYDDFYLVNVYTPNSQRELARLSYRMAWEDAFQAYCE 138
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ K ++ GD+NVAH ID+ P +N +GF+ +ER FL GF+D R LYP
Sbjct: 139 DLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYP 198
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+ YT+W Y + + GWR+DYFL+S+ + + D+ I ++ GSDH P +L
Sbjct: 199 DREGAYTWWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGSDHCPVVL 254
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 150/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K+ F+ + V QE + + L G
Sbjct: 2 KIVSWNVNGIRA------------ALKKNLIDFIENNMFEVIMFQETKGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP+ V G +K F+
Sbjct: 50 YEVISFPAKRKGYSGVMTLTKIKPINVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E + FY++N Y P A ++L L KL +N+ + +
Sbjct: 87 ---------------DEGRTVTLELKDFYVINAYFPRAGDNLERLDFKLKFNNEIENFVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+L GD N+AH +ID A ++ G T QER++FS+FL LGF+D R+L+P
Sbjct: 132 KLRRAKPVILCGDFNIAHQNIDGA--FSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y + K G RLDY ++S++LK + +I D++GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADILIDIQGSDHAPIILEL 246
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 148/293 (50%), Gaps = 51/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA +K SF + ++F +QEI+ ++ +G
Sbjct: 2 KLISWNVNGLRA------------CIRKGFLSFFEEAGADLFAVQEIKLQEGQVDLDLQG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G AV +K +P+RV F VG NE
Sbjct: 50 YRQYWNYAEKKGYSGTAVFTKVEPLRV---FRNGVG------------NERQQS------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E+ F+LVNVY P ++ DL+ L +L W +L+
Sbjct: 89 ----------------EGRILTLEFASFFLVNVYTPNSQRDLARLHERLQWEDAFYAYLQ 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GD+NVAH ID+ +N G SGFT +ER + +D +R+ YP
Sbjct: 133 ELENEKPVIVCGDMNVAHEEIDLRNAKSNRGNSGFTTEERAKMTRLQSEWLIDSYRYYYP 192
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y + GWR+DYFL+S +LKS ++D+ I+ DV GSDH P
Sbjct: 193 DQEGAYTWWSYMKTVRERNIGWRIDYFLVSDKLKSAMNDVSIYSDVLGSDHCP 245
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 151/297 (50%), Gaps = 53/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNGIRA +K+ F+ + V QE + + L G
Sbjct: 2 KIVSWNVNGIRA------------ALKKNLIDFIENNMFEVIMFQETKGDIVPLDFIMMG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y FP R+GY+GV L+K KP+ V G +K F+
Sbjct: 50 YEVISFPAKRKGYSGVMTLTKLKPINVIKGLQIK--------EFD--------------- 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
D+GR +T+E + FY++N Y P A ++L L KL +N+ + +
Sbjct: 87 ---------------DEGRTVTLELKDFYVINAYFPRAGDNLERLDFKLKFNNEIENFVL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV+L GD N+AH +ID A ++ G T QER++FS+FL LGF+D R+L+P
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGA--FSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHP 189
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
N R Y++W Y + K G RLDY ++S++LK + +I D++GSDHAP IL L
Sbjct: 190 NVRKYSWWSYMGKAREKNLGLRLDYCIVSEELKDRIKMADILIDIQGSDHAPIILEL 246
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 148/299 (49%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + F + F D ++F IQ+ R ++ G
Sbjct: 16 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFAIQDTRVEANEVQIDLPG 63
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GYAG AV +K KP+ V +GF +
Sbjct: 64 YYQYWNYAKRKGYAGTAVFTKEKPITVANGFGV--------------------------- 96
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE+ +GR +T+E+ FY ++V P + E L L + LW R ++
Sbjct: 97 -PEVDG----------EGRSITLEFPNFYFIDVQVPFSGEKLQRLDFRELWAQTFRNYVT 145
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GD++VAH ID+A P N +GFT ER FS L+ GF+D R+ +P
Sbjct: 146 KLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSELLNAGFIDTFRYFHP 205
Query: 976 NHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YTYW Y D +K GWRLDYFL+S L+ + + +I ++ GSDH P L L++
Sbjct: 206 DEAKYTYWSYREDARAKNIGWRLDYFLVSHNLEDKIINTKILNNIMGSDHCPIELDLDI 264
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 151/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E F++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDFFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEILGSDHCP 244
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 144/300 (48%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F +F Q D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--VMKKNFMDVFTQL----------DADFFCLQETKLQAGQIEMDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K V +G G EH
Sbjct: 50 YTQYWNYAVKKGYSGTAIFAKEPADNVFYGI---------------GKEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY QFYLV Y P ++ +L L ++ W +L
Sbjct: 88 ----------------EGRVITLEYPQFYLVTCYTPNSQNELKRLDYRMEWEDDFVAYLD 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + +PV++ GDLNVAH ID+ TN +GFT +ER F+ LD G+ D RH YP
Sbjct: 132 ELKKDRPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTNEERAKFTALLDHGYTDTFRHFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y ++ GWR+DYF++S L SHL+ IH D+ GSDH P L + L
Sbjct: 192 ELTGAYSWWSYRFNARKNNAGWRIDYFIVSNDLTSHLTSASIHADILGSDHCPVELQVTL 251
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 150/297 (50%), Gaps = 55/297 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
K+ SWNVNGIRA +KD + D +V C+QE + E++ E C
Sbjct: 1 MKLVSWNVNGIRA------------AVKKDFLQSLAAMDCDVLCLQETKAQDEQVIEALC 48
Query: 793 P-EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH F ++GY+G +V+++ +P+ VT + G +EH D E
Sbjct: 49 DLHGYHIFTNSAVKKGYSGTSVITRVEPIDVTK---------------DIGISEH--DQE 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ E+ FYLV VY P + +L L + W++
Sbjct: 92 ---------------------GRVLCAEFSDFYLVTVYTPNSGSELKRLGYRGQWDADFL 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVH 970
++K+L KPVV+ GDLN AH +D+A P N KS G+T QE + N + GF+D
Sbjct: 131 TYIKALEAKKPVVICGDLNAAHKDLDLARPKPNYNKSAGYTQQEIDGIDNLIAAGFIDSF 190
Query: 971 RHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RH++P+ Y++W Y + GWR+DYFL+S L +++SD EI+ D+ GSDH P
Sbjct: 191 RHVHPDTVKYSWWSYRAGARERNVGWRIDYFLVSSALAANISDAEIYDDIHGSDHCP 247
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
Length = 272
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F S F D +VFC+QE + +
Sbjct: 4 KLISWNVNGLRA--VLGKTFLSDF----------HALDADVFCLQETKLQEGQAELSLPD 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ SK +P+ V++G + P
Sbjct: 52 YHQYWNYAEKKGYSGTALFSKEEPLSVSYGIGI-------------------------PE 86
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H +GRV++ E+ Y++ VY P ++ +L LS ++ W R ++
Sbjct: 87 HDR-------------EGRVISAEFPDCYILTVYVPNSQNELQRLSYRMEWEDAFREYIL 133
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL E KPV+ GDLNVAH ID+ P +N +GFT ER FS LD G+LD R L+P
Sbjct: 134 SLEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDERAKFSRLLDCGYLDSFRFLHP 193
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R Y++W Y + + GWR+DYF++S++L+ + IH ++ GSDH P
Sbjct: 194 EERDAYSWWSYRTKARERNVGWRIDYFVVSEKLRERIRGASIHPEIMGSDHCP 246
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 167 bits (423), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 143/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F+ +F D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA--IVKKNFSEVF----------EALDADFFCLQETKLQEGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K + V +G G EH ++
Sbjct: 50 YHQYWNYAEKKGYSGTAIFAKEPALSVRYGL---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY +F+L+ Y P ++ +L L ++ W +L
Sbjct: 89 -----------------GRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + K V+L GDLNVAH +ID+ TN +GFT +ER FS L GF D R+ YP
Sbjct: 132 ELKQQKSVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLLAAGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y ++ GWR+DYF++S L L D +IH D+ GSDH P
Sbjct: 192 DAEGIYSWWSYRFNARKNNAGWRIDYFVVSDNLNERLLDAKIHTDIIGSDHCP 244
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 143/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V F F ++ D + FCIQE + +L G
Sbjct: 2 KFISWNVNGLRA--AVKHDFAETF----------KKLDADFFCIQETKMQEGQLELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ +K P+ VT+G +++ FN
Sbjct: 50 YQQYFNYAERKGYSGTAIFTKHAPLDVTYG--------INSDEFNH-------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR +T+EY FYLV Y P + L L ++ WN +L
Sbjct: 88 ----------------EGRAITLEYPDFYLVTSYVPNSGAGLKRLDFRMGWNKAFYQYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH ID+ P +N +GFT +ER F+N L GF+D RH YP
Sbjct: 132 ELDAKKPVILCGDLNVAHKEIDLKNPQSNHHNAGFTDEERQDFTNLLKAGFMDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + + GWR+DYF+ S +L + D +I DV GSDH P
Sbjct: 192 DQTDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADEIEDSKILTDVFGSDHCP 244
>gi|66910408|gb|AAH97053.1| Apex1 protein [Danio rerio]
gi|197246969|gb|AAI64240.1| Apex1 protein [Danio rerio]
Length = 296
Score = 167 bits (422), Expect = 4e-38, Method: Composition-based stats.
Identities = 112/324 (34%), Positives = 154/324 (47%), Gaps = 67/324 (20%)
Query: 711 PIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMR 770
PI+ + DP L K D N KI SWNV+G+RAW + K+G ++R
Sbjct: 35 PIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDWVR 78
Query: 771 QHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMK 829
+ + + + +PE P H +W ++GY+GVA+L KT+P+ VT+G
Sbjct: 79 KE-------KALPADITGMPEYP---HKYWAGSEDKEGYSGVAMLCKTEPLNVTYGI--- 125
Query: 830 VGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889
G EH + GRV+T E+ F+LV Y
Sbjct: 126 ------------GKEEHDKE-----------------------GRVITAEFPDFFLVTAY 150
Query: 890 APAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949
P A L L + W+ R +L L+ KP+VL GDLNVAH ID+ P N +G
Sbjct: 151 VPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG 210
Query: 950 FTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLK 1007
FT +ER F+ L+ GF D R LYP+ YT+W Y + SK GWRLDYF++S L
Sbjct: 211 FTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 270
Query: 1008 SHLSDLEIHGDVEGSDHAPQILYL 1031
L D +I GSDH P L+L
Sbjct: 271 PGLCDSKIRNTAMGSDHCPITLFL 294
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 146/300 (48%), Gaps = 51/300 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + F + F D +VF +QE + + PE
Sbjct: 1 MKLISWNVNGLRA--CLTHDFAASFAAL----------DADVFSVQETKMQPGQADFAPE 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY + + ++GY+G A KT P+ VT G +G H H
Sbjct: 49 GYTEYTYSAEKKGYSGTACWCKTVPLSVTTG----IGIEEHDH----------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+EY + YLVN Y P +++ L L ++ W R +L
Sbjct: 88 -----------------EGRVLTLEYPESYLVNCYTPNSQDGLKRLDYRMTWEDAFRAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPV+L GDLNVAH ID+ TN +GFT QER + L +GF D R ++
Sbjct: 131 LELDAKKPVILCGDLNVAHQEIDIKNAKTNRMSAGFTDQERAKMTELLAVGFTDSFRAIH 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
P+ Y++W Y + K GWR+DYF++S ++ + EIH +V GSDH P L ++L
Sbjct: 191 PDEVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKIKAAEIHNEVFGSDHCPVELDIDL 250
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 167 bits (422), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F IF Q D + FC+QE + +++ G
Sbjct: 2 KLISWNVNGLRA--VVKKGFIDIF----------NQLDADFFCLQETKLQADQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P V +G G EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKHEPDDVFYGL---------------GKEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+ Y +Y+V Y P ++ +L L ++ W +L
Sbjct: 88 ----------------EGRVITLSYPDYYVVTCYTPNSQNELKRLDYRMTWEEDFLAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH +ID+ TN +GFT +ER F+ FL+ G++D R+ YP
Sbjct: 132 QLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKFTEFLENGYIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y ++ + GWR+DYF++S++L+ L I +V GSDH P L +NL
Sbjct: 192 ELEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAILNEVVGSDHCPVELQINL 251
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F F Q D + FC+QE + ++ +G
Sbjct: 19 KFISWNVNGLRACRE--KGFEESFAQL----------DADCFCLQETKLQEGQIDIAFDG 66
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G + ++ KP+ V +G ++ H H
Sbjct: 67 YESYWNYAEKKGYSGTCIFTRIKPLSVRYGLGIEE----HDH------------------ 104
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E+E YL+ VY P +++ L L ++ W+ R +++
Sbjct: 105 ----------------EGRVITLEFEDLYLLTVYTPNSQDGLRRLDYRMTWDDDFRAYVQ 148
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPVV+ GDLNVAH ID+ P TN +GFT +ER FS L+ GF D +R P
Sbjct: 149 QLDAHKPVVICGDLNVAHQEIDLKNPKTNRKNAGFTDEERQKFSQLLEAGFTDTYRFFNP 208
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + K GWR+DYF+ S+ L L +IH ++ GSDH P
Sbjct: 209 DLTDSYSWWSYRFKAREKNAGWRIDYFVTSQSLNDRLVSADIHQEIFGSDHCP 261
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 143/297 (48%), Gaps = 53/297 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLEKLPECPEGYH 797
+WNVNGIRA + + + + F + + F +QE R P E + P Y+
Sbjct: 32 TWNVNGIRA------------ILKNNFYEFFNAANADFFSVQETRVSPGEVKLDLPSDYY 79
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+W R GYAG AV +K +P++V G G+D + P
Sbjct: 80 QYWNDAERPGYAGTAVFTKHQPLKVMLGLD-------------------GNDQD-----P 115
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
E GR +T+EY FYLVNVYAPAA E+L L+ K W+ L + L
Sbjct: 116 E--------------GRAITLEYPNFYLVNVYAPAAGEELQRLTFKEEWDQKLITFVDKL 161
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPV++ GDLN+AH ID+ P + +GFT ER + LD GF D++R +P+
Sbjct: 162 KATKPVIINGDLNIAHEPIDIYAPEEHRHAAGFTDAERQQMTQLLDSGFTDIYRATHPDE 221
Query: 978 -RIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y D + GWRLDYF+IS L + I V GSDH P L LN
Sbjct: 222 PNKYTWWSYRDHARRDNHGWRLDYFIISNNLVKDVKITTIMDTVSGSDHCPLQLILN 278
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 143/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA K F F R D + FC+QE + +L EG
Sbjct: 11 KFISWNVNGLRACD--GKGFRDAF----------RNLDADFFCLQETKMQAGQLDIDFEG 58
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++W ++GY+G A+ +K P+ VT+G +G H H
Sbjct: 59 YESYWNYAEKKGYSGTAIFTKHHPLNVTYG----LGHEEHDH------------------ 96
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E + F+L+ VY P ++++L L ++ W R +L
Sbjct: 97 ----------------EGRVITLEMDNFFLITVYTPNSQDELRRLDYRMTWEDAFREYLL 140
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ KPV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF D R P
Sbjct: 141 ELNKKKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLNAGFTDTFRFFNP 200
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y R K GWR+DYFL+S L L IH ++ GSDH P
Sbjct: 201 DLTGAYSWWSYRFRAREKNAGWRIDYFLVSNCLNDKLVSASIHNEIFGSDHCP 253
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 166 bits (421), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 150/293 (51%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++ EG
Sbjct: 2 KLISWNVNGLRA--CVKKGFLDYF----------KSEDADIFCLQETKLQEGQIDLDLEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G +M EH
Sbjct: 50 YFQYWNYAEKKGYSGTAIFTKKEPLNVYYGINM----------------EH--------- 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+E ++V VY P ++ +L+ L ++ W R +L
Sbjct: 85 HDK-------------EGRVITLEFEDLFMVTVYTPNSQSELARLEYRMEWEDDFRNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ K VV+ GDLNVAH ID+ P TN +GFT +ER+ FS L GF+D R+ P
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y ++ GWR+DYFL+S L+ + + I ++ GSDH P
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILGSDHCP 244
>gi|332687227|ref|YP_004457001.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
gi|332371236|dbj|BAK22192.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
Length = 254
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F +F + D + FC+QE + ++ G
Sbjct: 2 KCISWNVNGLRA--IVKKNFIYVF----------NELDADFFCVQETKLQDGQIDLELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+GVAV +K +V +G +M+ EH +
Sbjct: 50 YHQYWDYAIKKGYSGVAVFAKEAAQKVYYGLNME---------------EHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYLVN Y P ++ +L L+ ++ W + R +L
Sbjct: 89 -----------------GRLLTLEYPNFYLVNCYTPNSQPELKRLAYRMTWENAFRDYLI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L K V+L GDLNVAH ID+ TN +GF+ +ER + LD GF+D +R+ YP
Sbjct: 132 KLKSKKQVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKMTKLLDNGFIDTYRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ +Y++W Y ++ GWR+DYF++S LK L + I+ ++ GSDH P + L+L
Sbjct: 192 DKEGVYSWWSYRFNARKNNAGWRIDYFIVSDNLKPTLKEATIYTEITGSDHCPVGVELDL 251
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 146/293 (49%), Gaps = 53/293 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA K+GF F+ + ++ CIQE + ++ +
Sbjct: 2 KMISWNVNGIRA-------------CLKNGFMDFLERESPDIMCIQETKVQSGQVQLGLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K KP V G + EH +
Sbjct: 49 GYFQYWNYAEKKGYSGTAIFTKIKPNNVILGIK---------------NTEHDGE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E++++YL+NVY P ++ L+ L + W+ ++
Sbjct: 89 ------------------GRVLTLEFDKYYLINVYTPNSQRGLTRLEYRQKWDQDFLNYI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L KPV+ GDLNVAH ID+ P N+ +GFT +ER F N +D GF+D R
Sbjct: 131 KTLENEKPVIFCGDLNVAHKEIDLKNPKNNVKNAGFTPEERIGFDNIVDSGFIDTFREFN 190
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y ++ SK GWR+DYF ISK L+ +L D I +V GSDH P
Sbjct: 191 KEPDNYSWWSYRFNARSKNIGWRIDYFCISKILRDNLKDAFIMSEVMGSDHCP 243
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 145/286 (50%), Gaps = 51/286 (17%)
Query: 742 VNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWF 801
+NG+RA V K F F + D + FC+QE + +L EGY ++W
Sbjct: 1 MNGLRA--CVGKGFEESF----------KALDADFFCLQETKMQEGQLNLQFEGYDSYWN 48
Query: 802 PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTT 861
++GY+G A+ +K KP+ VT+G ++ H H
Sbjct: 49 YAEKKGYSGTAIYTKHKPLNVTYGLGIEE----HDH------------------------ 80
Query: 862 IQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIK 921
+GRV+T+E E FYL+ VY P ++++L L ++ W +++ L+ K
Sbjct: 81 ----------EGRVITLEMEDFYLITVYTPNSQDELRRLDYRMTWEDDFLKYIQGLDAKK 130
Query: 922 PVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYT 981
PV++ GDLNVAH ID+ P TN +GFT +ER + L+ GF D R+ YP Y+
Sbjct: 131 PVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDSFRYKYPEQVTYS 190
Query: 982 YWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+W Y + K GWR+DYFLIS +L+ L D +IH +V GSDH P
Sbjct: 191 WWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTEVYGSDHCP 236
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F F ++ D ++FC+QE + ++ G
Sbjct: 5 KLISWNVNGLRA--VMGKNFMEDF----------KRLDADMFCLQETKLQEGQIDLDLPG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH +
Sbjct: 53 YFQYWNYAVKKGYSGTAIFTKEEPLSVQYGI---------------GVEEHDQE------ 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY +FYL+ VY P ++ +L L ++ + ++
Sbjct: 92 -----------------GRVITLEYPEFYLITVYVPNSQGELKRLPYRMKFEDAFLNYIL 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV+ GDLNVAH ID+ P +N +GF+ +ER FS LD G+LD RH YP
Sbjct: 135 TLEKKKPVIYCGDLNVAHEEIDLKNPDSNHMNAGFSDEERAKFSRVLDSGYLDSFRHFYP 194
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N Y++W Y + + GWR+DYF++SKQL+ L IH +V GSDH P + L+L
Sbjct: 195 NKEEEYSWWSYRTKARDRNVGWRIDYFVVSKQLEKKLLSASIHQEVMGSDHCPVEITLDL 254
>gi|402835045|ref|ZP_10883630.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
gi|402276400|gb|EJU25510.1| exodeoxyribonuclease III [Selenomonas sp. CM52]
Length = 250
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 145/296 (48%), Gaps = 52/296 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F F + D +VF +QE + E+ GY
Sbjct: 5 SWNVNGLRA--CLGKGFMQSF----------KALDADVFGVQETKMQPEQAILELTGYKQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G AV S+ +P+ V++G ++ H H
Sbjct: 53 YWNSAEKKGYSGTAVFSRIEPLSVSYGLGIEE----HDH--------------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+ +E++ Y V VY P ++ L L+ ++ W R +L +L+
Sbjct: 88 -------------EGRVIALEFDDLYFVTVYTPNSQRGLERLAYRMTWEEAFRDYLLTLD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KPVV+ GDLNVAH ID+ P TN +GFT +ER + L GF D R LYP+
Sbjct: 135 AKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKMTELLQAGFTDTFRALYPDKT 194
Query: 979 -IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
IYT+W Y + + GWR+DYFL+S +L + + IH +V GSDH P L L
Sbjct: 195 GIYTWWSYLRKARETNAGWRIDYFLVSDRLAPKIKEATIHNEVFGSDHCPVGLVLG 250
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 166 bits (419), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 168/342 (49%), Gaps = 72/342 (21%)
Query: 717 DPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFL 760
+P+ +L HK+ Q + +N K+ SWNVNG+RA ++ F+++ L
Sbjct: 213 EPWTVLAHKKPQKGWIAYNPRTMRPPSLAQDTKFVKLLSWNVNGLRALLKLEG-FSALQL 271
Query: 761 QQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE----GY-HAFWFPG-TRQGYAGVAVL 814
Q++ D +V C+QE + + + E + GY ++FW ++ GY+G A++
Sbjct: 272 AQRE--------DFDVLCLQETKLQEKDIEEIKQRLIDGYANSFWTCSVSKLGYSGTAII 323
Query: 815 SKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR 874
S+ KP+ V +G + P H +GR
Sbjct: 324 SRIKPLSVRYGLGI-------------------------PDHDS-------------EGR 345
Query: 875 VMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAH 933
++T E++ FYL+ Y P + + L LS ++ W+ L +LK L + KPV+L GDLN AH
Sbjct: 346 LVTAEFDTFYLICGYVPNSGDGLKRLSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAH 405
Query: 934 NHIDVALPLTNLGKSGFTIQERNYFS-NFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM 992
ID+ P N +GFT +ER F+ NFL GF+D R +P YTYW Y K
Sbjct: 406 EEIDIYNPAGNKRSAGFTDEERKSFAKNFLSRGFVDTFRRQHPGVIGYTYWGYRHGGRKF 465
Query: 993 -KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+GWRLDYFL+S+ + + D I DV GSDH P L + L
Sbjct: 466 NRGWRLDYFLVSESIADKVHDSYILPDVTGSDHCPIGLVVKL 507
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 166 bits (419), Expect = 9e-38, Method: Composition-based stats.
Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA T F + F+ + D ++F +QE + + P+G
Sbjct: 2 KLISWNVNGLRA------CLTHGF---AESFAAL---DADIFSVQETKMQPGQADFAPDG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y + + ++GY+G A + +P+ VT G +G H H
Sbjct: 50 YTEYTYSAEKKGYSGTACWCREQPLSVTTG----IGIEQHDH------------------ 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+EY F+LVN Y P +++ L L ++ W R +L
Sbjct: 88 ----------------EGRVLTLEYPGFWLVNCYTPNSQDGLKRLDYRMEWEDAFRAYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L+ KPV+L GDLNVAH ID+ TN +GFT QER + LD GF D R L+P
Sbjct: 132 ALDAKKPVILCGDLNVAHREIDIKNDKTNHMSAGFTDQERGKMTELLDAGFADSFRVLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + K GWR+DYF++S+++ + EIH ++ GSDH P L ++L
Sbjct: 192 DEVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADKIRAAEIHNEIFGSDHCPVELDIDL 250
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 153/300 (51%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA K F F + D ++FCIQE + ++ G
Sbjct: 5 KMISWNVNGLRA--AAGKTF----------FDAFHELDADIFCIQESKLQEGQIELDLPG 52
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+GVA+ +K KPV V++G + P
Sbjct: 53 YYDYWNYAEKKGYSGVAMFTKEKPVNVSYGLGI-------------------------PE 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GRV+T+E+ +Y++ Y P ++ +L L ++ W ++K
Sbjct: 88 HDK-------------EGRVITLEFPDYYVLTCYTPNSQNELKRLDYRMEWEDAFFAYIK 134
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KP++ GDLNVAH ID+ P TN +GFT +ER + L GF+D R+L+P
Sbjct: 135 GLDQKKPLIYCGDLNVAHEEIDLKNPSTNRRNAGFTDEEREKMTRVLTNGFVDSFRYLHP 194
Query: 976 NHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + + GWR+DYF++S++LK + IH ++ GSDH P L ++L
Sbjct: 195 EEKDAYSWWSYRMKARERNVGWRIDYFIVSERLKDRIQGASIHSEILGSDHCPVELKIDL 254
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 166 bits (419), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 147/299 (49%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + F + F D ++F IQ+ R ++ G
Sbjct: 2 KFMSWNVNGLRA--ALRHGFVNTFTDL----------DADIFAIQDTRVEANEVQIDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GYAG AV +K KP+ V +GF +
Sbjct: 50 YYQYWNYAKRKGYAGTAVFTKEKPITVANGFGV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE+ +GR +T+E+ FY ++V P + E L L + LW R ++
Sbjct: 83 -PEVDG----------EGRSITLEFPNFYFIDVQVPFSGEKLQRLDFRELWAQTFRNYVT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L + KPV++ GD++VAH ID+A P N +GFT ER FS L+ GF+D R+ +P
Sbjct: 132 KLMQYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSELLNAGFIDTFRYFHP 191
Query: 976 NHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ YTYW Y D +K GWRLDYFL S L+ + + +I ++ GSDH P L L++
Sbjct: 192 DEAKYTYWSYREDARAKNIGWRLDYFLASHNLEDKMINTKILNNIMGSDHCPIELDLDI 250
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 145/296 (48%), Gaps = 52/296 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F F + D +VF +QE + E+ GY
Sbjct: 5 SWNVNGLRA--CLGKGFMQSF----------KALDADVFGVQETKMQPEQAILELTGYKQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G AV S+ +P+ V++G ++ H H
Sbjct: 53 YWNSAEKKGYSGTAVFSRIEPLSVSYGLGIEE----HDH--------------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+ +E++ Y V VY P ++ L L+ ++ W R +L +L+
Sbjct: 88 -------------EGRVIALEFDDLYFVTVYTPNSQRGLERLAYRMTWEEAFRDYLLALD 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KPVV+ GDLNVAH ID+ P TN +GFT +ER + L GF D R LYP+
Sbjct: 135 AKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKMTELLAAGFTDTFRALYPDKT 194
Query: 979 -IYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
IYT+W Y + + GWR+DYFL+S +L + + IH +V GSDH P L L
Sbjct: 195 GIYTWWSYLRKARETNAGWRIDYFLVSDRLAPKIKEATIHNEVFGSDHCPVGLVLG 250
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F+ +F + D + FCIQE + ++ GYH
Sbjct: 5 SWNVNGLRA--VLKKNFSEVF----------EKLDADFFCIQETKLQEGQVELDLPGYHQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P V++G +H F+
Sbjct: 53 YWNYAERKGYSGTAIFTKHEPQSVSYG--------IHNSEFDH----------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+T+EY FYLV Y+P ++ L L ++ + +L L
Sbjct: 88 -------------EGRVITLEYASFYLVCCYSPNSQPKLKRLDFRMGFEDAFLNYLNDLK 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
E KPV++ GDLNVAH ID+ P TN +GF+ +ER+ + L+ G+LD R +P+
Sbjct: 135 EKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLLENGYLDTFRFFHPDET 194
Query: 979 -IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
IY++W Y ++ GWR+DYF++S+ LK L + EI D+ GSDH P +L
Sbjct: 195 GIYSWWSYRFNARKNNAGWRIDYFIVSESLKDSLENAEILTDIMGSDHCPVLL 247
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 165 bits (418), Expect = 1e-37, Method: Composition-based stats.
Identities = 98/300 (32%), Positives = 150/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F IF Q D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--VVKKGFIDIF----------NQLDADFFCLQETKLQAGQIDFELPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K +P V +G G EH
Sbjct: 50 YHQYWNYAEKKGYSGTAIFTKHEPDEVFYGL---------------GKEEHDQ------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+ Y +Y+V Y P ++ +L L+ ++ W +L
Sbjct: 88 ----------------EGRVITLSYPDYYVVTCYTPNSQNELKRLNYRMTWEEDFLAYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV++ GDLNVAH +ID+ TN +GFT +ER F+ FL+ G++D R+ YP
Sbjct: 132 QLDAEKPVIVCGDLNVAHENIDIKNWKTNRKNAGFTDEERGKFTEFLENGYIDTFRYFYP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y ++ + GWR+DYF++S++L+ L I +V GSDH P L +NL
Sbjct: 192 ELEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAILNEVVGSDHCPVELQINL 251
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 146/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVKLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ ++ R+GY+G A+ +K +P+ VT+G + P
Sbjct: 50 YYQYFNYAERKGYSGTAIFTKHEPLNVTYGMGI-------------------------PE 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H + +GR++T+EY +FYL+ VY P + +L L + W+ R +
Sbjct: 85 HDK-------------EGRIITLEYPKFYLMTVYTPNSGGELKRLDYRQQWDKDFRAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L E KP+V GDLNVAH ID+ TN +GFT +ER F+ L GF+D RHLYP
Sbjct: 132 QLAEKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLKSGFIDTFRHLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N Y++W Y + + GWR+DYF+ S + ++ D +I DV GSDH P
Sbjct: 192 NTVTYSWWSYRFHARANNAGWRIDYFVASSNFQPYVKDAKILTDVMGSDHCP 243
>gi|432328166|ref|YP_007246310.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
gi|432134875|gb|AGB04144.1| exodeoxyribonuclease III [Aciduliprofundum sp. MAR08-339]
Length = 257
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 148/300 (49%), Gaps = 56/300 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP---ECPE 794
SWNVNGIRA ++GF F+ +++ ++ +QEI+ + +P E
Sbjct: 9 SWNVNGIRA-------------AVRNGFLKFLEKYNPDILALQEIKAREDDIPLEVRYYE 55
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY F+ P R+GYAG A+ +K +P V+ G
Sbjct: 56 GYRKFFNPARRKGYAGTALFTKIEPESVSFGI---------------------------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D +GRV+T EYE+FYLVN Y P ++ L+ L K+ ++ + +L
Sbjct: 88 ----------GDERFDSEGRVITAEYERFYLVNAYFPNSQHGLTRLDFKIEFDRKIHAYL 137
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KPVVL GD NVAH ID+A P N +GFT +ER + FL+ G++D R
Sbjct: 138 NELRRSKPVVLCGDFNVAHKEIDLANPKQNEKNAGFTPEERAWMDEFLNDGYVDTFRMFT 197
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YT+W Y ++ ++ GWR+DYF++SK L H+ I DV GSDHAP + L +
Sbjct: 198 KEGGHYTWWTYRFNARARNIGWRVDYFVVSKDLVPHVKKSWIMSDVYGSDHAPIAMILEI 257
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 145/294 (49%), Gaps = 52/294 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNGIRA K ++ D +V C+QE++ E+ E
Sbjct: 1 MKLVSWNVNGIRA------------CMDKGLREYLTACDADVICLQEVKAMEEQAGLEWF 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ Y W ++GY+G A+L++ +P++ +H G +EH +
Sbjct: 49 KDYQVVWNAAQKKGYSGTAILTR-QPIK--------------SHAIGMGIDEHDKE---- 89
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+TVE+ +Y+VNVY P A+ +L+ L +LLW+ R +
Sbjct: 90 -------------------GRVITVEFPDYYVVNVYTPNAQAELARLPYRLLWDDAFRLY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
LK+L + KPV+ GDLNVAHN ID+A P N GF+ QER F L+ GF+D RH
Sbjct: 131 LKNLEQTKPVLACGDLNVAHNEIDIARPKENRFSPGFSDQERASFGKLLESGFVDTFRHF 190
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y + GWR+DY+L S+ LK L I D+ GSDH P
Sbjct: 191 DSRPHQYSWWSYRANARGNNVGWRIDYWLASQGLKDGLKSSIIRPDIHGSDHCP 244
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 146/301 (48%), Gaps = 52/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+K SWNVNG+RA N F++ D + FC+QE + ++
Sbjct: 3 YKFISWNVNGLRAVMGKN------FMEAFDSLG------ADFFCLQETKLQAGQIEMDLP 50
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY +W ++GY+G A+ +K +P+ V++G G +H +
Sbjct: 51 GYKEYWNYAQKKGYSGTAIFTKHEPLSVSYGI---------------GIEQHDT------ 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GRV+T+EY F+LV VY P ++ +L L ++ W R L
Sbjct: 90 -----------------EGRVITLEYADFFLVTVYTPNSQNELKRLDYRMAWEDDFRNFL 132
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
SL KPV++ GD+NVAH ID+ P N +GFT +ER + L GF+D R L
Sbjct: 133 VSLKAKKPVIVCGDMNVAHEEIDIKNPSANRRNAGFTDEERAKMTELLASGFIDTFRTLN 192
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P + Y++W Y + + GWR+DYFL+S +K +SD +IH D+ GSDH P L L
Sbjct: 193 PELKDAYSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIHADILGSDHCPVELELE 252
Query: 1033 L 1033
Sbjct: 253 F 253
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 152/298 (51%), Gaps = 52/298 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K S+NVNG+RA V K F F ++ D + FC+QE + +L G
Sbjct: 2 KCISFNVNGLRA--IVGKNFEEDF----------KKLDADFFCLQETKMQAGQLDLQFNG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y++++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YYSYFNYAERKGYSGTAIYTKHEPINVTYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY++F+ + VY P + +L L ++ W + +L
Sbjct: 89 -----------------GRVITLEYDKFFFITVYTPNSGSELKRLEYRMSWEEDFKNYLL 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
LN+ K +V+ GDLNVAH ID+ P +N +GFT +ER F+ LD GF+D R+ P
Sbjct: 132 ELNKTKGIVVCGDLNVAHTEIDLKNPKSNTKNAGFTQEEREKFTKLLDAGFIDTFRYYNP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y ++ GWR+DYFL+S+ L+ +L IH ++ GSDH P L L
Sbjct: 192 DLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEKYLESAAIHNEIFGSDHCPVELVL 249
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 148/296 (50%), Gaps = 56/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPEC-- 792
K+ SWNVNG+RA + K+GF + + D ++ +QEI+ ++L +
Sbjct: 231 KLISWNVNGLRAVA-------------KNGFLDVLHELDADILALQEIKAHPDQLDDQLR 277
Query: 793 -PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GY +FW ++GYAG AV SK P+RV +G ME
Sbjct: 278 NVSGYQSFWHSAKKKGYAGTAVFSKIPPLRVLYG------------------------ME 313
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
P+ D+GRV+T+EY FYL+N Y+P A+ +L L+ K +N L
Sbjct: 314 ----QPQFD----------DEGRVLTLEYPDFYLINTYSPNAQPELKRLAFKQEFNRTLL 359
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
++ L K VVL GDLNVAH ID+A P N+ GF+ QER + + G++D R
Sbjct: 360 AYMDRLRSEKTVVLCGDLNVAHKEIDLANPKANVKNPGFSEQERAWMDELIAAGYVDTFR 419
Query: 972 HLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W Y ++ +K GWR+DYF++ + + + IHG++ GSDH P
Sbjct: 420 QFNQEAGQYTWWSYRFNARAKNIGWRIDYFIVDGSSRDRVLEAAIHGEITGSDHCP 475
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 143/294 (48%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIR+ + K F+ ++ C+QE + E++
Sbjct: 2 KMISWNVNGIRS------------ILGKGFLDFVGSSCADIICLQETKAHPEQVDLTLND 49
Query: 796 Y-HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y H +W ++GY+G A+ K +P+ G G EH
Sbjct: 50 YPHHYWNSAIKKGYSGTAIFCKVQPIASQLGI---------------GIEEHD------- 87
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
++GRV+T+E+ +YLVNVY P A+ +L+ L ++ W++ +L
Sbjct: 88 ----------------NEGRVITLEFSDYYLVNVYTPNAQRELTRLDYRMKWDADFLNYL 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L KPV+ GDLNVAH ID+A P TN G +GFT QER+ FS L+ GF+D R
Sbjct: 132 KKLESHKPVIFCGDLNVAHKEIDLANPKTNQGNAGFTPQERDGFSKILESGFVDTFRLFN 191
Query: 975 PNHRIYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YT+W Y RP + GWR+DYF S LK+ + IH V GSDH P
Sbjct: 192 NSGGFYTWWSYMAGARPRNI-GWRIDYFCTSYNLKNKVKSSAIHAQVMGSDHCP 244
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 147/301 (48%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+++ SWNVNG+RA + + F + ++ ++++ IQE + ++
Sbjct: 7 YRLASWNVNGLRAVMKKDPNFIDV----------VQSLNVDIIGIQETKLQEGQIALDLP 56
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY W R+GY+G AV SK P++ +HT G + NE
Sbjct: 57 GYTQTWSYAERKGYSGTAVFSKEAPLQT-----------IHTIGCSAADNE--------- 96
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV +E+ F+ VNVY P +K +L+ L ++ W+ R L
Sbjct: 97 ------------------GRVCALEFNDFWFVNVYTPNSKNELARLDERMEWDEAYRSFL 138
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+L+ KPV+ GD N AH ID+ P TN +GF+ +ER F+ L+ GF D R +
Sbjct: 139 HTLDAKKPVITCGDFNCAHEEIDLKNPATNHQNAGFSDEERASFTKLLNTGFTDTFRAAH 198
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y R + GWR+DYFL+S ++K+ +SD IH DV GSDH P L +
Sbjct: 199 PTLTDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIHADVYGSDHCPVGLTIT 258
Query: 1033 L 1033
L
Sbjct: 259 L 259
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 149/299 (49%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F F + D ++F IQE + ++ G
Sbjct: 2 KLISWNVNGLRA--VVKHDFKDTF----------EKLDADIFSIQETKLQEGQIDLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G AV SK +P+ + E+G
Sbjct: 50 YHQYFNYADRKGYSGTAVFSKQEPLNI----------------------------ETGLD 81
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
E +GR +T+EY FYL+N Y P ++ L L ++ +N + H++
Sbjct: 82 DDEFNH----------EGRTITLEYPDFYLINSYTPNSQPKLKRLDFRMGYNDAMWKHMQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPV+L GDLNVAHN ID+ TN GF+ +ERN FS LD GF D R+L+P
Sbjct: 132 TLSKKKPVILCGDLNVAHNEIDIKNDKTNHKNPGFSDEERNKFSELLDSGFTDTFRYLHP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
Y++W Y ++ GWR+DYF+IS + + + +I DV GSDH P L LN+
Sbjct: 192 EEVKYSWWSYRFNARKNNAGWRIDYFVISNNGQDLIQNADILNDVYGSDHCPIQLDLNI 250
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera colitermitum
TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera colitermitum
TAV2]
Length = 259
Score = 164 bits (415), Expect = 3e-37, Method: Composition-based stats.
Identities = 101/294 (34%), Positives = 140/294 (47%), Gaps = 45/294 (15%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--ECP 793
K+ SWNVNG+RA + QK ++ + C+QE +C + E P
Sbjct: 2 KLVSWNVNGVRA------------VLQKGLLDYIAASGADAICLQETKCQPGDVQHVEWP 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY A W ++GY+G A+ + R+ G S + + T G R +EH +
Sbjct: 50 AGYTAHWNAAQKRGYSGTAIFT-----RMGAGSSPALTPLAVTAGIGR--DEHDT----- 97
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+GRV+T E+ FYLVN Y P A+ +L+ L + W++ +
Sbjct: 98 ------------------EGRVLTAEFPDFYLVNAYVPNAQPELARLPYRQRWDADFLAY 139
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L+ L KPVV+ GDLNVAH ID+A P N+G GF+ +ER F FL GFLD R
Sbjct: 140 LRGLETRKPVVMCGDLNVAHEEIDLARPKENVGNPGFSNEERAGFREFLRAGFLDTFREF 199
Query: 974 YPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y K GWR+DYFL S L+ L I V GSDH P
Sbjct: 200 EKGPGHYSWWSYRAGARGKNVGWRIDYFLASASLRPRLKRAWIEPAVMGSDHCP 253
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 164 bits (415), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 58/301 (19%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP----ECP 793
SWNVNGIRA ++GF F+ ++ ++ +QEI+ + +P P
Sbjct: 7 SWNVNGIRA-------------CVRNGFLDFLEKYKPDILALQEIKATEDNVPMEVRYYP 53
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ YH +W P ++GYAG A+ +K +P+ V G G ++ S+
Sbjct: 54 D-YHKYWNPAKKKGYAGTALFTKIEPLNVKFGI---------------GEDKFDSE---- 93
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EYE+FYLVN Y P ++ L+ L K+ ++ + +
Sbjct: 94 -------------------GRVITAEYEKFYLVNAYFPNSQHGLTRLDFKIEFDKLIHSY 134
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L + KPV+L GD NVAH ID+A P N+ +GFT QER + FL G++D R
Sbjct: 135 LNELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDKFLQDGYIDTFRMF 194
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y + + GWR+DYF++S++LK + I +V GSDHAP + L+
Sbjct: 195 TKEGGHYTWWTYRFKARERNIGWRVDYFVVSEELKDKVKSSWILSEVYGSDHAPIAMVLD 254
Query: 1033 L 1033
+
Sbjct: 255 I 255
>gi|342218104|ref|ZP_08710730.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
gi|341590909|gb|EGS34130.1| exodeoxyribonuclease III [Megasphaera sp. UPII 135-E]
Length = 249
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 146/295 (49%), Gaps = 52/295 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F IF + D + FC+QE + ++ GYH
Sbjct: 5 SWNVNGLRA--IMKKGFIDIF----------QTLDADFFCLQETKLQAGQIDLTLPGYHQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P++VT+G +G H H
Sbjct: 53 YWNYADRKGYSGTAIFTKHEPLQVTYG----MGIDAHDH--------------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GR++T+EY Y+V Y P ++ +L+ L ++ W R +L L
Sbjct: 88 -------------EGRLITLEYPDRYVVTCYTPNSQNELARLPYRMQWEDDCRHYLSQLK 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-H 977
E K V+ GDLNVAH ID+ P N +GF+ +ER +N L+ GF D R+ YP+
Sbjct: 135 EQKSVIFCGDLNVAHEEIDLKNPKNNRKNAGFSDEEREKMTNLLNSGFTDTWRYFYPDTA 194
Query: 978 RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+Y++W Y ++ GWR+DYF+ S L S L + I+ D+ GSDH P L L
Sbjct: 195 NVYSWWSYRFNARKNNAGWRIDYFITSDDLNSCLKEAHIYTDIMGSDHCPVGLIL 249
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 52/293 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F+ +F + D + FCIQE + ++ GYH
Sbjct: 5 SWNVNGLRA--VLKKNFSEVF----------EKLDADFFCIQETKLQEGQVELDLPGYHQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P V++G + F+
Sbjct: 53 YWNYAERKGYSGTAIFTKHEPQSVSYG--------IQNSEFDH----------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+T+EY FYLV Y+P ++ L L ++ + +L +L
Sbjct: 88 -------------EGRVITLEYASFYLVCCYSPNSQPKLKRLDFRMGFEDAFLNYLNALK 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
E KPV++ GDLNVAH ID+ P TN +GF+ +ER+ + L+ G+LD R +P+
Sbjct: 135 EKKPVIMCGDLNVAHEEIDLKNPKTNHKNAGFSNEERSCMTRLLENGYLDTFRFFHPDET 194
Query: 979 -IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
IY++W Y ++ GWR+DYF++S+ LK L + EI D+ GSDH P +L
Sbjct: 195 GIYSWWSYRFNARKNNAGWRIDYFIVSESLKDSLENAEILTDIMGSDHCPVLL 247
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 66/310 (21%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQE-------IRCPL 786
N + SWNVNG+RA + +K + ++ D ++ C+QE I+ L
Sbjct: 3 NLSLVSWNVNGLRA------------IIKKGFITSLKSLDPDILCLQETKGQVEDIKTAL 50
Query: 787 EKLPECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
+ LP+ Y A+ ++GY+G A+LSK +P+ +T ++ G E
Sbjct: 51 QLLPD----YKAYVNCSKLKKGYSGTAILSKKEPLDIT---------------YDLGHEE 91
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL 905
H + GRV+T E++ F+LVNVY P + + L+ L +
Sbjct: 92 HDQE-----------------------GRVITAEFDHFFLVNVYTPNSGQGLNRLEYRQA 128
Query: 906 WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDL 964
W+ HL+SL + KPVVL GDLNVAH ID+A N KS G+T QE + F ++L+
Sbjct: 129 WDVIFLNHLRSLEQRKPVVLCGDLNVAHEEIDIARAKQNYNKSAGYTQQEIDGFKSYLEH 188
Query: 965 GFLDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
GF+D RH +P YTYW ++ ++ GWR+DYFL+S L + IH GSD
Sbjct: 189 GFVDTFRHFFPEEVKYTYWNQMFNSRARNVGWRIDYFLVSPALLGQVKTAAIHDQFHGSD 248
Query: 1024 HAP--QILYL 1031
H P +LYL
Sbjct: 249 HCPVELVLYL 258
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 152/301 (50%), Gaps = 58/301 (19%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP----ECP 793
SWNVNGIRA ++GF F+ ++ ++ +QEI+ + +P P
Sbjct: 7 SWNVNGIRA-------------CVRNGFLDFLEKYKPDILALQEIKATEDNIPIEVRYYP 53
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ YH +W P ++GYAG A+ +K +P+ + G G ++ S+
Sbjct: 54 D-YHKYWNPAKKKGYAGTALFTKIEPLNIKFGI---------------GEDKFDSE---- 93
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EYE+FYLVN Y P ++ L+ L K+ ++ + +
Sbjct: 94 -------------------GRVITAEYEKFYLVNAYFPNSQHGLTRLDFKIEFDKLIHSY 134
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L + KPV+L GD NVAH ID+A P N+ +GFT QER + FL G++D R
Sbjct: 135 LNELRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDEFLQDGYIDTFRMF 194
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y + + GWR+DYF++S++LK + I +V GSDHAP + L+
Sbjct: 195 TKEGGHYTWWTYRFKARERNIGWRVDYFVVSEELKDKVKSSWILSEVYGSDHAPIAMVLD 254
Query: 1033 L 1033
+
Sbjct: 255 I 255
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 164 bits (414), Expect = 4e-37, Method: Composition-based stats.
Identities = 99/301 (32%), Positives = 143/301 (47%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--CP 793
K+ SWNVNG+RA + K + + +V C+QEI+ E++ +
Sbjct: 2 KLVSWNVNGLRA------------VLGKGMADAVDALEPDVLCLQEIKARPEQVKDLWIS 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
H W P + GY+GV +LS+ +P+ + G
Sbjct: 50 SWPHQLWNPAEKAGYSGVLILSRVRPLSTSVGIGW------------------------- 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
P H +GRV T+E+E FYLVN Y P ++ +L L + W++ R +
Sbjct: 85 PEHDR-------------EGRVCTMEFEGFYLVNCYTPNSQNELVRLPYREQWDAAFREY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ L E KPVV GDLNVAH ID+A P N +GF+ QER F+ L+ GF D R L
Sbjct: 132 VAGLAETKPVVFCGDLNVAHEEIDIARPKENRFSAGFSDQERAGFTLLLEAGFTDTFRAL 191
Query: 974 YPNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+P + W Y ++ + GWR+DYF +S L S + D IH DV GSDH P L +
Sbjct: 192 HPEEPGWYSWWSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIHPDVTGSDHCPVSLEI 251
Query: 1032 N 1032
+
Sbjct: 252 D 252
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 163 bits (413), Expect = 4e-37, Method: Composition-based stats.
Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + +KD + Q D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA------------VLKKDFMTTFEQFDADFFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G A+ +K +P+ VT+G P
Sbjct: 50 YHQYFNYAEKKGYSGAAIFTKHEPLNVTYGIQQ-------------------------PE 84
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
H +GRV+T+EY QF+L+ Y P ++ L L ++ W + R +++
Sbjct: 85 HDH-------------EGRVITLEYPQFFLITCYTPNSQNQLKRLDYRMTWENAFRAYVQ 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV+ GDLNVAH ID+ TN +GF+ +ER + L GF D R+ YP
Sbjct: 132 QLGTQKPVIFCGDLNVAHEAIDLKNDRTNHKSAGFSDEERVQMTTLLQSGFTDTFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + GWR+DYF+ S +L+ L D +IH ++ GSDH P
Sbjct: 192 DQTDIYSWWSYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTEIYGSDHCP 244
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 140/293 (47%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V F F +Q D + FCIQE + +L G
Sbjct: 2 KFISWNVNGLRA--AVKHDFAETF----------QQLDADFFCIQETKMQEGQLELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G A+ +K P+ VT+G N +H
Sbjct: 50 YQQYFNYAERKGYSGTAIFTKHAPMHVTYGI-------------NSDEFDH--------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR +T+EY FYLV Y P + L L ++ WN +L
Sbjct: 88 ----------------EGRAITLEYPDFYLVTSYVPNSGAGLKRLDFRMGWNKAFYQYLT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+L GDLNVAH I++ P +N +GFT +ER F+ L GF+D RH YP
Sbjct: 132 ELDAKKPVILCGDLNVAHKEIELKNPQSNHHNAGFTDEERQDFTKLLKAGFMDTFRHFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + + GWR+DYF+ S +L + D +I DV GSDH P
Sbjct: 192 DQTDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADQIEDSKILTDVFGSDHCP 244
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 163 bits (413), Expect = 5e-37, Method: Composition-based stats.
Identities = 108/307 (35%), Positives = 142/307 (46%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI WNV+G RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICPWNVDGRRAWIK------------KKGVDWIKEEAPDILCLQETKCSENKLPVELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 110 ELSGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 154
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ Y+ F LV Y P A L L + W+
Sbjct: 155 -----------------------GRVIVAGYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH DV P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEESDVRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ L + D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPAVCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 163 bits (412), Expect = 5e-37, Method: Composition-based stats.
Identities = 102/297 (34%), Positives = 145/297 (48%), Gaps = 57/297 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH-DLNVFCIQEIRCPLEKLPECPE 794
KI SWNVNGIRA Q+ GF QH D + +QE + +++ + E
Sbjct: 2 KIISWNVNGIRA-------------VQEKGFRDSLQHFDADCILLQETKAQDDQVHKALE 48
Query: 795 G---YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
G YH + R+GY+GVA+L++ P+RV H + G EH +
Sbjct: 49 GIDHYHVYCNSAERKGYSGVALLTRNPPLRVVH---------------DMGIAEHDQE-- 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ E+E FYL+NVY P + + L+ L + W++ L
Sbjct: 92 ---------------------GRVLVAEFESFYLLNVYVPNSGDGLARLDYRQTWDAALL 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVH 970
+L+ L KPV+ GD NVAH ID+A P N KS G+T E + FS F + GF+D
Sbjct: 131 AYLQQLQNQKPVIACGDFNVAHQAIDIARPKANYNKSAGYTQTEIDGFSRFTEAGFIDSF 190
Query: 971 RHLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RH +P Y++W Y +K GWR+DY L S+ L + D I ++ GSDH P
Sbjct: 191 RHFHPETVAYSWWSYRAGARAKNIGWRIDYVLTSQALLPRIQDSFILPEIMGSDHCP 247
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 150/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SW+VNG++ S +N F F +Q D + FC+Q R + P
Sbjct: 2 KFISWSVNGLK--SAINHGFVEDFKRQ----------DADFFCLQRTRLDKGEEPFQIPN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP V +G + + F++
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKYKPENVIYGMNNSI--------FDK-------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY FYL++VY P + E L L +L W+ ++
Sbjct: 88 ----------------EGRLITLEYPNFYLIDVYVPVSGEKLQHLDYRLDWDRAFLDYVT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GD++VA+ ID+A P + K+GFT QER+ F LD G D R+L+P
Sbjct: 132 NLQSSKPVIIGGDMSVAYQPIDLAEPTEDHHKAGFTKQERSDFGKLLDAGLTDTFRYLHP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N H YT+W Y YD + GWRLDYFL+S K + + +I DV+GS H P L N+
Sbjct: 192 NLHGAYTWWSYRYDARERNVGWRLDYFLVSDVWKERIEEAKILSDVKGSSHCPIELVANV 251
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 163 bits (412), Expect = 6e-37, Method: Composition-based stats.
Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 35/303 (11%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + + FT I + + D ++ +QE + ++
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDI----------VSELDADILGLQETKLQEGQVEIDLP 58
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH W R+GY+G AV ++ +P+ V H ++ G +G
Sbjct: 59 GYHQVWSYAERKGYSGTAVFTRDEPLSVRHADAVLAAG-----------------RAAGL 101
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ +L + A +GRV +E+E+F+ V+VY P A+ +L+ L ++ W+ R L
Sbjct: 102 TDDQLELVAVAAT----EGRVCALEFERFWFVDVYTPNAQGELARLDTRMAWDDAYRAFL 157
Query: 915 KSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
SL + KPVV GD NVAHN ID+ P +N G +GF+ +ER+ F LD G+ D R
Sbjct: 158 LSLEDETGKPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKFVELLDAGYTDTFRA 217
Query: 973 LYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
P+ Y++W Y ++ GWR+DYFL+S + + I D+ GSDH P L
Sbjct: 218 ANPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDSIADRVRATGIRSDIFGSDHCPVTLE 277
Query: 1031 LNL 1033
+ L
Sbjct: 278 IGL 280
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 150/311 (48%), Gaps = 58/311 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMR---QHDLNVFCIQEIRCPLEKLPEC 792
K+ SWNVNG+RA L + + G R + D +V C+QE + + + +
Sbjct: 98 KLLSWNVNGLRA------LLKEKGAEHEQGSMIARLAAREDFDVLCLQETKLQEKDVADI 151
Query: 793 PEGYHA-----FWFPGTRQ-GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+ A W T + GY+G A++S+ KP+ V +G +
Sbjct: 152 RKSLLASHEVSLWGCSTSKLGYSGTAIISRIKPISVQYGLGI------------------ 193
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL- 905
P+H + +GR++T E++ FY V Y P + L L+ +
Sbjct: 194 -------PNHDQ-------------EGRLITCEFDTFYFVVSYVPNSGAKLERLAYRTQE 233
Query: 906 WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDL 964
W+ L HL+ L + KPV+L GDLN AH ID+ P N +GFT +ER F +NFLD
Sbjct: 234 WDVALSSHLRELEKKKPVILTGDLNCAHEDIDINDPAGNRKSAGFTDEERESFKTNFLDH 293
Query: 965 GFLDVHRHLYPNHRIYTYWPY--YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGS 1022
GF+D R +PN YTYW Y RP K KGWRLDYFL+S L ++ D DV GS
Sbjct: 294 GFVDTFRKQHPNAVAYTYWGYRTASRP-KNKGWRLDYFLVSGSLSENVHDSYTIPDVGGS 352
Query: 1023 DHAPQILYLNL 1033
DH P L L +
Sbjct: 353 DHCPIALILKI 363
>gi|348027153|ref|YP_004766958.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
gi|341823207|emb|CCC74131.1| exodeoxyribonuclease III [Megasphaera elsdenii DSM 20460]
Length = 254
Score = 162 bits (411), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 145/293 (49%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + K F IF + D +VFC+QE + ++ G
Sbjct: 6 KFISWNVNGLRA--VMKKGFLDIF----------QALDADVFCLQETKLQAGQIDLDLPG 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ ++ P+ V +G G +EH
Sbjct: 54 YEQYWNYADRKGYSGTAIFTRLAPLSVRYGM---------------GIDEHDH------- 91
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+E+ +Y V Y P ++ +L+ L ++ W R +L
Sbjct: 92 ----------------EGRLITLEFPDYYFVTCYTPNSQSELARLPYRMKWEDDFRQYLL 135
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KPV++ GDLNVAH ID+ P TN +GF+ +ER ++ L GF D R+ YP
Sbjct: 136 DLHQEKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERQKMTDLLAAGFTDTWRYFYP 195
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ +Y++W Y + GWR+DYFL +K L S L+ I+ D+ GSDH P
Sbjct: 196 DVTGVYSWWSYRFKARQNNAGWRIDYFLTTKDLDSRLAKASIYTDITGSDHCP 248
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 162 bits (410), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVKLDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 243
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 162 bits (410), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKILTDIMGSDHCP 243
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 243
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 162 bits (410), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 52/293 (17%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F+ +F + D + FCIQE + ++ GYH
Sbjct: 5 SWNVNGLRA--VLKKNFSEVF----------EKLDADFFCIQETKLQEGQVELDLPGYHQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W R+GY+G A+ +K +P V++G + F+
Sbjct: 53 YWNYAERKGYSGTAIFTKHEPQSVSYG--------IKNSEFDH----------------- 87
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
+GRV+T+EY FYLV Y+P ++ L L ++ + +L L
Sbjct: 88 -------------EGRVITLEYASFYLVCCYSPNSQPKLKRLDFRMGFEDAFLNYLNDLK 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
E KPV++ GDLNVAH ID+ P TN +GF+ +ER+ + L+ G+LD R +P+
Sbjct: 135 EKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLLENGYLDTFRFFHPDET 194
Query: 979 -IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
IY++W Y ++ GWR+DYF++S+ LK L + EI D+ GSDH P +L
Sbjct: 195 GIYSWWSYRFNARKNNAGWRIDYFIVSESLKDSLENAEILTDIMGSDHCPVLL 247
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 40/241 (16%)
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 23 AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE----- 62
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++
Sbjct: 63 ------------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYV 104
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ Y
Sbjct: 105 KNLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFY 164
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + ++ GWR+DYF++S++LK L D +IH DV GSDH P L LN
Sbjct: 165 PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELN 224
Query: 1033 L 1033
L
Sbjct: 225 L 225
>gi|356537505|ref|XP_003537267.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Glycine max]
Length = 543
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 168/342 (49%), Gaps = 72/342 (21%)
Query: 717 DPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTSIFL 760
+P+ +L HK+ Q + +N K+ SWN NG+RA ++ F+++ L
Sbjct: 249 EPWTVLAHKKPQKGWIAYNPRTMRPPPLAQDTKFVKLLSWNANGLRALLKLEG-FSALQL 307
Query: 761 QQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFW-FPGTRQGYAGVAVL 814
Q++ D +V C+Q + + + E +GY ++FW F ++ GY+G A++
Sbjct: 308 AQRE--------DFDVLCLQXTKLQEKDIEEIKHHLIDGYDNSFWTFSVSKLGYSGTAII 359
Query: 815 SKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR 874
S+ KP+ V +G G ++H S+ GR
Sbjct: 360 SRIKPLSVRYGL---------------GISDHDSE-----------------------GR 381
Query: 875 VMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAH 933
++T E++ FYL+ Y P + + L LS ++ W+ L +LK L + KPV+L GDLN AH
Sbjct: 382 LVTAEFDTFYLICGYVPNSGDGLKRLSYRVTEWDPSLSNYLKELEKSKPVILTGDLNCAH 441
Query: 934 NHIDVALPLTNLGKSGFTIQERNYFS-NFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM 992
ID+ P N +G T +ER F+ NFL GF+D R +P YTYW Y K
Sbjct: 442 EEIDIYNPAGNKRSAGLTDEERKSFATNFLSRGFVDTFRRQHPGVIGYTYWGYRHGGRKF 501
Query: 993 -KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+GWRLDYFL+S+ + + D I DV GSDH P L + L
Sbjct: 502 NRGWRLDYFLVSESIADKVHDSYILPDVTGSDHCPIGLVVKL 543
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 146/292 (50%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F +IF + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--VLKKEFMTIF----------NELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 243
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDGGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 243
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 162 bits (409), Expect = 1e-36, Method: Composition-based stats.
Identities = 102/301 (33%), Positives = 148/301 (49%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
++ SWNVNG+RA + + F IF D +VF IQE + +L
Sbjct: 9 LRLVSWNVNGLRAVMKKDPSFPQIF----------EAADADVFAIQETKLQEGQLDLDLP 58
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYH W R+GY+G AV S+ +P+RV ++G
Sbjct: 59 GYHQTWNYAERKGYSGTAVFSREEPLRVIR----QIG----------------------- 91
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
++AD D+GRV +E+E+++ V+VY P +K L L +++W+ R L
Sbjct: 92 -------CEFAD----DEGRVCALEFERYWFVDVYTPNSKNGLLRLDERMVWDRSYREFL 140
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L + KPVV GD NVAH ID+ P TN +GF+ +ER F L+ GF+D R LY
Sbjct: 141 SGLAKEKPVVTCGDFNVAHEEIDLKNPDTNHMNAGFSDEEREGFGKLLEAGFVDSFRRLY 200
Query: 975 PNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y R + GWR+DYFL+S+ + + I DV GSDH P L L
Sbjct: 201 PDREDAYSWWSYRMRARERNVGWRIDYFLVSEDAADGIVEASILDDVYGSDHCPVQLTLR 260
Query: 1033 L 1033
+
Sbjct: 261 V 261
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 40 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 87
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G +
Sbjct: 88 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGMGV--------------------------- 120
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 121 -PEHDT----------EGRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 169
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 170 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 229
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 230 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 281
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 142/295 (48%), Gaps = 56/295 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA K GF F + D +VF +QE + +++ E
Sbjct: 2 KFVSWNVNGLRA-------------VMKKGFKEFFERVDADVFALQETKMQADQITSEME 48
Query: 795 --GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY+ + R+GY+G V K +P+ V + D+E
Sbjct: 49 FEGYYRYMNSAERKGYSGTMVYCKEEPISVQY------------------------DIEG 84
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
S +GRV+T+EY +Y V Y P +KE L+ L ++ W LR
Sbjct: 85 DTSM---------------EGRVITLEYPNYYFVTAYVPNSKEGLARLGFRMEWEDRLRD 129
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
HL L E+KPV+ GDLNVAH ID+ P +N GF+ +ER + L G++D R+
Sbjct: 130 HLNRLKEVKPVIYTGDLNVAHEEIDLKNPQSNHKNPGFSDEERQKMTELLADGYIDSFRY 189
Query: 973 LYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
LYP Y++W Y + GWR+DYF++S+ LK + + I +V+GSDH P
Sbjct: 190 LYPKEVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKVKNALIDDEVKGSDHCP 244
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 161 bits (408), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 148/295 (50%), Gaps = 52/295 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+ K SWNVNG+RA + K F F ++ D + FC+QE + +++
Sbjct: 3 SLKYISWNVNGLRA--CMKKGFMQSF----------KELDADCFCLQETKLQPDQIELDL 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY+ +W ++GY+G A+ +K KP+ VT+G M+ EH +
Sbjct: 51 PGYYQYWNSAVKKGYSGTALFTKIKPLSVTYGIGME---------------EHDQE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T ++ LV Y P ++ L+ L+ ++ W + +
Sbjct: 92 -------------------GRVITADFNDHCLVTCYTPNSQRGLARLTYRMKWEDDFKKY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L++ KPV+L GDLNVAH ID+A P +N +GFT ERN + L GF D R+L
Sbjct: 133 LLDLSKKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNKMTELLSDGFTDSFRYL 192
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ + + Y++W Y+ + + GWR+DYFL+S L+ + EIH + GSDH P
Sbjct: 193 HQDKKDAYSWWSYFAKSRERNIGWRIDYFLVSDILQPRIKAAEIHSSILGSDHCP 247
>gi|449135634|ref|ZP_21771081.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
gi|448885688|gb|EMB16112.1| exodeoxyribonuclease III [Rhodopirellula europaea 6C]
Length = 256
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 148/301 (49%), Gaps = 54/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPEC 792
K+ SWNVNGIRA ++K F F+ +V C+QE + E+ L
Sbjct: 5 LKLISWNVNGIRA--SMDKGFRD----------FVESEQPDVLCLQETKAEPEQVDLSWA 52
Query: 793 PE-GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
E GYH W T++GY+GV+ S+ KP +VT G +++ EH
Sbjct: 53 DELGYHQVWNTATKRGYSGVSTWSRVKPSKVTKGLNIE---------------EHD---- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
++GRV+T ++ F+LVNVY P ++ L+ L ++ W+
Sbjct: 94 -------------------NEGRVLTTTFDDFHLVNVYTPNSQRGLARLDYRMQWDEAFL 134
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
++K LN KPV+ GD+N AH ID+A P N +GF+ QER + GF+D R
Sbjct: 135 DYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLDAITEAGFIDSFR 194
Query: 972 HLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
+ Y++W Y D ++ GWRLDYF ++K+ ++D +I ++ GSDH P L
Sbjct: 195 QFHDGPGHYSWWTYRSDARARNIGWRLDYFWVAKKFWDRVADAQIRCEIHGSDHCPVELT 254
Query: 1031 L 1031
L
Sbjct: 255 L 255
>gi|417303374|ref|ZP_12090432.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|421610893|ref|ZP_16052058.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|440713979|ref|ZP_20894567.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
gi|327540346|gb|EGF26932.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
gi|408498347|gb|EKK02841.1| exodeoxyribonuclease III [Rhodopirellula baltica SH28]
gi|436441175|gb|ELP34441.1| exodeoxyribonuclease III [Rhodopirellula baltica SWK14]
Length = 256
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 148/301 (49%), Gaps = 54/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPEC 792
K+ SWNVNGIRA ++K F F+ +V C+QE + E+ L
Sbjct: 5 LKLISWNVNGIRA--SMDKGFRE----------FVESEQPDVLCLQETKAEPEQVDLSWA 52
Query: 793 PE-GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
E GYH W T++GY+GV+ S+ +P++VT G S++ EH
Sbjct: 53 DELGYHQVWNTATKRGYSGVSTWSRVEPLKVTKGLSIE---------------EHD---- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
++GRV+T ++ F+LVNVY P ++ L+ L ++ W+
Sbjct: 94 -------------------NEGRVLTTTFDDFHLVNVYTPNSQRGLARLDYRMQWDEAFL 134
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
++K LN KPV+ GD+N AH ID+A P N +GF+ QER + GF+D R
Sbjct: 135 DYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLDAVTEAGFIDSFR 194
Query: 972 HLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
+ Y++W Y D ++ GWRLDYF ++K+ ++D I ++ GSDH P L
Sbjct: 195 QFHDGPGHYSWWTYRSDARARNIGWRLDYFWVAKKFWDRVADARIRCEIHGSDHCPVELT 254
Query: 1031 L 1031
L
Sbjct: 255 L 255
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 160 bits (406), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I ++ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKILTEIMGSDHCP 243
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 149/300 (49%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SW+VNG++ S +N F F +Q D + FC+Q R + P
Sbjct: 2 KFISWSVNGLK--SAINHGFVEDFKRQ----------DADFFCLQRTRLDKGEEPIQIPN 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W ++GY+G A+ +K KP V +G + + F++
Sbjct: 50 YYQYWNYAEKKGYSGTAIFTKYKPENVIYGMNNSI--------FDK-------------- 87
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GR++T+EY FYL++VY P + E L L +L W+ ++
Sbjct: 88 ----------------EGRLITLEYPNFYLIDVYVPVSGEKLQHLDYRLDWDRAFLDYVI 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L KPV++ GD+++A+ ID+A P N K+GFT QER F L+ G D R+L+P
Sbjct: 132 NLQSSKPVIIGGDMSIAYQPIDLAEPTENHHKAGFTKQERADFGKLLNAGLTDTFRYLHP 191
Query: 976 N-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
N H YT+W Y YD + GWRLDYFL+S K + + +I DV+GS H P L N+
Sbjct: 192 NLHGAYTWWSYRYDARERNVGWRLDYFLVSDVWKERIEEAKILSDVKGSSHCPIELVANV 251
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 160 bits (405), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 145/305 (47%), Gaps = 61/305 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K SWNVNG+RA V F F Q D + FC+QE + L ++ + P+
Sbjct: 2 KFISWNVNGLRA--AVTHGFMDTF----------NQLDADFFCVQETKLQLGQIDLKLPD 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y+ +W ++GY+G A+ +K KP+ + G
Sbjct: 50 NYYQYWNYADKKGYSGTAIFTKHKPLNASLGI---------------------------- 81
Query: 855 SHPELTTIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GID+ GRV+T+EY FYL+ Y P + + L L + WN
Sbjct: 82 --------------GIDEFDHEGRVITLEYPSFYLITCYTPNSGQQLKRLDFRQNWNKAF 127
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
++ L+ K V+ GDLNVAH ID+ P +N +GFT +ERN F++ L+ F+D +
Sbjct: 128 LDYINQLSAKKDVIFCGDLNVAHETIDLKNPSSNHHAAGFTDEERNDFTHLLESNFVDTY 187
Query: 971 RHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
RH YP Y++W Y + + GWR+DYF+ S L L D +IH ++ GSDH P
Sbjct: 188 RHFYPEVTEQYSWWSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIHSEIFGSDHCPVE 247
Query: 1029 LYLNL 1033
L N+
Sbjct: 248 LTANI 252
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 160 bits (404), Expect = 4e-36, Method: Composition-based stats.
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F + F + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVKHGFVTTF----------NELDADFFCVQETKLQAGQIELDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K +P+ VT+G +
Sbjct: 50 YYQYWNYAERKGYSGTAIFTKHEPLNVTYGIGV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE D+GRV+T+EY +Y++ Y P + +L L + W ++
Sbjct: 83 -PEFD----------DEGRVITLEYADYYVLTCYTPNSGGELKRLDYRQQWEDAFLTYIN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KP++ GDLNVAH +ID+ +N +GFT +ER F L G+ D RH YP
Sbjct: 132 SLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y GWR+DYF+ S+QL S L + IH ++ GSDH P
Sbjct: 192 DQTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFGSDHCP 244
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 141/294 (47%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF-MRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA K GF + D + FC+QE + ++
Sbjct: 13 KLISWNVNGLRA-------------AVKHGFVMTFNELDADFFCVQETKLQAGQIELDFP 59
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W R+GY+G A+ +K +P+ VT+G +
Sbjct: 60 GYYQYWNYAERKGYSGTAIFTKHEPLNVTYGIGV-------------------------- 93
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE D+GRV+T+EY +Y++ Y P + +L L + W ++
Sbjct: 94 --PEFD----------DEGRVITLEYADYYVLTCYTPNSGGELKRLDYRQQWEDAFLTYI 141
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
SL+ KP++ GDLNVAH +ID+ +N +GFT +ER F L G+ D RH Y
Sbjct: 142 NSLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFY 201
Query: 975 PNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ IY++W Y GWR+DYF+ S+QL S L + IH ++ GSDH P
Sbjct: 202 PDQTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFGSDHCP 255
>gi|32475225|ref|NP_868219.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
gi|32445766|emb|CAD78497.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
Length = 256
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 147/301 (48%), Gaps = 54/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPEC 792
K+ SWNVNGIRA ++K F F+ +V C+QE + E+ L
Sbjct: 5 LKLISWNVNGIRA--SMDKGFRE----------FVESEQPDVLCLQETKAEPEQVDLSWA 52
Query: 793 PE-GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
E GYH W T++GY+GV+ S+ +P++VT G S++ EH
Sbjct: 53 DELGYHQVWNTATKRGYSGVSTWSRVEPLKVTKGLSIE---------------EHD---- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
++GRV+T ++ F+LVNVY P ++ L+ L ++ W+
Sbjct: 94 -------------------NEGRVLTTTFDDFHLVNVYTPNSQRGLARLDYRMQWDEAFL 134
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
++K LN KPV+ GD+N AH ID+A P N +GF+ QER + GF+D R
Sbjct: 135 DYVKKLNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLDAVTEAGFIDSFR 194
Query: 972 HLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
+ Y++W Y D ++ GWRLDYF ++K ++D I ++ GSDH P L
Sbjct: 195 QFHDGPGHYSWWTYRSDARARNIGWRLDYFWVAKNFWDRVADARIRCEIHGSDHCPVELT 254
Query: 1031 L 1031
L
Sbjct: 255 L 255
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 160 bits (404), Expect = 5e-36, Method: Composition-based stats.
Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F + F + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVKHGFVTTF----------NELDADFFCVQETKLQAGQIELDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K +P+ VT+G +
Sbjct: 50 YYQYWNYAERKGYSGTAIFTKHEPLNVTYGIGV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE D+GRV+T+EY +Y++ Y P + +L L + W ++
Sbjct: 83 -PEFD----------DEGRVITLEYADYYVLTCYTPNSGGELKRLDYRQQWEDAFLTYIN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KP++ GDLNVAH +ID+ +N +GFT +ER F L G+ D RH YP
Sbjct: 132 SLSANKPLIFCGDLNVAHENIDLKNWHSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y GWR+DYF+ S+QL S L + IH ++ GSDH P
Sbjct: 192 DQTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFGSDHCP 244
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 159 bits (403), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 145/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F +IF + D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--VLKKEFMTIF----------NELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ R+GY+G A+ +K +P+ VT+G G EH ++
Sbjct: 50 YHQYFNYAERKGYSGTAIFTKHEPLNVTYGM---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GR++T+EY FYL+ VY P + +L L + W+ +
Sbjct: 89 -----------------GRIITLEYPNFYLMTVYTPNSGGELKRLDYRQQWDKDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN + FT +ER F+ LD GF+D R+LYP
Sbjct: 132 QLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNASFTDEERADFTKQLDSGFIDTFRNLYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S+ K ++ D +I D+ GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKILTDIMGSDHCP 243
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 60/308 (19%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP------ 790
I WN+NG++A +NK +FLQ +D ++ C EI+ EK+
Sbjct: 77 IWVWNINGLQAV--INKGMLDVFLQGEDP---------DIVCFNEIKTDPEKIKSASFHT 125
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P+ Y +W +++GY+G +++K KP++VT F+ G EH
Sbjct: 126 KIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVT---------------FDIGIEEHDQ- 169
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNS 908
+GRV+T E+ +F LV VY P + +DL LS + W+
Sbjct: 170 ----------------------EGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDK 207
Query: 909 FLRGHLK--SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+L + KP++L GDLNVA N +DV + +T +ER F +F++ G+
Sbjct: 208 AFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGY 267
Query: 967 LDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
+D RHLYP+ R YTY+ ++ KGWR+DYF++ + + ++D+ IH D GSDH
Sbjct: 268 IDTFRHLYPDKREYTYFSARFNNKVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHV 327
Query: 1026 PQILYLNL 1033
P L+L+L
Sbjct: 328 PVCLHLDL 335
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 159 bits (402), Expect = 8e-36, Method: Composition-based stats.
Identities = 93/293 (31%), Positives = 143/293 (48%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + +KD + Q D + FC+QE + ++ G
Sbjct: 2 KFISWNVNGLRA------------VLKKDFMTTFNQLDADFFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH ++ ++GY+G A+ +K KP+ T+G G EH +
Sbjct: 50 YHQYFNYAEKKGYSGTAIFTKHKPLTATYGI---------------GQPEHDQE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+EY FYL+ Y P +++ L L ++ W + + ++
Sbjct: 89 -----------------GRVITLEYPTFYLITCYTPNSQDKLKRLDYRMRWENAFQTYIA 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L+ KPV+ GDLNVAH ID+ TN +GF+ +ER + L+ GF D R+ YP
Sbjct: 132 DLSTQKPVIFCGDLNVAHEPIDLKNDKTNHHNAGFSDEERGQMTTLLNRGFTDTFRYFYP 191
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y + GWR+DYF+ S L+ L D +IH ++ GSDH P
Sbjct: 192 DQPDIYSWWSYRFHARDNNAGWRIDYFITSNDLQPKLVDAKIHTEIFGSDHCP 244
>gi|403335404|gb|EJY66875.1| Exonuclease III [Oxytricha trifallax]
gi|403370677|gb|EJY85206.1| Exonuclease III [Oxytricha trifallax]
Length = 583
Score = 159 bits (402), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 60/308 (19%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP------ 790
I WN+NG++A +NK +FLQ +D ++ C EI+ EK+
Sbjct: 77 IWVWNINGLQA--VINKGMLDVFLQGEDP---------DIVCFNEIKTDPEKIKSASFHT 125
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P+ Y +W +++GY+G +++K KP++VT F+ G EH
Sbjct: 126 KIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVT---------------FDIGIEEHDQ- 169
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNS 908
+GRV+T E+ +F LV VY P + +DL LS + W+
Sbjct: 170 ----------------------EGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDK 207
Query: 909 FLRGHLK--SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+L + KP++L GDLNVA N +DV + +T +ER F +F++ G+
Sbjct: 208 AFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGY 267
Query: 967 LDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
+D RHLYP+ R YTY+ ++ KGWR+DYF++ + + ++D+ IH D GSDH
Sbjct: 268 IDTFRHLYPDKREYTYFSARFNNKVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHV 327
Query: 1026 PQILYLNL 1033
P L+L+L
Sbjct: 328 PVCLHLDL 335
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 144/291 (49%), Gaps = 53/291 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPEGYH 797
SWNVNG+R S V K F + F + D + F +QE R + E P Y+
Sbjct: 5 SWNVNGLR--SAVKKNF----------YEFFNEIDADFFNVQETRVHENDIALEVPGNYY 52
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+W R GYAGV +K K V +G G+D +
Sbjct: 53 QYWDSAERPGYAGVTTFTKHKAQNVIYGVD-------------------GTDTDV----- 88
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
+GR +T+EY FYL+N Y P + E+L L +L W+ + L
Sbjct: 89 --------------EGRCLTLEYPDFYLINTYVPNSGEELQRLDYRLDWDQKFITFVNKL 134
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH 977
KPV++ GD++VA+ ID+ P + K+G+T QER+ F L GF+D R L+P+
Sbjct: 135 TGTKPVIIGGDMSVAYQPIDIDDPEEDHHKAGYTQQERDDFGRLLASGFVDTFRALHPHQ 194
Query: 978 R-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W Y YD ++ +GWR+DYFL+S +++ +++ I G+V GSDHAP
Sbjct: 195 SGAYTWWSYRYDERARDRGWRMDYFLVSDSIQNDVAESNILGNVMGSDHAP 245
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 149/301 (49%), Gaps = 57/301 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--CP 793
K SWNVNG+RA + + G +R D +QE + ++ +PE
Sbjct: 6 KFLSWNVNGLRA------------VIKSGGLDLIRNGDYFAIAMQETKVDVKSVPEEMYH 53
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GYH + P R+GY+G LS+ KP+ V++GF ES
Sbjct: 54 LGYHVYNNPAKRKGYSGTMTLSREKPIDVSYGF------------------------ES- 88
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
++GR++ +E++ FY +N Y P ++ L+ L +KL ++ G+
Sbjct: 89 -----------------EEGRILNLEFDNFYFINAYFPNSQHGLTRLDLKLDFDKKFLGY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L + KP+++ GD NVAH ID+A P N +GFTI+ER + S FL G++D R
Sbjct: 132 ANDLRKKKPLIICGDFNVAHEEIDIARPKDNEHNAGFTIEERTWMSQFLSSGYVDTFRLF 191
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ Y++W Y ++ K GWR+DYF++S +K + I +V+GSDHAP L ++
Sbjct: 192 TTDGGHYSWWSYRFNAREKNIGWRIDYFVVSDDIKDKVKASRILENVKGSDHAPVELEID 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 57/306 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--EC 792
KI SWNV G + S ++K FT ++ + + +V C+QE + + +
Sbjct: 105 MKIISWNVAGFK--SVLSKGFTE----------YVEKENPDVLCLQETKINPSNIKKDQM 152
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
P+GY + ++G+ G VL+K KP +T G G + NE
Sbjct: 153 PKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGI-----------GIAKHDNE------- 194
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKLL-WNSFL 910
GRV+T+EY+QFY+VN Y P A L L ++ W+
Sbjct: 195 --------------------GRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDF 234
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ LN KP++ GDLNVAH ID+ P TN +GFTI+ER FSNFL+ G++D +
Sbjct: 235 QAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKGYVDSY 294
Query: 971 RHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIH-GDVEGSDHAPQ 1027
RH P YT+W Y SK GWRLDYF++SK+L + H V GSDH P
Sbjct: 295 RHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMGSDHCPI 354
Query: 1028 ILYLNL 1033
+ ++L
Sbjct: 355 GVVVDL 360
>gi|403336088|gb|EJY67231.1| Exonuclease III [Oxytricha trifallax]
Length = 640
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 60/308 (19%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP------ 790
I WN+NG++A +NK +FLQ +D ++ C EI+ EK+
Sbjct: 77 IWVWNINGLQAV--INKGMLDVFLQGEDP---------DIVCFNEIKTDPEKIKSASFHT 125
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P+ Y +W +++GY+G +++K KP++VT F+ G EH
Sbjct: 126 KIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVT---------------FDIGIEEHDQ- 169
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNS 908
+GRV+T E+ +F LV VY P + +DL LS + W+
Sbjct: 170 ----------------------EGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDK 207
Query: 909 FLRGHLK--SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+L + KP++L GDLNVA N +DV + +T +ER F +F++ G+
Sbjct: 208 AFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGY 267
Query: 967 LDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
+D RHLYP+ R YTY+ ++ KGWR+DYF++ + + ++D+ IH D GSDH
Sbjct: 268 IDTFRHLYPDKREYTYFSARFNNKVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHV 327
Query: 1026 PQILYLNL 1033
P L+L+L
Sbjct: 328 PVCLHLDL 335
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 147/294 (50%), Gaps = 54/294 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K SWNVNGIRA + +KD + D ++FCIQE + +++ +C
Sbjct: 1 MKCISWNVNGIRA------------VLKKDFVEILYALDADIFCIQETKAQPDQIEVDCE 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ + ++GY+G + K +P+ + +G +M+ EH ++
Sbjct: 49 LYPYQYINSAQKKGYSGTMIFCKEEPLSIRYGMNME---------------EHDTE---- 89
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T+EY ++Y+V VY P + + L L ++ W+ +
Sbjct: 90 -------------------GRVITLEYPEYYVVTVYTPNSGDGLKRLDYRMEWDKAFSAY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
LKSL+ KPV+ GD NVA+ ID+ P TN +GFT +ERN F L F+D +R L
Sbjct: 131 LKSLD--KPVMACGDFNVANEEIDIKNPKTNHKNAGFTDEERNSFKENLLAYFVDTYRSL 188
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP Y++W Y + K GWR+DY+L+S +LK + D +I D+ GSDH P
Sbjct: 189 YPEKVEYSWWSYRFKAREKNAGWRIDYWLVSPELKDKIVDAKILTDIYGSDHCP 242
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 162/309 (52%), Gaps = 46/309 (14%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQE---IRCPLEKLPE- 791
KI +WNVNG+RA + K S+ L+ +++ Q D ++FC+ E R L+K+ +
Sbjct: 2 KIVAWNVNGLRA---ILKRDESVHLR-----AYVAQEDPDIFCLSETKICRDELQKIEDF 53
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
P+ H +W ++GYA A+ SKTKP+ V + G + G ++ +N G D E
Sbjct: 54 LPQYEHQYWSCAVKKGYASTAIFSKTKPLSVKDEI---IVGDHDSKGVSKSANS-GKDQE 109
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFL 910
GR + +EY +F+LV+ Y P A L L + W+ +
Sbjct: 110 ---------------------GRFLALEYPKFWLVHTYVPNAGGKLERLDFRTNQWDKAM 148
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+K + + KPVV GDLNVAH ID+ P N +GFT +ER F N L+ GF+D
Sbjct: 149 LREMKEMEKTKPVVWCGDLNVAHQEIDIHNPKGNKRSAGFTDEERESFGNILENGFVDTF 208
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDL-------EIHGDVEGS 1022
RHL+P+ Y+Y+ Y ++ ++ KGWRLDYF++S++L ++ + I G V GS
Sbjct: 209 RHLHPDKVEYSYFGYRHNMRAQNKGWRLDYFVVSEKLMPNVVSVFGWERSSYIRGSVVGS 268
Query: 1023 DHAPQILYL 1031
DH P L L
Sbjct: 269 DHLPIGLEL 277
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 149/301 (49%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+K SWNVNG+RA + + FT IF D ++F +QE + ++
Sbjct: 29 YKFASWNVNGLRAVLKKDPSFTEIF----------ETIDADIFALQETKLQEGQVDLDIP 78
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y W R+GY+G AV S+ +P++V ++G V
Sbjct: 79 SYFQTWNYAERKGYSGTAVFSREEPLQVIR----QIGSPV-------------------- 114
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
AD ++GRV +E+++F+ V+VY P +KE L+ L +L+W+ R +
Sbjct: 115 ----------AD----NEGRVCALEFDRFWFVDVYTPNSKEQLARLDERLVWDERYRDFI 160
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KP++ GD NVAH ID+ P +N +GF+ +ER F+ LD GF D R+ +
Sbjct: 161 AELSAQKPLITCGDFNVAHTEIDLKNPSSNHKNAGFSDEERESFTKLLDAGFTDTFRYRH 220
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y ++ GWR+DYFL+S ++ ++ I +V GSDH P L +
Sbjct: 221 PDVTGAYSWWSYRFNARKNNAGWRIDYFLVSNRIAQQITGAAILNEVYGSDHCPVELTIE 280
Query: 1033 L 1033
L
Sbjct: 281 L 281
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 56/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC--PLEKLPECP 793
K+ SWNVNGI+A + QK F++Q + ++ C+QEI+ P + L
Sbjct: 2 KLISWNVNGIKA------------ILQKGFVDFVKQENPDILCLQEIKTNSPSQILD--L 47
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
Y +W +++GY+G A+ +K KP +T+G M++
Sbjct: 48 SEYKQYWNTASKKGYSGTAIFTKQKPKNITYG------------------------MDNF 83
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
P ++GRV+T EY+ +YLVNVY P ++ L+ L ++ W++ +
Sbjct: 84 PD---------------EEGRVITAEYDNYYLVNVYTPNSQRGLTRLDYRMKWDTKFLEY 128
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L SLNE KP++ GDLNVAH ID+ P TN +GFT +ER F +++ F+D R
Sbjct: 129 LLSLNESKPLIFCGDLNVAHKEIDLKNPKTNKKHAGFTEEERMGFDKYVENNFVDTFRLF 188
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YT+W Y ++ +K GWR+DYF S + +++ I + GSDH P L L+
Sbjct: 189 NKESDNYTWWSYMHNARAKNIGWRIDYFCTSNSIVNYVKKSVILDKIYGSDHCPIKLELD 248
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 151/294 (51%), Gaps = 54/294 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNGIRA + K F F + D ++F +QE + +++
Sbjct: 1 MKYVSWNVNGIRA--CLKKGFLESF----------KSLDADIFALQETKAQKDQIDLDIP 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY + ++GY+G A+L++ KP+ V++G G E+ +
Sbjct: 49 GYTLYTNDAIKKGYSGTAILTRMKPLSVSYGI---------------GIEEYDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +Y V Y P +K++L+ + ++ W +L
Sbjct: 89 ------------------GRVITLEFEDYYFVPCYTPNSKKELARIDYRMEWEDAFLAYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+LN KPV+L GDLNVAH+ ID+ P +N +GF+ QER+ + L G++D R+LY
Sbjct: 131 DALN--KPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSKMTELLSHGYIDTFRYLY 188
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ + YT+W Y + + GWR+DYF++S+ LK + + I+ D+ GSDH P
Sbjct: 189 PDKKDAYTWWSYMFKSRERNAGWRIDYFIVSESLKERIKESLIYSDILGSDHCP 242
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 145/301 (48%), Gaps = 58/301 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPE-- 791
K SWNVNGIRA + K GF+ +R D +V +QE + ++L +
Sbjct: 228 MKCISWNVNGIRAVA-------------KKGFADQLRTFDADVVALQETKIQEDQLTDEL 274
Query: 792 --CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
P GY ++W R+GY+GVA ++ PV V +G
Sbjct: 275 KNIP-GYTSYWHCAERKGYSGVAFYTRIPPVAVRYGLG---------------------- 311
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
PE +GRV+T+E+ YL+N+Y P + E L L+ KL +N
Sbjct: 312 ------DPEFDC----------EGRVLTLEFADCYLINIYFPNSAEKLVRLAHKLRFNDR 355
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
L G+ + L + KPV+L GD NVAH ID+ P TN+ +GFT +ER + +F+ GF+D
Sbjct: 356 LLGYARELEQKKPVILCGDFNVAHKEIDLKNPKTNVKNAGFTPEERAWMDSFVAAGFVDT 415
Query: 970 HRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R + YT+W Y ++ +K GWR+DYF +S + I +V GSDH P
Sbjct: 416 FRLFCEDPDQYTWWSYRFNARAKNVGWRIDYFCVSGSAADRVRSATILCEVMGSDHCPVA 475
Query: 1029 L 1029
L
Sbjct: 476 L 476
>gi|418070253|ref|ZP_12707528.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
gi|357539673|gb|EHJ23690.1| exodeoxyribonuclease III [Lactobacillus rhamnosus R0011]
Length = 252
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 144/292 (49%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 YYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 83 -PEHDT----------EGRIITLEYPKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH YP
Sbjct: 132 ELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S +S++ D +I + GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVASSAFQSYIQDAKILTQIMGSDHCP 243
>gi|423078997|ref|ZP_17067672.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
gi|357548454|gb|EHJ30318.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 21052]
Length = 253
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 144/293 (49%), Gaps = 51/293 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD + + D + FC+QE + ++
Sbjct: 2 LKMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 GYYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI-------------------------- 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 84 --PEHDT----------EGRIITLEYPKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYT 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH Y
Sbjct: 132 NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFY 191
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + + GWR+DYF+ S +S++ D +I + GSDH P
Sbjct: 192 PDTVTYSWWSYRFHARANNAGWRIDYFVASSAFQSYIQDAKILTQIMGSDHCP 244
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 157 bits (397), Expect = 3e-35, Method: Composition-based stats.
Identities = 96/293 (32%), Positives = 139/293 (47%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V F IF +Q D + FC+QE + ++ G
Sbjct: 2 KLISWNVNGLRA--AVKHGFIDIFNEQ----------DADFFCVQETKLQAGQIDLDFPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W R+GY+G A+ +K P+ VT+G +
Sbjct: 50 YQQYWNYAERKGYSGTAIFTKHTPLNVTYGIGV--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GRV+T+EY +Y++ Y P + +L L + W ++
Sbjct: 83 -PEFDT----------EGRVITLEYADYYVLTCYTPNSGGELKRLDYRQHWEDAFLTYIN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
SL+ KP++ GDLNVAH +ID+ +N +GFT +ER F L G+ D RH YP
Sbjct: 132 SLSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERGKFDRLLANGYTDTFRHFYP 191
Query: 976 NHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ IY++W Y GWR+DYF+ S+QL L + I DV GSDH P
Sbjct: 192 DQTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDGQLLNARILNDVFGSDHCP 244
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 157 bits (397), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 152/312 (48%), Gaps = 65/312 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
++ SWNVNG+RA K F+ IF K +VF +QE + ++ E P+
Sbjct: 2 RLVSWNVNGLRA--AEKKGFSDIFTSLK----------ADVFALQETKLQEGQIDLEFPD 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y + W R+GY+G AV ++ KP++V HG +
Sbjct: 50 -YESHWSYAERKGYSGTAVYARQKPLQVLHGLGV-------------------------- 82
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
P L T +GR+ +E+ +F+ V+VY P A+ +L+ + ++ W+ R
Sbjct: 83 --PHLDT----------EGRICALEFPEFWFVDVYTPNAQNELARIDHRMEWDDAFRDFC 130
Query: 915 KSLN-----------EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD 963
K L + KPV++ GD NVAH ID+ P +N G +GF+ +ER F+ LD
Sbjct: 131 KGLEKGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNPKSNRGNAGFSDEEREKFTKLLD 190
Query: 964 LGFLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
GF+D R L P Y++W Y ++ + GWR+DYFL+SK L + IH D+ G
Sbjct: 191 AGFVDTFRLLNPTEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLADRVRAARIHADLFG 250
Query: 1022 SDHAPQILYLNL 1033
SDH P L ++L
Sbjct: 251 SDHCPVSLDIDL 262
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 58/300 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---- 791
KI SWN+NGIRA + + ++ ++ C+ E++ + +
Sbjct: 88 KISSWNINGIRA-----------VTKHESAVQYLNDSKFDIICLNELKADQDVFDKENLG 136
Query: 792 CPEGYHAFW---FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
G H F F ++ GY+GVA+ SK KP+ V + G ++H
Sbjct: 137 AKFGKHYFLYLNFCKSKAGYSGVAIASKVKPLSVK---------------CDIGVDKH-- 179
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WN 907
D E GR +T E+EQFYLV+ Y P + + L L + W+
Sbjct: 180 DQE---------------------GRTLTAEFEQFYLVSCYVPNSGQKLERLDYRTKEWD 218
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+ +L+ L + KP +L GDLNVAH+ ID++ P N +GFT+QER+ FSN+L G++
Sbjct: 219 IDFQNYLEGLRKKKPTILCGDLNVAHHEIDLSNPAGNKKTAGFTLQERDQFSNYLQKGWV 278
Query: 968 DVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
D RHL+P Y+++ + S+ KGWRLDYF+I+K+ ++ +I+ VEGSDH P
Sbjct: 279 DSFRHLHPKEVKYSFFSARSNSRSQNKGWRLDYFIINKEASDAITVSDINLTVEGSDHVP 338
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 157 bits (396), Expect = 4e-35, Method: Composition-based stats.
Identities = 109/307 (35%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 109 DLPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E++ F LV Y P A L L + W+
Sbjct: 154 -----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDKA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FCKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 250
Query: 969 VHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + +K GWRLDYFL+S L S L D +I GSDH P
Sbjct: 251 SFRHLYPNTPYAYTFWTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 155/300 (51%), Gaps = 39/300 (13%)
Query: 717 DPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNV 776
D F E R+ + KI +WNVNG+RA V K S+ L+ +++ Q D ++
Sbjct: 92 DAFPSFEDVSRRSADDIDTKIVAWNVNGLRA---VLKRDESVHLR-----AYVAQEDPDI 143
Query: 777 FCIQE---IRCPLEKLPE-CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGG 832
FC+ E R L+KL + P+ H +W ++GYA A+ +KTKP+ V V G
Sbjct: 144 FCLSETKICRDELQKLEDFLPQYEHQYWSCAIKKGYASTAIFTKTKPLSVKDEI---VVG 200
Query: 833 VVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPA 892
+ G + +N G D E GR + +E+ +F+LV+ Y P
Sbjct: 201 DHDSKGVAKSAN-GGKDQE---------------------GRFLALEFPKFWLVHTYVPN 238
Query: 893 AKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFT 951
A L L + W+ + +K + + KPV+ GDLNVAH ID+ P N +GFT
Sbjct: 239 AGGKLERLDFRTTQWDKAMHREMKEMEKTKPVIWCGDLNVAHQEIDIHNPKGNHKSAGFT 298
Query: 952 IQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHL 1010
+ER F L+ GF+D RHL+P+ Y+Y+ Y ++ +K KGWRLDYF++S++L H+
Sbjct: 299 DEERESFGEILEDGFVDTFRHLHPDTVEYSYFGYRHNMRAKNKGWRLDYFVVSEKLLPHV 358
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium fasciculatum]
Length = 1238
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 144/303 (47%), Gaps = 62/303 (20%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLP--E 791
KI SWNV G A + K GF ++ + ++ C+QE + + K+P E
Sbjct: 115 IKIVSWNVAGFGACT-------------KKGFKDYLIKEQPDIVCLQETKIAVAKVPKSE 161
Query: 792 CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
PEGY + P + G+ G A+L+K KP+ +T G G ++H +
Sbjct: 162 IPEGYTYHFNPCIEKTGHHGTALLTKIKPISITSGI---------------GISKHDQE- 205
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAA----KEDLSMLSVKLL- 905
GRV+T E+E FY+VN Y P + KE L L +
Sbjct: 206 ----------------------GRVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKE 243
Query: 906 WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
W+ ++ LN KPVV GDLNVAH ID+A P +N +GFTI+ER FS L+ G
Sbjct: 244 WDVDFFKYMSDLNTKKPVVWCGDLNVAHTEIDLANPKSNSRTAGFTIEERTSFSGHLNSG 303
Query: 966 FLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
F+D HRH P YT+W Y +K GWRLDYF++ ++ I V+GSD
Sbjct: 304 FIDTHRHFNPGKTGTYTFWSYMGGARAKNAGWRLDYFIVPATFIGSIAASFIRSKVQGSD 363
Query: 1024 HAP 1026
H P
Sbjct: 364 HCP 366
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 153/293 (52%), Gaps = 52/293 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F L++ + + + ++ +QEI+ +L EG
Sbjct: 2 KFISWNVNGLRA--AVKKGF----LEK------LAEMNPDIIGLQEIKLSEGQLELELEG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y ++ R+GY+G AV +K KP+ VT+G G EH ++
Sbjct: 50 YELYYNYAERKGYSGTAVFTKLKPISVTYGI---------------GIEEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E +Y + Y P +K L L +++W R +L
Sbjct: 89 -----------------GRVITLEFEDYYFITCYTPNSKRKLERLDYRVVWEDAFRNYLN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ KP+VL GDLNVAHN ID+A P TN +GF+ +ER F+ L G++D RH YP
Sbjct: 132 ELDKNKPIVLCGDLNVAHNEIDLANPDTNHKSAGFSDEERAKFTELLASGYVDTFRHFYP 191
Query: 976 NHRI-YTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W +++ + GWR+DYF++S++ + D +IH V GSDH P
Sbjct: 192 DRADEYSWWSNFNKARERNIGWRIDYFVVSERFLDRIEDSKIHQSVMGSDHCP 244
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 143/301 (47%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+K+ SWNVNG+RA + FT IF + +VF +QE + ++
Sbjct: 7 YKLISWNVNGLRAVLKKEPSFTEIF----------ETINADVFALQETKLQEGQVELDLP 56
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY W R+GY+G AV S+ P++V V
Sbjct: 57 GYVQTWNYADRKGYSGTAVFSRETPLQVIRQIGCPVAD---------------------- 94
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D+GRV +E+E+F+ V VY P +K+ L+ L +L W+ R L
Sbjct: 95 ----------------DEGRVCALEFEKFWFVCVYTPNSKDQLARLDERLEWDQHYRDFL 138
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+ GD NVAHN ID+ P +N +GF+ +ER F+ LD GF D R+ +
Sbjct: 139 AELSKQKPVITCGDFNVAHNEIDLKNPSSNRQNAGFSDEERESFTKLLDAGFTDTFRYRH 198
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y ++ GWR+DYFL+S ++ + I ++ GSDH P L +
Sbjct: 199 PDITGAYSWWSYRFNARKNNAGWRIDYFLVSDRIAEQVKSASILSEIYGSDHCPIELSIE 258
Query: 1033 L 1033
L
Sbjct: 259 L 259
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 149/306 (48%), Gaps = 57/306 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--EC 792
KI SWNV G + S ++K FT + + + +V C+QE + + +
Sbjct: 105 MKIISWNVAGFK--SVLSKGFTEC----------VEKENPDVLCLQETKINPSNIKKDQM 152
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
P+GY + ++G+ G VL+K KP +T G G + NE
Sbjct: 153 PKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGI-----------GIAKHDNE------- 194
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKLL-WNSFL 910
GRV+T+EY QFY+VN Y P A L L ++ W+
Sbjct: 195 --------------------GRVITLEYVQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDF 234
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ LN KP++ GDLNVAH ID+ P TN +GFTI+ER FSNFL+ G++D +
Sbjct: 235 QAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKGYVDSY 294
Query: 971 RHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIH-GDVEGSDHAPQ 1027
RH P YT+W Y SK GWRLDYF++SK+L + H V GSDH P
Sbjct: 295 RHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMGSDHCPI 354
Query: 1028 ILYLNL 1033
+ ++L
Sbjct: 355 GVVVDL 360
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 54/301 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG RA + GF ++ + ++F +Q+IR ++
Sbjct: 13 KFISWNVNGFRA-------------AMRHGFLDTFKELNADIFGMQDIRLSPNEVSIDTT 59
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W + + G A+ +K KP+ V +G + S+ +
Sbjct: 60 GYYQYWNYSKEKSFDGTAIFTKIKPLAVANGIGV-------------------SEFDQ-- 98
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GR +T+EY FY V Y P + E L L ++ W+ R +L
Sbjct: 99 -----------------QGRTITLEYPNFYFVTTYVPFSGEQLQRLDFRIAWDQAFRKYL 141
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KPV++ GD++VAH ID+A P N +GFT QER+ F+ L+ GF D R+L+
Sbjct: 142 LKLEANKPVIIGGDMSVAHEPIDLAQPSENHHHAGFTEQERDDFTKLLNSGFTDTFRYLH 201
Query: 975 PNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN + IY+YW Y Y K +GWRLDY L+S L S + I ++ GSDH P L ++
Sbjct: 202 PNEKDIYSYWSYRYHGREKNEGWRLDYILVSNSLDSKIKKANILTEIPGSDHCPVSLEMD 261
Query: 1033 L 1033
+
Sbjct: 262 I 262
>gi|258507959|ref|YP_003170710.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|257147886|emb|CAR86859.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 252
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 143/292 (48%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 YYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 83 -PEHDT----------EGRIITLEYTKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH YP
Sbjct: 132 ELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S + ++ D +I + GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGSDHCP 243
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 155 bits (393), Expect = 8e-35, Method: Composition-based stats.
Identities = 102/301 (33%), Positives = 144/301 (47%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + + F IF Q D +VF IQE + ++
Sbjct: 11 LKLVSWNVNGLRAVMRKDPSFLQIF----------SQLDADVFAIQETKLQEGQVELDLP 60
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY W R+GY+G AV S+ P+RV + GSD+
Sbjct: 61 GYFQTWNFAERKGYSGTAVFSREDPLRVIR--------------------QIGSDV---- 96
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
AD D+GRV +E+ F+ V+VY P +K+ L+ + ++ W+ R L
Sbjct: 97 ----------AD----DEGRVCALEFPTFWFVDVYTPNSKQGLARIEERMGWDERFRLFL 142
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KP+V GD NVAH ID+ P TN GF+ ER+ F LD GF D R L
Sbjct: 143 LELDAHKPIVTCGDFNVAHQEIDLRNPSTNHENPGFSDAERDSFGRLLDAGFTDTFRSLN 202
Query: 975 PN-HRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y R + GWR+DYFL S+++ + IH +V GSDH P L +
Sbjct: 203 PDLEGAYSWWSYRMRARERNVGWRIDYFLTSERVADRIEGASIHDEVFGSDHCPIELQIR 262
Query: 1033 L 1033
L
Sbjct: 263 L 263
>gi|385827641|ref|YP_005865413.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|259649286|dbj|BAI41448.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 253
Score = 155 bits (393), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 143/293 (48%), Gaps = 51/293 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD + + D + FC+QE + ++
Sbjct: 2 LKMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 GYYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI-------------------------- 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 84 --PEHDT----------EGRIITLEYTKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYT 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH Y
Sbjct: 132 NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFY 191
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + + GWR+DYF+ S + ++ D +I + GSDH P
Sbjct: 192 PDTVTYSWWSYRFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGSDHCP 244
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 145/300 (48%), Gaps = 58/300 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---- 791
KI SWNVNGIRA ++ ++ +++ +V C+ E++ +
Sbjct: 88 KIASWNVNGIRAATK-----------REQAVKYLQDTKFDVICLNELKADQAVFDKENLG 136
Query: 792 CPEGYHAFW---FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
G H F F + GY+GVA+ SK KP+ V +G H
Sbjct: 137 AQFGKHYFLYLNFCKNKGGYSGVAIASKVKPISV----KCDIGISKHDQ----------- 181
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WN 907
+GR +T EYE+FYLV Y P A + L L + W+
Sbjct: 182 -----------------------EGRTLTAEYERFYLVACYVPNAGQKLERLDYRTKEWD 218
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+ +L+ L + KP +L GDLNV+H+ ID+A P N +GFT +ER+ F+N+L G++
Sbjct: 219 VDFQNYLEDLRKKKPTILCGDLNVSHHEIDLANPAGNKKTAGFTQEERDQFTNYLQKGWV 278
Query: 968 DVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
D RHL+P Y+Y+ ++ KGWRLDYF+I+K+ + +I+ VEGSDH P
Sbjct: 279 DSFRHLHPKEVKYSYFSARFNSKQSNKGWRLDYFIINKESTDAIIMSDINTAVEGSDHVP 338
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 62/308 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQE--IRCPL----EKL 789
KI +WN+NGI+A L++ + F + ++ C+ E I CP +L
Sbjct: 4 KIIAWNINGIKA-----------HLKKDNLFDLIETEKPHIICMGETKISCPFIDVQNQL 52
Query: 790 PECPEGY-HAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
E +GY + +W P ++GY+G A+ SK KP+ G N+ G
Sbjct: 53 KEKIKGYKYRYWSPCLVKKGYSGTAIFSKRKPISTYLGM-----------------NQPG 95
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LW 906
D D+GR++T+E++++YL++VY P + + L L + W
Sbjct: 96 ED---------------------DEGRMITLEFKEYYLIHVYTPNSGQGLVRLQYRTEEW 134
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFS-NFLDLG 965
+ R + +L +IKP+++ GDLNVA+ +ID+A P +N +GFT ER F L
Sbjct: 135 DKNFRKYCANLQKIKPIIICGDLNVANENIDLANPSSNKKNAGFTDVERKSFKLTLTKLN 194
Query: 966 FLDVHRHLYPNHRIYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
+D R+LYP Y++W YY RP + GWR+DYFL+S++L + D I + GSD
Sbjct: 195 LIDTFRYLYPTDIKYSFWTYYHNARPKNI-GWRIDYFLVSEKLLPKVKDSNILTHIMGSD 253
Query: 1024 HAPQILYL 1031
HAP IL L
Sbjct: 254 HAPVILKL 261
>gi|258539213|ref|YP_003173712.1| exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|385834871|ref|YP_005872645.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
gi|257150889|emb|CAR89861.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|355394362|gb|AER63792.1| exodeoxyribonuclease III [Lactobacillus rhamnosus ATCC 8530]
Length = 252
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 143/292 (48%), Gaps = 51/292 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + +KD + + D + FC+QE + ++ G
Sbjct: 2 KMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 YYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 83 -PEHDT----------EGRIITLEYPKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYTN 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH YP
Sbjct: 132 ELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFYP 191
Query: 976 NHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W Y + + GWR+DYF+ S + ++ D +I + GSDH P
Sbjct: 192 DTVTYSWWSYRFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGSDHCP 243
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 143/293 (48%), Gaps = 51/293 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD + + D + FC+QE + ++
Sbjct: 2 LKMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 GYYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI-------------------------- 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 84 --PEHDT----------EGRIITLEYTKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYT 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH Y
Sbjct: 132 NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFY 191
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + + GWR+DYF+ S + ++ D +I + GSDH P
Sbjct: 192 PDTVTYSWWSYHFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGSDHCP 244
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 50/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
++ SWNVNG+RA + F IF + ++F IQE + ++ +
Sbjct: 7 YRFVSWNVNGLRATLKKEPSFLEIF----------STLNADIFAIQETKLQAGQVDLDLD 56
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY W R+GY+G AV S+ KP+ +HT G NE
Sbjct: 57 GYTQTWSYAERKGYSGTAVFSREKPL-----------STIHTIGCKAADNE--------- 96
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV +E+E+F+ V+VY P +K +L+ L ++ W+ R L
Sbjct: 97 ------------------GRVCALEFEKFWFVDVYTPNSKNELARLDERMEWDKAYREFL 138
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ KPV+ GD NVAH ID+ P +N +GF+ +ER FS+ L GF D R +
Sbjct: 139 VGLDAQKPVITCGDFNVAHQEIDLKNPASNHENAGFSDEERAGFSSLLGAGFTDTFRSAH 198
Query: 975 PN-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y R + GWR+DYFL+S ++ + ++ I+ ++ GSDH P L L
Sbjct: 199 PTLEGAYSWWSYRMRSRERNAGWRIDYFLVSNRIANTVTSSAIYNEIYGSDHCPVGLELE 258
Query: 1033 L 1033
L
Sbjct: 259 L 259
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 138/296 (46%), Gaps = 54/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWN+NG+ A + L ++R D +V C QE + G
Sbjct: 62 KLISWNLNGLNAVHKKGHLV-----------KYVRDEDPDVICFQETKTQTSTAIAQLLG 110
Query: 796 Y---HAFWFPGTRQ-GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
H +W + GYAG A SK KPV VT+G G EH +
Sbjct: 111 NDYPHEYWNHSVNKLGYAGTATFSKVKPVSVTYGI---------------GIAEHDGE-- 153
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+T E+++FYLVN Y P A + L L + WN
Sbjct: 154 ---------------------GRVITTEFDRFYLVNTYIPNAGQKLERLGYRQEWNKDFL 192
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+LK+L + KPVV GDLNVAH+ ID+A P TN +GFT +ER F L+ GF+D R
Sbjct: 193 AYLKNLEQTKPVVWCGDLNVAHHDIDIANPKTNQKTAGFTKEERRDFGQLLESGFVDTFR 252
Query: 972 HLYPNHRIYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H P+ + +TYW ++ +K GWRLDYF++SK + + GSDH P
Sbjct: 253 HQNPDLQQFTYWSNRFNCRAKNLGWRLDYFVVSKDFLPECDKSFVRPNALGSDHCP 308
>gi|403374064|gb|EJY86966.1| Exonuclease III [Oxytricha trifallax]
Length = 628
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 60/308 (19%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP------ 790
I WN+NG++A +NK +FLQ +D ++ C EI+ EK+
Sbjct: 77 IWVWNINGLQA--VINKGMLDVFLQGEDP---------DIVCFNEIKTDPEKIKSASFHT 125
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P+ Y +W +++GY+G +++K KP++VT F+ G EH
Sbjct: 126 KIPKDYEQYWNCSKSKKGYSGTGLITKIKPIKVT---------------FDIGIEEHDQ- 169
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNS 908
+GRV+T E+ +F LV VY P + +DL LS + W+
Sbjct: 170 ----------------------EGRVITAEFSKFVLVAVYVPNSGDDLRRLSYRTQEWDK 207
Query: 909 FLRGHLK--SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+L + KP++L GDLNVA N +DV + +T +ER F +F++ G+
Sbjct: 208 AFFDYLDRTRIETNKPLILTGDLNVARNELDVFDTKGKDKVACYTPEERKSFESFINRGY 267
Query: 967 LDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
+D RHLYP+ R YTY+ ++ KGWR+DYF++ + + ++D+ IH D GSDH
Sbjct: 268 IDTFRHLYPDKREYTYFSARFNNKVTNKGWRIDYFVVHQDDINMVTDVTIHKDYNGSDHV 327
Query: 1026 PQILYLNL 1033
P L+L+L
Sbjct: 328 PVCLHLDL 335
>gi|229551812|ref|ZP_04440537.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|421769410|ref|ZP_16206117.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
gi|421772307|ref|ZP_16208963.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|229314756|gb|EEN80729.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|411183875|gb|EKS51010.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP3]
gi|411184541|gb|EKS51673.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus LRHMDP2]
Length = 253
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 143/293 (48%), Gaps = 51/293 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA + +KD + + D + FC+QE + ++
Sbjct: 2 LKMISWNVNGLRA------------VLKKDFMTIFNELDADWFCLQETKMQAGQVELDLP 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ ++ R+GY+G A+ +K KP+ VT+G +
Sbjct: 50 GYYQYFNYAERKGYSGTAIFTKHKPLNVTYGMGI-------------------------- 83
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
PE T +GR++T+EY +FYL+ VY P + +L L + W+ +
Sbjct: 84 --PEHDT----------EGRIITLEYPKFYLMTVYTPNSGGELKRLDYRQQWDRDFLAYT 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KP+V GDLNVAH ID+ TN +GFT +ER F+ L+ GF+D RH Y
Sbjct: 132 NELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQLNSGFIDTFRHFY 191
Query: 975 PNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + + GWR+DYF+ S + ++ D +I + GSDH P
Sbjct: 192 PDTVTYSWWSYRFHARANNAGWRIDYFVASSAFQPYIQDAKILTQIMGSDHCP 244
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/308 (35%), Positives = 149/308 (48%), Gaps = 52/308 (16%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQK--DGFSFMRQHDLNVFCIQEIR-----CPLEKL 789
I SWNV G+RA + K + + + +V C+QEI+ C +E L
Sbjct: 101 ILSWNVAGLRALLKKVKEVEAGTRNENIPTLVALAEAEQADVLCLQEIKLQEDHC-VEVL 159
Query: 790 PEC--PEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E PEG+H W ++GY+G A++S+ P+ V+ G G+ EH
Sbjct: 160 KELNLPEGWHVSWNCSRDKKGYSGTAIVSRQAPLSVSCGI---------------GAEEH 204
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-L 905
+ GRV+T E+ FYLVN Y P + E L L ++
Sbjct: 205 DGE-----------------------GRVITAEFSAFYLVNCYTPNSGEGLKRLGYRVEK 241
Query: 906 WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDL 964
W+ +LK L + KPVV+ GDLNVA ID+ P TNL +GFT QER F +N L
Sbjct: 242 WDKDFSAYLKRLEQHKPVVVTGDLNVAPAEIDIHSPKTNLKSAGFTPQERASFAANLLGQ 301
Query: 965 GFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
GF+D R YP YTYW Y ++ KGWRLD+FL+S+QL S L D + GSD
Sbjct: 302 GFVDCFRTQYPEAVAYTYWGYRFNARGNNKGWRLDHFLVSQQLHSSLHDCYHLPAIMGSD 361
Query: 1024 HAPQILYL 1031
H P L L
Sbjct: 362 HCPLGLVL 369
>gi|376316682|emb|CCG00067.1| exodeoxyribonuclease III [uncultured Flavobacteriia bacterium]
Length = 253
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 149/302 (49%), Gaps = 55/302 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI S+NVNGIRA + +KD + D +V CIQE + +++ E +
Sbjct: 1 MKIVSFNVNGIRA------------IMKKDFHESLAMMDPDVLCIQETKAQDDQVAEALK 48
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH F ++GY+G A+L+K KP+ V++ +++ EH ++
Sbjct: 49 PINGYHIFSNSAVKKGYSGTAILTKEKPISVSYDINIE---------------EHDTE-- 91
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GRV+ E+ +++V VY P + L L+ + W+
Sbjct: 92 ---------------------GRVICAEFSAYFVVTVYVPNSGSALKRLTYRQTWDKAFL 130
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVH 970
+LK+L + KPV++ GDLNVAH ID+A P N KS G+ +E + +L GF+D
Sbjct: 131 AYLKALEKKKPVIVCGDLNVAHRDIDLANPKPNYNKSAGYMQEEIDGIDAYLSAGFVDTF 190
Query: 971 RHLYPNHRIYTYWPYYDRPS-KMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
RH P+ + Y++W Y + GWR+DYFLIS L + +I+ +V GSDH P L
Sbjct: 191 RHFQPDTQKYSWWSYRAGARVRNVGWRIDYFLISPDLLKKVKKADIYNEVMGSDHCPVAL 250
Query: 1030 YL 1031
L
Sbjct: 251 EL 252
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 155 bits (391), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 145/297 (48%), Gaps = 56/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----E 791
K+ S+NVNGIR S + QK ++ + ++ +QE++ +LP
Sbjct: 2 KLISFNVNGIR--SNI----------QKGFLDYLISENPDIIGLQEVKAQENELPIKIDL 49
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
Y +W ++ Y+G A+ +K KP+ V++ + EH
Sbjct: 50 ASLWYEIYWNSANKKWYSGTAIFTKIKPLSVSYWLWLA---------------EHD---- 90
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
++ R++T+E+E FY VNVY P AK +L L + LW+S
Sbjct: 91 -------------------EEWRIITLEFENFYFVNVYTPNAKRELERLDYRQLWDSLFL 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+LK L + KPV+ D NVAH ID+ P TN +GFT +ER +FS F+ GF+D R
Sbjct: 132 DYLKRLEQNKPVITCWDFNVAHQEIDLTNPKTNKWNAGFTPEEREWFSKFISSGFIDTFR 191
Query: 972 HLYPNHRI-YTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YP+ Y++W + + ++ GWR+DYFLIS LK+ L I +V SDH P
Sbjct: 192 YFYPDKTWEYSWWSNFANSRARNIGWRIDYFLISNTLKNKLKSAFIKQEVRWSDHCP 248
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 148/296 (50%), Gaps = 55/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
K+ SWNVNGIRA +Q K FT ++ ++ C+QE++ +++ E C
Sbjct: 2 KLYSWNVNGIRAVAQ--KGFTE----------WVEAAQPDILCLQEVKAAEDQISEDIRC 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GYH+F+ R+GY+G AV K +P+ +T G S E
Sbjct: 50 IPGYHSFFHAAERKGYSGTAVYYKEEPISITTGLS-----------------------ED 86
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLR 911
+H +GR + +EY +F L N+Y P ++D L K+ ++ FL+
Sbjct: 87 RFNH---------------EGRTIIMEYPEFTLFNIYFPNGQKDDERLQFKMDFYDCFLK 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+ + K V++ GD+N AH +D+ P +N +SGF ER + +F + G++D +R
Sbjct: 132 DVNALVAQGKKVIICGDVNTAHTEMDLKNPKSNAKRSGFLPMEREWLDHFFENGYVDTYR 191
Query: 972 HLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
HL+P+ Y++W Y ++ + GWR+DYF +S + D IH +V GSDH P
Sbjct: 192 HLHPDTVEYSWWSYRFNARANNAGWRIDYFFVSDNAIDMVKDAAIHTEVTGSDHCP 247
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 147/302 (48%), Gaps = 57/302 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
+K SWNVNG+RA + S ++Q D +QE + +PE
Sbjct: 3 YKFLSWNVNGLRA------------AVKNGAVSVLKQDDYFGIALQETKADSTSVPEEMY 50
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GYH + P ++GY+G L + KP+ V++GF NE
Sbjct: 51 HLGYHLYNNPAKKKGYSGTMSLVREKPIAVSYGFE----------------NE------- 87
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GR++ +E+++FY +NVY P A+ L+ L +KL +
Sbjct: 88 -------------------EGRILNLEFDKFYFINVYFPNAQHGLTRLDMKLDFGEKFLE 128
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ L + KP+++ GD NVAH ID+A P N +GFT QER++ + FLD G++D +R
Sbjct: 129 YSNELRKKKPLIICGDFNVAHEEIDIARPKDNENNAGFTKQERDWMTKFLDSGYVDTYRI 188
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y ++ +K GWR+DYF++S ++ + EI V GSDHAP L +
Sbjct: 189 FMKEGGHYSWWSYRFNARAKNIGWRIDYFVVSDDIRDRVKKAEILETVTGSDHAPVTLEV 248
Query: 1032 NL 1033
+L
Sbjct: 249 DL 250
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 154 bits (389), Expect = 2e-34, Method: Composition-based stats.
Identities = 97/303 (32%), Positives = 145/303 (47%), Gaps = 65/303 (21%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA V K F F D +VF +QE + ++ GY
Sbjct: 5 SWNVNGLRA--VVKKGFNEAFAAL----------DADVFALQETKLQEGQIELDLPGYVQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
W ++GY+G AV S+ +P++V H VG P
Sbjct: 53 NWSYAEKKGYSGTAVFSREEPLQVVH----HVGT------------------------PA 84
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
L T +GR+ E+E+F+ V+VY P A+ +L+ L ++ W++ R K+L
Sbjct: 85 LDT----------EGRICACEFEKFWFVDVYTPNAQPELARLEHRMAWDAAFREFCKNLE 134
Query: 919 -------------EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
E KPV++ GD NVAH ID+ P +N G GF+ +ER+ F++ LD G
Sbjct: 135 AGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNRGNPGFSDEERSSFTSLLDAG 194
Query: 966 FLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
F D R L+P+ Y++W Y ++ GWR+DYFL+S L+ + I+ +V GSD
Sbjct: 195 FADTFRMLHPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASIYDEVMGSD 254
Query: 1024 HAP 1026
H P
Sbjct: 255 HCP 257
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 150/295 (50%), Gaps = 38/295 (12%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+ ++ SWNVNGIRA +++ F+ ++ ++ C+QE + ++
Sbjct: 2 DMRLYSWNVNGIRA-----------VIKKGTFLPFISEYQPDILCLQETKAKKNQVEIDL 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
Y W R GY+G A+ SK KP+ F + +N +++G+
Sbjct: 51 PDYFEIWNSAERAGYSGTAIFSKAKPLNTWLDFPEDI-----VKKYNLDQDDYGN----- 100
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK-LLWNSFLRG 912
P+ ++GR++ E++ F + VY P +K DLS L ++ W+
Sbjct: 101 PN---------------NEGRIIAAEFDNFIVATVYTPNSKGDLSRLQLRHQKWDKAWLE 145
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
++K L IKPV+ GDLNVAH D+A P N+GK GFT +ER F F+ GF D R
Sbjct: 146 YMKKLESIKPVLFCGDLNVAHTEDDLANPKPNIGKHGFTNEERAGFDAFIQSGFKDTFRI 205
Query: 973 LYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W ++ + ++ GWR+DY+L S++L + +++ +IH D+ GSDH P
Sbjct: 206 FTKGNGYYSWWTHWANARARNIGWRIDYWLASEKLANKITEAQIHPDIMGSDHCP 260
>gi|313232077|emb|CBY09188.1| unnamed protein product [Oikopleura dioica]
Length = 392
Score = 154 bits (389), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 147/311 (47%), Gaps = 62/311 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--EC 792
F+I +WNV G L+ I +KD ++ D ++ C+QE + L+K P E
Sbjct: 131 FRIVTWNVAG---------LYACI---KKDFCKAVKTLDCDILCLQETKLSLKKPPPAEI 178
Query: 793 PE-----GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
E Y + + GY+G A+LSK+KP+ V G G +H
Sbjct: 179 AEQLKEWKYRNYANSEGKAGYSGTAILSKSKPISVQRGI---------------GKTKHD 223
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LW 906
D GR T E+E+F+LV Y P + L L + W
Sbjct: 224 -----------------------DFGRSCTAEFEKFFLVTSYVPNSGRGLVNLDYRTNEW 260
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLG 965
S LR +L LN+ KPV+ GDLNVAH ID+ +N KS G+T E + L+LG
Sbjct: 261 ESDLRNYLTKLNKDKPVIYCGDLNVAHTAIDLKNDKSNYNKSAGYTQAEIDELEKLLELG 320
Query: 966 FLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLIS-KQLKSHLSDLEIHGDVEGS 1022
++D +R LYP YT+W Y SK GWRLDYFL+ K + + D+ +H V+GS
Sbjct: 321 YVDAYRKLYPAEEDCYTFWSYMGGARSKNVGWRLDYFLMKIKDCEEWIEDVVVHSKVQGS 380
Query: 1023 DHAPQILYLNL 1033
DH P + LNL
Sbjct: 381 DHCPVEIKLNL 391
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 153/300 (51%), Gaps = 55/300 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDG-FSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNVNGIRA K+G +F+ + + ++ +QEI+ LPE
Sbjct: 2 KILSWNVNGIRA-------------AVKNGILNFINEENPDIVLLQEIKSGKNDLPEELH 48
Query: 795 --GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY F P ++GY+G LSK +P+ + G +K D +S
Sbjct: 49 HMGYKIFINPAEKKGYSGTMALSKVEPLDYSSGIGIK-------------------DYDS 89
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GRV ++Y+ FY++N Y P ++ L+ L K+ +++
Sbjct: 90 -------------------EGRVQILKYDNFYIINTYFPNSQHGLTRLDYKIDFDNKFLE 130
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ L + KP+++ GD NVAH ID+A P N +GFTIQERN+ + FL+ G++D +R+
Sbjct: 131 FCEKLRKEKPLIITGDFNVAHEEIDIARPKDNENNAGFTIQERNWMTEFLNHGYIDTYRY 190
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y ++ +K GWR+DYF+++ ++ D I +V+GSDHAP L L
Sbjct: 191 FHKEPGHYSWWSYRFNARAKNIGWRIDYFIVTDDFIKNVKDSIILENVKGSDHAPLELLL 250
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 38/293 (12%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
++ SWNVNGIRA +++ F+ ++ ++ C+QE + ++
Sbjct: 2 RLYSWNVNGIRA-----------VIKKGTFLPFISEYQPDILCLQETKAKKNQVEIDLPD 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y W R GY+G A+ SK KP+ F + +N +++G+ P+
Sbjct: 51 YFEIWNSAERAGYSGTAIFSKAKPLNTWLDFPEDI-----VKKYNLDQDDYGN-----PN 100
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK-LLWNSFLRGHL 914
++GR++ E++ F + VY P +K DLS L ++ W+ ++
Sbjct: 101 ---------------NEGRIIAAEFDNFIVATVYTPNSKGDLSRLQLRHQKWDKAWLEYM 145
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K L IKPV+ GDLNVAH D+A P N+GK GFT +ER F F+ GF D R
Sbjct: 146 KKLESIKPVLFCGDLNVAHTEDDLANPKPNIGKHGFTNEERAGFDAFIQSGFKDTFRIFT 205
Query: 975 PNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y++W ++ + ++ GWR+DY+L S++L + +++ +IH D+ GSDH P
Sbjct: 206 KGNGYYSWWTHWANARARNIGWRIDYWLASEKLANKITEAQIHPDIMGSDHCP 258
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 154 bits (388), Expect = 3e-34, Method: Composition-based stats.
Identities = 97/303 (32%), Positives = 145/303 (47%), Gaps = 65/303 (21%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA V K F F D +VF +QE + ++ GY
Sbjct: 5 SWNVNGLRA--VVKKGFDEAFAAL----------DADVFALQETKLQEGQIELDLPGYVQ 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
W ++GY+G AV S+ +P++V H VG P
Sbjct: 53 NWSYAEKKGYSGTAVFSREEPLQVVH----HVGT------------------------PA 84
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
L T +GR+ E+E+F+ V+VY P A+ +L+ L ++ W++ R K+L
Sbjct: 85 LDT----------EGRICACEFEKFWFVDVYTPNAQPELARLEHRMAWDAAFREFCKNLE 134
Query: 919 -------------EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965
E KPV++ GD NVAH ID+ P +N G GF+ +ER+ F++ LD G
Sbjct: 135 AGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNPRSNRGSPGFSDEERSSFTSLLDAG 194
Query: 966 FLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
F D R L+P+ Y++W Y ++ GWR+DYFL+S L+ + I+ +V GSD
Sbjct: 195 FADTFRMLHPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDALRGAIESASIYDEVMGSD 254
Query: 1024 HAP 1026
H P
Sbjct: 255 HCP 257
>gi|218781643|ref|YP_002432961.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
gi|218763027|gb|ACL05493.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
Length = 253
Score = 154 bits (388), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 147/297 (49%), Gaps = 56/297 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM-RQHDLNVFCIQEIRCPLEKLPE-- 791
K SWNVNGIRA +K GF+ M + + ++ IQE R E+L E
Sbjct: 2 LKFVSWNVNGIRA-------------VEKKGFTDMVKDFNADILAIQETRALKEQLSEDL 48
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
Y ++WF ++GY+GV+V +K P+ V +G M
Sbjct: 49 INIADYTSYWFSAEKKGYSGVSVYTKQTPLDVMYG------------------------M 84
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
+S P H DA +GRV+T+EY+ FYL+NVY P A+ L L KL +N L
Sbjct: 85 DS-PEH---------DA----EGRVITLEYDDFYLMNVYFPNAQPKLVRLDWKLGFNQTL 130
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+L E K VVL GD NVAH ID+A P N G++ +ER + F+ G++D
Sbjct: 131 HKFANALGEKKSVVLCGDYNVAHKPIDLANPKQNEQNPGYSPEERAWMDEFIGSGYVDAF 190
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R YT+W Y ++ +K GWR+DYF + ++ K + + EI +V GSDH P
Sbjct: 191 RMFNQEPDNYTWWSYRFNARAKNIGWRIDYFCVDEKSKGRVKNAEILNEVMGSDHCP 247
>gi|406894390|gb|EKD39215.1| hypothetical protein ACD_75C00473G0002 [uncultured bacterium]
Length = 484
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 147/306 (48%), Gaps = 59/306 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPE-- 791
K SWNVNGIRA +K GF+ ++ D +V IQE + ++L +
Sbjct: 228 MKCISWNVNGIRA-------------VEKKGFAEQLQAFDADVVAIQETKAQEDQLSDEL 274
Query: 792 --CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
P GY ++W R+GY+GVAV ++ P V +G
Sbjct: 275 KNIP-GYTSYWHSAERKGYSGVAVYTRLAPAAVRYGMG---------------------- 311
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
PE +GRV+T+E+ YL+N+Y P + E+L L KL +N+
Sbjct: 312 ------DPEFDC----------EGRVLTLEFADCYLINIYFPNSAEELKRLDYKLRFNNR 355
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
L K L + KPV+L GD NVAH ID+ P N +GFT +ER + +F+ GF+D
Sbjct: 356 LLAFAKELEQRKPVILCGDFNVAHKEIDLKNPKANEKNAGFTPEERAWMDSFVAAGFVDT 415
Query: 970 HRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R + YT+W Y ++ +K GWR+DYF +S + + I +V GSDH P
Sbjct: 416 FRLFNQDPGQYTWWSYRFNARAKNVGWRIDYFCVSGAACARVKSATILDEVMGSDHCPVA 475
Query: 1029 L-YLNL 1033
L +L+L
Sbjct: 476 LEFLSL 481
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 153 bits (387), Expect = 5e-34, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 88/332 (26%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPEGYH 797
SWNVNG+RA K GF + D ++ +QE + ++ GY
Sbjct: 5 SWNVNGLRA-------------AVKKGFEESVAALDADIIALQETKLQEGQIDLSLPGYF 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
FW R+GY+G AV + KP+R HG
Sbjct: 52 QFWSYAERKGYSGTAVFCRQKPLRALHGL------------------------------- 80
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
D++ D+GR++ +E++ ++ V+VY P A+ +L+ + ++ W+ R K+L
Sbjct: 81 -------GDSALDDEGRIVALEFDDYWFVDVYTPNAQNELARIDHRMAWDDAFRDFCKNL 133
Query: 918 NE----------------------------------IKPVVLAGDLNVAHNHIDVALPLT 943
+ KPVV+ GD NVAH ID+ P
Sbjct: 134 EKGAIPAGVAVQDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVAHQEIDLKNPGP 193
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFL 1001
N G +GF+ +ER F+ LD GF+D R L+P+ Y++W Y ++ GWR+DYFL
Sbjct: 194 NRGNAGFSDEEREKFTRLLDAGFVDTFRVLHPDEAGAYSWWSYRFNARKNNAGWRIDYFL 253
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+S+ L+ + D +H D+ GSDH P + L++
Sbjct: 254 VSESLRDAIHDARMHADIMGSDHCPVSVELDV 285
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 153 bits (387), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 151/301 (50%), Gaps = 54/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECP 793
K+ SWNVNGIRA +NK F I + D ++FCIQE + +++ +C
Sbjct: 1 MKLISWNVNGIRA--VLNKGFIDI----------LNTLDADIFCIQETKAQPDQIEVDCD 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ + R+GY+G + SK +P+ V +G +
Sbjct: 49 LYLYQYINSAQRKGYSGTMIFSKIEPLSVHYGIDI------------------------- 83
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
P H +GRV+T+E++ +Y+V VY P + + L L ++ W+ +
Sbjct: 84 PEHDT-------------EGRVITLEFDSYYVVTVYTPNSGDGLKRLEYRMEWDKAFSNY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
++SL+ KPV+L GDLNVA+ ID+ P TN +GFT +ER+ F L D +R L
Sbjct: 131 IQSLD--KPVLLTGDLNVANEEIDIKNPKTNRRNAGFTDEERDSFKKNLLTILKDSYRTL 188
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
YP+ Y++W Y + K GWR+DY+L+S++L + D +I D+ GSDH P L +
Sbjct: 189 YPDKVEYSWWSYRFKAREKNAGWRIDYWLVSEELMPKVKDSKILTDIYGSDHCPVQLEIE 248
Query: 1033 L 1033
L
Sbjct: 249 L 249
>gi|347359779|ref|YP_387047.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
gi|342906313|gb|ABB37352.2| exodeoxyribonuclease III [Desulfovibrio alaskensis G20]
Length = 255
Score = 153 bits (386), Expect = 5e-34, Method: Composition-based stats.
Identities = 96/305 (31%), Positives = 150/305 (49%), Gaps = 58/305 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--- 792
K+ SWNVNG RA ++QK + + D +V +QE + E++
Sbjct: 2 KLYSWNVNGFRA------------IRQKPDWDWFSGCDADVIGLQETKAMPEQIDPADRN 49
Query: 793 PEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
P GYH++W T ++GY+GVA S+ +P+ V +
Sbjct: 50 PAGYHSYWLGATVKKGYSGVAAFSRREPLSVAY--------------------------- 82
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFL 910
+L QY +GRV+ +EY+ FY N+Y P + L KL +++FL
Sbjct: 83 ------DLPVEQYQG-----EGRVIMLEYDAFYYFNIYFPNGQSGDERLQYKLGFYDAFL 131
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
H ++L KP+V+ GD N AH +D+A P N G SGF ER + F+D G++D
Sbjct: 132 E-HAQTLRRKKPIVVCGDFNTAHRPVDLARPRENEGTSGFLPVERAWMDKFIDHGYVDTF 190
Query: 971 RHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R ++P+ + +Y++W Y + + GWR+DYF +S +L+ + D I +V GSDH P
Sbjct: 191 RLVHPDAQAMYSWWSYRFKARDRNVGWRIDYFFVSDELRHAVKDATIEMEVFGSDHCPVG 250
Query: 1029 LYLNL 1033
L L L
Sbjct: 251 LELAL 255
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 141/304 (46%), Gaps = 55/304 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLP-- 790
+ ++ SWNVNG+RA + K GF+ + D ++ IQEI+ ++LP
Sbjct: 237 SLRLASWNVNGLRAIA-------------KKGFAELAGELDADLLAIQEIKAHPDQLPAE 283
Query: 791 -ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
GY AFW P R+GY+GVA+ S+ +P++V +G G E
Sbjct: 284 ARALPGYQAFWLPAKRKGYSGVAIYSRLEPLKVLYGM---------------GQEEKYEQ 328
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
+GRV+T+E+ F+LVN Y P A+ +L+ L KL +
Sbjct: 329 ----------------------EGRVLTMEFADFFLVNAYLPNAQPELARLPFKLDFCRH 366
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
+ ++L K VV+ GDLNVAH ID+A P N GF+ ER + FL GF D
Sbjct: 367 FQQFCENLATQKNVVVCGDLNVAHREIDLARPQENQQSPGFSPAERAWLDGFLANGFTDT 426
Query: 970 HRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R YT+W Y + GWR+DYF I + + + I ++ GSDH P
Sbjct: 427 FRLFNQEGGNYTWWSYRGGARQRNVGWRIDYFCIDSAGRRRVREAGIRPEIMGSDHCPVT 486
Query: 1029 LYLN 1032
L L
Sbjct: 487 LTLG 490
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 141/300 (47%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA + F +F + D + FCIQE + +L
Sbjct: 3 KFISWNVNGLRA--AIKHGFLQVF----------NEMDADFFCIQETKLAPGQLDLDLPD 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
YH +W ++GY+G A+ +K P+ V +G ++
Sbjct: 51 YHQYWNYAEKKGYSGTAIFAKQPPLSVQYGINV--------------------------- 83
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GRV+T+EY FYL+N Y P + +L L + +N ++
Sbjct: 84 -PEFDH----------EGRVITLEYPDFYLINTYVPNSGAELKRLDFRHGFNEAFYEYVN 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L++ K +V GDLNVAH ID+ P +N GFT +ER FS L GF D R+ YP
Sbjct: 133 QLSQQKSIVWCGDLNVAHQEIDLKNPQSNHHHPGFTDEERFDFSKLLKSGFTDTFRYFYP 192
Query: 976 NH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + + GWR+DYF+ S L S L D +IH + GSDH P L + L
Sbjct: 193 DQEHSYSWWSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIHDQILGSDHCPVELDIQL 252
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 141/292 (48%), Gaps = 53/292 (18%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG++A + K ++ + ++ QEI+ + L GY
Sbjct: 5 SWNVNGLKA------------IMSKGFIDIIKSFNADILMFQEIKTDVIPLDLQSLGYEI 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+ FP R+GY+G +++ P+ V++G G E+ S+
Sbjct: 53 YVFPAKRKGYSGTMTMTRIHPISVSYGL---------------GKEEYDSE--------- 88
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
GRV+ +EY ++Y++N Y P A E L L KL +N + SL
Sbjct: 89 --------------GRVIILEYPEYYVINTYFPNAGEGLKRLDFKLSFNRDFEKFVISLK 134
Query: 919 EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR 978
KP ++ GD NVAH ID+A P N+ +GFT QER +FS+FL LG++D +R
Sbjct: 135 --KPCIICGDFNVAHQEIDIARPKDNVNHAGFTPQEREWFSHFLSLGYVDTYRMFVKEGG 192
Query: 979 IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
Y++W Y + K GWR+DY ++S+ LK + +I V GSDHAP +L
Sbjct: 193 HYSWWSYRFHAREKNIGWRIDYCVVSESLKGRVIKADILEKVMGSDHAPILL 244
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 152 bits (385), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 54/309 (17%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC---PLEKLP 790
+ KI +WNVNG+RA + + + + +++R+ D ++ C+ E + +EK+
Sbjct: 112 SLKIIAWNVNGLRALLKYD--------ESRYFHAYVREEDADIICLSETKIDSPQVEKME 163
Query: 791 EC-PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ P+ +W ++GYAG AV SK +P++V
Sbjct: 164 DLLPKYPFQYWSCAHKKGYAGTAVCSKLEPLQVR-------------------------- 197
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNS 908
SH + +T+ G +GR + +E+E+F+LV+ Y P A L L + W++
Sbjct: 198 -----SHLDDSTL------GSTEGRFLALEFEKFWLVHTYVPNAGMKLERLGDRTTQWDA 246
Query: 909 FLRGHLKSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLG 965
L L+SL + K V+ GDLNVAH ID+ P N KS GFT ERN F L G
Sbjct: 247 VLLQTLQSLEKESEKGVIWCGDLNVAHQDIDIHDPKNNRNKSPGFTDAERNNFGETLKTG 306
Query: 966 FLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
F+D RH +P + +TYW Y ++ ++ KGWRLDYF++S++L + + + V+GSDH
Sbjct: 307 FVDTFRHFHPEKQQFTYWSYRFNARTRNKGWRLDYFVVSERLMAQVKASFVREGVKGSDH 366
Query: 1025 APQILYLNL 1033
P L+L
Sbjct: 367 VPVGAILSL 375
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 152 bits (385), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 57/302 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
+K SWNVNG+RA V S+F +Q D +QE + +PE
Sbjct: 3 YKFLSWNVNGLRA--AVKNGAVSVF----------KQDDYFGIALQETKADSTSVPEEMY 50
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY+ + P ++GY+G L + KP+ V++GF NE
Sbjct: 51 HLGYYLYNNPAKKKGYSGTMSLVREKPIDVSYGFE----------------NE------- 87
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GR++ +E+++FY +NVY P A+ L+ L +KL ++
Sbjct: 88 -------------------EGRILNLEFDKFYFINVYFPNAQHGLTRLDMKLDFDEKFLE 128
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ L + KP+++ GD NVAH ID+A P N +GFT QER++ + FLD G++D +R
Sbjct: 129 YSNELRKKKPLIICGDFNVAHEEIDIARPKDNENNAGFTKQERDWMTKFLDSGYVDTYRI 188
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y++W Y ++ +K GWR+DYF++S ++ + EI V GSDHAP L +
Sbjct: 189 FMKEGGHYSWWSYRFNARAKNIGWRIDYFVVSDDIRDRVKKAEILETVTGSDHAPVTLEV 248
Query: 1032 NL 1033
+L
Sbjct: 249 DL 250
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 153/307 (49%), Gaps = 64/307 (20%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIR------CPLEKLPEC 792
+WNV G+R+ + N LF F+ + +V C+QE + E
Sbjct: 73 TWNVAGMRS-TVKNPLF----------LGFLSKLGPDVICLQETKLSDKGQVSEEVTQSL 121
Query: 793 PEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
+ YH W T R+GY+G A+ ++ +P+ V +G +H
Sbjct: 122 SDQYHDIWNHCTARKGYSGTAIFTREEPLSVLYGLQ---------------EEKHN---- 162
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFL 910
++GRV+T+EYE+++LVN Y P A E L L+ ++ W +
Sbjct: 163 -------------------EEGRVITLEYEKYFLVNAYVPNAGEGLRRLNYRIDSWEKDM 203
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+L LN+ KPV+ GDLNVAH ID+ P + +GFT QER F++ L GF+D
Sbjct: 204 CQYLCGLNQKKPVIYTGDLNVAHQEIDIYQPKGHEKHAGFTPQERQKFTDLLQCGFVDAF 263
Query: 971 RHLYPNHRIYTYWPYYDRPSKMK----GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R+LYP+ + +TYW + +K K GWRLDYF+ S++L + + E+ ++ SDH P
Sbjct: 264 RYLYPHRQSFTYW---SKRAKAKERNHGWRLDYFVTSERLVPCILECEMFENIYISDHCP 320
Query: 1027 QILYLNL 1033
+L+L++
Sbjct: 321 LMLHLDI 327
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 148/300 (49%), Gaps = 54/300 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+++ SWNVNGIRA +++K +++ + +V +QE + E+L E
Sbjct: 227 SYRYISWNVNGIRA------------VEKKGFIDIVQELNPDVIGLQETKAQPEQLSESL 274
Query: 794 E---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GY ++W+ R+GY+GVA SK +P++V +G G+ E +
Sbjct: 275 KNIPGYTSYWYSAQRKGYSGVAFYSKHEPLQVIYGI---------------GAEEFDCE- 318
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GRV+T+E+ YL +Y P + + L L KL +N L
Sbjct: 319 ----------------------GRVITLEFADHYLATIYFPNSADQLKRLDYKLRFNRAL 356
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ L + K V+L GD NVAH ID+ P +N+ +GFT +ER + FL+ G+ D
Sbjct: 357 LAFFQKLEKEKAVILCGDFNVAHKEIDLKNPKSNVKNAGFTPEERAWMDEFLEAGYTDTF 416
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R + Y++W Y + SK GWR+DYF +S+ + + + EI +V GSDH P +L
Sbjct: 417 RLFNQDPENYSWWSYRFSARSKNIGWRIDYFCVSENGQKRIVNAEILPEVMGSDHCPVLL 476
>gi|374301084|ref|YP_005052723.1| exodeoxyribonuclease III [Desulfovibrio africanus str. Walvis Bay]
gi|332554020|gb|EGJ51064.1| exodeoxyribonuclease III [Desulfovibrio africanus str. Walvis Bay]
Length = 254
Score = 151 bits (382), Expect = 2e-33, Method: Composition-based stats.
Identities = 99/303 (32%), Positives = 143/303 (47%), Gaps = 57/303 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--- 792
K+ SWNVNG RA + K+ ++R +V C+QE + E++ E
Sbjct: 2 KLLSWNVNGFRA------------VAGKNFLDWLRASAADVVCLQETKLWPEQITEQELH 49
Query: 793 PEGYHAFWFP-GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
P+GY W TR+GY+GVA L KP+ + G
Sbjct: 50 PDGYTGVWNSHATRKGYSGVASLFTRKPLSTSFGLP------------------------ 85
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFL 910
DA +GR++ +EYE+FYL NVY P ++ L KL +++FL
Sbjct: 86 --------------DARFRGEGRLICLEYERFYLCNVYFPNGQKGGERLRFKLGYYDAFL 131
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
L+ L + KPVV+ GD N AH ID+A P N SGF +ER + F+ GF+D
Sbjct: 132 DYALE-LRKHKPVVVCGDFNTAHKEIDLAHPAANAHTSGFLPEERQWLDRFVAAGFVDTF 190
Query: 971 RHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R P YT+W Y+ + + GWR+DYF +S++L+ + I V GSDH P L
Sbjct: 191 RLFEPGGGHYTWWSYFTKARERNVGWRIDYFFVSEELRGAVKRAWIEPGVPGSDHCPVGL 250
Query: 1030 YLN 1032
L+
Sbjct: 251 ELD 253
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 146/303 (48%), Gaps = 64/303 (21%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF-MRQHDLNVFCIQEIRCPLEKLPECP- 793
KI +WNV +RA + KD F+F + ++ CIQE + ++
Sbjct: 10 KIATWNVASLRA-------------RWKDNFTFYINSSKPDIICIQETKFHVDMKESLKN 56
Query: 794 ---EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+GY ++F + GYAG + +K KPV V F
Sbjct: 57 FKLDGYKGYFFHAKKAGYAGTCIYTKYKPVSVKRSF------------------------ 92
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSF 909
AD DGR +T+E++ FYL+N Y A EDL L K+ WN
Sbjct: 93 --------------ADP----DGRCITMEFKNFYLINTYVVNAGEDLGRLDYKIKEWNPK 134
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
+R H+ L + KPV+ GDLNVAH ID+ + +G+T +ER +F +FL+ G +D+
Sbjct: 135 IRNHIMELEKKKPVIWTGDLNVAHKPIDIWQAEGHEKIAGYTDEERKWFDDFLNEGHIDI 194
Query: 970 HRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQ--LKSHLSDLEIHGDVEGSDHAP 1026
+R L+P +T++ Y + SK +GWR+DYF+ K K +SD I G ++GSDH P
Sbjct: 195 YRELHPESHEFTFFNYRGQAKSKNQGWRIDYFITGKGNIEKLGISDCVIEGTIDGSDHQP 254
Query: 1027 QIL 1029
IL
Sbjct: 255 VIL 257
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 145/299 (48%), Gaps = 59/299 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNGIRA V K F + + D +VFC+QE + +++ E G
Sbjct: 2 KLVSWNVNGIRA--SVKKGFEEV----------VSSFDADVFCVQETKAQDDQVKEALAG 49
Query: 796 ---YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
Y F ++GY+G A+LSK KP+ T + G EH +
Sbjct: 50 ISDYELFCNSAEKKGYSGTAILSKKKPLTFT---------------VDMGKEEHDT---- 90
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GR+ VEYE+F+LVNVY P + L L + +W+
Sbjct: 91 -------------------EGRITHVEYEEFHLVNVYVPNSGSGLKRLDYRSIWDKDFTA 131
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFL-DLGFLDVH 970
+LK L+E KP+++ GD NVAH D+A P +N K SGFT E + F L +L +D
Sbjct: 132 YLKKLSESKPLIITGDFNVAHTANDLANPKSNYNKTSGFTQVEIDGFDAILKELNLVDSF 191
Query: 971 RHLYPN--HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R L+P H+ YT+W + GWR+DYFL+S+ + + EIH V GSDH P
Sbjct: 192 RTLHPTTFHK-YTFWSMRGGARGRNVGWRIDYFLVSESIWPKVQSAEIHDQVMGSDHCP 249
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 150/300 (50%), Gaps = 52/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K F F ++ + ++FC+QE + ++ G
Sbjct: 3 KLISWNVNGLRA--VLGKNFMEDF----------QKLNADIFCLQETKLQEGQIHLDLPG 50
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH
Sbjct: 51 YFQYWNYAIKKGYSGTAIFTKEEPLSVQYGI---------------GITEHDQ------- 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+GRV+T+E++ +YL+ VY P ++ +L L ++ + +
Sbjct: 89 ----------------EGRVITLEFKDYYLITVYVPNSQNELKRLPYRMEFEDAFLNFIL 132
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L + KPV+ GDLNVAH ID+ P TN +GF+ +ER FS L G+LD R+ YP
Sbjct: 133 NLEKKKPVIYCGDLNVAHEEIDLKNPDTNHLNAGFSDEERAKFSRVLSSGYLDSFRYFYP 192
Query: 976 N-HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ Y++W Y + + GWR+DYF++S +LK L IH +V GSDH P + L++
Sbjct: 193 DKEEEYSWWSYRTKARDRNVGWRIDYFVVSVKLKDKLLSASIHQEVMGSDHCPVEITLDI 252
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM 45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM 45221]
Length = 262
Score = 150 bits (380), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 142/304 (46%), Gaps = 62/304 (20%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECP-EGY 796
SWNVNG+RA K GF F+ +V C+QE + + + GY
Sbjct: 8 SWNVNGLRA-------------VLKKGFDDFLASQQPDVLCLQETKISADLTADFAFAGY 54
Query: 797 -HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
+ +W ++GY+G A++S+ +P+ V +G ++
Sbjct: 55 PYVYWNCAEKKGYSGTAIISQIEPISVRYGLGIE-------------------------K 89
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAA------KEDLSMLSVKLLWNSF 909
H + +GRV+T E+E +YLV VY P + K + L W+
Sbjct: 90 HDQ-------------EGRVITAEFEDYYLVTVYTPNSQNHDENKRPRRLDYRTLEWDVD 136
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
++K L KPVV GDLNVAH ID+A P TN +GFT +ER F ++ GF+D
Sbjct: 137 FLAYVKGLEVTKPVVFCGDLNVAHTEIDLANPKTNRKNAGFTDEERGRFDAIIEAGFIDT 196
Query: 970 HRHLYPNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
RHLYP+ Y++W Y + GWR+DYF +S +K+ + D I D GSDH P
Sbjct: 197 FRHLYPDRTEQYSWWSYRAAARQRNIGWRIDYFCVSDAVKNQIRDATILADTLGSDHCPV 256
Query: 1028 ILYL 1031
L L
Sbjct: 257 GLRL 260
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 151/302 (50%), Gaps = 57/302 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI SWNVNGIRA +++K F + D ++ C+QE + E+L + +
Sbjct: 2 KILSWNVNGIRA------------VEKKGAFQDVFEKLDPDILCLQETKASEEQLTDNIK 49
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GY++F+ ++GY+GVA+ SKTKP+ + + G D+
Sbjct: 50 KIPGYYSFFESAVKKGYSGVALYSKTKPLSIKN---------------------MGIDIF 88
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
D+GR + ++E F L+N Y P ++E L KL + S L
Sbjct: 89 D------------------DEGRYIEAKFENFTLINCYFPNSQEKGKRLEYKLNFCSDLL 130
Query: 912 GHLKSLNE-IKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ SL E + +VL GD N+AH ID+ P +N GF +ER + S FL+ G++D+
Sbjct: 131 DYCNSLVENGENIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEEREWMSKFLNSGYIDIF 190
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R+LYPN YT+W Y + K GWR+DY ++K S + +EI ++ GSDH P ++
Sbjct: 191 RYLYPNEIKYTWWSYRFKAREKNIGWRIDYHCVNKDFISTIKKVEILDNITGSDHCPVLI 250
Query: 1030 YL 1031
L
Sbjct: 251 EL 252
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 60/305 (19%)
Query: 736 KIGSWNVNGIRAW-SQVNKLFTSIFLQQKDGFSFMR---QHDLNVFCIQEIRCPLEKLPE 791
K+ SWNVNG+RA + N+L +++G R D +V C+QE + + +
Sbjct: 39 KVISWNVNGLRACMKRKNEL-------EEEGSVLARLANSEDFDVLCLQETKLQEKDVEA 91
Query: 792 CPE----GY-HAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
+ GY ++FW ++ GY+G A++S+ KPV VT+G G ++
Sbjct: 92 IKQKILGGYSNSFWTCSSSKLGYSGCALISRIKPVSVTYGL---------------GISQ 136
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL 905
H + GRV+T E++ F+LV+VY P + + L L+ +
Sbjct: 137 HDGE-----------------------GRVVTAEFDTFFLVSVYVPNSGQRLERLTYRTT 173
Query: 906 -WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLD 963
W+ +L L + KPV++ GDLN AH ID+ P N +GFT +ER F +NF+D
Sbjct: 174 EWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPDGNKRSAGFTCEERTSFQTNFID 233
Query: 964 LGFLDVHRHLYPNHRIYTYWPYYD--RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
G +D R +P +TYW Y RP KGWRLDYFL+S+ L S+++D + ++G
Sbjct: 234 KGLVDTFRKQHPLAVGFTYWSYRSNARPQN-KGWRLDYFLVSQGLVSNVADSYVLPQLDG 292
Query: 1022 SDHAP 1026
SDH P
Sbjct: 293 SDHCP 297
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 149/301 (49%), Gaps = 54/301 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNGIRA + K FT + + + D + CIQE + E++ +
Sbjct: 1 MKLISWNVNGIRA--VMKKGFTDV----------LDELDADFVCIQETKAHPEQIESYTD 48
Query: 795 GY-HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
Y + + R+GY+G VL K KP+ + +G ++
Sbjct: 49 NYPYQYINSAKRKGYSGTMVLCKKKPLSIKYGINV------------------------- 83
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
PE D+GR++T+EY +FYLV VY P + + L L +L W+ +
Sbjct: 84 ---PEFD----------DEGRIITLEYPEFYLVTVYTPTSGDGLMRLDYRLEWDEAFGNY 130
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
LKSL+ KPV+ GD NVA+N IDV P G +GF+ +ER+ F L +D +R L
Sbjct: 131 LKSLD--KPVMACGDFNVANNEIDVPYPDMIRGTAGFSDEERDSFKENLLSNLVDTYRVL 188
Query: 974 YPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P Y++W Y + + G RLDY+L+S LK + D +I D+ GSDH P +L +N
Sbjct: 189 NPETIQYSWWSYRGQARENNIGMRLDYWLVSNDLKDKIVDSKILDDIYGSDHCPIMLDIN 248
Query: 1033 L 1033
+
Sbjct: 249 I 249
>gi|339446107|ref|YP_004712111.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
gi|338905859|dbj|BAK45710.1| hypothetical protein EGYY_27130 [Eggerthella sp. YY7918]
Length = 285
Score = 150 bits (379), Expect = 4e-33, Method: Composition-based stats.
Identities = 102/331 (30%), Positives = 155/331 (46%), Gaps = 86/331 (25%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA +NK F I + +++ L QE + L+ LP+ Y
Sbjct: 5 SWNVNGLRA--VLNKGFEDIVCEIDADIVALQETKL-----QEGQATLD-LPQ----YRE 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G AV K +P++V HG GSD
Sbjct: 53 YWSYAQKKGYSGTAVFCKEQPLQVLHGL--------------------GSD--------- 83
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
Y DA +GR++ +E+ F+ V+VY P A+ +L+ ++ ++ W+ R K L
Sbjct: 84 -----YLDA----EGRIVALEFPGFWFVDVYTPNAQNELARIAHRMQWDDAFRDFCKGLE 134
Query: 919 E----------------------------------IKPVVLAGDLNVAHNHIDVALPLTN 944
E KPVV+ GD NVAH ID+ P N
Sbjct: 135 EGVLPAGVPVQRPAPGEGHVTISELPLTQPGESTDPKPVVMCGDFNVAHQEIDLKNPGPN 194
Query: 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRPSKMK-GWRLDYFLI 1002
GK+GF+ +ER F++ LD GF+D RHL+P+ Y++W Y + + GWR+DYFL+
Sbjct: 195 RGKAGFSDEERGKFTDLLDAGFVDSFRHLHPDVTGAYSWWSYRFKARQTNAGWRIDYFLV 254
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
S+ L + I+ +V GSDH P + L+L
Sbjct: 255 SEALAPKIESACIYDEVYGSDHCPVGIELDL 285
>gi|239792809|dbj|BAH72703.1| ACYPI007473 [Acyrthosiphon pisum]
Length = 175
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLN 930
++GRV+ EYEQF+LV+ Y P A L L ++ W+ R +LK L+ KPVVL GDLN
Sbjct: 11 NEGRVIEAEYEQFFLVSTYIPNAGAGLKTLPKRMKWDEAFRKYLKELDTKKPVVLTGDLN 70
Query: 931 VAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPYY-DR 988
VAH ID+A P TN +GFT +ER+ S L+ GF+D R L P YT+W Y+ +
Sbjct: 71 VAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQGFVDTFRTLNPEKTGAYTFWTYFHNS 130
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+K GWRLDYF+ SK+ ++ D I +V GSDH P + Y+N+
Sbjct: 131 RAKNVGWRLDYFITSKRFMDNVCDSTIRNEVLGSDHCPIVFYINI 175
>gi|341882542|gb|EGT38477.1| CBN-EXO-3 protein [Caenorhabditis brenneri]
Length = 293
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 147/312 (47%), Gaps = 60/312 (19%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
+Q W F WNV G+RA + + F+ + +Q D + + E +C E
Sbjct: 35 NQKSWKFVC--WNVAGLRACVKKSD-FSEVLAEQPD-----------IVFLGETKCK-EW 79
Query: 789 LPECPEGYHAF---WFPGTRQ--GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGS 843
PE E + + T + GYAGV +LSK P+++ G
Sbjct: 80 PPEVEETFKDYSKTLVVSTEKNGGYAGVGLLSKCAPLKIHKGIG---------------- 123
Query: 844 NEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK 903
D +S GR++ EY QFY + Y P + L L +
Sbjct: 124 ---DPDFDSA-------------------GRLIIAEYSQFYFMGAYVPNSGAKLVNLEKR 161
Query: 904 LLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFL 962
W L L+ +NE KPV+ GDLNVAHN ID+ P +N K +GFT QER +F L
Sbjct: 162 GKWEKLLTDKLREMNEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWFGEML 221
Query: 963 DLGFLDVHRHLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
++GF D R L+P + Y++W Y + K GWRLDYF++S ++ ++ +I V+G
Sbjct: 222 EIGFTDSFRKLHPESKKYSFWSYLANSREKDVGWRLDYFVVSDRIMDNVKKSDIMSAVKG 281
Query: 1022 SDHAPQILYLNL 1033
SDHAP ++ L+L
Sbjct: 282 SDHAPIVMQLDL 293
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 149 bits (377), Expect = 6e-33, Method: Composition-based stats.
Identities = 97/303 (32%), Positives = 146/303 (48%), Gaps = 55/303 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPEC 792
KI SWNVNGIRA +Q K + + D + +QE + +EK+
Sbjct: 2 KIVSWNVNGIRA------------VQGKGFAETLARLDADCLLLQETKAQVDQIEKVTAD 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+GYH + R+GY+GV+++S+ +P+ V G EH +
Sbjct: 50 IDGYHIYSNCAERKGYSGVSLMSRAEPLAVVKDI---------------GIAEHDRE--- 91
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
GRV+ E+E F+LVNVY P + ++L L + W++
Sbjct: 92 --------------------GRVIAAEFEHFHLVNVYVPNSGQELVRLDYRRTWDAEFLT 131
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVHR 971
+L L KPV++ GD NVAH ID+A P N KS G+T E + FS FLD GF+D R
Sbjct: 132 YLLKLESRKPVIVCGDFNVAHREIDIARPKANYNKSAGYTQAEIDGFSRFLDAGFVDTFR 191
Query: 972 HLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
H +P+ Y++W + + + GWR+DY L S+ L + I +V GSDH P +
Sbjct: 192 HHHPDTVAYSWWSFRANARANNIGWRIDYALASRALADKVKQAFILPEVTGSDHCPVGIE 251
Query: 1031 LNL 1033
++L
Sbjct: 252 IDL 254
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 149 bits (377), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 55/295 (18%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGY 796
I SWNVNG+RA + +K+ F ++ + ++ CIQE + ++ +
Sbjct: 3 IVSWNVNGVRA------------VVKKEFFESVKYMNPDILCIQETKAQDNEVAKALSPL 50
Query: 797 HAFWFP---GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
F ++GY+G A LS TKP+ + G H ++
Sbjct: 51 ENFSLASNSANKKGYSGTATLSSTKPLTIKADI---------------GIEAHDTE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+ EYE FYLVNVY P + + L L + W+ +
Sbjct: 92 -------------------GRVLCTEYENFYLVNVYVPNSGQKLDRLEYRKQWDKDFLDY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVHRH 972
LK+L + KPV+ GD NVAH ID+ +N K +G+T E + +NF+ GF+D R
Sbjct: 133 LKNLEKKKPVIACGDFNVAHKAIDLKNDKSNYNKTAGYTQTEIDGMNNFIADGFVDSFRM 192
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
L+P+ +YT+W Y + + GWR+DYFL+S+ +K + ++ + D+ GSDH P
Sbjct: 193 LHPDEVVYTFWSYRFKSRERNTGWRIDYFLVSQSIKDKVKEVTVFSDIMGSDHCP 247
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum URH17-3-68]
Length = 219
Score = 149 bits (376), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 119/238 (50%), Gaps = 41/238 (17%)
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+ Y +W ++GY+G AV +K P+ V +G
Sbjct: 17 DSYQQYWNYAEKKGYSGTAVFTKIPPLSVRYGIE-------------------------D 51
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
S PE GR++T+E+E Y+V VY P AK DLS L +L W R +
Sbjct: 52 DSEPE--------------GRIITLEFEACYVVTVYTPNAKRDLSRLPYRLEWEDRFRAY 97
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L L++ KPV+ GDLNVAH ID+ +N G SGFT +ER+ + LD GF D R+L
Sbjct: 98 LLHLDQNKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERSKMTQLLDAGFTDTFRYL 157
Query: 974 YPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+P+ YT+W + + GWR+DYFLIS +L+ + D I V GSDH P +L
Sbjct: 158 HPDRADAYTWWSNMPKVRERNIGWRIDYFLISNRLRDKIIDARIDAHVLGSDHCPIVL 215
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
Length = 254
Score = 149 bits (376), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 142/304 (46%), Gaps = 57/304 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPEC-- 792
K+ SWNVNGIRA +K GF ++++ +V IQE++ ++L +
Sbjct: 2 KLYSWNVNGIRA-------------AEKKGFVDWLQREQPDVLGIQELKAEPDQLSDALK 48
Query: 793 -PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
EGYH F+ P R+GY+G AV K +P R+ G S FN
Sbjct: 49 DVEGYHVFFNPAERKGYSGTAVYYKREPKRILTGLS--------DERFNH---------- 90
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFL 910
+GR + +EY F L N+Y P + L K+ ++ F
Sbjct: 91 --------------------EGRTIILEYPDFTLYNIYFPNGSQSDERLQFKMDFYDGFW 130
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ + + V++ GD+N AH ID+ P +N +SGF ER + +F G++D +
Sbjct: 131 HDVDERVARGEKVIICGDVNTAHREIDLKNPKSNAKRSGFLPIEREWMDHFFAGGYIDTY 190
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R+ YP Y++W Y ++ GWR+DYF S K L+D IH DV GSDH P L
Sbjct: 191 RYFYPEQVTYSWWSYRFNARKNNAGWRIDYFFASDNAKDLLADAAIHTDVTGSDHCPISL 250
Query: 1030 YLNL 1033
LNL
Sbjct: 251 TLNL 254
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 142/296 (47%), Gaps = 55/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
+I +WNVNG+R+ + +K F++ D ++ C+QE + E++ +
Sbjct: 2 RIYTWNVNGLRS------------ILKKGFLDFIKDEDPDILCLQETKLQEEQIDDEIKN 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+GY+ ++ ++GY+GVA+ +K +P + +G ++
Sbjct: 50 LKGYYKYFSFANKKGYSGVAIFTKVEPKNIYYGIGIE----------------------- 86
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
E T +GR++ EYE F L N+Y P K L KL + +
Sbjct: 87 -----EFDT----------EGRILIAEYEDFILFNIYFPNGKMSDERLDYKLRFYDAIMD 131
Query: 913 HLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+ K+L E K +++ GD N AH ID+ P N SGF ER Y FL++GF+D +R
Sbjct: 132 YSKNLLEEGKNLIICGDYNTAHREIDLKNPKQNEKSSGFLPIEREYIDRFLEIGFIDAYR 191
Query: 972 HLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H YP+ YT+W Y + K GWR+DYF +S S + D+EI + GSDH P
Sbjct: 192 HFYPDKIEYTWWSYMFKAREKNVGWRIDYFFVSNNFISKIKDVEILTHIHGSDHCP 247
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 149 bits (375), Expect = 1e-32, Method: Composition-based stats.
Identities = 99/332 (29%), Positives = 151/332 (45%), Gaps = 88/332 (26%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPECPEGYH 797
SWNVNG+RA QK GF + + D ++ +QE + + Y
Sbjct: 5 SWNVNGLRA-------------VQKKGFEDIVCELDADIVALQETKLQEGQATLDLPQYR 51
Query: 798 AFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHP 857
+W ++GY+G AV +K +P++V HG GSD
Sbjct: 52 EYWSYAEKKGYSGTAVFTKEQPLQVLHGL--------------------GSD-------- 83
Query: 858 ELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL 917
Y DA +GR++ +E+ QF+ V+VY P A+ +L+ ++ ++ W+ R K L
Sbjct: 84 ------YLDA----EGRIVALEFPQFWFVDVYTPNAQNELARIAHRMEWDDAFRDFCKGL 133
Query: 918 NE----------------------------------IKPVVLAGDLNVAHNHIDVALPLT 943
E KPVV+ GD NVAH ID+ P
Sbjct: 134 EEGVLPADVPVQRPAPGEGHVCISELPLTQPGETAAPKPVVMCGDFNVAHQEIDLKNPGP 193
Query: 944 NLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFL 1001
N GK+GF+ +ER F++ L+ GF+D R L+P+ Y++W Y + GWR+DYFL
Sbjct: 194 NRGKAGFSDEERGKFTDLLEAGFVDTFRRLHPDVTGAYSWWSYRFKARQNNAGWRIDYFL 253
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+S+ L ++ I+ +V GSDH P L L L
Sbjct: 254 VSESLAPKVASACIYDEVYGSDHCPVGLELEL 285
>gi|20090923|ref|NP_616998.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina acetivorans
C2A]
gi|19916002|gb|AAM05478.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina acetivorans
C2A]
Length = 260
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 142/308 (46%), Gaps = 57/308 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
P N+ + SWNVNG+RA + K F + L+QK +V C+QE + EKLP
Sbjct: 2 PENYNLISWNVNGLRA--AMKKGFLDLLLEQK----------FDVICVQETKASPEKLPR 49
Query: 792 ----CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
P GYH ++ R GY+GV SK KP +V G ++ F+R
Sbjct: 50 EVKNIP-GYHNYFVSAERSGYSGVGTFSKQKPFKVETGMGIEE--------FDR------ 94
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LW 906
+GR + V+YE F L+N+Y P K L K+ +
Sbjct: 95 ------------------------EGRFLRVDYENFTLMNIYFPNGKASQERLEYKMSFY 130
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
++FL E K +V+ GD+N AH ID+A P N SGF +ER + F D G+
Sbjct: 131 DAFLDYANALKAEGKKLVICGDVNTAHREIDLARPKENETTSGFLPEERAWMDKFFDAGY 190
Query: 967 LDVHRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
LD R Y++W R + GWRLDYF +S+ L+ ++ I+ ++ GSDH
Sbjct: 191 LDTFRLFNSEGGNYSWWSLRTRARERNVGWRLDYFFVSENLRDNVKAAPIYPEITGSDHC 250
Query: 1026 PQILYLNL 1033
P L L
Sbjct: 251 PVGLELEF 258
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 141/302 (46%), Gaps = 55/302 (18%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGY 796
I SWNVNGIRA +KD F ++ ++ C+QE + ++ + E
Sbjct: 3 IVSWNVNGIRA------------AVKKDFFEAVKTMAPDILCLQETKAQDSEVAKALESL 50
Query: 797 HAFWF---PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
F ++GY+G A+LSK P+ T N G H ++
Sbjct: 51 SNFSLNSNSADKKGYSGTAILSKQAPISATP---------------NMGIEVHDTE---- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++ EY+ FYLVNVY P + + L L + W+ +
Sbjct: 92 -------------------GRILCTEYDSFYLVNVYVPNSGQKLDRLEYRQQWDKDFLAY 132
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLDLGFLDVHRH 972
LK+L + KPV+ GD NVAH ID+ N K +G+T E + NF+ F+D R
Sbjct: 133 LKNLEKKKPVIACGDFNVAHQAIDLKNDKANYNKTAGYTQIEIDGMDNFIANDFVDSFRA 192
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
L+P+ YT+W Y + + GWR+DYFL+SK + + + I+ D+ GSDH P + L
Sbjct: 193 LHPDEVAYTFWSYRFKSRERNTGWRIDYFLVSKAIADKIKKVTIYADIMGSDHCPIGITL 252
Query: 1032 NL 1033
++
Sbjct: 253 SI 254
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 60/305 (19%)
Query: 736 KIGSWNVNGIRAW-SQVNKLFTSIFLQQKDGFSFMR---QHDLNVFCIQEIRCPLEKLPE 791
K+ SWNVNG+RA + N+L +++G + R D +V C+QE + + +
Sbjct: 39 KVISWNVNGLRACMKRKNEL-------EEEGSALARLADSEDFDVLCLQETKLQEKDVEA 91
Query: 792 CPE----GY-HAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
+ GY ++FW T + GY+G A++S+ KP+ VT+G G ++
Sbjct: 92 IKQKILGGYSNSFWTCSTSKLGYSGCALISRIKPLSVTYGL---------------GISQ 136
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL 905
H + GRV+T E++ F+LV+VY P + + L L+ +
Sbjct: 137 HDGE-----------------------GRVVTAEFDTFFLVSVYVPNSGQRLERLTYRTT 173
Query: 906 -WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLD 963
W+ +L L + KPV++ GDLN AH ID+ P N +GFT +ER F +NF+D
Sbjct: 174 EWDPAFSTYLLELEKRKPVIVTGDLNCAHEEIDIYDPDGNKRSAGFTSEERTSFQTNFID 233
Query: 964 LGFLDVHRHLYPNHRIYTYWPYYD--RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
G +D R +P +TYW Y RP KGWRLDYFL+S+ L ++D + ++G
Sbjct: 234 KGLVDTFRKQHPLAVGFTYWSYRSNARPQN-KGWRLDYFLVSQGLVCSVADSYVLPQLDG 292
Query: 1022 SDHAP 1026
SDH P
Sbjct: 293 SDHCP 297
>gi|255513574|gb|EET89840.1| exodeoxyribonuclease III Xth [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 249
Score = 148 bits (373), Expect = 2e-32, Method: Composition-based stats.
Identities = 92/298 (30%), Positives = 138/298 (46%), Gaps = 60/298 (20%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE--GY 796
SWNVNGIRA +K + ++ QEI+ E +P+ + GY
Sbjct: 7 SWNVNGIRA-------------AEKSVVGLLESEKPDIIAFQEIKAGEESIPKGLKSLGY 53
Query: 797 HAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSH 856
+ R+GY+G V++K KP
Sbjct: 54 AMYVNSAARKGYSGTMVMTKIKP------------------------------------- 76
Query: 857 PELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS 916
I Y+ D+GRV +E++ +Y VN Y P ++ DLS L K+ ++ ++
Sbjct: 77 -----ISYSTEFEDDEGRVQRLEFDDYYFVNAYFPNSRRDLSRLEFKIKFDRDFEKYIGR 131
Query: 917 LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN 976
L KPV++ GD NVAH ID+A P N G +GFT +ER + + FL G LD R
Sbjct: 132 LEAKKPVLVCGDFNVAHKDIDIARPAENRGNAGFTDEEREWMTEFLGGGRLDTFRIFNKG 191
Query: 977 HRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YT+W Y+ + GWR+DYF+ SKQ++S + + I ++ GSDHAP +Y+ L
Sbjct: 192 AEHYTWWAYFSHARDRNIGWRIDYFVASKQMRSRIVNAGILSEIRGSDHAP--IYVTL 247
>gi|323144610|ref|ZP_08079198.1| exodeoxyribonuclease III [Succinatimonas hippei YIT 12066]
gi|322415619|gb|EFY06365.1| exodeoxyribonuclease III [Succinatimonas hippei YIT 12066]
Length = 268
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 154/318 (48%), Gaps = 69/318 (21%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC- 792
+ K+ SWNVNGIRA + K+ + + +V +QE + +E++PE
Sbjct: 2 DIKLASWNVNGIRA------------VSAKEDWKWFSDCGYDVISLQETKASVEQMPESI 49
Query: 793 --PEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
P GYHA++ ++GY+G AV SK +P+
Sbjct: 50 TDPVGYHAYFASSIVKKGYSGTAVFSKKEPL----------------------------- 80
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK------ 903
SH I+ D +GR++ +E+E+F+ N Y P D+ S K
Sbjct: 81 -----SH----EIELPDPEFQGEGRIVHLEFEKFHFFNGYFPNGGADILDESGKPTGEFK 131
Query: 904 ------LLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957
++SF + + + L E KP+V+ GD N+AHN ID+A P TN+ +GF ER +
Sbjct: 132 RVPYKMAFFDSFFK-YAQKLRESKPIVVCGDFNIAHNEIDLARPKTNVKNTGFLPLERAF 190
Query: 958 FSNFLDLGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEI 1015
F+ G++D R ++ + + YT+W Y R +K GWR+DYF +S++LK ++ D I
Sbjct: 191 LDKFVAAGYIDTFRFVHGDLKDQYTWWSYKTRARAKNVGWRIDYFFVSEELKENIKDAWI 250
Query: 1016 HGDVEGSDHAPQILYLNL 1033
DV GSDH P L L+
Sbjct: 251 ENDVFGSDHCPIGLCLSF 268
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 147 bits (372), Expect = 2e-32, Method: Composition-based stats.
Identities = 95/303 (31%), Positives = 144/303 (47%), Gaps = 55/303 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---EC 792
KI SWNVNGIRA + K + + D + +QE + +++ E
Sbjct: 2 KIISWNVNGIRA------------VMGKGFAESLEKLDADCILLQETKAQDDQVQTALES 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+ YH + R+GY+GVA+L+K +P+++ G +EH +
Sbjct: 50 IDSYHIYSNSAGRKGYSGVALLTKQEPIQILQDI---------------GIDEHDQE--- 91
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
GRV+ E+E F L+NVY P + E L L + +W+ L
Sbjct: 92 --------------------GRVIAAEFENFILLNVYVPNSGEKLVRLDYRKIWDKELLA 131
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVHR 971
+ + LN KP++ GD NVAH ID+A P N KS G+T E + S L+ GF+D R
Sbjct: 132 YFQQLNSRKPLIACGDFNVAHQEIDIARPKANYNKSAGYTQTEIDGISRMLEAGFVDTFR 191
Query: 972 HLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
HL+P Y++W Y +K GWR+DY L S+ L + + I D+ GSDH P +
Sbjct: 192 HLHPETVAYSWWSYRAGARAKNIGWRIDYVLTSQALIGKVKNAFIAPDIFGSDHCPVGIE 251
Query: 1031 LNL 1033
++L
Sbjct: 252 IDL 254
>gi|290559315|gb|EFD92650.1| exodeoxyribonuclease III [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 251
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 146/300 (48%), Gaps = 53/300 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNG+++ + N++ QK+ + IQE + E + +
Sbjct: 2 KIMSWNVNGLKSVIRKNEI-------QKE----LESDIYGAILIQETKTN-EIIDTLGKD 49
Query: 796 YHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
Y ++ T ++GY+GV SK KP+ V +G + F+R
Sbjct: 50 YFKYYISATSKKGYSGVMTFSKNKPLNVIYG--------IKNEQFDR------------- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+GR +T+E++ ++L+N Y P ++ DLS L K+ +N + +
Sbjct: 89 -----------------EGRTLTLEFKDYFLINAYFPNSRRDLSRLDYKIKFNKSILKFM 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
++L KPV++ GD NVAHN ID+A P +N G +GFT ER + + G++D R
Sbjct: 132 QALRRKKPVIIGGDFNVAHNEIDIARPKSNQGNAGFTSVERKFIDEMIKKGYIDTFRIFN 191
Query: 975 PNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ YT+W Y + ++ GWR+DY +S +LK + D I + GSDHAP + LN
Sbjct: 192 KENGNYTWWTYLYKSARTNNIGWRIDYLFVSNELKKRVKDAGIIKNKIGSDHAPVYIELN 251
>gi|196014285|ref|XP_002117002.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
gi|190580493|gb|EDV20576.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
Length = 281
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 141/305 (46%), Gaps = 91/305 (29%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
WN KI SWNVNGI+AW + K+G S++ ++++ C+QE +C ++P
Sbjct: 64 WNTKITSWNVNGIKAWFK------------KNGHSYLTDSNIDIICLQETKCAESEIPNE 111
Query: 792 -CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+GYH +++ ++GY+ +LSK KP++VT G + ++H + +D+
Sbjct: 112 IKLDGYHTYFYSAEQKGYSSTGLLSKVKPLKVTFGIT---NIILHI--------KFRTDI 160
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
E H + +GRV+T EY++F+LV Y
Sbjct: 161 EK---HDK-------------EGRVITAEYDKFFLVGAY--------------------- 183
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+A P TN +GFT +ER F LD GF+D
Sbjct: 184 ---------------------------LANPKTNTKTAGFTKEEREGFGKLLDCGFIDTF 216
Query: 971 RHLYPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
RH YPN Y++W Y SK GWRLDYF+ SK L +++D I ++EGSDH P
Sbjct: 217 RHFYPNKTSAYSFWSYMSNARSKNIGWRLDYFVTSKNLIPNVADSIIRSEIEGSDHCPIE 276
Query: 1029 LYLNL 1033
L L +
Sbjct: 277 LLLQI 281
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 147 bits (371), Expect = 3e-32, Method: Composition-based stats.
Identities = 95/296 (32%), Positives = 138/296 (46%), Gaps = 55/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
K+ SWNVNG+RA + +K +M + D +V C+QE + +
Sbjct: 2 KLVSWNVNGVRA------------VLKKGFLDYMGKVDADVICLQETKAHPGDVQHVAWT 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY W+ ++GY+G A+ ++ P++V G +
Sbjct: 50 AGYTPHWYSAVKKGYSGTALFTRVAPLKVNFGIGL------------------------- 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRG 912
P H D+GRV+T E+ F+LVNVY P ++ L+ L + W+
Sbjct: 85 PGHD-------------DEGRVITAEFADFFLVNVYQPNSQRGLTRLKYRTEEWDPAFLA 131
Query: 913 HLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
LK L + KPVV GDLNVAH ID+ P TN +GFT +ER FS L GF+D R
Sbjct: 132 FLKKLEKKGKPVVFCGDLNVAHQEIDLTNPKTNRRNAGFTDEERANFSKLLASGFVDTFR 191
Query: 972 HLYPNHRIYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YT+W + ++ GWR+DYF+ S++LK L I +V GSDH P
Sbjct: 192 EFEKGPGHYTWWSQMMNCRARNIGWRVDYFVASEKLKPALKRAWISPEVMGSDHCP 247
>gi|146304199|ref|YP_001191515.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
gi|145702449|gb|ABP95591.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
Length = 248
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 146/304 (48%), Gaps = 63/304 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIR-----CPLEKLP 790
KI SWNVNG++A + K +++ + ++ QE++ + LP
Sbjct: 2 KILSWNVNGLKA------------ILGKGLLDLVKKQEYDILMFQEVKSSQLPIDFQLLP 49
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
Y ++ +P ++GY+G L++ +P+ +G G E S+
Sbjct: 50 -----YRSYLYPAKKKGYSGTLTLTRIEPISAKYGI---------------GDEEFDSE- 88
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GRV+ +E+++ Y++NVY P A E+L L KL +N
Sbjct: 89 ----------------------GRVIALEFQKVYVINVYFPNAGEELKRLDFKLRFNQRF 126
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+K+L KP V+ GD NVAH ID+A P N+ +GFT +ER +F FL GF+D
Sbjct: 127 HEFVKNLG--KPCVICGDFNVAHEEIDIARPKDNVNHAGFTPEERKWFHEFLASGFVDTF 184
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R Y++W Y + K GWR+DY ++SK+L+ H+ EI V GSDHAP L
Sbjct: 185 RIFVKEGGHYSWWSYRFHAREKNIGWRIDYCVVSKELEKHVKKAEILEKVMGSDHAPVTL 244
Query: 1030 YLNL 1033
L++
Sbjct: 245 ELDI 248
>gi|325845494|ref|ZP_08168785.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
gi|325488513|gb|EGC90931.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
Length = 215
Score = 147 bits (371), Expect = 3e-32, Method: Composition-based stats.
Identities = 84/262 (32%), Positives = 127/262 (48%), Gaps = 53/262 (20%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA K GF F+ + C+QE + ++ +
Sbjct: 2 KFISWNVNGLRACV-------------KKGFLDFVEAEQPDFLCVQETKLQEGQIDLQLD 48
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY+ +W ++GY+G A+ +K +P++VT+G ++ EH +
Sbjct: 49 GYYQYWNYAVKKGYSGTAIFTKHEPLQVTYGLNIA---------------EHDQE----- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+EY FYLV VY P ++ +L+ L +L W R +L
Sbjct: 89 ------------------GRVITLEYNDFYLVTVYTPNSQNELARLDYRLTWEEAFRNYL 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L+ +KPV++ GDLNVAH ID+ P TN +GFTI+ERN + L+ GF+D R+ Y
Sbjct: 131 IGLDVLKPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSGFIDTFRYFY 190
Query: 975 PN-HRIYTYWPYYDRPSKMKGW 995
P Y++W Y K W
Sbjct: 191 PTKENCYSWWSYRAGARAKKRW 212
>gi|145511051|ref|XP_001441453.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408703|emb|CAK74056.1| unnamed protein product [Paramecium tetraurelia]
Length = 374
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 149/309 (48%), Gaps = 66/309 (21%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK------ 788
KI SWN+NG+RA S+ ++ S++ + ++ C+ E++ E
Sbjct: 105 LKISSWNINGLRASSK-----------KESAVSYLNDKNFDIICLNELKVAQEAFEKENL 153
Query: 789 LPECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
+ + P+ Y A+ F + GY+GVA+LSK KP+ + ++ G +H
Sbjct: 154 ITKLPKDYFAYLNFCKIKAGYSGVAILSKVKPISIK---------------YDMGIEKHD 198
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-W 906
+ GR++T E+E+F LV Y P + + L L+ + W
Sbjct: 199 QE-----------------------GRIITAEFEKFNLVACYVPNSGDKLDRLNYRTQEW 235
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG--------FTIQERNYF 958
+ + +L L + K ++ GDLNV+H ID+A P N +G FT +ER+ F
Sbjct: 236 DVDFQNYLDKLKQTKNTIICGDLNVSHTEIDLANPEGNKRSAGQLIIYDQRFTQEERDSF 295
Query: 959 SNFLDLGFLDVHRHLYPNHRIYTYW-PYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHG 1017
S FL G++D RHL+P Y+Y+ P ++ KGWR+DYF+++++ + +I
Sbjct: 296 SKFLSKGWIDTFRHLHPKEIKYSYFSPRFNSRETNKGWRIDYFVVNQEAVGSVIQSDIKT 355
Query: 1018 DVEGSDHAP 1026
+ GSDH P
Sbjct: 356 TILGSDHVP 364
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 147 bits (370), Expect = 4e-32, Method: Composition-based stats.
Identities = 94/295 (31%), Positives = 137/295 (46%), Gaps = 54/295 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
K+ SWNVNGIRA +++K M+ D +V C+QE + E+L +
Sbjct: 4 KLISWNVNGIRA------------VEKKGFVDLMQSWDADVICLQETKAHKEQLSDELIN 51
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
Y ++W G ++GY+ VA+ S+ +P+RV G ++ F+R
Sbjct: 52 IGNYTSYWHSGEKKGYSSVAIYSRIEPIRVIEGLGIE--------EFDR----------- 92
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GRV+ EY FYL VY P A+ +L + +L + L
Sbjct: 93 -------------------EGRVIIAEYSDFYLFGVYFPNAQAELKRIDYRLEFGDALIE 133
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
LK K VL GD NVAH ID+ P N G++IQERN+ FL G +D R
Sbjct: 134 QLKEKYSDKACVLCGDFNVAHKAIDLKNPKANEKNPGYSIQERNWMDKFLAAGHVDTFRM 193
Query: 973 LYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
N Y++W Y S+ GWR+DYF +S+ + + D I +V GSDH P
Sbjct: 194 FNQNPDEYSWWSYRGGARSRNVGWRIDYFCVSESARDRVLDAGIMQEVLGSDHCP 248
>gi|124010283|ref|ZP_01694936.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
gi|123983668|gb|EAY24108.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
Length = 259
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 55/303 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
KI S+NVNGIRA +K +++ D +V CIQE++ LE+ + E
Sbjct: 1 MKIISYNVNGIRA------------AIRKGLVEWLKAADCDVLCIQELKA-LEEQVDTAE 47
Query: 795 ----GYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
GYH +W P TR+GY+GVA+ S+ KP V +G+
Sbjct: 48 LEALGYHLYWQPAQTRKGYSGVAIFSRIKPNNVVYGYG---------------------- 85
Query: 850 MESGPSHPELTTIQYADASGIDD-GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
+ D IDD GR++ +Y+ F +++VY P+ + ++ K+ WN
Sbjct: 86 -----------DYDWHDTRWIDDEGRIIRADYDNFSVMSVYMPSGTKPERVV-FKMEWNL 133
Query: 909 FLRGHLKSLNEIKP-VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+ ++ L ++ P +++ GD N+AH ID+ P +N +SGF +ERN+ ++F++LGF
Sbjct: 134 AFQQYITELKKVVPHLIICGDYNIAHQAIDIHNPKSNAKRSGFLPEERNWLTDFMELGFT 193
Query: 968 DVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
D R+L P YT+W + +K GWR+DY +ISK L +L I + SDH P
Sbjct: 194 DSFRYLNPEPHNYTWWNVRTNARAKNLGWRIDYQMISKSLNENLKRAVILSEAMHSDHCP 253
Query: 1027 QIL 1029
++
Sbjct: 254 ILI 256
>gi|257076437|ref|ZP_05570798.1| exodeoxyribonuclease III [Ferroplasma acidarmanus fer1]
Length = 252
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 144/300 (48%), Gaps = 53/300 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--C 792
KI SWNVNGIRA + + T + + ++ +QE + +PE
Sbjct: 1 MKILSWNVNGIRAAVKNGIIKT------------LENENPDIILLQEAKADKMDIPEELH 48
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY + P ++GY+G ++K +P+ T G+ E+ D+E
Sbjct: 49 HTGYKIYVNPADKKGYSGTMAMAKQEPLSYT-----------------TGTGENNKDVE- 90
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
GR+ T+EY+ FYL+N Y P ++ L+ L K+ +N +
Sbjct: 91 --------------------GRIQTLEYDNFYLINSYFPNSQHGLTRLDYKIQFNREILE 130
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
++ L KPV++ GD NVAH ID+A P N +GFTI+ER+ + L G++D +R+
Sbjct: 131 YMDKLKAKKPVIITGDFNVAHEEIDIARPKGNEKNAGFTIEERDSMTEILSHGYVDTYRY 190
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y ++ K GWR+DYFL+S + D I +V GSDHAP L L
Sbjct: 191 FHKEPGHYSWWSYRFNAREKNIGWRIDYFLVSDNFIGKVEDSLILENVTGSDHAPLELIL 250
>gi|307596055|ref|YP_003902372.1| exodeoxyribonuclease III Xth [Vulcanisaeta distributa DSM 14429]
gi|307551256|gb|ADN51321.1| exodeoxyribonuclease III Xth [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 146 bits (369), Expect = 5e-32, Method: Composition-based stats.
Identities = 97/298 (32%), Positives = 146/298 (48%), Gaps = 55/298 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLE-KLPECPE 794
+I SWNVNG+R+ + L D M +D V +QEIR + L
Sbjct: 2 RIVSWNVNGLRSIMRKGSL---------DRLLSMGNYD--VVLLQEIRSSGDVPLTIMGL 50
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GY A+ FP R+GYAGV L+K KP+ V G +K
Sbjct: 51 GYEAYPFPAERKGYAGVMTLTKVKPISVIKGLGIK------------------------- 85
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
DA +GRV+TVE+ +FY+VN Y P A +DLS L K+ + + L
Sbjct: 86 ---------EFDA----EGRVITVEFNEFYVVNAYFPRAGDDLSRLGFKISFCGAIEKFL 132
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L KPV++ GD N+A + +D + + G T +ER + S + GF+D R L+
Sbjct: 133 NELRSRKPVIVCGDFNIARDRLDSS--FWDEKHPGLTPEERAWLSQLIKDGFIDAFRELH 190
Query: 975 PNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
PN R++T+ Y +R M R+DY ++S++L+ + E+ DVEGSDH P ++ ++
Sbjct: 191 PNARVFTWRSYKERWRAM---RIDYCMVSEELRGKVIKAEVLSDVEGSDHVPVMIEIS 245
>gi|325967886|ref|YP_004244078.1| exonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323707089|gb|ADY00576.1| exonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 147/296 (49%), Gaps = 55/296 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLE-KLPECP 793
+I SWN+NG+R+ + + L D M +D+ + +QEIR + L
Sbjct: 1 MRIVSWNINGLRSIMRKSSL---------DKLLSMDNYDMVL--LQEIRSSGDIPLTIIG 49
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY A+ FP R+GYAGV L+K P+ V G G NE S+
Sbjct: 50 LGYEAYPFPAIRKGYAGVMTLTKIHPISVIKGI---------------GINELDSE---- 90
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++TVE+ FY+VN Y P A +DLS L KL + +
Sbjct: 91 -------------------GRIITVEFNDFYVVNTYFPRAGDDLSRLDFKLSFCGAIEKF 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L +L KP+++ GD N+A + ID + + G T++ER + + FL G++D R L
Sbjct: 132 LANLRSKKPIIMCGDFNIARDKIDSS--FWDEKHPGLTLEERAWLNQFLKSGYIDTFREL 189
Query: 974 YPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
+PN ++YT+ Y + K + R+DY ++SK+L S + EI ++EGSDH P ++
Sbjct: 190 HPNAKVYTWHSYRE---KWRAMRIDYCIVSKELMSKVRKAEILTNIEGSDHVPVMI 242
>gi|268569472|ref|XP_002640531.1| C. briggsae CBR-EXO-3 protein [Caenorhabditis briggsae]
Length = 290
Score = 146 bits (369), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 144/311 (46%), Gaps = 60/311 (19%)
Query: 730 QYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC---PL 786
Q W F WNV G+RA +K FS + + ++ + E +C P
Sbjct: 33 QKSWKFV--CWNVAGLRA------------CVKKSDFSEILKEQPDIVFLGETKCKEWPN 78
Query: 787 EKLPECPEGYHAFWFPGTRQ--GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSN 844
E + E + Y T + GYAGV +LSK P+++ G
Sbjct: 79 E-IEEKFKDYSKTLVISTEKNGGYAGVGMLSKVAPLKIHKGIG----------------- 120
Query: 845 EHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL 904
PE T GR++ E+ +F+ V Y P + L L +
Sbjct: 121 -----------DPEFDTA----------GRLIIAEFVEFFFVGSYVPNSGAKLVNLEKRG 159
Query: 905 LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFLD 963
W + L LKS+ KPV+ GDLNVAH ID+ P +N K +GFT QER +F+ L+
Sbjct: 160 RWEALLTEKLKSMTMTKPVIYGGDLNVAHEEIDLKNPESNRNKTAGFTDQERGWFTEMLE 219
Query: 964 LGFLDVHRHLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGS 1022
+GF D R ++P + YT+W Y + K GWRLDY+++S ++ + EI DV+GS
Sbjct: 220 MGFTDTFRKMHPEEKKYTFWSYLANAREKDVGWRLDYYVVSDRIMEKVKKSEIMSDVKGS 279
Query: 1023 DHAPQILYLNL 1033
DHAP +L++
Sbjct: 280 DHAPIVLHIEF 290
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 135/277 (48%), Gaps = 51/277 (18%)
Query: 768 FMRQHDLNVFCIQEIRCPLEKLPECP-------EGYHAFWFPGT--RQGYAGVAVLSKTK 818
+ D ++ C+QE + + C + +H F+F + ++GY+GVAVLS+ K
Sbjct: 4 LINSEDADILCLQETKLKDSDVAACEKLLRPGLQDWH-FYFNNSIAKKGYSGVAVLSRAK 62
Query: 819 PVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTV 878
P+ VT+G G +H D E GRV+T
Sbjct: 63 PLSVTNGL---------------GKEDH--DQE---------------------GRVITA 84
Query: 879 EYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHID 937
EY FY+VNVY P + E L L ++ W+ +L L KPV+L GDLN AH ID
Sbjct: 85 EYPSFYVVNVYVPNSGEGLKRLEYRVGSWDVAFADYLAGLGAKKPVILTGDLNCAHQEID 144
Query: 938 VALPLTNLGKSGFTIQERNYFS-NFLDLGFLDVHRHLYPNHRIYTYWPYYDRPS-KMKGW 995
+ P NL +GFT +ER FS L GF D R YP+ YTYW Y + +GW
Sbjct: 145 IHDPKRNLKSAGFTEEERKSFSAQLLQRGFKDTFREKYPDVVGYTYWNYRTGARVRNRGW 204
Query: 996 RLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
RLDYFL+S+ L + D+ DV+GSDH P L L+
Sbjct: 205 RLDYFLVSEALAERVHDIFHLPDVQGSDHCPVGLVLH 241
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
Length = 257
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 140/299 (46%), Gaps = 59/299 (19%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+I SWNVNG+RA + +K FM++ + ++ C+QE R E+LP PE
Sbjct: 4 LEILSWNVNGLRA------------ILKKGFVDFMQEKNPDILCLQETRASEEQLP--PE 49
Query: 795 -----GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
GYH ++ G ++GY+GVA+LSK KP+ V GF +
Sbjct: 50 IMTSWGYHVYFASGEKKGYSGVAILSKVKPLSVARGFGI--------------------- 88
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNS 908
PE +GRV+ +Y F L+N+Y P K L+ K+ +N+
Sbjct: 89 -------PEFDR----------EGRVLIADYGAFVLLNIYFPNGKASPERLAYKMRFYNA 131
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
FL + + + +V+ GD+N AH ID+A P N SGF ER + + G++D
Sbjct: 132 FLEYADRLKAQGRKIVVCGDVNTAHKEIDIARPRENSKISGFLPVERAWMDKLIAHGYVD 191
Query: 969 VHRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R YT+W R + GWR+DYF +S+ LK L I ++ GSDH P
Sbjct: 192 TFRLFNDQPGQYTFWDTVTRARERNVGWRIDYFFVSENLKEQLKAAFIMTEIMGSDHCP 250
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 146 bits (368), Expect = 7e-32, Method: Composition-based stats.
Identities = 92/296 (31%), Positives = 140/296 (47%), Gaps = 55/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPEC 792
KI SWNVNG+RA +Q K + D + +QE + ++K E
Sbjct: 2 KIISWNVNGVRA------------VQSKGFAETLALLDADCILLQETKAQADQIDKALEG 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+GY + R+GY+GV +LS+ +P++V +G V H
Sbjct: 50 IDGYRVYSNCAERKGYSGVTILSRKEPLQVIS----DIGIVEHDR--------------- 90
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GRV+ E+E F+L+NVY P + E L+ L + W+
Sbjct: 91 -------------------EGRVIVAEFENFFLLNVYVPNSGEALARLDYRQTWDIEFLA 131
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVHR 971
+ + L + KP++ GD NVAH ID+A P N KS G+T E + FS FLD G +D R
Sbjct: 132 YCRQLQKKKPLIACGDFNVAHQEIDIARPKPNYNKSAGYTQVEIDGFSRFLDAGLVDTFR 191
Query: 972 HLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H +P+ Y++W + ++ GWR+DY L SK L ++ I ++ GSDH P
Sbjct: 192 HFHPDTVAYSWWSFRGGARARNVGWRIDYVLTSKTLAGNVKQAFILPEISGSDHCP 247
>gi|71989536|ref|NP_001021584.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3879014|emb|CAB03235.1| Protein EXO-3, isoform a [Caenorhabditis elegans]
gi|3941298|gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans]
Length = 288
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 145/312 (46%), Gaps = 60/312 (19%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
+Q W F WNV G+RA +K F + + ++ + E +C E
Sbjct: 30 NQKSWKFV--CWNVAGLRA------------CVKKSDFKEVLAEEPDLVFLGETKCK-EW 74
Query: 789 LPECPEGYHAF---WFPGTRQ--GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGS 843
PE E + + T + GYAGV +LSK P++V G
Sbjct: 75 PPEMEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIG---------------- 118
Query: 844 NEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK 903
PE T GR++ E+ +FY + Y P + L L +
Sbjct: 119 ------------DPEFDTA----------GRLIIAEFSKFYFIGAYVPNSGAKLVNLEKR 156
Query: 904 LLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK-SGFTIQERNYFSNFL 962
W L +K ++E KPV+ GDLNVAHN ID+ P +N K +GFT QER +FS L
Sbjct: 157 GRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWFSEML 216
Query: 963 DLGFLDVHRHLYPNHRIYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG 1021
+LGF D R ++P+ + Y++W Y + K GWRLDY+++S ++ + + +I V G
Sbjct: 217 ELGFTDTFRAMHPDEKKYSFWSYLANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMSSVMG 276
Query: 1022 SDHAPQILYLNL 1033
SDHAP ++ ++
Sbjct: 277 SDHAPVVMQIDF 288
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
Length = 254
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 145/296 (48%), Gaps = 55/296 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
+I SWNVNGIRA + +K ++ + +V +QEIR E+L +
Sbjct: 2 RIYSWNVNGIRA------------VNRKGFLDWIEEEKPDVLALQEIRIQPEQLKDKLKN 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+GYH+++ G + GY+GVA+ SK +P+ V GF G R E
Sbjct: 50 IDGYHSYFNYGEKAGYSGVAIYSKEEPLDVWKGF-----------GIERFDYE------- 91
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLR 911
GRV+ EY +FYL+N+Y P K L+ KL +++ L
Sbjct: 92 --------------------GRVIAAEYPEFYLLNIYFPNGKSSKERLNYKLDFYDATLE 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+ E K VV++GD N AH+ +D+ P N SGF ER + + GF+D +R
Sbjct: 132 YAEELREEGKGVVVSGDYNTAHHPLDLKNPDANKNTSGFLEIEREWLDKLENHGFIDTYR 191
Query: 972 HLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YP+ Y++W Y R + GWR+DY IS++L+ +L+ +I DV GSDH P
Sbjct: 192 YFYPDKETYSWWSYRTRARERNAGWRIDYHFISEELEDNLNHSDILTDVMGSDHCP 247
>gi|413952188|gb|AFW84837.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 516
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/347 (29%), Positives = 161/347 (46%), Gaps = 90/347 (25%)
Query: 714 DFNDPFRILEHKRRQDQY-PWN---------------FKIGSWNVNGIRAWSQVNKLFTS 757
D ++P+ IL HK+ Q + P+N KI SWNVNG++A
Sbjct: 233 DDSEPWTILVHKKPQASWIPYNPRTMRPPPLSKDTRALKIMSWNVNGLKA---------- 282
Query: 758 IFLQQKDGFS---FMRQHDLNVFCIQEIRCP---LEKLPECP-EGY-HAFWFPG-TRQGY 808
L + GFS ++ D +V C+QE + +E + + +GY ++FW ++ GY
Sbjct: 283 --LLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLLDGYTNSFWTCSVSKLGY 340
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868
+G A++S+ KP+ + +G G ++H ++
Sbjct: 341 SGTAIISRVKPLSIKYGL---------------GISDHDTE------------------- 366
Query: 869 GIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAG 927
GRV+TVE++ FYL+ Y P + + L L+ ++ W+ L ++K L + KPV+L G
Sbjct: 367 ----GRVVTVEFDDFYLLTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTG 422
Query: 928 DLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYY 986
DLN AH ID+ P N +GFT +ER F +NFL GF+D R +PN Y+YW Y
Sbjct: 423 DLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFVDTFRKQHPNVVAYSYWGYR 482
Query: 987 DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
K K + D I D+ SDH+P L L L
Sbjct: 483 HNARKTN-------------KEKVHDSYILPDISASDHSPLGLVLKL 516
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 139/299 (46%), Gaps = 56/299 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--- 792
+I SWNVNGIRA Q+K +M Q +V C+QE + E+L E
Sbjct: 8 RIASWNVNGIRA------------AQKKGLLEYMMQEHADVVCLQETKAKPEQLDEQLLN 55
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
P Y +++ R GY+GVAV S+ KP+ V+
Sbjct: 56 PSDYRSYFSSAERGGYSGVAVYSRKKPLSVSP---------------------------- 87
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
I DA +GR + VE+ F L+N Y P ++ + + L KL + +
Sbjct: 88 -------LGIAEFDA----EGRALLVEFSDFVLINGYFPNSQSEGARLDYKLAYCDAILK 136
Query: 913 HLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
SL E + VV+ GD N+AH ID+A P N G GF +ER + S+FLD G+ D R
Sbjct: 137 RCNSLVGEGRHVVVCGDYNIAHKPIDLARPKENEGNPGFLPEERAWMSSFLDAGYTDTFR 196
Query: 972 HLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YT+W Y + + GWRLDYF K+ ++ + + EI +V GSDH P +L
Sbjct: 197 IFNNEGGNYTWWSYRTKGRERNVGWRLDYFCTDKEFENRVKNSEIRSEVMGSDHCPVVL 255
>gi|407039177|gb|EKE39497.1| exodeoxyribonuclease III protein [Entamoeba nuttalli P19]
Length = 319
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 45/268 (16%)
Query: 768 FMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGF 826
F+++ + ++ C+QE + + + +GYH ++ T ++GYAG A+LSK +P+ +T
Sbjct: 91 FIKEENPDILCVQETKLQ-DGVNPMIDGYHCYFSASTAKKGYAGTAILSKEEPLSITK-- 147
Query: 827 SMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLV 886
K+ G NEH GR++TVEYE+FYLV
Sbjct: 148 --KING---------KENEH--------------------------GRIITVEYEKFYLV 170
Query: 887 NVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
N Y + + L L + W+ +R HLK L + K V+ GDLNVA IDVA P+T L
Sbjct: 171 NSYVMNSGQRLENLVKRTTEWDKDMREHLKELQKKKNVIWCGDLNVALRWIDVAKPMTRL 230
Query: 946 GKSGFTIQERNYFSNFL-DLGFLDVHRHLYPNHR-IYTYWPYYDRPSKMKGWRLDYFLIS 1003
+GFT +ER S L +L +D + YP R YT++ Y D+ SK GWRLDYF +S
Sbjct: 231 RCAGFTKEERASTSETLKELNLVDTFQVKYPKKRDFYTFFSYKDK-SKTAGWRLDYFFVS 289
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
K L ++ + ++ SDH P I+++
Sbjct: 290 KDLVDSVTQIYRRKEISASDHVPLIIHI 317
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 41/229 (17%)
Query: 805 RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQY 864
++ Y+G A+ +K+KP++VT+G
Sbjct: 4 KKDYSGTAIFTKSKPLKVTYGM-------------------------------------- 25
Query: 865 ADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVV 924
D +GR++T+E+ FY+V +Y P +K DLS L +L W ++G+L LN+ KPV+
Sbjct: 26 -DEERNSEGRMITLEFSDFYVVTMYTPNSKRDLSRLEERLEWEDLVQGYLDKLNQKKPVI 84
Query: 925 LAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYW 983
GDLNVAH +DV N G SGFT ER + LDLGF D +R+ P +T+W
Sbjct: 85 FCGDLNVAHTELDVKNDRANQGNSGFTQVEREKMNGLLDLGFTDTYRYFNPARDDQFTWW 144
Query: 984 PYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
Y + GWR+DYF++S + +S+ +IH V GSDH P +L L
Sbjct: 145 SYMKGVRERNIGWRIDYFIVSTSFMNTISNSDIHDHVYGSDHCPIVLEL 193
>gi|254445623|ref|ZP_05059099.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
gi|198259931|gb|EDY84239.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
Length = 251
Score = 145 bits (365), Expect = 1e-31, Method: Composition-based stats.
Identities = 90/294 (30%), Positives = 136/294 (46%), Gaps = 53/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNGIRA + +K F D + C+QE + + + + G
Sbjct: 2 KFVSWNVNGIRA------------IMKKGAMDFFDGCDADFICLQETKATADIVKDFDWG 49
Query: 796 YHAFWFP--GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
++GY+G A++++T+P V++G G +H +
Sbjct: 50 VSKTVLANEAEKKGYSGTAIIARTEPESVSYGI---------------GIEKHDGE---- 90
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GRV+T EY +F++V VY P A+ +L L + W+ +
Sbjct: 91 -------------------GRVVTAEYPEFFIVTVYTPNAQNELRRLPYRQEWDRDFLAY 131
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+K+L KPV+ GDLNVAH D+A P TN +GFT +ER F + + GF+D R
Sbjct: 132 VKALEATKPVIFCGDLNVAHTEDDLANPKTNRKNAGFTDEERAGFDDIVAAGFVDTFREF 191
Query: 974 YPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
Y++W Y S+ GWR+DYF+IS+ L+ L I +V GSDH P
Sbjct: 192 TQGKGHYSWWSYRGGARSRNVGWRIDYFMISESLRPQLKSASILPEVLGSDHCP 245
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 136/265 (51%), Gaps = 52/265 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA V K F F + D ++FC+QE + ++
Sbjct: 2 KLISWNVNGLRA--AVKKGFLEYF----------EEVDADIFCLQETKLQEGQIELDLPA 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y +W ++GY+G A+ +K +P+ V +G G EH ++
Sbjct: 50 YKDYWNYAVKKGYSGTAIFTKVEPLSVQYGL---------------GVPEHDTE------ 88
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
GRV+T+E+E+F++V VY P ++ +L L ++ + + ++K
Sbjct: 89 -----------------GRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYVK 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+L++ KPVVL GDLNVAH ID+ P TN +GF+ +ER FS FLD GF+D R+ YP
Sbjct: 132 NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYP 191
Query: 976 NHR-IYTYWPY-YDRPSKMKGWRLD 998
+ Y++W Y + ++ GWR+D
Sbjct: 192 DLTDAYSWWSYRMNARARNTGWRID 216
>gi|407016220|gb|EKE29973.1| Exodeoxyribonuclease III Xth [uncultured bacterium (gcode 4)]
Length = 255
Score = 144 bits (364), Expect = 2e-31, Method: Composition-based stats.
Identities = 93/297 (31%), Positives = 138/297 (46%), Gaps = 56/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
K SWNVN IRA QK ++ ++ +QE++ ++ P +
Sbjct: 2 KFISWNVNWIRA------------AIQKGFLDYINNEKPDIIALQEVKATEDQFPARMDM 49
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
Y +W ++ Y+ AV +K KP+ V++ M+ EH ++
Sbjct: 50 EMMWYSVYWNSASKNWYSWTAVFTKEKPLSVSYWLWME---------------EHDNEW- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
R++TVEYE+FY V VY P +K +L L + LW+S
Sbjct: 94 ----------------------RIITVEYEKFYFVTVYTPNSKRELERLEYRQLWDSLFL 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
H++ L IKP+ + DLNVAH ID+ P N + FT +ER F FLD GF+D R
Sbjct: 132 DHMRRLEAIKPIFVCWDLNVAHKEIDLTNPKPNRWNAWFTDEERMGFQKFLDAGFIDTFR 191
Query: 972 HLYPNHR-IYTYWP-YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP+ Y++W + + S+ GWR+DYFL S LK +L + I GSDH P
Sbjct: 192 FFYPDKAGEYSWWSNFANARSRNIGWRIDYFLASWILKENLKNAFIMQQTLGSDHCP 248
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 144 bits (364), Expect = 2e-31, Method: Composition-based stats.
Identities = 92/294 (31%), Positives = 135/294 (45%), Gaps = 54/294 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG+RA V K F F + F F IQE + ++ G
Sbjct: 2 KFISWNVNGLRAI--VKKGFVETFQELNADF----------FGIQETKLQAGQIELDLPG 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W R+GY+G A+ +K +P+ V +G
Sbjct: 50 YYQYWNYAERKGYSGTALFTKHQPLNVIYGI----------------------------- 80
Query: 856 HPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
DA D +GR +T+EY FY++ Y P + L L +L W +
Sbjct: 81 ----------DAPEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDFRLGWEHAFLTFI 130
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
+ L+ KPV+ GDLNVAH ID+ P TN +GFT +ER + L G+ D R+
Sbjct: 131 QKLDAQKPVIFCGDLNVAHTEIDLKNPKTNHHNAGFTDEERAKMTALLAAGYTDTFRYFN 190
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
P+ Y++W Y + GWR+DYF+ S++L++HL D +I + GSDH P
Sbjct: 191 PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKILDQIMGSDHCP 244
>gi|429216366|ref|YP_007174356.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
gi|429132895|gb|AFZ69907.1| exodeoxyribonuclease III [Caldisphaera lagunensis DSM 15908]
Length = 245
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 59/299 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
KI +WNVNG+R S ++K L + ++ QEI+ + +P+ +
Sbjct: 2 KILTWNVNGLR--SVLSKGLPKELL------------NFDIIMFQEIKT--DTIPDELQN 45
Query: 795 -GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
GY + +P R+GYAG ++K KP V G G+ E S+
Sbjct: 46 LGYEIYIYPAKRKGYAGTLTMTKIKPKNVLFGI---------------GNEEFDSE---- 86
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR +T+E+++FY++N Y P A+ L+ L KL +NS +
Sbjct: 87 -------------------GRNITLEFDEFYVINSYFPNAQHGLTRLDYKLSFNSQMEKF 127
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
L SL KP ++ GD NVAH ID+A P N+ GFT QER++ ++FL+LG++D R
Sbjct: 128 LSSLK--KPKIICGDFNVAHKEIDIARPKDNVNNPGFTQQERDWMTHFLELGYIDAFRIF 185
Query: 974 YPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
+ Y++W Y + K GWR+DY ++S + + D +I + GSDHAP L +
Sbjct: 186 HKEPNRYSWWSYRFHAREKNIGWRIDYCVVSSDIVKRVKDCDIMDKIMGSDHAPVYLII 244
>gi|451947339|ref|YP_007467934.1| exodeoxyribonuclease III [Desulfocapsa sulfexigens DSM 10523]
gi|451906687|gb|AGF78281.1| exodeoxyribonuclease III [Desulfocapsa sulfexigens DSM 10523]
Length = 478
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 54/299 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---E 791
++ SWNVNG+RA +F F++ + + +V +QEI+ +E+LP +
Sbjct: 226 LRLVSWNVNGLRA------VFKKGFMES------LVEMAPDVLGLQEIKATVEQLPTELQ 273
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH+F++ R+GY+GV +K KP V G
Sbjct: 274 SLPGYHSFFYSADRKGYSGVVTYTKEKPENVIRGI------------------------- 308
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
D+ +GRV+T+E+ ++ +N Y P +K DLS L K +N L+
Sbjct: 309 -------------GDSRFDSEGRVLTLEFSNYFFINCYFPNSKHDLSRLDFKHDFNVRLQ 355
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+ L IK VV+ GD NVAH ID+A P N +GFT +E + +F G++D R
Sbjct: 356 EFAEELAVIKSVVICGDFNVAHKEIDLANPRQNRKNAGFTPEECAWMDDFTAAGWIDSFR 415
Query: 972 HLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
Y++W Y R + GWR+DY + K+ + + D++I + GSDH P +L
Sbjct: 416 MKNKEPDQYSWWSYRSRARERNIGWRIDYHCVDKKSRKRIVDVDILQHIHGSDHCPVVL 474
>gi|115440517|ref|NP_001044538.1| Os01g0801100 [Oryza sativa Japonica Group]
gi|113534069|dbj|BAF06452.1| Os01g0801100 [Oryza sativa Japonica Group]
Length = 310
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 147/305 (48%), Gaps = 54/305 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPE 791
KI SWN+NG+ K F++ L Q++ F +V C+QE +EK
Sbjct: 54 MKILSWNINGLHD-VVTTKGFSARDLAQRENF--------DVLCLQETHLEEKDVEKFKN 104
Query: 792 CPEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
Y ++W +R GY+G AV+S+ KP+ V +G ++ H H
Sbjct: 105 LIADYDSYWSCSVSRLGYSGTAVISRVKPISVQYGIGIRE----HDH------------- 147
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSF 909
+GRV+T+E++ FYLVN Y P + L L+ ++ W+
Sbjct: 148 ---------------------EGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRVNNWDPC 186
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLD 968
++K L + KPV++AGDLN A ID+ P +GFTI+ER F +NF G +D
Sbjct: 187 FSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVD 246
Query: 969 VHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +PN YT+W R + KGWRLDYFL S+ + + D I DV SDH+P
Sbjct: 247 TFRKQHPNAVGYTFWGENQRITN-KGWRLDYFLASESITDKVHDSYILPDVSFSDHSPIG 305
Query: 1029 LYLNL 1033
L L L
Sbjct: 306 LVLKL 310
>gi|390468816|ref|XP_003734006.1| PREDICTED: uncharacterized protein LOC100400557 [Callithrix jacchus]
Length = 289
Score = 143 bits (361), Expect = 5e-31, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 135/310 (43%), Gaps = 87/310 (28%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V ++G RG
Sbjct: 107 ELQELPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKV-------------SYGIGRG---- 149
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
++ +EY Q W
Sbjct: 150 ----------------------------LVRLEYRQ----------------------RW 159
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 160 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 219
Query: 966 FLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 220 LADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 279
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 280 HCPITLYLAL 289
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 49/272 (18%)
Query: 767 SFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWF----PGTRQGYAGVAVLSKTKPVRV 822
S +Q D +QE + +PE E YH ++ P ++GY+G L + KP+ V
Sbjct: 14 SVFKQDDYFGIALQETKADSTSVPE--EMYHLGYYLYNNPAKKKGYSGTMSLVREKPIDV 71
Query: 823 THGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ 882
++GF NE +GR++ +E+++
Sbjct: 72 SYGFE----------------NE--------------------------EGRILNLEFDK 89
Query: 883 FYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPL 942
FY +NVY P A+ L+ L +KL ++ + L + KP+++ GD NVAH ID+A P
Sbjct: 90 FYFINVYFPNAQHGLTRLDMKLDFDEKFLEYSNELRKKKPLIICGDFNVAHEEIDIARPK 149
Query: 943 TNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFL 1001
N +GFT QER++ + FLD G++D +R Y++W Y ++ +K GWR+DYF+
Sbjct: 150 DNENNAGFTKQERDWMTKFLDSGYVDTYRIFMKEGGHYSWWSYRFNARAKNIGWRIDYFV 209
Query: 1002 ISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+S ++ + EI V GSDHAP L ++L
Sbjct: 210 VSDDIRDRVKKAEILETVTGSDHAPVTLEVDL 241
>gi|342214112|ref|ZP_08706820.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str. F0422]
gi|341595797|gb|EGS38436.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str. F0422]
Length = 175
Score = 143 bits (360), Expect = 6e-31, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+T EYE+FYLV Y P ++ +L+ L ++ W R +L +L+ KPV+L GDLNV
Sbjct: 12 EGRVITAEYEKFYLVTCYTPNSQRELARLEYRMEWEVAFREYLLALDAKKPVILCGDLNV 71
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNH-RIYTYWPYYDRPS 990
AH ID+ P TN +GF+ +ER + L GF D R+LYP+ Y++W Y +
Sbjct: 72 AHQEIDLKNPKTNRKNAGFSDEEREKMTELLAAGFTDTFRYLYPDAVDAYSWWSYMGKAR 131
Query: 991 KMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ GWR+DYFL+S + + + +IH D+ GSDH P L ++L
Sbjct: 132 ERNVGWRIDYFLVSNSIADKIQEAKIHADIFGSDHCPVELVMDL 175
>gi|55296320|dbj|BAD68138.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297697|dbj|BAD68287.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
Length = 307
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 147/305 (48%), Gaps = 54/305 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPE 791
KI SWN+NG+ K F++ L Q++ F +V C+QE +EK
Sbjct: 51 MKILSWNINGLHD-VVTTKGFSARDLAQRENF--------DVLCLQETHLEEKDVEKFKN 101
Query: 792 CPEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
Y ++W +R GY+G AV+S+ KP+ V +G ++ H H
Sbjct: 102 LIADYDSYWSCSVSRLGYSGTAVISRVKPISVQYGIGIRE----HDH------------- 144
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSF 909
+GRV+T+E++ FYLVN Y P + L L+ ++ W+
Sbjct: 145 ---------------------EGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRVNNWDPC 183
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLD 968
++K L + KPV++AGDLN A ID+ P +GFTI+ER F +NF G +D
Sbjct: 184 FSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVD 243
Query: 969 VHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +PN YT+W R + KGWRLDYFL S+ + + D I DV SDH+P
Sbjct: 244 TFRKQHPNAVGYTFWGENQRITN-KGWRLDYFLASESITDKVHDSYILPDVSFSDHSPIG 302
Query: 1029 LYLNL 1033
L L L
Sbjct: 303 LVLKL 307
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 143 bits (360), Expect = 6e-31, Method: Composition-based stats.
Identities = 97/331 (29%), Positives = 152/331 (45%), Gaps = 86/331 (25%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHA 798
SWNVNG+RA + K F I + +++ L QE + L+ LP+ Y
Sbjct: 5 SWNVNGLRA--VLKKGFEDIVCELDADIVALQETKL-----QEGQATLD-LPQ----YRE 52
Query: 799 FWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+W ++GY+G A+ K +P++ HG GF P
Sbjct: 53 YWSYAEKKGYSGTAIFCKEQPLQALHGL-----------GF-----------------PH 84
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
L T +GR++ +E+ +F+ V+VY P A+ +L+ + ++ W+ R K L
Sbjct: 85 LDT----------EGRIVALEFPKFWFVDVYTPNAQNELARIDHRMEWDDAFRDFCKGLE 134
Query: 919 E----------------------------------IKPVVLAGDLNVAHNHIDVALPLTN 944
E KPVV+ GD NVAH ID+ P N
Sbjct: 135 EGVLPAGVPVERPALGEGHVAISELPLTQPGETADPKPVVMCGDFNVAHQEIDLKNPGPN 194
Query: 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN-HRIYTYWPYYDRPSKMK-GWRLDYFLI 1002
GK+GF+ +ER F++ L++GF+D RHL+P+ Y++W Y + + GWR+DYFL+
Sbjct: 195 RGKAGFSDEERGKFTDLLEVGFVDSFRHLHPDVTGAYSWWSYRFKARQTNAGWRIDYFLV 254
Query: 1003 SKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
S +L + I+ +V GSDH P + L L
Sbjct: 255 SDELAPKIQSACIYDEVYGSDHCPVGIELEL 285
>gi|319902391|ref|YP_004162119.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
gi|319417422|gb|ADV44533.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
Length = 267
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 55/301 (18%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N KI ++NVNG+RA V K F Q++ +V C+QE + E+ P
Sbjct: 13 NMKIITYNVNGLRA--AVTKGFPEWLAQEQP----------DVLCLQETKLQPEQYPADA 60
Query: 794 E---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
GY + + ++GY+GVA+L+K +P RV +G M+ E+ S+
Sbjct: 61 LDSLGYKHYLYSARKKGYSGVAILAKREPDRVEYGMGME---------------EYDSE- 104
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
GR + +Y+ +V+VY P+ + K++W
Sbjct: 105 ----------------------GRFLRADYDDLSIVSVYHPSGTSGDERQAFKMVWLEKF 142
Query: 911 RGHLKSLNEIKP-VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
+ ++ L +P ++L GD N+ H ID+ P+ N SGF +ER + + FLD GF D
Sbjct: 143 QEYVLELQRTRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFLDAGFTDS 202
Query: 970 HRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R L+P+ + YT+W Y ++ ++ KGWR+DY ++++ ++ L D I D SDH P +
Sbjct: 203 FRFLHPDKQEYTWWSYRFNSRARNKGWRIDYCMVNEPVRPMLKDARILNDAVHSDHCPML 262
Query: 1029 L 1029
L
Sbjct: 263 L 263
>gi|270009978|gb|EFA06426.1| hypothetical protein TcasGA2_TC009305 [Tribolium castaneum]
Length = 1118
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 896 DLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQER 955
+L L +L WN +K+L+ KPV++ GD+NVAH ID+A P TN +GF+++ER
Sbjct: 979 NLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEER 1038
Query: 956 NYFSNFLDLGFLDVHRHLYP-NHRIYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSD 1012
+ + FL G++D++RHLYP + YT+W Y RP+ + GWRLDYFL+S++ ++ D
Sbjct: 1039 DGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYMRNARPNNV-GWRLDYFLVSQRFVDNVCD 1097
Query: 1013 LEIHGDVEGSDHAPQILYLNL 1033
IH DV GSDH P L++ +
Sbjct: 1098 NIIHSDVMGSDHCPLSLHIQI 1118
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 34/239 (14%)
Query: 564 SSTSTSTDVLPAHKMSLA---PERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKF 620
SS +T V PA + E+KI + RNK +K + K P+E + T G
Sbjct: 755 SSKKENTKVPPAEPAEVTNGTDEKKITK---RNKAEATSSKKENTKVPPAEPAEVTNGTD 811
Query: 621 ELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKA---SRKNVFS 677
E K+I +R +E TS E + EP +N +E + KR KA + K S
Sbjct: 812 E--KKI-TKRNKAEATSSKKENTKVPPAEPAEVTNGTDEKKIT--KRNKAEGKTAKKADS 866
Query: 678 FKLNEIHVGTGK-IENRLGCDSSNETSYAEVEEVP----IIDFNDPFRILEHKRRQDQYP 732
E V K + R G + E + + + P + ++ + K + + P
Sbjct: 867 GNKEETQVEEAKKPQTRTGLATKRE--FVQSTKGPKNSTVTNWENINFKCTTKSPKGKAP 924
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
NF I +WNV+G+R+W +K ++ ++ CIQE +C + KLPE
Sbjct: 925 -NFHITTWNVDGLRSW------------LKKGCLDILKYDKPDILCIQETKCAVYKLPE 970
>gi|379010717|ref|YP_005268529.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
gi|375301506|gb|AFA47640.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
Length = 254
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 149/303 (49%), Gaps = 59/303 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRC---PLEK-LP 790
KI SWNVNGIRA +K GF +F+ + ++ CIQE + LE L
Sbjct: 2 KIISWNVNGIRA-------------AEKKGFLTFIEEVSPDLLCIQETKAHDHQLEASLL 48
Query: 791 ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ P GY A++ G ++GY+G AV K +P+ + G S
Sbjct: 49 DIP-GYFAYFHSGEKKGYSGTAVYYKQEPLAIRTGLS----------------------- 84
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
DA+ ++GR + +EY F L NVY P ++D L+ K+ +N L
Sbjct: 85 ---------------DATFNNEGRTIIMEYPDFILYNVYFPNGQKDDERLNFKMAFNQCL 129
Query: 911 RGHL-KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
+ + K L+ K V++ GD+N+AH ID+ P N +SGF +ER + +FL +G +D
Sbjct: 130 QNDIQKLLDAKKNVIVCGDINIAHQEIDLKNPKENSKRSGFLPEERAWIDDFLSIGMVDS 189
Query: 970 HRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R +P Y++W Y ++ + GWR+D F +S+ S + +I DV GSDH P +
Sbjct: 190 WRVQHPEEVKYSWWSYRFNARAHNAGWRIDSFFVSEPFMSRVDCTDILNDVLGSDHCPIV 249
Query: 1029 LYL 1031
L L
Sbjct: 250 LTL 252
>gi|298528123|ref|ZP_07015527.1| exodeoxyribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
gi|298511775|gb|EFI35677.1| exodeoxyribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
Length = 254
Score = 142 bits (358), Expect = 1e-30, Method: Composition-based stats.
Identities = 90/302 (29%), Positives = 141/302 (46%), Gaps = 55/302 (18%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE-- 794
I SWNVNG RA + K + + + +++V C+QE + ++LP +
Sbjct: 3 IYSWNVNGFRA------------VTGKGFWDWFQDRNIDVLCLQETKAHPDQLPAKDKEV 50
Query: 795 -GYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY+ +W P ++GY+G A + +P ++ G + H +G
Sbjct: 51 SGYNIYWNPARIKKGYSGTACFYRLEPQYISTGLPQE-----HLNG-------------- 91
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GR++ +EYE FYL NVY P + L KL +
Sbjct: 92 -------------------EGRMILMEYESFYLFNVYFPNGQMSHERLKFKLNYYDRFLE 132
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ + L KP+V+ GD N AH ID+ P N +SGF ER + F+D G++D R
Sbjct: 133 YAQDLRRKKPIVVCGDFNTAHKDIDLKNPRANEDRSGFLPVERQWLDKFIDHGYVDTFRM 192
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
YT+W Y + S+ GWR+DYF +S++L+S++ + I V GSDH P L L
Sbjct: 193 FNQEGGNYTWWTYRFGARSRNAGWRIDYFFVSEELRSNVQNAWIEPQVMGSDHCPVGLKL 252
Query: 1032 NL 1033
N+
Sbjct: 253 NI 254
>gi|395645806|ref|ZP_10433666.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442546|gb|EJG07303.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
Length = 253
Score = 142 bits (357), Expect = 1e-30, Method: Composition-based stats.
Identities = 88/294 (29%), Positives = 133/294 (45%), Gaps = 58/294 (19%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP---ECPE 794
SWNVNGIR+ K GF + ++ CIQE + +++P P
Sbjct: 5 SWNVNGIRS-------------VHKKGFCKWFGDESPDILCIQETKAQEDQIPPEIRSPP 51
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
GYHA++ R+GY+GVA+ S+ +P+ +T F + G
Sbjct: 52 GYHAYFSSAMRKGYSGVALFSREEPISITRDFDGRFG----------------------- 88
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
D+GR++ EY+ F L ++Y P K L+ K+ + +
Sbjct: 89 ----------------DEGRIIIAEYQAFTLFDIYFPNGKSSPERLAYKMAFYDAFLSSV 132
Query: 915 KSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ +NE + VV+ GD+N AH ID+A P N+ SGF +ER +++ G +D R
Sbjct: 133 RGMNEEGRSVVVCGDVNTAHQAIDLARPKENVKISGFLPEERAALDLWIESGLVDTFRFF 192
Query: 974 YPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YTYW R + GWR+DYF +S +L + D I DV GSDH P
Sbjct: 193 TAEGGHYTYWDLKTRARDRNVGWRIDYFFVSSELAGAVQDAFILPDVMGSDHCP 246
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 144/303 (47%), Gaps = 58/303 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
+I SWNVNGIRA L K F + + + + CIQE + E+L E
Sbjct: 2 RIYSWNVNGIRA------------LYNKGEFFKLFEEEPEIVCIQETKAQAEQLSEELLN 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY +F+ ++GY+GVAV SK KP+ V D+E
Sbjct: 50 INGYSSFFESADKKGYSGVAVYSKKKPLMVKK-----------------------FDIER 86
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
S +GR + +EYE F L+N Y P ++E L K+ + +
Sbjct: 87 FDS----------------EGRYIELEYEDFILINCYFPNSQEKGKRLDYKIDFCDEILN 130
Query: 913 HLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+L+ + K V++ GD N+AH ID+A P N G+ +ER + + F++ G++D R
Sbjct: 131 YLEERKKSGKAVIITGDYNIAHKPIDLARPKDNEENPGYLPEEREWMTKFIEAGYVDSFR 190
Query: 972 HLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
YP YT+W Y R K GWR+DYF I+K+ + L D I DV GSDH P +Y
Sbjct: 191 KFYPEEVKYTWWSYRTRAREKNIGWRIDYFCINKESEGILIDSGIRNDVFGSDHCP--IY 248
Query: 1031 LNL 1033
+++
Sbjct: 249 IDI 251
>gi|256080329|ref|XP_002576434.1| ap endonuclease [Schistosoma mansoni]
Length = 254
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 53/222 (23%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
WNFKI SWNVNGIRA + + +G ++++ + ++FCIQE +CPL K+P
Sbjct: 63 WNFKIVSWNVNGIRA------------VIKNNGMEYIKKENADIFCIQETKCPLHKIPSE 110
Query: 793 PE--GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ Y +FW + GYAG A+ SK P++VT+G +G +H
Sbjct: 111 AKVPSYQSFWSSADKAGYAGTALFSKISPIKVTYG----IGKKMHD-------------- 152
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVK-LLWNSF 909
D+GRV+T EY++FYLV Y P + + L L + W+
Sbjct: 153 --------------------DEGRVITAEYDKFYLVTAYVPNSGQGLIRLPYREKEWDPD 192
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFT 951
+L+ L+ KPV++ GDLNVAH ID+A P TN +GFT
Sbjct: 193 FLEYLRKLDSTKPVIVCGDLNVAHEEIDLARPETNHKTAGFT 234
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 55/303 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI SWNVNG+RA + +K F F+ + ++ CIQE + LE L E +
Sbjct: 2 KIYSWNVNGLRA------------VSKKGFFEFVSYENPDILCIQETKLQLETLSEELKN 49
Query: 796 ---YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
Y++++ R+GY+GVA +K KPV + HG ++ F++
Sbjct: 50 IKEYYSYFSFAERKGYSGVATYTKKKPVSIKHGIGIE--------KFDK----------- 90
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+GR++ E+ +F L N+Y P ++D L+ KL + L
Sbjct: 91 -------------------EGRILITEFNEFILFNIYFPNGQKDEERLNYKLEFYDALFE 131
Query: 913 HLKSLN-EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+L L E K +++ GD N+AH ID+ N SGF ER F+ G++D R
Sbjct: 132 YLDKLKIEDKKIIICGDYNIAHREIDIKNAKANEKISGFLPIERKLIDKFISKGYVDTFR 191
Query: 972 HLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILY 1030
++ Y++W Y + + GWR+DYFL+++ L ++ + +I DV GSDH P +
Sbjct: 192 SIHREEIKYSWWSYRFKARERNAGWRIDYFLVTENLLENVKEADILNDVMGSDHCPVSIL 251
Query: 1031 LNL 1033
L++
Sbjct: 252 LDI 254
>gi|183233999|ref|XP_650532.2| exodeoxyribonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|169801308|gb|EAL45146.2| exodeoxyribonuclease III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710475|gb|EMD49542.1| exo-deoxyribonuclease III, putative [Entamoeba histolytica KU27]
Length = 319
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 45/268 (16%)
Query: 768 FMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGF 826
F+++ + ++ C+QE + + + +GYH ++ T ++GYAG A+LSK +P+ +T
Sbjct: 91 FIKEENPDILCVQETKLQ-DGVNPMIDGYHCYFSASTAKKGYAGTAILSKEEPLSITK-- 147
Query: 827 SMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLV 886
K+ G NEH GR++TVEYE+FYLV
Sbjct: 148 --KING---------KENEH--------------------------GRIITVEYEKFYLV 170
Query: 887 NVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
N Y + + L L + W+ +R HLK+L + K V+ GDLNVA IDVA P+T L
Sbjct: 171 NSYVMNSGQRLENLVKRTTEWDKDMREHLKALQKKKNVIWCGDLNVALRWIDVAKPMTRL 230
Query: 946 GKSGFTIQERNYFSNFL-DLGFLDVHRHLYPNHR-IYTYWPYYDRPSKMKGWRLDYFLIS 1003
+GFT +ER + + +L +D + YP R YT++ + D+ SK GWRLDYF +S
Sbjct: 231 RCAGFTKEERASTNETIKELNLVDTFQVKYPKKRDFYTFFSFKDK-SKTAGWRLDYFFVS 289
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
K L ++ + ++ SDH P I+++
Sbjct: 290 KDLVDSVTQIYRRKEISASDHVPLIIHI 317
>gi|189238808|ref|XP_001815482.1| PREDICTED: similar to ap endonuclease, partial [Tribolium castaneum]
Length = 1545
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 896 DLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQER 955
+L L +L WN +K+L+ KPV++ GD+NVAH ID+A P TN +GF+++ER
Sbjct: 1406 NLVTLPKRLDWNEQFEKFIKNLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEER 1465
Query: 956 NYFSNFLDLGFLDVHRHLYP-NHRIYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSD 1012
+ + FL G++D++RHLYP + YT+W Y RP+ + GWRLDYFL+S++ ++ D
Sbjct: 1466 DGMTAFLGNGYVDIYRHLYPEKEKAYTFWIYMRNARPNNV-GWRLDYFLVSQRFVDNVCD 1524
Query: 1013 LEIHGDVEGSDHAPQILYLNL 1033
IH DV GSDH P L++ +
Sbjct: 1525 NIIHSDVMGSDHCPLSLHIQI 1545
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
NF I +WNV+G+R+W +K ++ ++ CIQE +C + KLPE
Sbjct: 1344 NFHITTWNVDGLRSW------------LKKGCLDILKYDKPDILCIQETKCAVYKLPE 1389
>gi|58337957|ref|YP_194542.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227902875|ref|ZP_04020680.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
gi|58255274|gb|AAV43511.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227869391|gb|EEJ76812.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
Length = 253
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 138/299 (46%), Gaps = 51/299 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K SWNVNG R + F FL D ++F +Q+ R +++
Sbjct: 2 KFVSWNVNGFR--RCLRHGFLDTFLDL----------DPDIFGMQDTRLSPKEVKIDLTE 49
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y+ +W + Y G AV +K KP+ V +G +
Sbjct: 50 YYQYWNFSEEKRYDGAAVFTKIKPLAVYNGIGI--------------------------- 82
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
PE +GR +T+E+ +FY VN +AP A E L L +++W R ++
Sbjct: 83 -PEFDR----------EGRTITLEFPKFYYVNTFAPYAGEQLQRLDFRVMWAQAFRNYVT 131
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
L KPV++ GD++VAH+ ID+A P N +GFT ER F+ L+ GF D R L+P
Sbjct: 132 KLANNKPVIIGGDMSVAHDEIDLAEPEKNKNHAGFTGDERKEFTELLNAGFEDTFRTLHP 191
Query: 976 NHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YTYW +D K G RLDYFL+S L + +I +++ SDH P L +++
Sbjct: 192 KDEAYTYWSRHDNARDKNIGERLDYFLVSHALTDKVEGSDILNNIDESDHCPIELNMDI 250
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 53/298 (17%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-CP 793
KI ++NVNG+RA V+K ++ Q +V CIQE + ++ PE
Sbjct: 1 MKIITYNVNGLRA--AVSKGLPE----------WLEQEQADVVCIQETKLQPDQYPEEAL 48
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
+GY + + ++GY+GVA+LSK +P V +G M+
Sbjct: 49 KGYKHYLYSAQKKGYSGVAILSKQEPDHVEYGMGME------------------------ 84
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+Y + +GR + +Y +V+VY P+ + K++W + +
Sbjct: 85 ---------EYDN-----EGRFIRADYGDISVVSVYHPSGTSGDERQAFKMVWLEKFQEY 130
Query: 914 LKSLNEIKP-VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ L + +P ++L GD N+ H ID+ P+ N SGF +ER + + FLD GF+D R
Sbjct: 131 VTELRKSRPKLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFLDAGFIDTFRA 190
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
L+P + YT+W Y ++ +K KGWR+DY ++++ ++S L + I D SDH P +L
Sbjct: 191 LHPELQEYTWWSYRFNSRAKNKGWRIDYCMVTEPVRSMLKEARILNDAVHSDHCPMLL 248
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 143/298 (47%), Gaps = 56/298 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLE-KLPEC 792
K+ SWNV G R S + K F+ ++ + + ++ C+QE + P E +
Sbjct: 1 LKVISWNVAGFR--SVLTKGFSD----------YVVKENPDILCLQETKIKPTEVQKSSI 48
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
P GY + + G+ G +L+K KP+ S+K G + H D E
Sbjct: 49 PSGYEYHFVSADQAGHHGTGLLTKLKPL------SLKFGIGIAKH-----------DTE- 90
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKLL-WNSFL 910
GRV+T EY+ FYLVN Y P + L L ++ W+
Sbjct: 91 --------------------GRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDF 130
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L L++ KPVV GDLNVAH ID+ P TN +GFTIQER F +FL+ GF+D +
Sbjct: 131 QKYLVELDKKKPVVWCGDLNVAHTEIDLKNPKTNTKSAGFTIQERTSFGDFLNKGFIDSY 190
Query: 971 RHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RH P +T+W Y +K GWRLDYF++SK+ + I V GSDH P
Sbjct: 191 RHYNPGKEGAFTFWTYMGGARAKNVGWRLDYFVVSKRYIDSIKTPFIRSTVMGSDHCP 248
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 106/172 (61%), Gaps = 6/172 (3%)
Query: 861 TIQYADASGIDD----GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS 916
I+ + GID+ GRV+T+EYEQFYLV+ Y P +++ L L +L W + +LK
Sbjct: 3 AIKVTNGIGIDEFDHEGRVITLEYEQFYLVDCYTPNSQQKLKRLDFRLKWELAFQTYLKK 62
Query: 917 LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPN 976
L++ KPV+L GDLNVAH ID+ TN +GF+ QER ++ LD GF+D R L+P
Sbjct: 63 LDQTKPVILCGDLNVAHQKIDLKNWKTNRHNAGFSDQERQAMTSLLDKGFIDSFRFLHPE 122
Query: 977 HR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
IY++W Y + GWR+DYF++S +LK+ + +I ++ GSDH P
Sbjct: 123 TTGIYSWWSYRFHARENNAGWRIDYFIVSDRLKNRILKADILTNIYGSDHCP 174
>gi|28211273|ref|NP_782217.1| exodeoxyribonuclease III [Clostridium tetani E88]
gi|28203713|gb|AAO36154.1| exodeoxyribonuclease III [Clostridium tetani E88]
Length = 260
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 146/306 (47%), Gaps = 61/306 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---LEKLPEC 792
+I SWNVNG+RA + +K+ F ++ + +VFC+QE + LE +
Sbjct: 5 RIFSWNVNGLRA------------IAKKNFFKWVEEEKPDVFCLQETKIQDHQLEDNLKN 52
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
EGY +++ ++GY+GVA +KT+P V +G G NE
Sbjct: 53 IEGYKSYFSFAEKKGYSGVATYTKTEPKSVLNGI-----------GIEEFDNE------- 94
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
GRV+ E+E+F L+N+Y P + + L KL F
Sbjct: 95 --------------------GRVLISEFEEFTLLNIYFPNGQMNDERLDYKL---RFYDA 131
Query: 913 HLKSLNEI----KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
L N++ K +++ GD N AH ID+ P N SGF ER + F++ G++D
Sbjct: 132 ILDYCNDLVSKGKKLIICGDYNTAHREIDLKNPKNNEKYSGFLPIEREWIDKFINNGYVD 191
Query: 969 VHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQ 1027
V+R+ YP Y++W Y + + GWR+DYF +S + + D +IH +V GSDH P
Sbjct: 192 VYRNFYPEKVEYSWWSYRFKARERNAGWRIDYFFVSDNVLPLIKDTKIHTEVLGSDHCPI 251
Query: 1028 ILYLNL 1033
L L++
Sbjct: 252 ELILDI 257
>gi|399887720|ref|ZP_10773597.1| exodeoxyribonuclease III [Clostridium arbusti SL206]
Length = 254
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 142/295 (48%), Gaps = 55/295 (18%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---CP 793
I SWNVNG+RA + +K F F+ +++ ++ CIQE + L+ L E
Sbjct: 3 IYSWNVNGLRA------------ISKKGFFEFINEYNPDILCIQETKLQLDNLSEELKGI 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
EGY++++ ++GY+GVA +K KP+ V +G G R +E
Sbjct: 51 EGYNSYFSCAKKKGYSGVATYTKEKPISVKYGI-----------GIERFDSE-------- 91
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
GR++ E+ F L N+Y P ++D L KL + L +
Sbjct: 92 -------------------GRILITEFNNFILFNIYFPNGQKDEERLKYKLDFYDALLEY 132
Query: 914 LKSLN-EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
L L E K +++ GD N AHN ID+ N SGF ER + F+ G++D R+
Sbjct: 133 LNKLKIEGKKLIICGDYNTAHNEIDIKNAKANEKYSGFLPIERAWIDKFILNGYVDTFRY 192
Query: 973 LYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
++ + Y++W Y + + GWR+DYF +++ L +++ EI ++ GSDH P
Sbjct: 193 IHKDEIKYSWWSYRFKARERNAGWRIDYFFVTESLIDNINSAEILNEIMGSDHCP 247
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 140 bits (353), Expect = 4e-30, Method: Composition-based stats.
Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 61/301 (20%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
N+ + SWNVNG+RA + K F + L+QK ++ CIQE + +KLP
Sbjct: 4 NYNLISWNVNGLRA--VMKKGFLELLLEQK----------FDIVCIQETKVSPDKLPREA 51
Query: 794 E---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
+ GY+ ++ + GY+GV + SK KP+++ G ++ F++
Sbjct: 52 KNIPGYYNYFVSAEKNGYSGVGLFSKKKPLKLETGMGIE--------KFDK--------- 94
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
+GR + ++E F L+N+Y P K L L K+ SF
Sbjct: 95 ---------------------EGRFLRADFEDFTLMNIYFPNGKASLERLEYKM---SFY 130
Query: 911 RGHLKSLNEIKP----VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
L N +K +V+ GD+N AH +D+A P N SGF +ER + FL G+
Sbjct: 131 EAFLDYANSLKAEGKRLVICGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFLAAGY 190
Query: 967 LDVHRHLYPNHRIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
LD R P Y++W K GWRLDYF +S++L+ ++ I+ ++ GSDH
Sbjct: 191 LDTFRMFNPEGGNYSWWSMRTGARKRNVGWRLDYFFVSEKLRDNVKSAPIYSEIMGSDHC 250
Query: 1026 P 1026
P
Sbjct: 251 P 251
>gi|451979745|ref|ZP_21928157.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
gi|451763024|emb|CCQ89356.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
Length = 254
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 137/297 (46%), Gaps = 58/297 (19%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLP---EC 792
I SWNVNGIRA K GF +M D +V C+QE + E++P
Sbjct: 3 IYSWNVNGIRA-------------VAKKGFGDWMESVDPDVVCLQETKAHPEQVPPEVAY 49
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
PEGY A+W P TR+GY+GVAV SKTKP +V +G G R +E
Sbjct: 50 PEGYEAYWCPATRKGYSGVAVFSKTKPKQVHYGM-----------GIERFDSE------- 91
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
GR + +E+ +F L+N+Y P L K+ +
Sbjct: 92 --------------------GRYLRLEFTKFDLLNIYFPNGTSGDERLQFKMEYYDAFLD 131
Query: 913 HLKSL--NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
H ++L + K +V+ GD+N AH ID+ N SGF ER + F+ G++D
Sbjct: 132 HCETLRKKQKKKLVICGDVNTAHREIDLKNAKQNEKNSGFLPMEREWIDKFIAHGYVDTF 191
Query: 971 RHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R YT+W Y + ++ GWR+DYF +++ L ++ I +V GSDH P
Sbjct: 192 REFCQEPDNYTWWTYRANARARNIGWRIDYFFVTRDLLKNVKKSFITPEVMGSDHCP 248
>gi|374628249|ref|ZP_09700634.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
gi|373906362|gb|EHQ34466.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
Length = 256
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 143/310 (46%), Gaps = 69/310 (22%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---EC 792
++ SWNVNGIRA + +K F++++ ++ CIQE + ++LP
Sbjct: 4 RLVSWNVNGIRA------------VHKKGFLDFVKEYSPDILCIQETKAHEDQLPSELRH 51
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
PEGY +++ ++GY+GVA+ SK +P V GF GS+ ++
Sbjct: 52 PEGYFSYFSSAEKKGYSGVALYSKDEPESVRFGF---------------GSDRFDTE--- 93
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLR 911
GR++ +Y F L N+Y P K L KL +N L
Sbjct: 94 --------------------GRIIIADYPDFSLFNIYFPNGKASAERLDFKLDFYNECLN 133
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
K L + + V++ GD+N AH ID+A P N SGF ER + LD GF D
Sbjct: 134 QAEKLLADGRNVIICGDVNTAHKEIDLARPKANENVSGFLPVERAWIDKLLDAGFAD--- 190
Query: 972 HLYPNHRIYT----YWPYYDRPSKMK----GWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
+ R++T Y+ +YD S+ + GWR+DYF +SK+ H EI + GSD
Sbjct: 191 ----SFRMFTKEGGYYSWYDLKSRARERNVGWRIDYFFVSKKFLEHAVSAEILAHIYGSD 246
Query: 1024 HAPQILYLNL 1033
H P L + L
Sbjct: 247 HCPVTLEIEL 256
>gi|409100041|ref|ZP_11220065.1| exodeoxyribonuclease III Xth [Pedobacter agri PB92]
Length = 255
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 144/301 (47%), Gaps = 57/301 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
KI S+NVNGIRA S K+ F +++ + ++ C+QE++ ++PE
Sbjct: 2 KIISYNVNGIRAAST------------KNFFGWLQATNADMICLQEVKALPVQIPEIIAL 49
Query: 795 ----GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
GYH +WFP ++GY+GVA+L+K KP + +G E D
Sbjct: 50 VEQLGYHHYWFPAEKKGYSGVAILTKIKPNHIEYG-----------------CGEEWIDQ 92
Query: 851 ESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFL 910
E GR++ +++ F L+++Y P+ K + +F
Sbjct: 93 E---------------------GRILRADFDDFSLMSLYMPSGSSGDERQLKKYAFMTFF 131
Query: 911 RGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969
++ L EI ++++GD N+ H ID+ P +N SGF +ER + FLD GF+D
Sbjct: 132 DVYINELRKEIPNLIVSGDYNICHTSIDIHNPKSNANSSGFLPEEREWMQLFLDNGFIDA 191
Query: 970 HRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
RH + YT+W Y K GWR+DY L++K ++S L ++ I D SDH P +
Sbjct: 192 FRHFNKDPHHYTWWSYRAGSRGKNLGWRIDYHLVTKPMESRLKNVRILPDAIHSDHCPVL 251
Query: 1029 L 1029
L
Sbjct: 252 L 252
>gi|317486298|ref|ZP_07945130.1| exodeoxyribonuclease III [Bilophila wadsworthia 3_1_6]
gi|316922468|gb|EFV43722.1| exodeoxyribonuclease III [Bilophila wadsworthia 3_1_6]
Length = 263
Score = 140 bits (352), Expect = 5e-30, Method: Composition-based stats.
Identities = 90/297 (30%), Positives = 136/297 (45%), Gaps = 52/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
++ SWNVNG RA L K + + D +V +QE + ++ E
Sbjct: 5 RLVSWNVNGFRA------------LSGKPDWDWFASTDADVVALQETKAEPSQIAEEHRS 52
Query: 793 PEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
PEG++A W ++GY+GVAV S+ K + +E
Sbjct: 53 PEGWNAEWLAAQVKKGYSGVAVFSRQK-----------------------------AALE 83
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
H EL +Y +GR++ +EY F+ NVY P +D L+ K+ +
Sbjct: 84 PLAVHRELPDPRYQG-----EGRLLHIEYPAFHFFNVYFPNGTKDDGRLAYKMGYYDAFL 138
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
H + L KP+V+ GD N AH ID+A P N SGF ER + F+ G++D R
Sbjct: 139 AHAEELRRTKPIVVCGDFNTAHRPIDLARPKANEENSGFLPIERAWVDRFIAAGYVDTFR 198
Query: 972 HLYPNH-RIYTYWPYYDRPS-KMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H++ + Y++W Y R GWR+DYF +S++L + D I +V GSDH P
Sbjct: 199 HIHGDEPHQYSWWSYKQRARVNNVGWRIDYFFVSEELAPAIRDAWIENNVYGSDHCP 255
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 140 bits (352), Expect = 5e-30, Method: Composition-based stats.
Identities = 90/297 (30%), Positives = 139/297 (46%), Gaps = 56/297 (18%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE- 794
K SWNVN IRA + K F +++ ++ +QE++ ++ P E
Sbjct: 2 KFISWNVNWIRA--SIKKWF----------IEYIQDEKPDIIAMQEVKATEDQFPARLEM 49
Query: 795 ---GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
Y +W + Y+ A+ +K KP+ VT+ + EH ++
Sbjct: 50 ELMWYSIYWNAAFKNWYSWTAIFTKEKPLEVTYWLWIW---------------EHDNEW- 93
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
R++T+E+E+FY + VY P +K +L+ L + LW+S
Sbjct: 94 ----------------------RIITLEFEKFYFITVYTPNSKRELNRLEYRQLWDSLFL 131
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
+++ L KPVV+ DLNVAH ID+ P N +GFT +ER F FL+ GF+D R
Sbjct: 132 DYMRRLEVNKPVVVCWDLNVAHKEIDLKNPKPNRWNAGFTDEEREGFQKFLNAGFIDTFR 191
Query: 972 HLYPNH-RIYTYWPYYD-RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ YP Y++W + + GWR+DYFL S LK +L D I + GSDH P
Sbjct: 192 YFYPEKTEAYSWWSNFAFARDRNIGWRIDYFLTSWGLKDNLKDAFIMDQILGSDHCP 248
>gi|406905854|gb|EKD47195.1| hypothetical protein ACD_66C00177G0002 [uncultured bacterium]
Length = 261
Score = 140 bits (352), Expect = 5e-30, Method: Composition-based stats.
Identities = 91/296 (30%), Positives = 133/296 (44%), Gaps = 61/296 (20%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---CPEG 795
SWNVNGIR+ + +K ++ + ++ C+QEI+ +L + P+G
Sbjct: 10 SWNVNGIRS------------VMKKGFLDWLNKAKPDIVCLQEIKAKPGQLTDEILHPDG 57
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y W R+GY+GVA L K KP+ F K+
Sbjct: 58 YTGIWNSADRKGYSGVATLVKGKPLMQISNFGEKILD----------------------- 94
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
++GR++ E++ FYL NVY P D L K+ F + +
Sbjct: 95 ---------------EEGRIILTEHKDFYLFNVYFPNGARDAGRLDYKI---KFYKRFYE 136
Query: 916 SLNEI---KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
L+E KPV++ GD N AH+ ID+A P N +SGF ER + D G++D R
Sbjct: 137 LLDEYAGKKPVMICGDFNTAHHEIDIARPKANETRSGFLPMERKWLDKLEDKGYIDTFRF 196
Query: 973 LYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
YP R IY++W + GWR+DYF K+LK + D + DV GSDH P
Sbjct: 197 KYPKKRDIYSWWDVITHARERNVGWRIDYFWADKRLKLKIKDAMVMSDVLGSDHCP 252
>gi|313676472|ref|YP_004054468.1| exodeoxyribonuclease iii [Marivirga tractuosa DSM 4126]
gi|312943170|gb|ADR22360.1| exodeoxyribonuclease III [Marivirga tractuosa DSM 4126]
Length = 255
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 67/301 (22%)
Query: 737 IGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRC--------PLE 787
I S+NVNGIRA ++ G S ++ + +VFC+QE++ E
Sbjct: 3 IISYNVNGIRA-------------AERKGLSQWLEEEKPDVFCLQELKANRSDVDLSVFE 49
Query: 788 KLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
L GYH +W ++GY+GV + +K KP V G +M + ++R
Sbjct: 50 NL-----GYHIYWHSAEKKGYSGVGIFTKVKPNNVEIGCNMDI--------YDR------ 90
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+GRV+ ++E F ++N Y P+ K+ W
Sbjct: 91 ------------------------EGRVIRADFENFSVLNTYMPSGSSGDPRQDFKMQWL 126
Query: 908 SFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
S R +++ L EI +++ GD N+ H ID+ P+ N SGF +ER + ++FL+ GF
Sbjct: 127 SDFRAYIQDLKQEIPNLLICGDYNICHQAIDIHDPVRNKNSSGFLPEEREWMTDFLNDGF 186
Query: 967 LDVHRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHA 1025
+D RHL Y++W Y + KGWR+DY +IS+ LK+ L +I DV+ SDH
Sbjct: 187 IDSFRHLNKEPDQYSWWSYRSAARERNKGWRIDYHMISENLKNQLKAADILQDVKHSDHC 246
Query: 1026 P 1026
P
Sbjct: 247 P 247
>gi|345888041|ref|ZP_08839165.1| exodeoxyribonuclease III [Bilophila sp. 4_1_30]
gi|345041131|gb|EGW45322.1| exodeoxyribonuclease III [Bilophila sp. 4_1_30]
Length = 263
Score = 139 bits (351), Expect = 6e-30, Method: Composition-based stats.
Identities = 90/297 (30%), Positives = 136/297 (45%), Gaps = 52/297 (17%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
++ SWNVNG RA L K + + D +V +QE + ++ E
Sbjct: 5 RLVSWNVNGFRA------------LSGKPDWDWFASTDADVVALQETKAEPAQIAEEHRS 52
Query: 793 PEGYHAFWFPG-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
PEG++A W ++GY+GVAV S+ K + +E
Sbjct: 53 PEGWNAEWLAAQVKKGYSGVAVFSRQK-----------------------------AALE 83
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
H EL +Y +GR++ +EY F+ NVY P +D L+ K+ +
Sbjct: 84 PLAVHRELPDPRYQG-----EGRLLHIEYPAFHFFNVYFPNGTKDDGRLAYKMGYYDAFL 138
Query: 912 GHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHR 971
H + L KP+V+ GD N AH ID+A P N SGF ER + F+ G++D R
Sbjct: 139 AHAEELRRTKPIVVCGDFNTAHRPIDLARPKANEENSGFLPIERAWVDRFIAAGYVDTFR 198
Query: 972 HLYPNH-RIYTYWPYYDRPS-KMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
H++ + Y++W Y R GWR+DYF +S++L + D I +V GSDH P
Sbjct: 199 HIHGDEPHQYSWWSYKQRARVNNVGWRIDYFFVSEELAPAIRDAWIENNVYGSDHCP 255
>gi|224159467|ref|XP_002199909.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like, partial
[Taeniopygia guttata]
Length = 235
Score = 139 bits (351), Expect = 6e-30, Method: Composition-based stats.
Identities = 88/259 (33%), Positives = 122/259 (47%), Gaps = 45/259 (17%)
Query: 775 NVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMK 829
+V C+QE +C +P P H FW R GY+GV +L++++P+ VT+G
Sbjct: 8 DVLCLQETKCAAAAVPAEVRALPGLPHQFWCSAKDRPGYSGVGLLARSEPLDVTYGIG-- 65
Query: 830 VGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889
E D +G VMT E ++V Y
Sbjct: 66 ---------------EGRMDQTAG---------------------VMTTEIPSLFVVCAY 89
Query: 890 APAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949
P A + L +L ++ L+ L+ KPV+L GDLNVAH ID+ P N G
Sbjct: 90 VPNAGRGMVALEPRLRLDAAFLQFLRRLDARKPVLLCGDLNVAHADIDLCHPRANRASPG 149
Query: 950 FTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLK 1007
FT QER+ FS L GF+D RHLYP R +T+W Y ++ GWRLDY ++S++L
Sbjct: 150 FTPQERDGFSRLLAAGFVDSFRHLYPAARGAFTFWTYLGGARARNVGWRLDYAVVSQRLL 209
Query: 1008 SHLSDLEIHGDVEGSDHAP 1026
L D +I V GSDH P
Sbjct: 210 GALCDSKIRNTVPGSDHCP 228
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,120,784,985
Number of Sequences: 23463169
Number of extensions: 702333060
Number of successful extensions: 1708136
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2396
Number of HSP's successfully gapped in prelim test: 7291
Number of HSP's that attempted gapping in prelim test: 1674423
Number of HSP's gapped (non-prelim): 27066
length of query: 1033
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 880
effective length of database: 8,769,330,510
effective search space: 7717010848800
effective search space used: 7717010848800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 82 (36.2 bits)