BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12564
(1033 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27864|RRP1_DROME Recombination repair protein 1 OS=Drosophila melanogaster GN=Rrp1
PE=1 SV=2
Length = 679
Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 160/309 (51%), Gaps = 62/309 (20%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV G+RAW +KDG + + ++FC+QE +C ++LPE
Sbjct: 425 FNLKICSWNVAGLRAW------------LKKDGLQLIDLEEPDIFCLQETKCANDQLPEE 472
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
P GYH +W PG GYAGVA+ SK P+ V +G NE
Sbjct: 473 VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYGIG----------------NEE 512
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
D+ GR++T EYE+FYL+NVY P + L L ++ W
Sbjct: 513 FDDV----------------------GRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRW 550
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGF 966
+ ++K L+ +KPVV+ GD+NV+H ID+ P N +GFT +ER+ + L LGF
Sbjct: 551 EKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610
Query: 967 LDVHRHLYPNHR-IYTYWPYY-DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D RHLYP+ + YT+W Y + ++ GWRLDY L+S++ + + EI GSDH
Sbjct: 611 VDTFRHLYPDRKGAYTFWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH 670
Query: 1025 APQILYLNL 1033
P ++ N+
Sbjct: 671 CPITIFFNI 679
>sp|P37454|EXOA_BACSU Exodeoxyribonuclease OS=Bacillus subtilis (strain 168) GN=exoA PE=1
SV=1
Length = 252
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 51/301 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K+ SWNVNG+RA +++ D S++++ D ++ C+QE + ++ PE
Sbjct: 1 MKLISWNVNGLRA-----------VMRKMDFLSYLKEEDADIICLQETKIQDGQVDLQPE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
YH +W ++GY+G AV SK +P++V +G G EH +
Sbjct: 50 DYHVYWNYAVKKGYSGTAVFSKQEPLQVIYGI---------------GVEEHDQE----- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
GRV+T+E+E +++ VY P ++ L + ++ W L ++
Sbjct: 90 ------------------GRVITLEFENVFVMTVYTPNSRRGLERIDYRMQWEEALLSYI 131
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
L++ KPV+L GDLNVAH ID+ P N +GF+ QER F+ FL+ GF+D RH+Y
Sbjct: 132 LELDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGFVDSFRHVY 191
Query: 975 PN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
P+ Y++W Y + GWR+DYF++S+ LK + D I DV GSDH P L +N
Sbjct: 192 PDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVMGSDHCPVELIIN 251
Query: 1033 L 1033
+
Sbjct: 252 I 252
>sp|A0MTA1|APEX1_DANRE DNA-(apurinic or apyrimidinic site) lyase OS=Danio rerio GN=apex1
PE=1 SV=1
Length = 310
Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats.
Identities = 118/328 (35%), Positives = 161/328 (49%), Gaps = 61/328 (18%)
Query: 711 PIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMR 770
PI+ + DP L K D N KI SWNV+G+RAW + K+G ++R
Sbjct: 35 PIL-YEDPPEKLTSK---DGRAANMKITSWNVDGLRAWVK------------KNGLDWVR 78
Query: 771 QHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHG 825
+ D ++ C+QE +C + LP PE H +W ++GY+GVA+L KT+P+ VT+G
Sbjct: 79 KEDPDILCLQETKCAEKALPADITGMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYG 138
Query: 826 FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYL 885
G EH + GRV+T E+ F+L
Sbjct: 139 I---------------GKEEHDKE-----------------------GRVITAEFPDFFL 160
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ R +L L+ KP+VL GDLNVAH ID+ P N
Sbjct: 161 VTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNR 220
Query: 946 GKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLIS 1003
+GFT +ER F+ L+ GF D R LYP+ YT+W Y + SK GWRLDYF++S
Sbjct: 221 KNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLS 280
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
L L D +I GSDH P L+L
Sbjct: 281 SALLPGLCDSKIRNTAMGSDHCPITLFL 308
>sp|P45951|ARP_ARATH Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP
PE=2 SV=2
Length = 536
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 172/343 (50%), Gaps = 72/343 (20%)
Query: 716 NDPFRILEHKRRQ-DQYPWN---------------FKIGSWNVNGIRAWSQVNKLFTSIF 759
++P+ +L HK+ Q D +N K+ +WNVNG+R + F+++
Sbjct: 241 SEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNGLRGLLKFES-FSALQ 299
Query: 760 LQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP----EGY-HAFWFPG-TRQGYAGVAV 813
L Q++ F ++ C+QE + ++ + E +GY H+FW ++ GY+G A+
Sbjct: 300 LAQRENF--------DILCLQETKLQVKDVEEIKKTLIDGYDHSFWSCSVSKLGYSGTAI 351
Query: 814 LSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG 873
+S+ KP+ V +G + G D E G
Sbjct: 352 ISRIKPLSVRYGTGLS-----------------GHDTE---------------------G 373
Query: 874 RVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSLNEIKPVVLAGDLNVA 932
R++T E++ FYL+N Y P + + L LS ++ W+ L H+K L + KPVVL GDLN A
Sbjct: 374 RIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCA 433
Query: 933 HNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK 991
H ID+ P N +GFTI+ER F +N LD GF+D R +P YTYW Y K
Sbjct: 434 HEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRK 493
Query: 992 M-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
KGWRLDYFL+S+ + +++ D I D+ GSDH P L L L
Sbjct: 494 TNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>sp|A2T7I6|APEX1_PONPY DNA-(apurinic or apyrimidinic site) lyase OS=Pongo pygmaeus GN=APEX1
PE=3 SV=1
Length = 318
Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 148/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L + L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>sp|P23196|APEX1_BOVIN DNA-(apurinic or apyrimidinic site) lyase OS=Bos taurus GN=APEX1 PE=1
SV=2
Length = 318
Score = 176 bits (447), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 147/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 62 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPVELQ 109
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E H +W P ++GY+GV +LS+ P++V++G G EH D
Sbjct: 110 ELSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH--D 152
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E GRV+ EY+ F LV Y P A L L + W+
Sbjct: 153 QE---------------------GRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEA 191
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 192 FRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTD 251
Query: 969 VHRHLYPN-HRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S+ + L D +I GSDH P
Sbjct: 252 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCP 311
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 312 ITLYLAL 318
>sp|A2T6Y4|APEX1_PANTR DNA-(apurinic or apyrimidinic site) lyase OS=Pan troglodytes GN=APEX1
PE=3 SV=1
Length = 318
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>sp|A1YFZ3|APEX1_PANPA DNA-(apurinic or apyrimidinic site) lyase OS=Pan paniscus GN=APEX1
PE=3 SV=1
Length = 318
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>sp|P27695|APEX1_HUMAN DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1
PE=1 SV=2
Length = 318
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P H +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GDEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>sp|P43138|APEX1_RAT DNA-(apurinic or apyrimidinic site) lyase OS=Rattus norvegicus
GN=Apex1 PE=1 SV=2
Length = 317
Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 109 ELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E+E F LV Y P A L L + W+
Sbjct: 154 -----------------------GRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLAD 250
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 251 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>sp|P28352|APEX1_MOUSE DNA-(apurinic or apyrimidinic site) lyase OS=Mus musculus GN=Apex1
PE=1 SV=2
Length = 317
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 112/307 (36%), Positives = 146/307 (47%), Gaps = 58/307 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP---- 790
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 61 LKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQ 108
Query: 791 ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
E P H +W P ++GY+GV +LS+ P++V++G G EH +
Sbjct: 109 ELPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI---------------GEEEHDQE 153
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
GRV+ E+E F LV Y P A L L + W+
Sbjct: 154 -----------------------GRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEA 190
Query: 910 LRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLD 968
R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L + D
Sbjct: 191 FRKFLKDLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLAD 250
Query: 969 VHRHLYPNHR-IYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSDH P
Sbjct: 251 SFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCP 310
Query: 1027 QILYLNL 1033
LYL L
Sbjct: 311 ITLYLAL 317
>sp|A1YES6|APEX1_GORGO DNA-(apurinic or apyrimidinic site) lyase OS=Gorilla gorilla gorilla
GN=APEX1 PE=3 SV=1
Length = 318
Score = 174 bits (440), Expect = 4e-42, Method: Composition-based stats.
Identities = 111/310 (35%), Positives = 147/310 (47%), Gaps = 58/310 (18%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 59 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 106
Query: 791 ---ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
E P + +W P ++GY+GV +LS+ P++V++G G EH
Sbjct: 107 ELQELPGLSYQYWSAPXXKEGYSGVGLLSRQCPLKVSYGI---------------GEEEH 151
Query: 847 GSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLW 906
+ GRV+ E++ F LV Y P A L L + W
Sbjct: 152 DQE-----------------------GRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRW 188
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LG 965
+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F L +
Sbjct: 189 DEAFRRFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 966 FLDVHRHLYPNH-RIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
D RHLYPN YT+W Y + SK GWRLDYFL+S L L D +I GSD
Sbjct: 249 LADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSD 308
Query: 1024 HAPQILYLNL 1033
H P LYL L
Sbjct: 309 HCPITLYLAL 318
>sp|P51173|APEA_DICDI DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium discoideum
GN=apeA PE=2 SV=2
Length = 361
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 57/306 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--EC 792
KI SWNV G + S ++K FT ++ + + +V C+QE + + +
Sbjct: 105 MKIISWNVAGFK--SVLSKGFTE----------YVEKENPDVLCLQETKINPSNIKKDQM 152
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
P+GY + ++G+ G VL+K KP +T G G + NE
Sbjct: 153 PKGYEYHFIEADQKGHHGTGVLTKKKPNAITFGI-----------GIAKHDNE------- 194
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKLL-WNSFL 910
GRV+T+EY+QFY+VN Y P A L L ++ W+
Sbjct: 195 --------------------GRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDF 234
Query: 911 RGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ +L+ LN KP++ GDLNVAH ID+ P TN +GFTI+ER FSNFL+ G++D +
Sbjct: 235 QAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKGYVDSY 294
Query: 971 RHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIH-GDVEGSDHAPQ 1027
RH P YT+W Y SK GWRLDYF++SK+L + H V GSDH P
Sbjct: 295 RHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMGSDHCPI 354
Query: 1028 ILYLNL 1033
+ ++L
Sbjct: 355 GVVVDL 360
>sp|P0A2X4|EXOA_STRR6 Exodeoxyribonuclease OS=Streptococcus pneumoniae (strain ATCC BAA-255
/ R6) GN=exoA PE=3 SV=1
Length = 275
Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 58/316 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQK---DGFSFMRQHDLNVFCIQEIRCP------ 785
K+ SWN++ + N TS + K + + + ++ IQE +
Sbjct: 1 MKLISWNIDSL------NAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTK 54
Query: 786 --LEKLPECPEGYHAFWFPG---TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFN 840
+E L E GY W R+GYAG L K
Sbjct: 55 KHVEILEELFPGYENTWRSSQEPARKGYAGTMFLYK------------------------ 90
Query: 841 RGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSML 900
++ S PE+ D +GR++T+E++ F++ VY P A + L L
Sbjct: 91 -------KELTPTISFPEIGAPSTMDL----EGRIITLEFDAFFVTQVYTPNAGDGLKRL 139
Query: 901 SVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
+ +W++ +L L++ KPV+ GD NVAHN ID+A P +N GFT +ER F+N
Sbjct: 140 EERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 961 FLDLGFLDVHRHLYPN-HRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHG 1017
L GF D RH++ + YT+W + SK+ GWR+DY+L S ++ ++ ++
Sbjct: 200 LLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMID 259
Query: 1018 DVEGSDHAPQILYLNL 1033
DH P +L ++L
Sbjct: 260 SGARQDHTPIVLEIDL 275
>sp|P0A2X3|EXOA_STRPN Exodeoxyribonuclease OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=exoA PE=3 SV=1
Length = 275
Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 58/316 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQK---DGFSFMRQHDLNVFCIQEIRCP------ 785
K+ SWN++ + N TS + K + + + ++ IQE +
Sbjct: 1 MKLISWNIDSL------NAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTK 54
Query: 786 --LEKLPECPEGYHAFWFPG---TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFN 840
+E L E GY W R+GYAG L K
Sbjct: 55 KHVEILEELFPGYENTWRSSQEPARKGYAGTMFLYK------------------------ 90
Query: 841 RGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSML 900
++ S PE+ D +GR++T+E++ F++ VY P A + L L
Sbjct: 91 -------KELTPTISFPEIGAPSTMDL----EGRIITLEFDAFFVTQVYTPNAGDGLKRL 139
Query: 901 SVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
+ +W++ +L L++ KPV+ GD NVAHN ID+A P +N GFT +ER F+N
Sbjct: 140 EERQVWDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 961 FLDLGFLDVHRHLYPN-HRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIHG 1017
L GF D RH++ + YT+W + SK+ GWR+DY+L S ++ ++ ++
Sbjct: 200 LLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMID 259
Query: 1018 DVEGSDHAPQILYLNL 1033
DH P +L ++L
Sbjct: 260 SGARQDHTPIVLEIDL 275
>sp|P87175|APN2_SCHPO DNA-(apurinic or apyrimidinic site) lyase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=apn2 PE=1 SV=1
Length = 523
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 55/328 (16%)
Query: 735 FKIGSWNVNGIR------AWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK 788
+I SWNVNGI+ W++ N + IF ++ +V C+QE++ +
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNS-YKEIF----------QELQADVICVQELKMQKDS 49
Query: 789 LPE---CPEGYHAFW-FPGTRQGYAGVAVLSKTK---PVRVTHGFSMKVGGVVHTHGFNR 841
P+ EG+ +++ FP R+GY+GV K PV+ G + G++ G
Sbjct: 50 FPQQYAVVEGFDSYFTFPKIRKGYSGVGFYVKKDVAIPVKAEEG----ITGILPVRGQKY 105
Query: 842 GSNEHGSDMESGPSHPEL----TTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKED 896
+E P H ++ I A+ ID +GR + ++++ F L+ VY P +
Sbjct: 106 SYSE-------APEHEKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGE 158
Query: 897 LSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGF-TIQ 953
+ L + + LR ++ L + ++L GD+N+ N ID A + +S +I
Sbjct: 159 -NRLEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIM 217
Query: 954 E-----RNYFSNFLDLGFLDVHRHLYPNHR-IYTYW--PYYDRPSKMKGWRLDYFLISKQ 1005
E R+ LD+ R +P + ++T W RP+ G R+DY L +
Sbjct: 218 ESRQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNY-GTRIDYTLATPD 276
Query: 1006 LKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L + D +I +V GSDH P +YL+L
Sbjct: 277 LLPWVQDADIMAEVMGSDHCP--VYLDL 302
>sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=APN2 PE=1 SV=1
Length = 520
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 152/353 (43%), Gaps = 82/353 (23%)
Query: 739 SWNVNGIRAW------SQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC 792
++NVNGIR + SQ+N+ S+F F R ++ QE++ EKL
Sbjct: 21 TFNVNGIRTFFHYQPFSQMNQSLRSVF-------DFFRA---DIITFQELKT--EKLSIS 68
Query: 793 P----EGYHAFW-FPGTRQGYAGVA----VLSKTKPVRVTHGFSM-----KVGGVVHTHG 838
+G+++F P TR+GY+GV + K P+ H + + G +
Sbjct: 69 KWGRVDGFYSFISIPQTRKGYSGVGCWIRIPEKNHPL--YHALQVVKAEEGITGYLTIKN 126
Query: 839 FNRGSNEHGSDMESGPSHPELTTIQYADASGID---DGRVMTVEYE-QFYLVNVYAPA-- 892
+ + +D+ G + + S ++ +GR + VE +++VY PA
Sbjct: 127 GKHSAISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANS 186
Query: 893 -AKEDLSMLSVKLLWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVA-------LPLT 943
+ E+ M ++ L L +++L++I K +VL GD+NV + ID A +P+T
Sbjct: 187 NSSEEGEMFRLRFL--KVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPIT 244
Query: 944 N-LGKSGFTIQERNYFSNFL------------------------DLGFL-DVHRHLYPNH 977
+ +G + Q R+ F+ G L D R + +
Sbjct: 245 DPMGGTKLEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRN 304
Query: 978 RI--YTYWPYYD--RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
R+ YT W RPS G R+D+ L+S +L+ + +I D+ GSDH P
Sbjct: 305 RLKMYTVWNMLKNLRPSNY-GSRIDFILVSLKLERCIKAADILPDILGSDHCP 356
>sp|P44318|EX3_HAEIN Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=xthA PE=3 SV=1
Length = 267
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 71/311 (22%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
K S+N+NG+RA + ++L I Q D V +QEI+ E P E E
Sbjct: 2 KFISFNINGLRA--RPHQLEAIIEKYQPD-----------VIGLQEIKVADEAFPYEITE 48
Query: 795 --GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GYH F ++G+ GVA+L+K +P + GF +D E
Sbjct: 49 NLGYHVF--HHGQKGHYGVALLTKQEPKVIRRGFP--------------------TDNED 86
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDL--SMLSVKLLWNSFL 910
I AD + E+ ++N Y P + + K + + L
Sbjct: 87 AQKR-----IIMAD---------LETEFGLLTVINGYFPQGESRAHETKFPAKEKFYADL 132
Query: 911 RGHL-KSLNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYFSNFLD 963
+ +L K ++ P+++ GD+N++ + +D+ + N GK F +ER ++ D
Sbjct: 133 QQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLYD 192
Query: 964 LGFLDVHRHLYPNHRIYTYWPYYDRPSKM----KGWRLDYFLISKQLKSHLSDLEIHGDV 1019
G D R L P W +D SK +G R+D+ L+S++L D+ I D+
Sbjct: 193 YGLEDSFRKLNPTANDKFSW--FDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDI 250
Query: 1020 EG----SDHAP 1026
SDHAP
Sbjct: 251 RAMEKPSDHAP 261
>sp|Q5E9N9|APEX2_BOVIN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2
PE=2 SV=1
Length = 514
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 39/318 (12%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP- 793
++ SWN+NGIR+ Q + + + D ++ C+QE + + L E P
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTE-PL 60
Query: 794 ---EGYHAFW-FPGTRQGYAGVAVLSK--TKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
EGY++++ F R GY+GVA K PV G S G++ T + G +
Sbjct: 61 AIIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLS----GLLSTQNGDVGCYGNM 116
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKED-LSMLSVKL 904
D + EL + + + ++ T E ++ L+NVY P A L+ K+
Sbjct: 117 DDF----TQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKM 172
Query: 905 LWNSFLRGHLKSLNEIKP-VVLAGDLNVAHNHID--VALPLTNLGKSGFTIQERNYFSNF 961
+ L+ ++L V++ GDLN AH ID A+ + + R +
Sbjct: 173 RFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEED----PGRKWMDGL 228
Query: 962 L-DLG---------FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLK-S 1008
L +LG F+D +R P + +T W + G RLDY L + L
Sbjct: 229 LSNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVID 288
Query: 1009 HLSDLEIHGDVEGSDHAP 1026
+ +V GSDH P
Sbjct: 289 TFQSSFLLPEVMGSDHCP 306
>sp|Q68G58|APEX2_MOUSE DNA-(apurinic or apyrimidinic site) lyase 2 OS=Mus musculus GN=Apex2
PE=1 SV=1
Length = 516
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 138/332 (41%), Gaps = 54/332 (16%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-----FMRQHDLNVFCIQEIRCPLEKL 789
++ SWN+NGIR+ Q + Q+ + + D ++ C+QE + + L
Sbjct: 2 LRVVSWNINGIRSPLQ------GLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVL 55
Query: 790 PECP----EGYHAFWFPGTRQ-GYAGVAVLSK--TKPVRVTHGFSMKVGGVVHTHGFNRG 842
E P EGY++++ + GY+GVA K PV G S GV T + G
Sbjct: 56 TE-PLAIVEGYNSYFSFSRSRSGYSGVATFCKDSATPVAAEEGLS----GVFATLNGDIG 110
Query: 843 SNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKED-LSM 899
+ + + EL + + + ++ T+E ++ L+NVY P A
Sbjct: 111 CYGNMDEF----TQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPER 166
Query: 900 LSVKLLWNSFLRGHLKSLNEIKP-VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF 958
L+ K+ + L+ ++L V++ GDLN AH ID + S E +
Sbjct: 167 LTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPID------HCDASSLECFEEDPG 220
Query: 959 SNFLD-------------LG-FLDVHRHLYP-NHRIYTYWPYYDRPSKMK-GWRLDYFLI 1002
++D +G F+D +R+L+P R +T W + G RLDY L
Sbjct: 221 RKWMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLG 280
Query: 1003 SKQLKSHLSDLE-IHGDVEGSDHAPQILYLNL 1033
+ L + +V GSDH P LN+
Sbjct: 281 DRALVIDTFQASFLLPEVMGSDHCPVGAVLNV 312
>sp|P09030|EX3_ECOLI Exodeoxyribonuclease III OS=Escherichia coli (strain K12) GN=xthA
PE=1 SV=4
Length = 268
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 124/318 (38%), Gaps = 83/318 (26%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-----PLEKL 789
K S+N+NG+RA + + + +H +V +QE + PLE++
Sbjct: 1 MKFVSFNINGLRARPHQLE-------------AIVEKHQPDVIGLQETKVHDDMFPLEEV 47
Query: 790 PECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ GY+ F+ ++G+ GVA+L+K P+ V GF G D
Sbjct: 48 AKL--GYNVFYH--GQKGHYGVALLTKETPIAVRRGFP-------------------GDD 84
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYEQFY----LVNVYAPAA--KEDLSMLSVK 903
E+ R++ E ++N Y P ++ K
Sbjct: 85 EEA-------------------QRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAK 125
Query: 904 LLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERN 956
+ L+ +L++ L PV++ GD+N++ +D+ + N GK F +ER
Sbjct: 126 AQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE 185
Query: 957 YFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM----KGWRLDYFLISKQLKSHLS- 1011
+ + G +D RH P W +D SK +G R+D L S+ L
Sbjct: 186 WMDRLMSWGLVDTFRHANPQTADRFSW--FDYRSKGFDDNRGLRIDLLLASQPLAECCVE 243
Query: 1012 ---DLEIHGDVEGSDHAP 1026
D EI + SDHAP
Sbjct: 244 TGIDYEIRSMEKPSDHAP 261
>sp|Q9UBZ4|APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2
PE=1 SV=1
Length = 518
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 132/324 (40%), Gaps = 51/324 (15%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS------FMRQHDLNVFCIQEIRCPLEK 788
++ SWN+NGIR + + Q+ + + + D ++ C+QE + +
Sbjct: 2 LRVVSWNINGIR------RPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDA 55
Query: 789 LPECP----EGYHAFW-FPGTRQGYAGVAVLSK--TKPVRVTHGFSMKVGGVVHTHGFNR 841
L E P EGY++++ F R GY+GVA K PV G S G+ T +
Sbjct: 56 LTE-PLAIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLS----GLFATQNGDV 110
Query: 842 GSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDLS- 898
G + + + EL + + + ++ T E ++ L+NVY P A
Sbjct: 111 GCYGNMDEF----TQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPE 166
Query: 899 MLSVKLLWNSFLRGHLKSLNEIKP-VVLAGDLNVAHNHID--VALPLTNLGKSGFTIQER 955
L K+ + L+ ++L V++ GDLN AH ID A+ L + R
Sbjct: 167 RLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEED----PGR 222
Query: 956 NYFSNFL-DLG---------FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLIS 1003
+ + L +LG F+D +R P +T W + G RLDY L
Sbjct: 223 KWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGD 282
Query: 1004 KQLKSHLSDLE-IHGDVEGSDHAP 1026
+ L + +V GSDH P
Sbjct: 283 RTLVIDTFQASFLLPEVMGSDHCP 306
>sp|P0A1A9|EX3_SALTY Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=xthA PE=3 SV=1
Length = 268
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 83/318 (26%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-----PLEKL 789
K S+N+NG+RA + + + +H +V +QE + PLE++
Sbjct: 1 MKFVSFNINGLRARPHQLE-------------AIVEKHQPDVIGLQETKVHDEMFPLEEV 47
Query: 790 PECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ GY+ F+ ++G+ GVA+L+K P+ V RG + G +
Sbjct: 48 AKL--GYNVFYH--GQKGHYGVALLTKATPISV-----------------RRGFPDDGEE 86
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYE----QFYLVNVYAPAA--KEDLSMLSVK 903
+ R++ E ++N Y P ++ K
Sbjct: 87 AQR---------------------RIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAK 125
Query: 904 LLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERN 956
+ L+ +L++ L PV++ GD+N++ +D+ + N GK F +ER
Sbjct: 126 AQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE 185
Query: 957 YFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM----KGWRLDYFLISKQLKSHLSD 1012
+ S L G +D R P W +D SK +G R+D L S L ++
Sbjct: 186 WMSRLLKWGLVDTFRQANPQTMDKFSW--FDYRSKGFVDNRGLRIDLLLASAPLAERCAE 243
Query: 1013 LEIHGDVEG----SDHAP 1026
I D+ SDHAP
Sbjct: 244 TGIDYDIRSMEKPSDHAP 261
>sp|P0A1B0|EX3_SALTI Exodeoxyribonuclease III OS=Salmonella typhi GN=xthA PE=3 SV=1
Length = 268
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 83/318 (26%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-----PLEKL 789
K S+N+NG+RA + + + +H +V +QE + PLE++
Sbjct: 1 MKFVSFNINGLRARPHQLE-------------AIVEKHQPDVIGLQETKVHDEMFPLEEV 47
Query: 790 PECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+ GY+ F+ ++G+ GVA+L+K P+ V RG + G +
Sbjct: 48 AKL--GYNVFYH--GQKGHYGVALLTKATPISV-----------------RRGFPDDGEE 86
Query: 850 MESGPSHPELTTIQYADASGIDDGRVMTVEYE----QFYLVNVYAPAA--KEDLSMLSVK 903
+ R++ E ++N Y P ++ K
Sbjct: 87 AQR---------------------RIIMAEIPSPLGNITVINGYFPQGESRDHPLKFPAK 125
Query: 904 LLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERN 956
+ L+ +L++ L PV++ GD+N++ +D+ + N GK F +ER
Sbjct: 126 AQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEERE 185
Query: 957 YFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKM----KGWRLDYFLISKQLKSHLSD 1012
+ S L G +D R P W +D SK +G R+D L S L ++
Sbjct: 186 WMSRLLKWGLVDTFRQANPQTMDKFSW--FDYRSKGFVDNRGLRIDLLLASAPLAERCAE 243
Query: 1013 LEIHGDVEG----SDHAP 1026
I D+ SDHAP
Sbjct: 244 TGIDYDIRSMEKPSDHAP 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,580,598
Number of Sequences: 539616
Number of extensions: 16922986
Number of successful extensions: 44551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 42839
Number of HSP's gapped (non-prelim): 1789
length of query: 1033
length of database: 191,569,459
effective HSP length: 128
effective length of query: 905
effective length of database: 122,498,611
effective search space: 110861242955
effective search space used: 110861242955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)