Query psy12564
Match_columns 1033
No_of_seqs 204 out of 1493
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 22:34:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.2E-47 2.7E-52 407.4 18.8 248 735-1033 1-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 2.9E-46 6.2E-51 394.4 25.7 247 735-1031 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 7.4E-39 1.6E-43 335.5 22.7 246 735-1033 1-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 1.9E-37 4E-42 322.2 22.9 244 735-1031 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 1.5E-35 3.3E-40 303.8 23.8 247 735-1032 1-255 (255)
6 COG0177 Nth Predicted EndoIII- 99.9 8E-29 1.7E-33 257.4 -1.1 131 574-712 60-208 (211)
7 PRK05421 hypothetical protein; 99.8 6.2E-19 1.3E-23 187.1 19.9 211 732-1033 41-261 (263)
8 KOG1294|consensus 99.8 5.1E-19 1.1E-23 195.2 15.3 259 727-1033 56-335 (335)
9 KOG1921|consensus 99.8 5.7E-21 1.2E-25 200.8 -2.1 131 572-709 108-259 (286)
10 PRK10702 endonuclease III; Pro 99.7 5.3E-19 1.2E-23 184.3 -1.6 130 573-710 59-206 (211)
11 COG3568 ElsH Metal-dependent h 99.7 1.3E-15 2.9E-20 163.2 19.2 223 734-1033 9-257 (259)
12 PF03372 Exo_endo_phos: Endonu 99.6 3.6E-16 7.8E-21 153.1 8.2 79 738-823 1-88 (249)
13 TIGR03395 sphingomy sphingomye 99.6 3.2E-15 7E-20 161.5 16.0 160 735-934 1-191 (283)
14 PLN03144 Carbon catabolite rep 99.6 4.3E-15 9.3E-20 174.7 17.4 187 731-935 251-470 (606)
15 PTZ00297 pantothenate kinase; 99.6 1.4E-14 3.1E-19 183.7 22.9 247 729-1033 5-314 (1452)
16 PRK15251 cytolethal distending 99.5 3.5E-13 7.7E-18 145.6 21.0 148 733-935 23-199 (271)
17 KOG3873|consensus 99.5 2.1E-14 4.6E-19 158.3 8.3 244 732-1033 6-292 (422)
18 PRK13910 DNA glycosylase MutY; 99.5 9.2E-16 2E-20 166.9 -2.5 129 573-710 23-169 (289)
19 PRK10880 adenine DNA glycosyla 99.4 1.7E-14 3.7E-19 160.6 -2.9 129 573-710 60-211 (350)
20 TIGR01084 mutY A/G-specific ad 99.3 6.7E-14 1.4E-18 151.5 -2.2 129 573-710 56-207 (275)
21 TIGR01083 nth endonuclease III 99.3 8E-14 1.7E-18 142.7 -2.3 121 573-699 56-191 (191)
22 PF14529 Exo_endo_phos_2: Endo 99.3 5.9E-12 1.3E-16 115.5 9.8 119 883-1028 1-119 (119)
23 KOG2756|consensus 99.3 1.5E-11 3.2E-16 132.2 11.1 231 730-1032 95-348 (349)
24 COG3021 Uncharacterized protei 99.2 9.5E-11 2.1E-15 128.6 10.1 218 731-1033 85-307 (309)
25 KOG2338|consensus 99.1 6.9E-10 1.5E-14 127.2 14.8 171 733-935 115-307 (495)
26 smart00476 DNaseIc deoxyribonu 99.1 1.3E-09 2.9E-14 118.6 15.9 82 733-823 16-109 (276)
27 PRK13913 3-methyladenine DNA g 99.1 4.1E-12 8.8E-17 134.0 -4.6 114 574-693 68-215 (218)
28 PRK01229 N-glycosylase/DNA lya 99.0 1.6E-11 3.4E-16 128.8 -2.2 92 576-674 65-183 (208)
29 smart00128 IPPc Inositol polyp 98.6 8.7E-07 1.9E-11 97.8 16.2 61 871-934 126-195 (310)
30 KOG0620|consensus 98.5 2E-07 4.3E-12 105.2 8.8 89 734-822 19-120 (361)
31 COG5239 CCR4 mRNA deadenylase, 98.4 1E-06 2.2E-11 98.6 10.8 83 734-817 30-131 (378)
32 smart00478 ENDO3c endonuclease 98.3 3.3E-08 7.1E-13 96.7 -3.2 110 574-689 23-148 (149)
33 COG1194 MutY A/G-specific DNA 98.3 1.7E-07 3.6E-12 104.7 -0.1 138 573-720 64-226 (342)
34 COG2231 Uncharacterized protei 98.2 4.7E-08 1E-12 102.5 -5.4 127 575-709 63-212 (215)
35 cd00056 ENDO3c endonuclease II 98.2 1.4E-07 3.1E-12 93.0 -2.5 110 573-688 31-158 (158)
36 COG2374 Predicted extracellula 98.1 5.4E-05 1.2E-09 91.3 16.3 126 882-1033 622-788 (798)
37 TIGR03252 uncharacterized HhH- 98.0 4.7E-07 1E-11 93.5 -2.0 66 574-643 51-134 (177)
38 TIGR00588 ogg 8-oxoguanine DNA 96.8 9.6E-05 2.1E-09 82.1 -4.1 85 573-663 164-264 (310)
39 PF00633 HHH: Helix-hairpin-he 96.7 0.00026 5.7E-09 54.1 -1.0 28 611-642 2-29 (30)
40 KOG0566|consensus 96.5 0.059 1.3E-06 67.3 16.1 48 882-932 674-726 (1080)
41 KOG2457|consensus 96.4 0.00081 1.8E-08 76.4 0.2 108 595-711 182-309 (555)
42 KOG1294|consensus 93.0 0.29 6.3E-06 55.9 8.1 146 871-1031 11-162 (335)
43 PLN03191 Type I inositol-1,4,5 92.5 0.8 1.7E-05 55.9 11.0 62 872-934 409-483 (621)
44 COG5411 Phosphatidylinositol 5 90.9 0.41 8.9E-06 56.2 6.2 39 993-1033 288-326 (460)
45 PF00730 HhH-GPD: HhH-GPD supe 90.7 0.026 5.6E-07 52.6 -2.9 73 572-673 27-104 (108)
46 PRK10308 3-methyl-adenine DNA 86.6 0.18 3.9E-06 56.0 -0.4 79 572-656 155-244 (283)
47 COG0122 AlkA 3-methyladenine D 60.7 2 4.3E-05 48.1 -1.2 83 572-660 144-239 (285)
48 KOG2875|consensus 56.1 4.6 9.9E-05 45.7 0.7 73 583-663 173-259 (323)
49 smart00278 HhH1 Helix-hairpin- 45.7 5.4 0.00012 29.4 -0.5 19 620-642 1-19 (26)
50 PTZ00312 inositol-1,4,5-tripho 42.0 54 0.0012 37.9 6.1 54 882-935 81-143 (356)
51 COG1796 POL4 DNA polymerase IV 41.8 5.2 0.00011 45.8 -1.7 73 605-680 78-154 (326)
52 PF02178 AT_hook: AT hook moti 40.2 12 0.00026 24.5 0.5 11 446-456 1-11 (13)
53 PF14716 HHH_8: Helix-hairpin- 36.1 3 6.5E-05 37.0 -3.7 43 593-642 23-65 (68)
54 PLN03191 Type I inositol-1,4,5 21.2 75 0.0016 39.7 3.0 39 733-783 108-149 (621)
55 PRK08609 hypothetical protein; 20.9 35 0.00076 41.8 0.3 66 584-663 62-132 (570)
56 PF14520 HHH_5: Helix-hairpin- 20.8 32 0.0007 29.6 -0.0 26 619-648 4-29 (60)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-47 Score=407.44 Aligned_cols=248 Identities=41% Similarity=0.750 Sum_probs=221.2
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV 811 (1033)
|||+||||||+|++. +.+.++|.+++|||||||||+....+++.. ..||+.++..+ .+||+||
T Consensus 1 mkI~SwNVNgiRar~-------------~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~g-qKgysGV 66 (261)
T COG0708 1 MKIASWNVNGLRARL-------------KKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHG-QKGYSGV 66 (261)
T ss_pred CeeEEEehhhHHHHH-------------HHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecC-cCCcceE
Confidence 699999999999886 459999999999999999999998888764 67996666554 4999999
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP 891 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP 891 (1033)
||+||.++..+..|+++ .... | .+||+|.+++..+.|+|+|+|
T Consensus 67 ailsr~~~~~v~~g~~~--------------~~~~--d---------------------~e~R~I~a~~~~~~v~~~Y~P 109 (261)
T COG0708 67 AILSKKPPDDVRRGFPG--------------EEED--D---------------------EEGRVIEAEFDGFRVINLYFP 109 (261)
T ss_pred EEEEccCchhhhcCCCC--------------Cccc--c---------------------ccCcEEEEEECCEEEEEEEcC
Confidence 99999998877766641 0111 2 689999999999999999999
Q ss_pred CCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCcccccccc---ccCCCCCCChHHHHHHHHHHhcCC
Q psy12564 892 AAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPL---TNLGKSGFTIQERNYFSNFLDLGF 966 (1033)
Q Consensus 892 ng~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk---~n~g~sGft~eERa~L~eLLsaGL 966 (1033)
++.. +.+++.+|++|++.|..++.++ ..+.|+|+|||||.+|.++|.++++ .+.+.++|+++||++|..|++.||
T Consensus 110 nG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~ 189 (261)
T COG0708 110 NGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGF 189 (261)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcch
Confidence 9998 7888999999999999999987 5569999999999999999999996 558899999999999999999999
Q ss_pred eehhcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCC----CCccceEEEEEC
Q psy12564 967 LDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG----SDHAPQILYLNL 1033 (1033)
Q Consensus 967 vDA~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~g----SDH~PViLdLdL 1033 (1033)
+|+||.++|+++.||||+++.+ +..+.|+||||+++|+.+...+.++.|..++++ ||||||.++|++
T Consensus 190 ~D~~R~~~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~~a~I~~~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 190 VDTFRLFHPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKDAGIDREVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred hhhhHhhCCCCCcccccccccchhhhcCceeEEEEEeCHHHHHHHHhcCccHHHhcCCCCCCcCcEEEEecC
Confidence 9999999999878999999998 777799999999999999999999999988776 999999999975
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=2.9e-46 Score=394.42 Aligned_cols=247 Identities=45% Similarity=0.803 Sum_probs=218.7
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCCCCCCceEeecCCCCCceEEEEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVL 814 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~el~GY~syfs~s~kkGysGVAIL 814 (1033)
|||+||||||+++.. .+.+.++|++++|||||||||+.....+....+||+.++....++||+||||+
T Consensus 1 mki~swNVNgir~~~------------~~~~~~~l~~~~~DIiclQEtK~~~~~~~~~~~gY~~~~~~~~~kgy~GVAi~ 68 (250)
T PRK13911 1 MKLISWNVNGLRACM------------TKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYFDFWNCAIKKGYSGVVTF 68 (250)
T ss_pred CEEEEEEeCChhHhh------------hhhHHHHHHhcCCCEEEEEeecccccccccccCCceEEEEecccCccceEEEE
Confidence 699999999998876 34699999999999999999999877665457899988865567899999999
Q ss_pred EcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcCCCc
Q psy12564 815 SKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAK 894 (1033)
Q Consensus 815 SR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlPng~ 894 (1033)
+|.++..+..+++ .+.+ | .+||++++++..++|+|+|+|+++
T Consensus 69 ~k~~~~~v~~~~~---------------~~~~--d---------------------~eGR~I~~~~~~~~l~nvY~Pn~~ 110 (250)
T PRK13911 69 TKKEPLSVSYGIN---------------IEEH--D---------------------KEGRVITCEFESFYLVNVYTPNSQ 110 (250)
T ss_pred EcCCchheEEcCC---------------CCcc--c---------------------ccCCEEEEEECCEEEEEEEecCCC
Confidence 9998777665553 1122 2 689999999999999999999998
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCeehhcccC
Q psy12564 895 EDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974 (1033)
Q Consensus 895 sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvDA~R~~~ 974 (1033)
...+++++|++|.+.|.+++.++..+.++|+|||||++|.++|.++|..+.+.+||+++||++|+.+++.||+|+||.++
T Consensus 111 ~~~~r~~~K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~ 190 (250)
T PRK13911 111 QALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFY 190 (250)
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhC
Confidence 87789999999999999999987556899999999999999999999888889999999999999999999999999999
Q ss_pred CCC-CccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEE
Q psy12564 975 PNH-RIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031 (1033)
Q Consensus 975 Pd~-g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdL 1031 (1033)
|+. +.||||+++.+ +..+.|+||||||+++.+...+..+.+.....+|||+||+++|
T Consensus 191 p~~~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~~~~~~~i~~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 191 PNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLEL 249 (250)
T ss_pred CCCCCCCccCCCcCCccccCCcceEEEEEEChHHhhhEEEEEECCCCCCCCcccEEEEe
Confidence 984 78999998876 7778999999999999999889999988877789999999986
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=7.4e-39 Score=335.54 Aligned_cols=246 Identities=27% Similarity=0.511 Sum_probs=195.2
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++.. .+.+.++|++.+|||||||||+.....++.. ..||+.++.. ..+++||
T Consensus 1 mri~T~Nv~g~~~~-------------~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~Gv 65 (268)
T PRK11756 1 MKFVSFNINGLRAR-------------PHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG--QKGHYGV 65 (268)
T ss_pred CEEEEEEcCCHHHH-------------HHHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeC--CCCCCEE
Confidence 69999999998553 3579999999999999999998765444322 4789877654 5678999
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEec----eEEEEE
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE----QFYLVN 887 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~----~LtIIN 887 (1033)
|||||+|+..+...++ .... + .++|++.+++. .+.++|
T Consensus 66 ailSr~p~~~~~~~~~---------------~~~~--~---------------------~~~r~l~~~i~~~~g~~~v~n 107 (268)
T PRK11756 66 ALLSKQTPIAVRKGFP---------------TDDE--E---------------------AQRRIIMATIPTPNGNLTVIN 107 (268)
T ss_pred EEEECCChHHeEECCC---------------Cccc--c---------------------ccCCEEEEEEEcCCCCEEEEE
Confidence 9999999876554332 0000 1 46788877663 599999
Q ss_pred EEcCCCcch--hhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCcccccccccc------CCCCCCChHHHHHH
Q psy12564 888 VYAPAAKED--LSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYF 958 (1033)
Q Consensus 888 VYlPng~sd--~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n------~g~sGft~eERa~L 958 (1033)
+|+|++... ..+...|.+|+..|..++.++ ..+.|+|+|||||+++..+|..++..+ .+..+|+++||+++
T Consensus 108 ~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~ 187 (268)
T PRK11756 108 GYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWL 187 (268)
T ss_pred EEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHH
Confidence 999997632 234557788999999998875 567899999999999999998653322 34678899999999
Q ss_pred HHHHhcCCeehhcccCCC-CCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCC----CCCccceEEEEE
Q psy12564 959 SNFLDLGFLDVHRHLYPN-HRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVE----GSDHAPQILYLN 1032 (1033)
Q Consensus 959 ~eLLsaGLvDA~R~~~Pd-~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~----gSDH~PViLdLd 1032 (1033)
..+++.||+|+||.++|. .+.||||+++.+ +..+.|+||||||+++++...+.++.|..... +|||+||+++|+
T Consensus 188 ~~l~~~~l~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~~v~~~~i~~~~~~~~~~SDH~PV~~~~~ 267 (268)
T PRK11756 188 DRLMDWGLVDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAERCVETGIDYDIRGMEKPSDHAPIWATFK 267 (268)
T ss_pred HHHHhCCcEeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHHhhheEeEEeHHHhCCCCCCCcccEEEEEe
Confidence 999988999999999997 588999998876 55678999999999999988899999875443 699999999998
Q ss_pred C
Q psy12564 1033 L 1033 (1033)
Q Consensus 1033 L 1033 (1033)
|
T Consensus 268 ~ 268 (268)
T PRK11756 268 L 268 (268)
T ss_pred C
Confidence 6
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=1.9e-37 Score=322.22 Aligned_cols=244 Identities=37% Similarity=0.758 Sum_probs=198.9
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++... ..+.++|++++|||||||||+.....+... ..||+.++.+. .|++|+
T Consensus 1 mri~t~Ni~g~~~~~-------------~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~--~g~~Gv 65 (254)
T TIGR00195 1 MKIISWNVNGLRARL-------------HKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ--KGYSGV 65 (254)
T ss_pred CEEEEEEcCcHHHhH-------------HHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC--CCcceE
Confidence 699999999986543 458999999999999999998765433322 47898777653 678899
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP 891 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP 891 (1033)
||++|.++..+..+++ ...+ + .+||++.+++.++.++|+|+|
T Consensus 66 ailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~r~i~~~~~~~~l~~~~~p 107 (254)
T TIGR00195 66 AIFSKEEPLSVRRGFG---------------VEEE--D---------------------AEGRIIMAEFDSFLVINGYFP 107 (254)
T ss_pred EEEEcCCcceEEECCC---------------Cccc--c---------------------cCCCEEEEEECCEEEEEEEcc
Confidence 9999977665544332 1111 1 578998899999999999999
Q ss_pred CCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCeeh
Q psy12564 892 AAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969 (1033)
Q Consensus 892 ng~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvDA 969 (1033)
+++. ..+++.+|.+|++.|.+++.++ ..+.|+|+|||||+.+..+|.+++..+....|+++.++++|..+++.||.|+
T Consensus 108 ~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~ 187 (254)
T TIGR00195 108 NGSRDDSEKLPYKLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDT 187 (254)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEee
Confidence 9643 3456778999999999999886 4568999999999999999998877777788999999999999998899999
Q ss_pred hcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCC----CCCCccceEEEE
Q psy12564 970 HRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDV----EGSDHAPQILYL 1031 (1033)
Q Consensus 970 ~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~----~gSDH~PViLdL 1031 (1033)
||..+|..+.||||+++.+ +..+.++||||||+++++...+.++.|.... ..|||+||+++|
T Consensus 188 ~r~~~~~~~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~~v~~~~i~~~~~~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 188 FRKFNPDEGAYSWWDYRTKARDRNRGWRIDYFLVSEPLKERCVDCGIDYDIRGSEKPSDHCPVVLEF 254 (254)
T ss_pred ecccCCCCCCCcccCCcCCccccCCceEEEEEEECHHHHhhhhEEEEcHHHhcCCCCCCcccEEEeC
Confidence 9999998889999987765 4457889999999999998889999987632 358999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-35 Score=303.79 Aligned_cols=247 Identities=40% Similarity=0.772 Sum_probs=194.0
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHH-HHHHHhcCCcEEEEeccccCCCCCCC---CCCCCceEeecCCCCCceE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDG-FSFMRQHDLNVFCIQEIRCPLEKLPE---CPEGYHAFWFPGTRQGYAG 810 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~I-id~Lre~dPDVIcLQETk~see~L~~---el~GY~syfs~s~kkGysG 810 (1033)
|||+||||+|++... +.+ .++|++.+|||||||||+.....+.. ...||..++.+....|++|
T Consensus 1 lri~t~Nv~g~~~~~-------------~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G 67 (255)
T TIGR00633 1 MKIISWNVNGLRARL-------------HKLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGAKSKGYSG 67 (255)
T ss_pred CEEEEEecccHHHHh-------------hccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeecccCCcce
Confidence 699999999987654 344 99999999999999999876433221 2578887776543357789
Q ss_pred EEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEc
Q psy12564 811 VAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYA 890 (1033)
Q Consensus 811 VAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYl 890 (1033)
+|||+|.++..+..++. ...+ + .+||.+.+++..++|+++|+
T Consensus 68 ~ailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~r~l~~~~~~~~i~~vy~ 109 (255)
T TIGR00633 68 VAILSKVEPLDVRYGFG---------------GEEH--D---------------------EEGRVITAEFDGFTVVNVYV 109 (255)
T ss_pred EEEEEcCCcceEEECCC---------------CCcc--c---------------------CCCcEEEEEECCEEEEEEEc
Confidence 99999999776654332 0011 1 57888888888999999999
Q ss_pred CCCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCee
Q psy12564 891 PAAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968 (1033)
Q Consensus 891 Png~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvD 968 (1033)
|++.. ..+++.+|.+|++.+.+.+... ..+.|+|+|||||+.+..+|+.++..+....++++.++..|+.+++.||.|
T Consensus 110 p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 189 (255)
T TIGR00633 110 PNGGSRGLERLEYKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVD 189 (255)
T ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEe
Confidence 99763 3445667888888887766543 457899999999999998888776666667778888889999999999999
Q ss_pred hhcccCCCC-CccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEE
Q psy12564 969 VHRHLYPNH-RIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032 (1033)
Q Consensus 969 A~R~~~Pd~-g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLd 1032 (1033)
+|+..+|.. +.||||+++.. ...+.++||||||+++++...+..+.+.....+|||+||+++|+
T Consensus 190 ~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 190 TFRHFNPDTEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAERVVDSYIDSEIRGSDHCPIVLELD 255 (255)
T ss_pred cchhhCCCCCCcCcCcCCccCccccCCceEEEEEEECHHHHhhhcEeEECCCCCCCCcccEEEEEC
Confidence 999998876 58999987754 34567889999999999887788888886666799999999874
No 6
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=99.94 E-value=8e-29 Score=257.38 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=122.5
Q ss_pred cccccccCCHHHHHHHhhcCcchheecccccee-----eccccccccCCchhhhhhcccccccCCCCcccchhcccCCCC
Q psy12564 574 PAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVK-----TVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTV 648 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~-----~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~ 648 (1033)
-+++|+.+++++|+++| .+++||+.||+|++ ++++|+++||++.+||++||||||| |||+|++.+|..+
T Consensus 60 t~e~l~~a~~~~l~~~I--~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~~LPGVGrK----TAnvVL~~a~g~p 133 (211)
T COG0177 60 TPEDLLNADEEELEELI--KSIGLYRNKAKNIKELARILLEKFGGEVPDTREELLSLPGVGRK----TANVVLSFAFGIP 133 (211)
T ss_pred CHHHHHcCCHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHcCCCCCchHHHHHhCCCcchH----HHHHHHHhhcCCC
Confidence 47999999999999999 78999999988875 6788999999999999999999996 9999999998877
Q ss_pred ---CCCCccccccccccC----ChHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhccCcc
Q psy12564 649 ---EPIPDSNLYNEWEYR----PPKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEVPI 712 (1033)
Q Consensus 649 ---~p~HVhRIsNRwG~v----P~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEVpI 712 (1033)
+|+|||||+||||++ |+++|++|++. ++|..+|++||.|||++| +|.|..|++. ..|++...
T Consensus 134 ~i~VDTHV~Rvs~R~gl~~~~~p~~ve~~L~~~iP~~~~~~~h~~lI~~GR~iC~ar~P~C~~C~l~--~~C~~~~~ 208 (211)
T COG0177 134 AIAVDTHVHRVSNRLGLVPGKTPEEVEEALMKLIPKELWTDLHHWLILHGRYICKARKPRCEECPLA--DLCPSAGK 208 (211)
T ss_pred cccccchHHHHHHHhCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHhhhhhccCCCCCcCcccch--hhCchhcc
Confidence 888999999999999 99999999999 799999999999999999 9999999998 99988754
No 7
>PRK05421 hypothetical protein; Provisional
Probab=99.81 E-value=6.2e-19 Score=187.07 Aligned_cols=211 Identities=21% Similarity=0.243 Sum_probs=125.0
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC-CCCCCceEeec--CCCCCc
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-CPEGYHAFWFP--GTRQGY 808 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~-el~GY~syfs~--s~kkGy 808 (1033)
.++|||+||||++..... .....+.+ +.+||||||||++........ ...||+..+.. ....++
T Consensus 41 ~~~lri~t~NI~~~~~~~------------~~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (263)
T PRK05421 41 EERLRLLVWNIYKQQRAG------------WLSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPAFVLPQHP 107 (263)
T ss_pred CCceeEEEEEcccccccc------------HHHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccccccCCCc
Confidence 368999999999887653 23444455 999999999999764321111 13445433322 335578
Q ss_pred eEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEE-EE--Ee---ce
Q psy12564 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVM-TV--EY---EQ 882 (1033)
Q Consensus 809 sGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiI-tV--Ef---~~ 882 (1033)
+|+|||||+|+..+.. +. . . .|. ...+|.+ .+ ++ ..
T Consensus 108 ~GvaiLSR~pi~~~~~-~~------------------~--~------~~~-----------~~~~r~~l~a~~~~~~g~~ 149 (263)
T PRK05421 108 SGVMTLSKAHPVYCCP-LR------------------E--R------EPW-----------LRLPKSALITEYPLPNGRT 149 (263)
T ss_pred cceeEeeecccceeec-cC------------------C--C------Ccc-----------ccCcceeEEEEEEeCCCCE
Confidence 8999999999765421 11 0 0 000 0123322 22 33 24
Q ss_pred EEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHH
Q psy12564 883 FYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962 (1033)
Q Consensus 883 LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLL 962 (1033)
+.++|+|+++..... ..+..+++.|.+.+.+. ..|+|+|||||+.... ....+..+.
T Consensus 150 l~v~ntHl~~~~~~~---~~r~~q~~~l~~~~~~~--~~p~Il~GDFN~~~~~------------------~~~~l~~~~ 206 (263)
T PRK05421 150 LLVVNIHAINFSLGV---DVYSKQLEPIGDQIAHH--SGPVILAGDFNTWSRK------------------RMNALKRFA 206 (263)
T ss_pred EEEEEECccccCcCh---HHHHHHHHHHHHHHHhC--CCCEEEEcccccCccc------------------chHHHHHHH
Confidence 899999997643221 23455667777777653 5799999999974210 012344444
Q ss_pred h-cCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 963 D-LGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 963 s-aGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
. .|+.+++ +.+.... ...+.+|||||++ ++ .+.++.+.. ...|||+||+++|.+
T Consensus 207 ~~~~l~~~~--~~~~~~~-----------~~~~~~ID~I~~~-~~--~v~~~~v~~-~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 207 RELGLKEVR--FTDDQRR-----------RAFGRPLDFVFYR-GL--NVSKASVLV-TRASDHNPLLVEFSL 261 (263)
T ss_pred HHcCCCccC--cCCcccc-----------cccCCCcceEEEC-Cc--EEEEEEcCC-CCCCCccCEEEEEEe
Confidence 3 3555542 1111000 0114689999985 44 366777763 458999999999975
No 8
>KOG1294|consensus
Probab=99.80 E-value=5.1e-19 Score=195.18 Aligned_cols=259 Identities=31% Similarity=0.557 Sum_probs=203.9
Q ss_pred cCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCC-ceEeec
Q psy12564 727 RQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGY-HAFWFP 802 (1033)
Q Consensus 727 ~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY-~syfs~ 802 (1033)
...+..-.+.|+.|||.+++...+ ..-..++....+|++|+||++..-...+.. ..|| ++++..
T Consensus 56 ~~~g~~~~~~i~~~~i~~~~~~~~------------~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~ 123 (335)
T KOG1294|consen 56 LKQGNRKVLNICPWDIAGLEACEK------------FSGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSC 123 (335)
T ss_pred HHhCCeeEeecCchhhhhhhhhhc------------cccchhccccchhhhhhhhccceeccCcceecccCCcccceeec
Confidence 334555668999999999877652 225567777889999999999864333221 6788 666665
Q ss_pred C-CCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEec
Q psy12564 803 G-TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE 881 (1033)
Q Consensus 803 s-~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~ 881 (1033)
+ ...+|.|++.+++..+..+..++.. + ...| + ..||++.+++.
T Consensus 124 ~~~~~~y~~~~~~~~~~p~~v~~~~~~-----~--------~s~h--~---------------------~~g~~i~~e~e 167 (335)
T KOG1294|consen 124 ASKKDGYSGEIDYSKFKPLKVHYGFGA-----M--------GSDH--R---------------------PVGRVIIAEFE 167 (335)
T ss_pred ccccCCccceeeeeecccceeeecccc-----c--------CCcc--C---------------------ccceEEEEeec
Confidence 3 4567899999999988877665430 0 0123 2 68999999999
Q ss_pred eEEEEEEEcCCCcchhhhHHHH--HHHHHHHHHHHHhhcC----CCCEEEeccCCCcCCccc----cccccccC-CCCCC
Q psy12564 882 QFYLVNVYAPAAKEDLSMLSVK--LLWNSFLRGHLKSLNE----IKPVVLAGDLNVAHNHID----VALPLTNL-GKSGF 950 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~erLd~R--~kFld~L~e~L~qL~a----g~PVII~GDFNaap~eiD----~adpk~n~-g~sGf 950 (1033)
.+.+++.|+|+.......+.++ .+|...+...+.++.. ..++++|||.|+.|..+| ..++..+. ..++|
T Consensus 168 ~~~l~~~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~ 247 (335)
T KOG1294|consen 168 IFILINTYVPNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGF 247 (335)
T ss_pred ceeeccccCcccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcCCCCC
Confidence 9999999999988776666666 6676777777766522 248999999999999999 45555555 68899
Q ss_pred ChHHHHHH-HHHHhcC-CeehhcccCCCCC-ccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCC-CCCCCcc
Q psy12564 951 TIQERNYF-SNFLDLG-FLDVHRHLYPNHR-IYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGD-VEGSDHA 1025 (1033)
Q Consensus 951 t~eERa~L-~eLLsaG-LvDA~R~~~Pd~g-~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~-~~gSDH~ 1025 (1033)
++++|.++ ..+++.| ++|+|+.++++.. .||+|.+..+ +.++.++|+||++|+.........++|+.. ..+||||
T Consensus 248 t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r~~~Ic~r~~~gsdh~ 327 (335)
T KOG1294|consen 248 TPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNGRRFYICSRPIHGSDHC 327 (335)
T ss_pred CHHHhhhHHHhhccCCcceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCCCCCceeeeecCccCCCCCC
Confidence 99999999 6888888 9999999999884 9999999988 788999999999999999988999999987 7789999
Q ss_pred ceEEEEEC
Q psy12564 1026 PQILYLNL 1033 (1033)
Q Consensus 1026 PViLdLdL 1033 (1033)
|+.+.|.+
T Consensus 328 pi~~~~~~ 335 (335)
T KOG1294|consen 328 PITLEFFL 335 (335)
T ss_pred CeeeeecC
Confidence 99999864
No 9
>KOG1921|consensus
Probab=99.79 E-value=5.7e-21 Score=200.79 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=115.8
Q ss_pred CCcccccccCCHHHHHHHhhcCcchheeccccceeec-----cccccccCCchhhhhhcccccccCCCCcccchhcccCC
Q psy12564 572 VLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTV-----PSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFF 646 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v-----~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~ 646 (1033)
-+-.++++.++|..|+++| +|++||..||+++|-+ .+|-+-.|.+.+||+.|||||-| -|.+++..|..
T Consensus 108 gLT~e~v~~~de~~l~~LI--~~VgFy~rKA~ylkkta~IL~d~f~gDIP~~v~dLlsLPGVGPK----Ma~L~m~~AWn 181 (286)
T KOG1921|consen 108 GLTLEAVLKIDEPTLNELI--YPVGFYTRKAKYLKKTAKILQDKFDGDIPDTVEDLLSLPGVGPK----MAHLTMQVAWN 181 (286)
T ss_pred CCCHHHHhccChHhHHhhh--hhccchHHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCCCchH----HHHHHHHHHhc
Confidence 4556888899999999999 9999999999988755 55666778888999999999996 99999999966
Q ss_pred CC----CCCCccccccccccC------ChHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhcc
Q psy12564 647 TV----EPIPDSNLYNEWEYR------PPKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 647 ~~----~p~HVhRIsNRwG~v------P~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEE 709 (1033)
.. +|.|||||+|||||| |++|-.||+.- .+|..||++||.|||.|| +|+|..|..+ ...|+-
T Consensus 182 ~i~GI~VDtHVHRi~nrlgWv~~ktkspE~TR~aLq~wLPk~lW~eIN~lLVGFGQ~iC~p~~prC~~C~~~-~~~Cps 259 (286)
T KOG1921|consen 182 KIVGICVDTHVHRICNRLGWVDTKTKSPEQTRVALQQWLPKSLWVEINHLLVGFGQTICTPRRPRCGLCLLS-RDLCPS 259 (286)
T ss_pred cceeEEeehHHHHHHHHhcccccccCCHHHHHHHHHHhCcHHHHhhhhceeecccceeeecCCCCccccccC-cccCch
Confidence 65 788999999999999 99999999998 699999999999999999 9999999883 255544
No 10
>PRK10702 endonuclease III; Provisional
Probab=99.71 E-value=5.3e-19 Score=184.30 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=112.9
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccce-----eeccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHV-----KTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~-----~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-.++++.+++++|+++| .++||+..||+++ .++..+++.+|...++|++|||||+| ||+.|+..+|..
T Consensus 59 pt~e~l~~a~~~~l~~~i--~~~G~y~~kA~~l~~~a~~i~~~~~~~~p~~~~~Ll~lpGVG~k----tA~~ill~a~~~ 132 (211)
T PRK10702 59 NTPAAMLELGVEGVKTYI--KTIGLYNSKAENVIKTCRILLEQHNGEVPEDRAALEALPGVGRK----TANVVLNTAFGW 132 (211)
T ss_pred CCHHHHHCCCHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHcCCCCCchHHHHhcCCcccHH----HHHHHHHHHcCC
Confidence 346889999999999999 6677777666654 44567788899999999999999996 999999999877
Q ss_pred C---CCCCccccccccccC----ChHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhccC
Q psy12564 648 V---EPIPDSNLYNEWEYR----PPKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEV 710 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v----P~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEV 710 (1033)
+ +|.||+||++|||++ |++++++|++. .+|..+|++++.||+.+| .|+|..||+. ..|+..
T Consensus 133 ~~~~VDt~v~Rv~~r~g~~~~~~~~~~~~~l~~~lp~~~~~~~~~~li~~Gr~~C~~~~P~C~~Cpl~--~~C~~~ 206 (211)
T PRK10702 133 PTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE--DLCEYK 206 (211)
T ss_pred CcccccchHHHHHHHhCCCCCCCHHHHHHHHHHhCCchHHHHHHHHHHHHhHHHcCCCCCCCCCCcCh--hhcCcc
Confidence 5 777999999999998 77899999887 588899999999999999 6999999999 788754
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=163.22 Aligned_cols=223 Identities=19% Similarity=0.225 Sum_probs=129.9
Q ss_pred eEEEEEecccCcccc-cccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCC----CCCC------CCCCceEeec
Q psy12564 734 NFKIGSWNVNGIRAW-SQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK----LPEC------PEGYHAFWFP 802 (1033)
Q Consensus 734 sLRIvSWNVnGLra~-~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~----L~~e------l~GY~syfs~ 802 (1033)
.++|+||||+-.... .+ +.....+.+.+++..+|||||||+...... +..+ ..+.+..|..
T Consensus 9 ~~~v~TyNih~~~~~~d~--------r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T COG3568 9 RFKVLTYNIHKGFGAFDR--------RFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSG 80 (259)
T ss_pred eeEEEEEEEEEccCccCc--------eecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccch
Confidence 389999999744433 21 123678999999999999999999853221 1111 1222222222
Q ss_pred -----CCCCCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEE
Q psy12564 803 -----GTRQGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVM 876 (1033)
Q Consensus 803 -----s~kkGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiI 876 (1033)
....+..|+|+||+.|+..+... ++ + .+..++|..
T Consensus 81 ~~~~a~~~~~~~GnaiLS~~pi~~v~~~~lp---------------------~------------------~~~~~~Rga 121 (259)
T COG3568 81 AAFGAVYGEGQHGNAILSRLPIRDVENLALP---------------------D------------------PTGLEPRGA 121 (259)
T ss_pred hhhhhhcccceeeeEEEecCcccchhhccCC---------------------C------------------CCCCCCcee
Confidence 13456789999999987765421 11 0 000234432
Q ss_pred -E--EEe---ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCC
Q psy12564 877 -T--VEY---EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGF 950 (1033)
Q Consensus 877 -t--VEf---~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGf 950 (1033)
. ++. ..+.++|+|+--. . ..|.+++..|.+.+ .+....|+|+|||||..+..-++.... .
T Consensus 122 l~a~~~~~~g~~l~V~~~HL~l~--~----~~R~~Q~~~L~~~~-~l~~~~p~vl~GDFN~~p~s~~yr~~~----~--- 187 (259)
T COG3568 122 LLAEIELPGGKPLRVINAHLGLS--E----ESRLRQAAALLALA-GLPALNPTVLMGDFNNEPGSAEYRLAA----R--- 187 (259)
T ss_pred EEEEEEcCCCCEEEEEEEecccc--H----HHHHHHHHHHHhhc-cCcccCceEEEccCCCCCCCccceecc----C---
Confidence 2 333 3799999999522 1 23556666666632 234456999999999988654331100 0
Q ss_pred ChHHHHHHHHHHhcCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCC---CCCCccce
Q psy12564 951 TIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDV---EGSDHAPQ 1027 (1033)
Q Consensus 951 t~eERa~L~eLLsaGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~---~gSDH~PV 1027 (1033)
..+.. ..++.+++....+.. .-||.+... ..||||||+++.+. +..+++..+. ..|||+||
T Consensus 188 -----~~~~~--~~~~~~~~~~a~~~~-~~tfps~~p------~lriD~Ifvs~~~~--i~~~~v~~~~~a~~aSDHlPl 251 (259)
T COG3568 188 -----SPLNA--QAALTGAFAPAVGRT-IRTFPSNTP------LLRLDRIFVSKELA--IRSVHVLTDRLARVASDHLPL 251 (259)
T ss_pred -----Cchhh--ccccccccCcccCcc-cCCCCCCCc------cccccEEEecCccc--EEEEEeecCCCccccccccce
Confidence 01111 123444443332211 124433222 23999999999876 5666666554 36999999
Q ss_pred EEEEEC
Q psy12564 1028 ILYLNL 1033 (1033)
Q Consensus 1028 iLdLdL 1033 (1033)
.++|+|
T Consensus 252 ~aeL~~ 257 (259)
T COG3568 252 LAELRL 257 (259)
T ss_pred EEEEec
Confidence 999986
No 12
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.64 E-value=3.6e-16 Score=153.08 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=46.5
Q ss_pred EEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCC--CCCCCC---CCCCceEe-ecCCCC---Cc
Q psy12564 738 GSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPL--EKLPEC---PEGYHAFW-FPGTRQ---GY 808 (1033)
Q Consensus 738 vSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~se--e~L~~e---l~GY~syf-s~s~kk---Gy 808 (1033)
|||||+++..... ...+.+.|.++|++.+||||||||+.... ..+... ..++.... ...... +.
T Consensus 1 ~T~Nv~~~~~~~~-------~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (249)
T PF03372_consen 1 MTWNVRGWNYRSD-------NDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGG 73 (249)
T ss_dssp EEEEESTHHHHHH-------HHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSS
T ss_pred CeEEeCcCccccc-------chhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccC
Confidence 7999988422210 01224679999999999999999998431 111111 12322222 221111 35
Q ss_pred eEEEEEEcCCcceEe
Q psy12564 809 AGVAVLSKTKPVRVT 823 (1033)
Q Consensus 809 sGVAILSR~PIlkVe 823 (1033)
.|+||++|.++....
T Consensus 74 ~g~~i~~r~~~~~~~ 88 (249)
T PF03372_consen 74 YGVAILSRSPIFSSV 88 (249)
T ss_dssp EEEEEEESSCCCEEE
T ss_pred ceEEEEEcccccccc
Confidence 799999999977544
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.64 E-value=3.2e-15 Score=161.45 Aligned_cols=160 Identities=20% Similarity=0.124 Sum_probs=90.7
Q ss_pred EEEEEecccCcccccccccchhhhhh-hHHHHHHHHHhcCCcEEEEeccccCCC-C-CCCC-CCCC--ceEeec------
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFL-QQKDGFSFMRQHDLNVFCIQEIRCPLE-K-LPEC-PEGY--HAFWFP------ 802 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~-krd~Iid~Lre~dPDVIcLQETk~see-~-L~~e-l~GY--~syfs~------ 802 (1033)
||||||||+.+..... + ...|. +.+.|...++..+||||||||+..... . +... ..+| ...+..
T Consensus 1 lkVmtyNv~~l~~~~~--~--~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g~~~~g~ 76 (283)
T TIGR03395 1 IKILSHNVYMLSTNLY--P--NWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGW 76 (283)
T ss_pred CeEEEEEeeeeccccc--C--CccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecccccccc
Confidence 6899999976543220 0 01122 246677778889999999999964321 0 1100 1112 111000
Q ss_pred --------CCCCCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCC
Q psy12564 803 --------GTRQGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG 873 (1033)
Q Consensus 803 --------s~kkGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seG 873 (1033)
....+.+|++||||+|+...... ++ . ..+.| ....
T Consensus 77 ~~~~g~~~~~~~~~~G~~iLSr~Pi~~~~~~~f~---------~-------~~~~d--------------------~~~~ 120 (283)
T TIGR03395 77 DKTLGNYSSSALEDGGVAIVSKWPIEEKIQYIFN---------K-------GCGAD--------------------NLSN 120 (283)
T ss_pred hhccccccccCccCCEEEEEECCCccccEEEEcc---------C-------CCCCc--------------------cccC
Confidence 01234579999999998764321 21 0 00001 0112
Q ss_pred c-EEEEEe----ceEEEEEEEcCCCcch---hhhHHHHHHHHHHHHHHHHhh--cCCCCEEEeccCCCcCC
Q psy12564 874 R-VMTVEY----EQFYLVNVYAPAAKED---LSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHN 934 (1033)
Q Consensus 874 R-iItVEf----~~LtIINVYlPng~sd---~erLd~R~kFld~L~e~L~qL--~ag~PVII~GDFNaap~ 934 (1033)
| ++.+++ ..+.|+++|+-+.... ......|..+++.|.+++.+. +.+.|+||+||||+.+.
T Consensus 121 kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~~ 191 (283)
T TIGR03395 121 KGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNIPKDETVLIGGDLNVNKG 191 (283)
T ss_pred CceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccCCCCceEEEEeeCCCCCC
Confidence 2 333333 2589999999764321 111245778889999988653 45678999999999753
No 14
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.63 E-value=4.3e-15 Score=174.65 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=104.9
Q ss_pred CCCeEEEEEecccCcc----cccccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCC--CCCC-C-CCCCCceEee
Q psy12564 731 YPWNFKIGSWNVNGIR----AWSQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPL--EKLP-E-CPEGYHAFWF 801 (1033)
Q Consensus 731 ~s~sLRIvSWNVnGLr----a~~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~se--e~L~-~-el~GY~syfs 801 (1033)
....+|||||||..-. ....|.+.+...|.. +..|++.|..++||||||||+.... ..+. . ...||..++.
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~ 330 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYK 330 (606)
T ss_pred CCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEe
Confidence 3568999999996432 112456667778887 5689999999999999999995422 1111 1 1368887776
Q ss_pred cCCC-------CCceEEEEEEcCCcceEeec--ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCC
Q psy12564 802 PGTR-------QGYAGVAVLSKTKPVRVTHG--FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDD 872 (1033)
Q Consensus 802 ~s~k-------kGysGVAILSR~PIlkVe~g--Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~se 872 (1033)
.... ....|+|||+|...+..... +. ....++...... .+..+|+ ..+..+- ++ --
T Consensus 331 ~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ie-f~~~~lslt~~~--~~s~~~~-------~~l~Rl~-kd----NV 395 (606)
T PLN03144 331 KKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVE-FNKAAQSLTEAL--IPSAQKK-------AALNRLL-KD----NV 395 (606)
T ss_pred CCCCccccccccCCceeEEEEECcceEEEEeeeee-ccchhhccCccc--cccccch-------hhhhhhc-cC----cE
Confidence 5322 23579999999987665432 11 001111100000 0000000 1110000 00 01
Q ss_pred CcEEEEEec-------------eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh--cCCCCEEEeccCCCcCCc
Q psy12564 873 GRVMTVEYE-------------QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHNH 935 (1033)
Q Consensus 873 GRiItVEf~-------------~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL--~ag~PVII~GDFNaap~e 935 (1033)
+.++.++.. .+.++|+|+-.... .-+.|..+...|.+.+.++ ..+.|+|+|||||+.|..
T Consensus 396 Aliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~---~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 396 ALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQE---LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred EEEEEEEEecccccccCCCCccEEEEEEeeeccCCc---cchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 112222221 37899999933321 1234666667777777665 246799999999998764
No 15
>PTZ00297 pantothenate kinase; Provisional
Probab=99.63 E-value=1.4e-14 Score=183.69 Aligned_cols=247 Identities=19% Similarity=0.168 Sum_probs=136.1
Q ss_pred CCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhc-CCcEEEEeccccCCCC-C------CC--------C
Q psy12564 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH-DLNVFCIQEIRCPLEK-L------PE--------C 792 (1033)
Q Consensus 729 e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~-dPDVIcLQETk~see~-L------~~--------e 792 (1033)
+.....|||+||||+.+.... ..|. .+++..+|++. ++|||||||+...... . +. .
T Consensus 5 ~~~~~~l~VlTyNv~~~~~~~-------~~~~-~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~~~l~ 76 (1452)
T PTZ00297 5 DAGCAQARVLSYNFNILPRGC-------GGFQ-HERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELK 76 (1452)
T ss_pred cCCCCceEEEEEEccccCCCc-------cccc-HHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHHHHHH
Confidence 344568999999998663211 0122 57888999994 7899999999864211 0 10 0
Q ss_pred CCCCceEeecCC---C-------CCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccch
Q psy12564 793 PEGYHAFWFPGT---R-------QGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTT 861 (1033)
Q Consensus 793 l~GY~syfs~s~---k-------kGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~ 861 (1033)
..||..+..... . -+..|+||+||+|+...... ++. . ..+ +
T Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AILSR~PI~~~~~~~l~~--------~-------~~~-~------------ 128 (1452)
T PTZ00297 77 ARGFHHYVISKQPSYLTMLRYNVCSDNGLIIASRFPIWQRGSYTFRN--------H-------ERG-E------------ 128 (1452)
T ss_pred hcCCceeEeecCccccccccCccccCCEEEEEECCChhhceeeecCc--------c-------ccc-c------------
Confidence 247754432211 1 15679999999999876542 210 0 000 0
Q ss_pred hhccccCCCCCCcE-E--EEEe-------ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHh-h---------cCCC
Q psy12564 862 IQYADASGIDDGRV-M--TVEY-------EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS-L---------NEIK 921 (1033)
Q Consensus 862 l~~~d~~~~seGRi-I--tVEf-------~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~q-L---------~ag~ 921 (1033)
..+.|. + .+++ ..+.++++|+-...... .|.+++.++.+++.. + +.+.
T Consensus 129 --------~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~----~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~ 196 (1452)
T PTZ00297 129 --------QSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP----STSSQVQETRRFVESVIANVYEQNNDGAEI 196 (1452)
T ss_pred --------cccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc----hHHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence 012222 1 2333 25899999996543321 244556666666553 1 2457
Q ss_pred CEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHh--cCCeehhcccCCC---C-CccccCCCCCC--CCCCC
Q psy12564 922 PVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD--LGFLDVHRHLYPN---H-RIYTYWPYYDR--PSKMK 993 (1033)
Q Consensus 922 PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLs--aGLvDA~R~~~Pd---~-g~YTw~S~r~n--r~~n~ 993 (1033)
|+||+||||+.- +|+.+. .. -..+-...+..+.. .++.|++...+.. + +..+|++.... +....
T Consensus 197 PvILaGDFN~~~--~~~~~~----~~--~s~e~~~ml~~l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~ 268 (1452)
T PTZ00297 197 PFVIAGDFNING--IDPHNG----GH--PTKRFQELLNELQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSST 268 (1452)
T ss_pred CEEEEeeCCCcc--cccccc----CC--ccHHHHHHHHHhhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCC
Confidence 999999999742 222110 00 01111222333332 2456665443322 1 33455553311 11122
Q ss_pred ccceeEEEEcccccccceeEEEeCC--------CCCCCccceEEEEEC
Q psy12564 994 GWRLDYFLISKQLKSHLSDLEIHGD--------VEGSDHAPQILYLNL 1033 (1033)
Q Consensus 994 GsRIDyILVS~nl~~~V~sa~I~~~--------~~gSDH~PViLdLdL 1033 (1033)
..||||||+++.+. +.++.+... .+.|||+||+++|.+
T Consensus 269 ~~riD~Ifv~~~v~--v~~~~v~~~~~~~~~~~~~~SDH~Pv~a~l~l 314 (1452)
T PTZ00297 269 PQRQDYFFVTPCVQ--VEKPRIEKFVVSSRRPYTYLSDHFGVSARLTL 314 (1452)
T ss_pred CcceeEEEEeCCce--EEEEEEecccccCCCCCCCcCcCccEEEEEEe
Confidence 35999999998764 556666321 237999999999975
No 16
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.55 E-value=3.5e-13 Score=145.62 Aligned_cols=148 Identities=12% Similarity=0.187 Sum_probs=96.4
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhc-CCcEEEEeccccCCCC--------------CCC-C----
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH-DLNVFCIQEIRCPLEK--------------LPE-C---- 792 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~-dPDVIcLQETk~see~--------------L~~-e---- 792 (1033)
...+++|||..|-.+... .-|. -.+..+|... ++||+++||+...+.. ++. +
T Consensus 23 ~~~~~~twn~qg~s~~~~------~kw~--~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~ 94 (271)
T PRK15251 23 EDYKVATWNLQGSSASTE------SKWN--VNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWN 94 (271)
T ss_pred ccceEEEeecCCCCCCCh------hhhh--hhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEE
Confidence 457999999999865431 1122 3688888875 6999999999753322 021 1
Q ss_pred -----CCCCceEeec--CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhcc
Q psy12564 793 -----PEGYHAFWFP--GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYA 865 (1033)
Q Consensus 793 -----l~GY~syfs~--s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~ 865 (1033)
.+++.++|.. ....|..|+||+||.+..++.. ++ .+.
T Consensus 95 l~~~srpgm~YiY~~aiD~~ggr~glAIlSr~~a~~~~~-l~---------------~p~-------------------- 138 (271)
T PRK15251 95 LGTRSRPNQVYIYYSRVDVGANRVNLAIVSRRRADEVIV-LR---------------PPT-------------------- 138 (271)
T ss_pred ccCccCCCceEEEEecccCCCCceeEEEEecccccceEE-ec---------------CCC--------------------
Confidence 2455554444 2346778999999999665321 11 000
Q ss_pred ccCCCCCC-cEEEEEeceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHH-hhcCCCCEEEeccCCCcCCc
Q psy12564 866 DASGIDDG-RVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK-SLNEIKPVVLAGDLNVAHNH 935 (1033)
Q Consensus 866 d~~~~seG-RiItVEf~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~-qL~ag~PVII~GDFNaap~e 935 (1033)
.+. .++.++++++.++++|+.+.+... +.+.++.+.++.. .. ...||+||||||..|+.
T Consensus 139 -----~~~Rpilgi~i~~~~ffstH~~a~~~~d-----a~aiV~~I~~~f~~~~-~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 139 -----VASRPIIGIRIGNDVFFSIHALANGGTD-----AGAIVRAVHNFFRPNM-RHINWMIAGDFNRSPDR 199 (271)
T ss_pred -----CcccceEEEEecCeEEEEeeecCCCCcc-----HHHHHHHHHHHHhhcc-CCCCEEEeccCCCCCcc
Confidence 123 355577888999999999885421 3456677777765 32 35799999999988753
No 17
>KOG3873|consensus
Probab=99.51 E-value=2.1e-14 Score=158.28 Aligned_cols=244 Identities=20% Similarity=0.257 Sum_probs=144.0
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCC--CCC-CC--CCCceEeecCCCC
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK--LPE-CP--EGYHAFWFPGTRQ 806 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~--L~~-el--~GY~syfs~s~kk 806 (1033)
.-.|||++.|++|+...++++. .+.+.+-+++.++..||+.|||++..++- +.. .. .-|..+|.. +.-
T Consensus 6 a~~lriltlN~Wgip~~Sk~R~------~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHS-Gim 78 (422)
T KOG3873|consen 6 ALELRILTLNIWGIPYVSKDRR------HRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHS-GIM 78 (422)
T ss_pred hheeeeeEeeccccccccchhH------HHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhc-ccc
Confidence 3579999999999986654321 23568899999999999999999875421 111 12 233333433 122
Q ss_pred CceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEE---EEece
Q psy12564 807 GYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMT---VEYEQ 882 (1033)
Q Consensus 807 GysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiIt---VEf~~ 882 (1033)
..|+|+|||.||...... .+ +.|+|+.- +..| +..|..+. +...+
T Consensus 79 -GaGL~vfSK~PI~~t~~~~y~----------------------lNG~p~~i-----~rGD---Wf~GK~Vgl~~l~~~g 127 (422)
T KOG3873|consen 79 -GAGLCVFSKHPILETLFHRYS----------------------LNGYPHAI-----HRGD---WFGGKGVGLTVLLVGG 127 (422)
T ss_pred -cCceEEeecCchhhhhhhccc----------------------cCCcccee-----eecc---ccccceeEEEEEeeCC
Confidence 479999999998764321 11 11111110 1111 13344332 23333
Q ss_pred --EEEEEE--EcCCCcchhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHH
Q psy12564 883 --FYLVNV--YAPAAKEDLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNY 957 (1033)
Q Consensus 883 --LtIINV--YlPng~sd~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~ 957 (1033)
+.+.|. |+|.+.+.+..+.+|..+.-.+.++++.. ..+.-||++||||..|.++.+.-
T Consensus 128 ~~v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~l----------------- 190 (422)
T KOG3873|consen 128 RMVNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHKL----------------- 190 (422)
T ss_pred EEeeeeehhccccccccCchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCccccceee-----------------
Confidence 333333 45666666678889999988999998865 56788999999999886543321
Q ss_pred HHHHHhcCCeehhcccCCCC----------------------CccccCCCCCCCCCCCccceeEEEEcccccc-cceeEE
Q psy12564 958 FSNFLDLGFLDVHRHLYPNH----------------------RIYTYWPYYDRPSKMKGWRLDYFLISKQLKS-HLSDLE 1014 (1033)
Q Consensus 958 L~eLLsaGLvDA~R~~~Pd~----------------------g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~-~V~sa~ 1014 (1033)
++.+||+|+|+..+++. +.-||-+...+.....+.||||+|+.++... ...++.
T Consensus 191 ---l~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~ 267 (422)
T KOG3873|consen 191 ---LLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVE 267 (422)
T ss_pred ---eeccchhhhHhhhchhhhcCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEE
Confidence 12345555555544432 0112221111122345789999999986532 223333
Q ss_pred EeCC------CCCCCccceEEEEEC
Q psy12564 1015 IHGD------VEGSDHAPQILYLNL 1033 (1033)
Q Consensus 1015 I~~~------~~gSDH~PViLdLdL 1033 (1033)
+... ..-|||.+++++|.+
T Consensus 268 ~t~~rvP~~d~s~SDH~Al~a~L~I 292 (422)
T KOG3873|consen 268 FTEPRVPGEDCSYSDHEALMATLKI 292 (422)
T ss_pred ecCCCCCCCCCCccchhhheeEEEe
Confidence 3321 124999999999864
No 18
>PRK13910 DNA glycosylase MutY; Provisional
Probab=99.51 E-value=9.2e-16 Score=166.92 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=108.0
Q ss_pred CcccccccCCHHHHHHHhhcCcchheecccccee-----eccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVK-----TVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~-----~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
|-.+++..+++++|.++| .++|+| .+|+|++ ++.++.+++|...++|++|||||+| ||+.|+..+|..
T Consensus 23 Pt~e~La~a~~~el~~~~--~glGyy-~RAr~L~~~A~~i~~~~~g~~P~~~~~L~~LpGIG~k----TA~aIl~~af~~ 95 (289)
T PRK13910 23 PTLKDLANAPLEEVLLLW--RGLGYY-SRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAY----TANAILCFGFRE 95 (289)
T ss_pred CCHHHHHCCCHHHHHHHH--HcCCcH-HHHHHHHHHHHHHHHHhCCCCChhHHHHHhCCCCCHH----HHHHHHHHHCCC
Confidence 456889999999999999 888887 4777765 4456778899999999999999996 999999999887
Q ss_pred C---CCCCcccccccc-ccCChHHHHhhhcC-------cccccccccccccCcccc--cCCCCCCCCcchhhhccC
Q psy12564 648 V---EPIPDSNLYNEW-EYRPPKRKKASRKN-------VFSFKLNEIHVGTGKIEN--RLGCDSSNETSYAEVEEV 710 (1033)
Q Consensus 648 ~---~p~HVhRIsNRw-G~vP~ktEkAL~k~-------~~w~~in~lLV~~Gq~iC--RPkCs~Cp~~S~aecEEV 710 (1033)
+ +|.||+||.+|| |+.+..++++|... ..|..+|..|+.||+.+| +|.|..||+. +.|...
T Consensus 96 ~~~~VD~nV~RVl~Rl~g~~~~~~~~~l~~~~~~~l~~~~~~~~nqaLm~~Ga~iC~~~P~C~~CPl~--~~C~~~ 169 (289)
T PRK13910 96 KSACVDANIKRVLLRLFGLDPNIHAKDLQIKANDFLNLNESFNHNQALIDLGALICSPKPKCAICPLN--PYCLGK 169 (289)
T ss_pred CcCcccHHHHHHHHHHhcCCCCccHHHHHHHHHHhCCccchHHHHHHHHHHhHHHcCCCCCCCCCcCh--hhhhhh
Confidence 6 666999999996 88854445444422 478889999999999999 9999999999 888655
No 19
>PRK10880 adenine DNA glycosylase; Provisional
Probab=99.39 E-value=1.7e-14 Score=160.62 Aligned_cols=129 Identities=8% Similarity=-0.023 Sum_probs=107.9
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceee-----ccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKT-----VPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~-----v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-.++|+.+++++|.++| .++|+|. +|+|++- +..+++.+|...++|++|||||++ ||+.|+..+|..
T Consensus 60 Pt~~~La~a~~eel~~~~--~glGyy~-RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~----TA~aIl~~af~~ 132 (350)
T PRK10880 60 PTVTDLANAPLDEVLHLW--TGLGYYA-RARNLHKAAQQVATLHGGEFPETFEEVAALPGVGRS----TAGAILSLSLGK 132 (350)
T ss_pred cCHHHHHCcCHHHHHHHH--HcCChHH-HHHHHHHHHHHHHHHhCCCchhhHHHHhcCCCccHH----HHHHHHHHHCCC
Confidence 447889999999999999 8888875 7777764 466778899999999999999996 999999999877
Q ss_pred C---CCCCccccccccccC-----ChHHHHhhhc-------CcccccccccccccCcccc---cCCCCCCCCcchhhhcc
Q psy12564 648 V---EPIPDSNLYNEWEYR-----PPKRKKASRK-------NVFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v-----P~ktEkAL~k-------~~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEE 709 (1033)
+ +|.||+||++|++.. +.++++.|.+ ...|..+|..++.+|+.+| +|+|..||+. ..|..
T Consensus 133 ~~~iVD~nV~RV~~Rl~~i~~~~~~~~~~~~l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~--~~C~~ 210 (350)
T PRK10880 133 HFPILDGNVKRVLARCYAVSGWPGKKEVENRLWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQ--NGCIA 210 (350)
T ss_pred CeecccHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccH--hhhHH
Confidence 6 466999999997332 4566766643 2578899999999999999 7999999999 88976
Q ss_pred C
Q psy12564 710 V 710 (1033)
Q Consensus 710 V 710 (1033)
.
T Consensus 211 ~ 211 (350)
T PRK10880 211 Y 211 (350)
T ss_pred H
Confidence 5
No 20
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=99.34 E-value=6.7e-14 Score=151.55 Aligned_cols=129 Identities=9% Similarity=-0.016 Sum_probs=104.4
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccce-----eeccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHV-----KTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~-----~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-.++|+.++++++.++| .++|++ .+|+|+ .++..+++.+|+..++|++|||||++ ||+.|+..+|..
T Consensus 56 pt~~~La~a~~eeL~~~~--~~lG~y-~RAr~L~~~A~~i~~~~~g~~p~~~~~L~~LpGIG~~----TA~~Il~~a~~~ 128 (275)
T TIGR01084 56 PTVQALANAPQDEVLKLW--EGLGYY-ARARNLHKAAQEVVEEFGGEFPQDFEDLAALPGVGRY----TAGAILSFALNK 128 (275)
T ss_pred CCHHHHHCcCHHHHHHHH--HHCCcH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHhCCCCCHH----HHHHHHHHHCCC
Confidence 457899999999999998 666664 345444 45667788899999999999999996 999999999877
Q ss_pred C---CCCCccccccccccC-----ChHHHHhh----hcC---cccccccccccccCcccc---cCCCCCCCCcchhhhcc
Q psy12564 648 V---EPIPDSNLYNEWEYR-----PPKRKKAS----RKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v-----P~ktEkAL----~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEE 709 (1033)
+ +|.||+|+.+|++.. +.++++.| +.. ..|..+|..++.+|+.+| .|.|..||+. ..|..
T Consensus 129 ~~~~vD~~v~RVl~Rl~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~n~alm~lG~~vC~~~~P~C~~Cpl~--~~C~~ 206 (275)
T TIGR01084 129 PYPILDGNVKRVLSRLFAVEGWPGKKKVENRLWTLAESLLPKADPEAFNQALMDLGAMICTRKKPKCDLCPLQ--DFCLA 206 (275)
T ss_pred CCCcchHhHHHHHHHHccCcCCCCHHHHHHHHHHHHHHHCChhhHHHHHHHHHHHhHHHcCCCCCCCCCCCCh--hhCHH
Confidence 6 555999999998544 44566653 322 478999999999999999 7999999999 88865
Q ss_pred C
Q psy12564 710 V 710 (1033)
Q Consensus 710 V 710 (1033)
.
T Consensus 207 ~ 207 (275)
T TIGR01084 207 Y 207 (275)
T ss_pred H
Confidence 4
No 21
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=99.33 E-value=8e-14 Score=142.73 Aligned_cols=121 Identities=16% Similarity=0.092 Sum_probs=99.0
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceee-----ccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKT-----VPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~-----v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+.++.|..+++++|+++| .+++++..||++++. +..+.+..|...++|+++||||+| ||+.|+.-+|..
T Consensus 56 pt~~~l~~~~~~~L~~~i--r~~G~~~~Ka~~i~~~a~~i~~~~~~~~~~~~~~L~~l~GIG~k----tA~~ill~~~~~ 129 (191)
T TIGR01083 56 PTPQALAQAGLEELEEYI--KSIGLYRNKAKNIIALCRILVERYGGEVPEDREELVKLPGVGRK----TANVVLNVAFGI 129 (191)
T ss_pred CCHHHHHcCCHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHHcCCCCchHHHHHHhCCCCcHH----HHHHHHHHHcCC
Confidence 347889999999999999 666666666666654 445567788888999999999996 999999999765
Q ss_pred C---CCCCccccccccccC----ChHHHHhhhcC---cccccccccccccCcccccCCCCCC
Q psy12564 648 V---EPIPDSNLYNEWEYR----PPKRKKASRKN---VFSFKLNEIHVGTGKIENRLGCDSS 699 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v----P~ktEkAL~k~---~~w~~in~lLV~~Gq~iCRPkCs~C 699 (1033)
+ +|.||+|+++|||+. ++++++.|+.. ..|..+|.+++.||+.+|++..+.|
T Consensus 130 ~~~~vD~~v~Ri~~r~g~~~~~~~~~~~~~l~~~~p~~~~~~~h~~li~~G~~~C~~~~P~C 191 (191)
T TIGR01083 130 PAIAVDTHVFRVSNRLGLSKGKDPDKVEEELLKLIPREFWTKLHHWLILHGRYTCKARKPLC 191 (191)
T ss_pred CccccchhHHHHHHHcCCCCCCCHHHHHHHHHHHCCchhHHHHHHHHHHHhHHhcCCCCCCC
Confidence 5 677999999999998 67777778776 4788999999999999996554444
No 22
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.33 E-value=5.9e-12 Score=115.53 Aligned_cols=119 Identities=28% Similarity=0.415 Sum_probs=64.2
Q ss_pred EEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHH
Q psy12564 883 FYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962 (1033)
Q Consensus 883 LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLL 962 (1033)
++|++||+|+.. . +..|.+.|...+...... ++||+||||+.+..|+...... ...+....-+.
T Consensus 1 i~i~~vY~pp~~-~------~~~~~~~l~~~~~~~~~~-~~Ii~GDFN~~~~~w~~~~~~~--------~~~~~l~~~~~ 64 (119)
T PF14529_consen 1 ITIISVYAPPSS-E------REEFFDQLRQLLKNLPPA-PIIIGGDFNAHHPNWDSSNTNS--------RRGEQLLDWLD 64 (119)
T ss_dssp EEEEEEE--TTS--------CHHHHHHHHHHHHCCTTS-SEEEEEE-----GGGT-SCHHH--------HHHHHHHHHHH
T ss_pred CEEEEEECCCCc-c------HHHHHHHHHHHHHhCCCC-CEEEEeECCCCchhhhhccccc--------hhHHHHHHHhh
Confidence 578999999987 1 235677888888765323 9999999999876654421100 12233334444
Q ss_pred hcCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceE
Q psy12564 963 DLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028 (1033)
Q Consensus 963 saGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PVi 1028 (1033)
+.+|.++. +....+||++... .++||++|++..+... ....+......|||+||.
T Consensus 65 ~~~l~~~~----~~~~~~T~~~~~~------~s~iD~~~~s~~~~~~-~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 65 SHNLVDLN----PPGRPPTFISNSH------GSRIDLILTSDNLLSW-CVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp HCTEEE-------TT---SEEECCC------EE--EEEEEECCGCCC-EEEEEETTSSSSSB--EE
T ss_pred hceeeeee----cCCCCCcccCCCC------CceEEEEEECChHHhc-CcEEEeCCCCCCCccCCC
Confidence 56788762 2234588876442 5799999999988754 233444455689999985
No 23
>KOG2756|consensus
Probab=99.28 E-value=1.5e-11 Score=132.20 Aligned_cols=231 Identities=17% Similarity=0.244 Sum_probs=133.2
Q ss_pred CCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCC-CCCCCCCceEeecCCCCCc
Q psy12564 730 QYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKL-PECPEGYHAFWFPGTRQGY 808 (1033)
Q Consensus 730 ~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L-~~el~GY~syfs~s~kkGy 808 (1033)
..+..+.+++||+.||.... -..+.+++..+|+-+.||||||||+-...-.. .....-|..++. ...++
T Consensus 95 ~~g~~~S~~~WnidgLdln~--------l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~~s~y~i~~~--~~~~~ 164 (349)
T KOG2756|consen 95 TQGSMFSLITWNIDGLDLNN--------LSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKRSSNYEIITG--HEEGY 164 (349)
T ss_pred hcccEEEEEEeeccccccch--------HHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHhhhheeEEEe--cccee
Confidence 33456899999999986542 11236789999999999999999986432111 111223334443 35667
Q ss_pred eEEEEEEcCCcceEee-c-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEE---EEEe--c
Q psy12564 809 AGVAVLSKTKPVRVTH-G-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVM---TVEY--E 881 (1033)
Q Consensus 809 sGVAILSR~PIlkVe~-g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiI---tVEf--~ 881 (1033)
.|.+++.+... .|.. . ++ |+ + . .-+|.+ .+++ .
T Consensus 165 ~~~~~l~~s~~-~Vks~~~i~------------------F~-N-----------------S---~M~R~L~I~Ev~v~G~ 204 (349)
T KOG2756|consen 165 FTAIMLKKSRV-KVKSQEIIP------------------FP-N-----------------S---KMMRNLLIVEVNVSGN 204 (349)
T ss_pred eeeeeeehhhc-Cccccceec------------------cC-c-----------------c---hhhheeEEEEEeecCc
Confidence 78777755442 1221 1 11 10 0 0 123332 2333 3
Q ss_pred eEEEEEEEcCCCcchhh-hHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHH
Q psy12564 882 QFYLVNVYAPAAKEDLS-MLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~e-rLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~e 960 (1033)
++.+++.|+-+...... +..+-..-++.+++.|.++ ++..||.+||+|..-.+. . +-|
T Consensus 205 Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~~EaIe~l-PnA~ViFGGD~NlrD~ev-~--------r~~----------- 263 (349)
T KOG2756|consen 205 KLCLMTSHLESTRGHAPERMNQFKMVLKKMQEAIESL-PNATVIFGGDTNLRDREV-T--------RCG----------- 263 (349)
T ss_pred eEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHhC-CCceEEEcCcccchhhhc-c--------cCC-----------
Confidence 68899999977665432 2111112256677777776 688999999999752211 1 111
Q ss_pred HHhcCCeehhcccC-CCCCccccCCCCCC---CCCCCccceeEEEEcccccc---cceeEEEeC-------CCCCCCccc
Q psy12564 961 FLDLGFLDVHRHLY-PNHRIYTYWPYYDR---PSKMKGWRLDYFLISKQLKS---HLSDLEIHG-------DVEGSDHAP 1026 (1033)
Q Consensus 961 LLsaGLvDA~R~~~-Pd~g~YTw~S~r~n---r~~n~GsRIDyILVS~nl~~---~V~sa~I~~-------~~~gSDH~P 1026 (1033)
+..+++|+|..+. |...+|||-...+. .......|+|+||..-.... ......... ...+|||++
T Consensus 264 -lPD~~vDvWE~lg~p~~~~FTwDT~~N~nl~G~~a~k~RfDRi~~r~~~~~G~~~~~~l~l~g~~kiRgc~~fPSDHwg 342 (349)
T KOG2756|consen 264 -LPDNIVDVWEFLGKPKHCQFTWDTQMNSNLGGTAACKLRFDRIFFRAAAEEGHIIPRSLDLLGLEKLRGCGRFPSDHWG 342 (349)
T ss_pred -CCchHHHHHHHhCCCCcCceeeecccCcccchhHHHHHHHHHHhhhhhhhcCCcCccccchhhhhhhccCCCCCcccce
Confidence 2347889998886 54578999765443 11223469999998322110 011222211 123799999
Q ss_pred eEEEEE
Q psy12564 1027 QILYLN 1032 (1033)
Q Consensus 1027 ViLdLd 1032 (1033)
+.++|.
T Consensus 343 ll~Tl~ 348 (349)
T KOG2756|consen 343 LLCTLD 348 (349)
T ss_pred eeeecc
Confidence 999985
No 24
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.16 E-value=9.5e-11 Score=128.59 Aligned_cols=218 Identities=18% Similarity=0.088 Sum_probs=120.2
Q ss_pred CCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCC-CCCCCCceEeecCCCCCce
Q psy12564 731 YPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPEGYHAFWFPGTRQGYA 809 (1033)
Q Consensus 731 ~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~-~el~GY~syfs~s~kkGys 809 (1033)
....++++++|++..+.. ..+++..+...++|+|.+||+..-..... .....|..+.......+-.
T Consensus 85 ~~~~~~~l~~N~r~~n~~-------------~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~~~~~~~ 151 (309)
T COG3021 85 DQRLLWNLQKNVRFDNAS-------------VAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQHPTGVF 151 (309)
T ss_pred cchhhhhhhhhccccCcC-------------HHHHHHHHhhhCcchhhhHHHHHHhHhHHHHHHHhCCceeecCCCCCee
Confidence 345678888887554333 35788888888999999999875322211 1123454333332333667
Q ss_pred EEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEe----ceEEE
Q psy12564 810 GVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY----EQFYL 885 (1033)
Q Consensus 810 GVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf----~~LtI 885 (1033)
|++++++.+.....+.-+ + + . ...++.+++.. ..+.+
T Consensus 152 ~~a~~sr~~~~~~~~~e~-----~------------~--~--------------------~pk~~~~t~~~~~~g~~l~v 192 (309)
T COG3021 152 TLAILSRRPCCPLTEAEP-----W------------L--R--------------------LPKSALATAYPLPDGTELTV 192 (309)
T ss_pred eeeeccccccccccccCc-----c------------c--c--------------------CCccceeEEEEcCCCCEEEE
Confidence 899999886321111100 0 0 0 02333333221 35778
Q ss_pred EEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcC
Q psy12564 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965 (1033)
Q Consensus 886 INVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaG 965 (1033)
+++|.-+.... ...++ +++..|.+.+.. -..|+|++||||++|-+ ....++...+
T Consensus 193 ~~lh~~~~~~~--~~~~~-~ql~~l~~~i~~--~~gpvIlaGDfNa~pWS--------------------~~~~R~~~l~ 247 (309)
T COG3021 193 VALHAVNFPVG--TDPQR-AQLLELGDQIAG--HSGPVILAGDFNAPPWS--------------------RTAKRMAALG 247 (309)
T ss_pred EeeccccccCC--ccHHH-HHHHHHHHHHHc--CCCCeEEeecCCCcchh--------------------HHHHHHHHhc
Confidence 88887643221 12234 455666666654 35899999999997521 1112222223
Q ss_pred CeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 966 FLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 966 LvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
..+.+.... ...+.+++... .+-.|.+|||||++. +. +.+...... .+|||.||+++|++
T Consensus 248 ~~~~~~~aG--~~~~~~~p~~~--~r~~g~PIDhvf~rg-l~--~~ka~rl~~-~gSDH~PLLveF~~ 307 (309)
T COG3021 248 GLRAAPRAG--LWEVRFTPDER--RRAFGLPIDHVFYRG-LT--VMKARRLPD-RGSDHRPLLVEFSY 307 (309)
T ss_pred ccccchhcc--CCccccCHHHH--hhccCCCcceeeecC-cc--hhhhhhccc-cCCCCCceEEEEEe
Confidence 334433322 11222222111 113577899999987 32 455555544 58999999999874
No 25
>KOG2338|consensus
Probab=99.12 E-value=6.9e-10 Score=127.24 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=100.1
Q ss_pred CeEEEEEecccCccc----c--cccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCCCCCCC----CCCCCceEee
Q psy12564 733 WNFKIGSWNVNGIRA----W--SQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPLEKLPE----CPEGYHAFWF 801 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra----~--~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~see~L~~----el~GY~syfs 801 (1033)
-.++||||||..-.. . .-..+....-|.. ...|+..|.-.+|||+||||+......... ...||..++.
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~ 194 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFK 194 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEE
Confidence 489999999943111 0 0011112344554 457899999999999999999764321111 1578987776
Q ss_pred cCCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEe-
Q psy12564 802 PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY- 880 (1033)
Q Consensus 802 ~s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf- 880 (1033)
........|||++++...++....... ..+ | ....+. ..+ --|-++.+++
T Consensus 195 r~t~~KthG~ai~w~~~~F~lv~~~~l---------------~y~--~-----~~~~l~---n~~----NV~lvv~l~f~ 245 (495)
T KOG2338|consen 195 RRTGTKTHGVAILWHSAKFKLVNHSEL---------------NYF--D-----SGSALA---NRD----NVGLVVSLEFR 245 (495)
T ss_pred eccCCCCceEEEEEecccceecccchh---------------hcc--c-----ccchhh---ccc----ceeEEEEEEec
Confidence 655556689999999986665432210 000 1 000010 000 2334455555
Q ss_pred ------ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh----cCCCCEEEeccCCCcCCc
Q psy12564 881 ------EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL----NEIKPVVLAGDLNVAHNH 935 (1033)
Q Consensus 881 ------~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL----~ag~PVII~GDFNaap~e 935 (1033)
..+.|+|+|+=..... -..|.++...|.+.++++ ....|+++|||||..+.+
T Consensus 246 ~~~~~sq~ilVanTHLl~np~~---~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 246 LVDESSQGILVANTHLLFNPSR---SDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred ccCcccCceEEEeeeeeecCcc---cchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 2688999887333211 123556666666666654 225599999999998764
No 26
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.11 E-value=1.3e-09 Score=118.59 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=52.1
Q ss_pred CeEEEEEecccCcccccccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCCC-CCCC-------C-CCCCceEeec
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPLE-KLPE-------C-PEGYHAFWFP 802 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~see-~L~~-------e-l~GY~syfs~ 802 (1033)
..|+|+||||+...... ..|.. .+.+.++|+ ++|||++||+..... .+.. . ..+|.++.++
T Consensus 16 ~~l~I~SfNIr~fgd~k-------~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~ 86 (276)
T smart00476 16 ASLRICAFNIQSFGDSK-------MSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSE 86 (276)
T ss_pred CcEEEEEEECcccCCcc-------ccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecC
Confidence 57999999998554322 12332 466777777 889999999975422 1111 1 2378776665
Q ss_pred CC--CCCceEEEEEEcCCcceEe
Q psy12564 803 GT--RQGYAGVAVLSKTKPVRVT 823 (1033)
Q Consensus 803 s~--kkGysGVAILSR~PIlkVe 823 (1033)
+. ..+....|+++|....++.
T Consensus 87 r~gr~~~~E~~a~~Yr~drv~v~ 109 (276)
T smart00476 87 PLGRNSYKEQYLFLYRSDLVSVL 109 (276)
T ss_pred CCCCCCCCEEEEEEEecceEEEc
Confidence 32 2223568999999866543
No 27
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=99.08 E-value=4.1e-12 Score=133.95 Aligned_cols=114 Identities=8% Similarity=-0.018 Sum_probs=92.2
Q ss_pred cccccccCCHHHHHHHhhcCcchheeccccceeecccccccc---------CCchhhhhhcccccccCCCCcccchhccc
Q psy12564 574 PAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQN---------TKGKFELLKEIKFERTGSEDTSEDVEESG 644 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~ev---------~~g~eeLlklpGVGrk~~~~TAn~V~~~~ 644 (1033)
-++++..+++++|+++| .++||++.||++++.+.....+. +...++|+++||||++ ||++|+..+
T Consensus 68 t~e~L~~a~~eeL~~~I--rp~Gf~~~KA~~Lk~la~~i~~~~g~~~~~~~~~~re~Ll~l~GIG~k----TAd~iLlya 141 (218)
T PRK13913 68 NLKKIAYIEFSKLAECV--RPSGFYNQKAKRLIDLSENILKDFGSFENFKQEVTREWLLDQKGIGKE----SADAILCYV 141 (218)
T ss_pred CHHHHHcCCHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHcCCchhccCchHHHHHHcCCCccHH----HHHHHHHHH
Confidence 46889999999999999 99999999999988776655443 4445789999999996 999999999
Q ss_pred CCCC---CCCCccccccccccCC---hHHHHhhhcC-------------------cccccccccccccCccccc
Q psy12564 645 FFTV---EPIPDSNLYNEWEYRP---PKRKKASRKN-------------------VFSFKLNEIHVGTGKIENR 693 (1033)
Q Consensus 645 f~~~---~p~HVhRIsNRwG~vP---~ktEkAL~k~-------------------~~w~~in~lLV~~Gq~iCR 693 (1033)
|..+ +|.|++||++|||+.+ ++...-+++. +....+|.++|.||+..|.
T Consensus 142 ~~rp~fvVDty~~Rv~~RlG~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Halive~~k~~~~ 215 (218)
T PRK13913 142 CAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLE 215 (218)
T ss_pred cCCCccccchhHHHHHHHcCCCCCCHHHHHHHHHHhhhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 8876 7789999999999993 3333334331 2466789999999998883
No 28
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=99.04 E-value=1.6e-11 Score=128.81 Aligned_cols=92 Identities=4% Similarity=-0.016 Sum_probs=77.6
Q ss_pred cccccCCHHHHHHHhhcCcch--heeccccceeecccc----------ccccCCchhhhh-hcccccccCCCCcccchh-
Q psy12564 576 HKMSLAPERKIAQFNNRNKLV--LLHTKTTHVKTVPSE----------NVQNTKGKFELL-KEIKFERTGSEDTSEDVE- 641 (1033)
Q Consensus 576 ~~~~~~~e~~i~~~~~r~ka~--~~~~ka~~~~~v~~~----------~~ev~~g~eeLl-klpGVGrk~~~~TAn~V~- 641 (1033)
+.| .+++++|+++| .+++ |++.||++++.+.+. .+++|...++|+ ++||||+| |||+|+
T Consensus 65 ~~l-~~~~eeL~~~I--r~~Gygf~~~KAk~I~~~~~~~~~l~~~~~~~~~~~~~R~~Ll~~lpGIG~K----TAd~vL~ 137 (208)
T PRK01229 65 GFL-YLSEEELEEKL--KEVGHRFYNKRAEYIVEARKLYGKLKEIIKADKDQFEAREFLVKNIKGIGYK----EASHFLR 137 (208)
T ss_pred HHc-CCCHHHHHHHH--HHhhcccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHcCCCCcHH----HHHHHHH
Confidence 345 78999999999 8885 999999988766643 567888889999 99999996 999999
Q ss_pred cccCCCC--CCCCccccccccccC-----------ChHHHHhhhcC
Q psy12564 642 ESGFFTV--EPIPDSNLYNEWEYR-----------PPKRKKASRKN 674 (1033)
Q Consensus 642 ~~~f~~~--~p~HVhRIsNRwG~v-----------P~ktEkAL~k~ 674 (1033)
+.+|.+. +|.||+|+++|||++ |.++|++|++.
T Consensus 138 ~~~~~~~~iVDtHv~Ri~~RlG~~~~~~~~lt~~~y~~~E~~l~~~ 183 (208)
T PRK01229 138 NVGYEDLAILDRHILRFLKRYGLIEEIPKTLSKKRYLEIEEILREI 183 (208)
T ss_pred HccCCCeeeeeHHHHHHHHHhCCCcccccccCcCCHHHHHHHHHHH
Confidence 7876332 777999999999996 67899999885
No 29
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.61 E-value=8.7e-07 Score=97.79 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=38.7
Q ss_pred CCCcEEEEEec--eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHh-------hcCCCCEEEeccCCCcCC
Q psy12564 871 DDGRVMTVEYE--QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKS-------LNEIKPVVLAGDLNVAHN 934 (1033)
Q Consensus 871 seGRiItVEf~--~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~q-------L~ag~PVII~GDFNaap~ 934 (1033)
..|..+.+++. .+.++++|++++... ...|...+..+...+.- +...+.+|++||||...+
T Consensus 126 KG~v~i~~~~~~~~~~fv~~HL~a~~~~---~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 126 KGAVAVRFKLSDTSFCFVNSHLAAGASN---VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred CceEEEEEEEcCcEEEEEeeccccccch---hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 45666667765 499999999997653 23344444444333210 013578999999998654
No 30
>KOG0620|consensus
Probab=98.53 E-value=2e-07 Score=105.20 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=62.5
Q ss_pred eEEEEEecccCccccc----ccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCCCCC-CC-CCCCCceEeecCC--
Q psy12564 734 NFKIGSWNVNGIRAWS----QVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPLEKL-PE-CPEGYHAFWFPGT-- 804 (1033)
Q Consensus 734 sLRIvSWNVnGLra~~----k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~see~L-~~-el~GY~syfs~s~-- 804 (1033)
.++|+|||+....... .+++.|+..|.. +..+.+.|...+||++||||+.....-+ +. ...||...|.+..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~~p~l~~~gY~g~~~~k~~~ 98 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFFSPELEASGYSGIFIEKTRM 98 (361)
T ss_pred eEEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHccchhhhcCCcceeeccccc
Confidence 8999999996544321 246667777776 4578888889999999999983222112 11 2459988887732
Q ss_pred ----CCCceEEEEEEcCCcceE
Q psy12564 805 ----RQGYAGVAVLSKTKPVRV 822 (1033)
Q Consensus 805 ----kkGysGVAILSR~PIlkV 822 (1033)
.+...|+|||.|......
T Consensus 99 ~~~~~~~~dGcaiffk~s~f~l 120 (361)
T KOG0620|consen 99 GEVELEKIDGCAIFFKPSLFQL 120 (361)
T ss_pred chhhcccCceeeeeecchHHhh
Confidence 455789999999886543
No 31
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=98.43 E-value=1e-06 Score=98.65 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=57.2
Q ss_pred eEEEEEecccCccc----ccccccchhhhhhhH-HHHHHHHHhcCCcEEEEeccccCCCC-C-CC--CCCCCceEeecCC
Q psy12564 734 NFKIGSWNVNGIRA----WSQVNKLFTSIFLQQ-KDGFSFMRQHDLNVFCIQEIRCPLEK-L-PE--CPEGYHAFWFPGT 804 (1033)
Q Consensus 734 sLRIvSWNVnGLra----~~k~~~S~~~~w~kr-d~Iid~Lre~dPDVIcLQETk~see~-L-~~--el~GY~syfs~s~ 804 (1033)
.++|||||+..-.. ..++. +|+.-|..+ +.+.+.|..++|||+||||+....-. + .. ...||...+.+.+
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~ 108 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKE 108 (378)
T ss_pred eeEEEehhhhhhhhccccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCC
Confidence 69999999954322 22333 477788874 57888899999999999999865311 1 11 2578987776632
Q ss_pred C--------C--CceEEEEEEcC
Q psy12564 805 R--------Q--GYAGVAVLSKT 817 (1033)
Q Consensus 805 k--------k--GysGVAILSR~ 817 (1033)
. . ...|+||+.+.
T Consensus 109 ~k~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 109 RKVKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred CcccccccccccccceEEEEEEe
Confidence 2 1 34699999988
No 32
>smart00478 ENDO3c endonuclease III. includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=98.33 E-value=3.3e-08 Score=96.72 Aligned_cols=110 Identities=17% Similarity=0.074 Sum_probs=83.6
Q ss_pred cccccccCCHHHHHHHhh-----cCcchheeccccceeeccccccccCCchhhhhhcccccccCCCCcccchhcccCCCC
Q psy12564 574 PAHKMSLAPERKIAQFNN-----RNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTV 648 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~-----r~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~ 648 (1033)
.+++|..+++++|.++|. ++||+.|+..+ ..++..+++.+|...++|+++||||++ ||+.++-.+|..+
T Consensus 23 ~~~~l~~~~~~eL~~~l~~~g~~~~ka~~i~~~a--~~~~~~~~~~~~~~~~~L~~l~GIG~~----tA~~~l~~~~~~~ 96 (149)
T smart00478 23 TPEDLAAADEEELEELIRPLGFYRRKAKYLIELA--RILVEEYGGEVPDDREELLKLPGVGRK----TANAVLSFALGKP 96 (149)
T ss_pred CHHHHHCCCHHHHHHHHHHcCChHHHHHHHHHHH--HHHHHHHCCCccHHHHHHHcCCCCcHH----HHHHHHHHHCCCC
Confidence 478899999999988882 23555555555 445556677788888999999999996 9999998886654
Q ss_pred ---CCCCccccccccccC-----ChHHHHhhhcC-c--ccccccccccccCc
Q psy12564 649 ---EPIPDSNLYNEWEYR-----PPKRKKASRKN-V--FSFKLNEIHVGTGK 689 (1033)
Q Consensus 649 ---~p~HVhRIsNRwG~v-----P~ktEkAL~k~-~--~w~~in~lLV~~Gq 689 (1033)
+|.||.|+..|+|++ +.+.++.++.. | .|..++.+++-||+
T Consensus 97 ~~~~D~~v~r~~~rl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~g~ 148 (149)
T smart00478 97 FIPVDTHVLRIAKRLGLVDKKSTPEEVEKLLEKLLPKEDWRELNLLLIDFGR 148 (149)
T ss_pred CCccchHHHHHHHHhCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHcC
Confidence 666999999999987 34555555554 3 47888888888875
No 33
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.7e-07 Score=104.73 Aligned_cols=138 Identities=14% Similarity=0.032 Sum_probs=103.2
Q ss_pred CcccccccCCHHHHHHHhhcCcch------heeccccceeeccccccccCCchhhhhhcccccccCCCCcccchhcccCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLV------LLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFF 646 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~------~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~ 646 (1033)
|--++|.+++++++-++. ...| +++..| ..++..+.|++|+..++|.+|||||+- ||.-|+..+|.
T Consensus 64 Pti~~LA~A~~~evl~~W--~gLGYysRArnL~~~A--~~v~~~~~G~~P~~~~~l~~LpGiG~y----Ta~Ail~~a~~ 135 (342)
T COG1194 64 PTIKALAAAPEDEVLKAW--EGLGYYSRARNLHKAA--QEVVERHGGEFPDDEEELAALPGVGPY----TAGAILSFAFN 135 (342)
T ss_pred CCHHHHhcCCHHHHHHHH--HhcChHHHHHHHHHHH--HHHHHHcCCCCCCCHHHHHhCCCCcHH----HHHHHHHHHhC
Confidence 446789999999999887 4444 555555 678889999999999999999999996 99999999988
Q ss_pred CCCCC---CccccccccccC-----ChHHHHhhhcC------cc--cccccccccccCcccc---cCCCCCCCCcchhhh
Q psy12564 647 TVEPI---PDSNLYNEWEYR-----PPKRKKASRKN------VF--SFKLNEIHVGTGKIEN---RLGCDSSNETSYAEV 707 (1033)
Q Consensus 647 ~~~p~---HVhRIsNRwG~v-----P~ktEkAL~k~------~~--w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aec 707 (1033)
.+.|+ -|-||.-|.=-+ ...+++.+... +. -..+|--++.+|--+| +|.|..||+. ..|
T Consensus 136 ~~~~~lDgNV~RVl~R~f~i~~~~~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~--~~c 213 (342)
T COG1194 136 QPEPVLDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLR--DNC 213 (342)
T ss_pred CCCceeecchheeehhhhcccccccccchhHHHHHHHHHhcCCCCChHHHHHHHHHhhhHhhcCCCCCCCcCcch--HHH
Confidence 88666 777777663111 12345555444 22 3568888899999999 7999999999 778
Q ss_pred ccCccccCCCchh
Q psy12564 708 EEVPIIDFNDPFR 720 (1033)
Q Consensus 708 EEVpIIdf~~p~~ 720 (1033)
..+--=+....|.
T Consensus 214 ~a~~~g~~~~~P~ 226 (342)
T COG1194 214 AAYRNGTPEKYPV 226 (342)
T ss_pred HHHHcCCcccCCC
Confidence 7664444443333
No 34
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=98.21 E-value=4.7e-08 Score=102.48 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=96.5
Q ss_pred ccccccCCHHHHHHHhhcCcchheeccccceeeccccccccCC---------chhhhhhcccccccCCCCcccchhcccC
Q psy12564 575 AHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTK---------GKFELLKEIKFERTGSEDTSEDVEESGF 645 (1033)
Q Consensus 575 ~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~ev~~---------g~eeLlklpGVGrk~~~~TAn~V~~~~f 645 (1033)
.+++..+++++++++| .+||||..||+-+|.+......... ..++||++.|||-- ||.-++--+|
T Consensus 63 l~~I~~~~~~~L~elI--rpsGFYnqKa~rLk~l~k~l~~~~~~~~~~~~~~~R~~LL~iKGIG~E----TaDsILlYa~ 136 (215)
T COG2231 63 LKKILKLDEEELAELI--RPSGFYNQKAKRLKALSKNLAKFFINLESFKSEVLREELLSIKGIGKE----TADSILLYAL 136 (215)
T ss_pred HHHHhcCCHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHccCCcchh----hHHHHHHHHh
Confidence 5678889999999999 9999999999777444333332222 24889999999995 9999999996
Q ss_pred CCC---CCCCccccccccccCChH----HHHh----hhcC-cccccccccccccCcccc--cCCCCCCCCcchhhhcc
Q psy12564 646 FTV---EPIPDSNLYNEWEYRPPK----RKKA----SRKN-VFSFKLNEIHVGTGKIEN--RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 646 ~~~---~p~HVhRIsNRwG~vP~k----tEkA----L~k~-~~w~~in~lLV~~Gq~iC--RPkCs~Cp~~S~aecEE 709 (1033)
-.+ +|---.|+..|.|+.-++ ..+- |.++ ..-..+|.++|.||+..| .|.|+.||+. ..|..
T Consensus 137 ~rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~l~~~~~lyqe~HAlIv~~~K~f~~k~~~~~~cpL~--~~~~~ 212 (215)
T COG2231 137 DRPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEENLPENLRLYQEFHALIVEHAKHFCKKKPLCEKCPLK--EKCKK 212 (215)
T ss_pred cCcccchhHHHHHHHHHhcccccccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHccCCcCCCCchHH--HHHhh
Confidence 555 344667899999988332 2222 3333 446678999999999999 9999999998 66654
No 35
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=98.18 E-value=1.4e-07 Score=92.96 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=84.8
Q ss_pred CcccccccCCHHHHHHHhhc----Ccchheeccccceeecccccccc---CCchhhhhhcccccccCCCCcccchhcccC
Q psy12564 573 LPAHKMSLAPERKIAQFNNR----NKLVLLHTKTTHVKTVPSENVQN---TKGKFELLKEIKFERTGSEDTSEDVEESGF 645 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r----~ka~~~~~ka~~~~~v~~~~~ev---~~g~eeLlklpGVGrk~~~~TAn~V~~~~f 645 (1033)
+.++.+..+++++|++++.. +||+.+...+ ..+...+.... +...++|+++||||.+ ||+.++-.+|
T Consensus 31 pt~~~l~~~~~~~l~~~~~~~G~~~kA~~i~~~a--~~~~~~~~~~~~~~~~~~~~L~~l~GIG~~----tA~~~l~~~~ 104 (158)
T cd00056 31 PTPEALAAADEEELRELIRSLGYRRKAKYLKELA--RAIVEGFGGLVLDDPDAREELLALPGVGRK----TANVVLLFAL 104 (158)
T ss_pred CCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHcCCccCCCcccHHHHHcCCCCCHH----HHHHHHHHHC
Confidence 56789999999999999974 8899888888 66666676665 6667899999999996 9999999887
Q ss_pred CCC---CCCCccccccccccC-----ChHHHHhhhcC---cccccccccccccC
Q psy12564 646 FTV---EPIPDSNLYNEWEYR-----PPKRKKASRKN---VFSFKLNEIHVGTG 688 (1033)
Q Consensus 646 ~~~---~p~HVhRIsNRwG~v-----P~ktEkAL~k~---~~w~~in~lLV~~G 688 (1033)
... +|.||.|+.+++|+. +.+....++.. +++..+|..|+.+|
T Consensus 105 ~~~~~pvD~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 158 (158)
T cd00056 105 GPDAFPVDTHVRRVLKRLGLIPKKKTPEELEELLEELLPKPYWGEANQALMDLG 158 (158)
T ss_pred CCCCCccchhHHHHHHHhCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHcC
Confidence 633 577999999999995 23444443333 45566777766654
No 36
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.11 E-value=5.4e-05 Score=91.25 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=77.1
Q ss_pred eEEEEEEEcCCCcch-----------hhhHHHHHHHHHHHHHHHHhh---cCCCCEEEeccCCCcCCccccccccccCCC
Q psy12564 882 QFYLVNVYAPAAKED-----------LSMLSVKLLWNSFLRGHLKSL---NEIKPVVLAGDLNVAHNHIDVALPLTNLGK 947 (1033)
Q Consensus 882 ~LtIINVYlPng~sd-----------~erLd~R~kFld~L~e~L~qL---~ag~PVII~GDFNaap~eiD~adpk~n~g~ 947 (1033)
.|+++.-|+.+.+.. ..-...|.+...+|.+|+... ..+.+++|+||||....+
T Consensus 622 kfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e------------ 689 (798)
T COG2374 622 KFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE------------ 689 (798)
T ss_pred EEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc------------
Confidence 466666676553321 011234667788899999864 347899999999985321
Q ss_pred CCCChHHHHHHHHHHhcCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeC----------
Q psy12564 948 SGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHG---------- 1017 (1033)
Q Consensus 948 sGft~eERa~L~eLLsaGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~---------- 1017 (1033)
..++.+...|+...-..+++.+.+|+|. +.+. --.|||+|+|..+...+..+..+.
T Consensus 690 --------dpI~~l~~aGy~~l~~~~~~~~~~YSY~-f~G~-----~gtLDhaLas~sl~~~v~~a~ewHINAdE~~~ld 755 (798)
T COG2374 690 --------DPIQALEGAGYMNLAARFHDAGDRYSYV-FNGQ-----SGTLDHALASASLAAQVSGATEWHINADEPDALD 755 (798)
T ss_pred --------cHHHHHhhcCchhhhhhccCCCCceEEE-ECCc-----cchHhhhhhhhhhhhhccCceeeeecccccchhh
Confidence 1233444456554444444444556653 1111 127999999988876665544331
Q ss_pred -----------------CCCCCCccceEEEEEC
Q psy12564 1018 -----------------DVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 1018 -----------------~~~gSDH~PViLdLdL 1033 (1033)
..+.|||=||++.|+|
T Consensus 756 Yn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL 788 (798)
T COG2374 756 YNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNL 788 (798)
T ss_pred hhhhhccccccccccCCccccCCCCCeEEEEEe
Confidence 1246999999999986
No 37
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=98.05 E-value=4.7e-07 Score=93.50 Aligned_cols=66 Identities=8% Similarity=0.023 Sum_probs=52.6
Q ss_pred cccccccCCHHHHHHHhhcCcc--hheeccccceeec-----ccccccc--------CCc---hhhhhhcccccccCCCC
Q psy12564 574 PAHKMSLAPERKIAQFNNRNKL--VLLHTKTTHVKTV-----PSENVQN--------TKG---KFELLKEIKFERTGSED 635 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~r~ka--~~~~~ka~~~~~v-----~~~~~ev--------~~g---~eeLlklpGVGrk~~~~ 635 (1033)
-+++|..+++++|+++|+..++ +|+..||++++.+ ..|.+.+ |++ .++|++|||||+|
T Consensus 51 tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~iie~y~G~v~~L~~~~~p~t~~lre~Ll~LpGVG~K---- 126 (177)
T TIGR03252 51 DAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYVVDTYDGDATAVWTEGDPDGKELLRRLKALPGFGKQ---- 126 (177)
T ss_pred CHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHhCCChhhhhcccCCCcHHHHHHHHcCCCCCHH----
Confidence 3688999999999999965556 7777887777654 4555654 666 3789999999996
Q ss_pred cccchhcc
Q psy12564 636 TSEDVEES 643 (1033)
Q Consensus 636 TAn~V~~~ 643 (1033)
|||+|++.
T Consensus 127 TAnvVL~~ 134 (177)
T TIGR03252 127 KAKIFLAL 134 (177)
T ss_pred HHHHHHHH
Confidence 99999983
No 38
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg). All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
Probab=96.78 E-value=9.6e-05 Score=82.10 Aligned_cols=85 Identities=6% Similarity=-0.004 Sum_probs=58.8
Q ss_pred CcccccccCC-HHHHHHHhhcCcchheeccccceeeccccccc----------cCCchhhhhhcccccccCCCCcccchh
Q psy12564 573 LPAHKMSLAP-ERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQ----------NTKGKFELLKEIKFERTGSEDTSEDVE 641 (1033)
Q Consensus 573 ~~~~~~~~~~-e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~e----------v~~g~eeLlklpGVGrk~~~~TAn~V~ 641 (1033)
|.++.+...+ |+.|..+--.++|+.|+..| ..++..+.+. .+...++|+++||||+| ||+.|+
T Consensus 164 Ptp~~La~~~~e~~Lr~~G~g~Ra~~I~~~A--~~i~~~~~~~~~l~~l~~~~~~~~~~~L~~l~GIG~~----tAd~vl 237 (310)
T TIGR00588 164 PSLHALTGPEAEAHLRKLGLGYRARYIRETA--RALLEEQGGRAWLQQIRGASYEDAREALCELPGVGPK----VADCIC 237 (310)
T ss_pred CCHHHHhCCChHHHHHHcCCHHHHHHHHHHH--HHHHhccCCchhHHhhccCChHHHHHHHHhCCCccHH----HHHHHH
Confidence 3456665543 45565443346788888888 4555544322 33456889999999996 999999
Q ss_pred cccCCCC----CCCCcccccccc-ccC
Q psy12564 642 ESGFFTV----EPIPDSNLYNEW-EYR 663 (1033)
Q Consensus 642 ~~~f~~~----~p~HVhRIsNRw-G~v 663 (1033)
--+|..+ +|.||+|+.+|| |+.
T Consensus 238 l~~l~~~d~~PvD~~v~r~~~r~y~~~ 264 (310)
T TIGR00588 238 LMGLDKPQAVPVDVHVWRIANRDYPWH 264 (310)
T ss_pred HHhCCCCCceeecHHHHHHHHHHhccc
Confidence 8887654 577999999998 543
No 39
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=96.71 E-value=0.00026 Score=54.14 Aligned_cols=28 Identities=14% Similarity=-0.033 Sum_probs=23.8
Q ss_pred cccccCCchhhhhhcccccccCCCCcccchhc
Q psy12564 611 ENVQNTKGKFELLKEIKFERTGSEDTSEDVEE 642 (1033)
Q Consensus 611 ~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~ 642 (1033)
+.+.+|.+.|||.++||||++ ||+.|++
T Consensus 2 ~~g~~pas~eeL~~lpGIG~~----tA~~I~~ 29 (30)
T PF00633_consen 2 LDGLIPASIEELMKLPGIGPK----TANAILS 29 (30)
T ss_dssp HHHHHTSSHHHHHTSTT-SHH----HHHHHHH
T ss_pred CCCcCCCCHHHHHhCCCcCHH----HHHHHHh
Confidence 567789999999999999996 9998874
No 40
>KOG0566|consensus
Probab=96.49 E-value=0.059 Score=67.32 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=29.2
Q ss_pred eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHH-----hhcCCCCEEEeccCCCc
Q psy12564 882 QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK-----SLNEIKPVVLAGDLNVA 932 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~-----qL~ag~PVII~GDFNaa 932 (1033)
.+.+++-|+-.+...-+ +.+..+ ..+..-|. .+..++.+++|||||-.
T Consensus 674 sfCFv~SHlAAG~snv~--ERn~DY-~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 674 SFCFVCSHLAAGQSNVE--ERNEDY-KTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred cEEEEecccccccchHh--hhhhhH-HHHHHhccccCCccccCCceEEEeccccee
Confidence 69999999988875321 112222 22222221 12457889999999975
No 41
>KOG2457|consensus
Probab=96.44 E-value=0.00081 Score=76.45 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=78.9
Q ss_pred chheeccccceeeccccccccCCchhhhhh-cccccccCCCCcccchhcccCCCC---CCCCccccccccccC----ChH
Q psy12564 595 LVLLHTKTTHVKTVPSENVQNTKGKFELLK-EIKFERTGSEDTSEDVEESGFFTV---EPIPDSNLYNEWEYR----PPK 666 (1033)
Q Consensus 595 a~~~~~ka~~~~~v~~~~~ev~~g~eeLlk-lpGVGrk~~~~TAn~V~~~~f~~~---~p~HVhRIsNRwG~v----P~k 666 (1033)
+.++++-| .+++....++.|++.++|.| +||||+- ||--|.+.+|..+ ++=.|-|+.-|- +. |-+
T Consensus 182 ~rrL~ega--~~vv~~~~ge~Prta~~l~kgvpGVG~Y----TAGAiaSIAf~q~tGiVDGNVirvlsRa-lAIhsDcSk 254 (555)
T KOG2457|consen 182 ARRLLEGA--KMVVAGTEGEFPRTASSLMKGVPGVGQY----TAGAIASIAFNQVTGIVDGNVIRVLSRA-LAIHSDCSK 254 (555)
T ss_pred HHHHHHHH--HHHHHhCCCCCCChHHHHHhhCCCCCcc----chhhhhhhhhcCcccccccchHHHhHHh-HhhcCCcch
Confidence 44556667 78999999999999999999 9999996 9999999998777 444666665330 00 111
Q ss_pred H--HHh-------hhcCcccccccccccccCcccc---cCCCCCCCCcchhhhccCc
Q psy12564 667 R--KKA-------SRKNVFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEVP 711 (1033)
Q Consensus 667 t--EkA-------L~k~~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEVp 711 (1033)
+ ... |.+-.-=+.||--++..|-..| +|.|+.||+. ..|..+.
T Consensus 255 gk~~q~~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvs--s~CrA~q 309 (555)
T KOG2457|consen 255 GKFFQSSWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVS--SQCRAFQ 309 (555)
T ss_pred hhHHHHHHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcH--HHHHHHh
Confidence 1 111 2221233568889999999999 9999999999 7776553
No 42
>KOG1294|consensus
Probab=93.03 E-value=0.29 Score=55.88 Aligned_cols=146 Identities=23% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCCcEEEEEeceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCC
Q psy12564 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949 (1033)
Q Consensus 871 seGRiItVEf~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sG 949 (1033)
.+||.+....+.+.+++||.|....+.. ..+..|+..|....+.+ ..+.++++ |..+. |..........+|
T Consensus 11 ~~~~~~~~~k~~~~~~~v~~~~~~~e~~--~~~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~--~i~~~~~~~~~~~ 82 (335)
T KOG1294|consen 11 SEGRCVIVDKEMFVLINVYCPRNSPEIS--KRRLRFAKVLHYRVEKLLKQGNRKVL----NICPW--DIAGLEACEKFSG 82 (335)
T ss_pred ccCCeeeeecccccccceeccccCCcch--hhhhhhhhHHHHHHHHHHHhCCeeEe----ecCch--hhhhhhhhhcccc
Confidence 6888888888889999999999876532 22677888887777765 56777777 65442 3322111112222
Q ss_pred CChHHHHHH---HHHHhcCC-eehhcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCc
Q psy12564 950 FTIQERNYF---SNFLDLGF-LDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024 (1033)
Q Consensus 950 ft~eERa~L---~eLLsaGL-vDA~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH 1024 (1033)
+. .....+ ..+...++ +|..+..++..+.||.|--.-. ...+.+.++||+.+.+-.. ..-.+.++|||
T Consensus 83 ~~-~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v------~~~~~~~~s~h 155 (335)
T KOG1294|consen 83 DP-EISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCASKKDGYSGEIDYSKFKPLKV------HYGFGAMGSDH 155 (335)
T ss_pred ch-hccccchhhhhhhhccceeccCcceecccCCcccceeecccccCCccceeeeeeccccee------eecccccCCcc
Confidence 21 111122 12222333 6776777776677765432222 2345667888887765321 11111248999
Q ss_pred cceEEEE
Q psy12564 1025 APQILYL 1031 (1033)
Q Consensus 1025 ~PViLdL 1031 (1033)
+|+-..|
T Consensus 156 ~~~g~~i 162 (335)
T KOG1294|consen 156 RPVGRVI 162 (335)
T ss_pred CccceEE
Confidence 9987654
No 43
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=92.47 E-value=0.8 Score=55.89 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=32.9
Q ss_pred CCcEEEEEe--ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHH-----------hhcCCCCEEEeccCCCcCC
Q psy12564 872 DGRVMTVEY--EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK-----------SLNEIKPVVLAGDLNVAHN 934 (1033)
Q Consensus 872 eGRiItVEf--~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~-----------qL~ag~PVII~GDFNaap~ 934 (1033)
.|-.+.+.+ ..+.|+|+|++++.... ....|..-+..+...+. .+.....+|++||||....
T Consensus 409 GAVaIr~~l~~Ts~cFVn~HLAAg~~~~-~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 409 GSVSISMSLFQSRLCFVCSHLTSGHKDG-AEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred eeEEEEEEEcCcEEEEEEeccccccccc-hHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 333444444 36999999999875421 11222221122211110 0123568999999998654
No 44
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=90.94 E-value=0.41 Score=56.20 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=25.4
Q ss_pred CccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 993 KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 993 ~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
..|. |+||+.+... .....+-++..+.|||.||.+.+++
T Consensus 288 PsWt-DRIl~~s~~~-~p~sY~sip~l~~SDHrPV~a~~~~ 326 (460)
T COG5411 288 PSWT-DRILYKSEQL-TPHSYSSIPHLMISDHRPVYATFRA 326 (460)
T ss_pred Cchh-hhhhhhcccc-ccccccccCceeecCCCeEEEEEec
Confidence 4566 9999987532 1222333333567999999998864
No 45
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=90.73 E-value=0.026 Score=52.62 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=52.2
Q ss_pred CCcccccccCCHHHHHHHhhcCcchheeccccceeeccccccccCCchhhhhhcccccccCCCCcccchhcccCCCCCCC
Q psy12564 572 VLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPI 651 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~~p~ 651 (1033)
.+-+++|..+++++|.++| .+.++...||+.++.+...-. |+. . .+.++|.
T Consensus 27 ~pt~~~l~~~~~~el~~~i--~~~G~~~~ka~~i~~~a~~~~---------------~~~-----------d-~~~~~D~ 77 (108)
T PF00730_consen 27 FPTPEALAEASEEELRELI--RPLGFSRRKAKYIIELARAIL---------------GRP-----------D-PFPPVDT 77 (108)
T ss_dssp CSSHHHHHCSHHHHHHHHH--TTSTSHHHHHHHHHHHHHHHH---------------C-S-----------S-SS-TTSH
T ss_pred CCCHHHHHhCCHHHHHHHh--hccCCCHHHHHHHHHHHHHhh---------------hcc-----------c-ceecCcH
Confidence 5668899999999999998 778888788866655544433 442 1 2567899
Q ss_pred CccccccccccC-----ChHHHHhhhc
Q psy12564 652 PDSNLYNEWEYR-----PPKRKKASRK 673 (1033)
Q Consensus 652 HVhRIsNRwG~v-----P~ktEkAL~k 673 (1033)
|++|+++|+|.. ++++++.+++
T Consensus 78 ~v~r~~~r~~~~~~~~~~~~~~~~~~e 104 (108)
T PF00730_consen 78 HVRRVLQRLGGIPEKKTKEETEKKLEE 104 (108)
T ss_dssp HHHHHHHHHTSSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 999999999998 3455555544
No 46
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=86.59 E-value=0.18 Score=56.02 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=52.5
Q ss_pred CCcccccccCCHHHHHHH-hhcCcchheeccccceeecc-ccccccCC----chhhhhhcccccccCCCCcccchhcccC
Q psy12564 572 VLPAHKMSLAPERKIAQF-NNRNKLVLLHTKTTHVKTVP-SENVQNTK----GKFELLKEIKFERTGSEDTSEDVEESGF 645 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~-~~r~ka~~~~~ka~~~~~v~-~~~~ev~~----g~eeLlklpGVGrk~~~~TAn~V~~~~f 645 (1033)
.|.++.+..+++++|..+ +-+.|++.++..| ..+.+ ....+... ..++|++|||||++ ||+.|+--+|
T Consensus 155 FPtpe~La~~~~~eL~~~Gl~~~Ra~~L~~lA--~~i~~g~l~l~~~~~~~~~~~~L~~LpGIGpw----TA~~vllr~l 228 (283)
T PRK10308 155 FPTPERLAAADPQALKALGMPLKRAEALIHLA--NAALEGTLPLTIPGDVEQAMKTLQTFPGIGRW----TANYFALRGW 228 (283)
T ss_pred CCCHHHHHcCCHHHHHHCCCCHHHHHHHHHHH--HHHHcCCCCccccCCHHHHHHHHhcCCCcCHH----HHHHHHHHhC
Confidence 456888888999988753 2245788888877 33333 12222222 24789999999996 9999988876
Q ss_pred CCC-----CCCCcccc
Q psy12564 646 FTV-----EPIPDSNL 656 (1033)
Q Consensus 646 ~~~-----~p~HVhRI 656 (1033)
..+ .|.++.|.
T Consensus 229 g~~D~fp~~D~~l~~~ 244 (283)
T PRK10308 229 QAKDVFLPDDYLIKQR 244 (283)
T ss_pred CCCCCCCcccHHHHHh
Confidence 554 33366653
No 47
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=60.69 E-value=2 Score=48.14 Aligned_cols=83 Identities=11% Similarity=-0.048 Sum_probs=56.8
Q ss_pred CCcccccccCCHHHHH-HHhhcCcchheeccccceeecccc---ccccC--C--chhhhhhcccccccCCCCcccchhcc
Q psy12564 572 VLPAHKMSLAPERKIA-QFNNRNKLVLLHTKTTHVKTVPSE---NVQNT--K--GKFELLKEIKFERTGSEDTSEDVEES 643 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~-~~~~r~ka~~~~~ka~~~~~v~~~---~~ev~--~--g~eeLlklpGVGrk~~~~TAn~V~~~ 643 (1033)
.|.++.+..++++.+. .-..++|+.-+...| ..+.+.+ +.-.+ . -.|+|++++|||++ ||++++=-
T Consensus 144 fptpe~l~~~~~~~l~~~g~s~~Ka~yi~~~A--~~~~~g~~~~~~l~~~~~e~a~e~L~~i~GIG~W----TAe~~llf 217 (285)
T COG0122 144 FPTPEQLAAADEEALRRCGLSGRKAEYIISLA--RAAAEGELDLSELKPLSDEEAIEELTALKGIGPW----TAEMFLLF 217 (285)
T ss_pred CCCHHHHHhcCHHHHHHhCCcHHHHHHHHHHH--HHHHcCCccHHHhccCCHHHHHHHHHcCCCcCHH----HHHHHHHH
Confidence 5678889999999875 455678999998888 4444442 11111 1 13779999999996 99999987
Q ss_pred cCCCC-----CCCCcccccccc
Q psy12564 644 GFFTV-----EPIPDSNLYNEW 660 (1033)
Q Consensus 644 ~f~~~-----~p~HVhRIsNRw 660 (1033)
++..+ .|.++-|...+.
T Consensus 218 ~lgr~dvfP~~D~~lr~~~~~~ 239 (285)
T COG0122 218 GLGRPDVFPADDLGLRRAIKKL 239 (285)
T ss_pred cCCCCCCCChHHHHHHHHHHHH
Confidence 75544 333565555554
No 48
>KOG2875|consensus
Probab=56.12 E-value=4.6 Score=45.66 Aligned_cols=73 Identities=4% Similarity=-0.033 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCcchheeccccceeecccccc-----cc-----CCchhhhhhcccccccCCCCcccchhcccCCCC----
Q psy12564 583 ERKIAQFNNRNKLVLLHTKTTHVKTVPSENV-----QN-----TKGKFELLKEIKFERTGSEDTSEDVEESGFFTV---- 648 (1033)
Q Consensus 583 e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~-----ev-----~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~---- 648 (1033)
|.++.++==-|.|++|...| ..+.++..+ +. -...|+|..|||||-| .|.-|.-.++...
T Consensus 173 Ea~LR~~gfGYRAkYI~~ta--~~l~~~~g~~~wLqsl~~~~yeear~~L~~lpGVG~K----VADCI~Lm~l~~~~~VP 246 (323)
T KOG2875|consen 173 EAELRKLGFGYRAKYISATA--RALQEKQGGLAWLQSLRKSSYEEAREALCSLPGVGPK----VADCICLMSLDKLSAVP 246 (323)
T ss_pred HHHHHHcCcchhHHHHHHHH--HHHHHhcccchHHHHHhcccHHHHHHHHhcCCCCcch----HhhhhhhhhcCCCCccc
Confidence 44554443346677777666 344433333 00 0123779999999996 8887776665443
Q ss_pred CCCCccccccccccC
Q psy12564 649 EPIPDSNLYNEWEYR 663 (1033)
Q Consensus 649 ~p~HVhRIsNRwG~v 663 (1033)
+++||.||++ +|.
T Consensus 247 VDvHi~ria~--~y~ 259 (323)
T KOG2875|consen 247 VDVHIWRIAQ--DYI 259 (323)
T ss_pred chhhHHHHhh--ccc
Confidence 7779999999 455
No 49
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=45.66 E-value=5.4 Score=29.39 Aligned_cols=19 Identities=37% Similarity=0.288 Sum_probs=16.1
Q ss_pred hhhhhcccccccCCCCcccchhc
Q psy12564 620 FELLKEIKFERTGSEDTSEDVEE 642 (1033)
Q Consensus 620 eeLlklpGVGrk~~~~TAn~V~~ 642 (1033)
++|.++||||.| +|..+++
T Consensus 1 ~~L~~i~GiG~k----~A~~il~ 19 (26)
T smart00278 1 EELLKVPGIGPK----TAEKILE 19 (26)
T ss_pred ChhhhCCCCCHH----HHHHHHH
Confidence 468999999996 8888876
No 50
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=41.98 E-value=54 Score=37.92 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=31.4
Q ss_pred eEEEEEEEcCCCcchhhh--------HHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCc
Q psy12564 882 QFYLVNVYAPAAKEDLSM--------LSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNH 935 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~er--------Ld~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~e 935 (1033)
.+.++|+|+=+....... ...|.+-+......+... ....++++.||||...+.
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld~ 143 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLDG 143 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeecc
Confidence 588999999776543211 122322222222222332 457899999999987653
No 51
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=41.79 E-value=5.2 Score=45.83 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=57.9
Q ss_pred eeeccccccccCCchhhhhhcccccccCCCCcccchhcccCCCC----CCCCccccccccccCChHHHHhhhcCcccccc
Q psy12564 605 VKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTV----EPIPDSNLYNEWEYRPPKRKKASRKNVFSFKL 680 (1033)
Q Consensus 605 ~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~----~p~HVhRIsNRwG~vP~ktEkAL~k~~~w~~i 680 (1033)
++.......++|-|.++|++.||+|-| |.+.+-...++-.. .++.-|++++.-||-.-..++=|++.++|+.-
T Consensus 78 ~~~le~lk~~~P~gl~~Ll~v~GlGpk---Ki~~Ly~elgi~~~e~l~~a~~~~~~~~l~GfG~kse~~il~~i~~~~~~ 154 (326)
T COG1796 78 VKKLEALKKEVPEGLEPLLKVPGLGPK---KIVSLYKELGIKDLEELQEALENGKIRGLRGFGKKSEAKILENIEFAEES 154 (326)
T ss_pred cHHHHHHHHhCCcchHHHhhCCCCCcH---HHHHHHHHHCcccHHHHHHHHHhCCccccCCccchhHHHHHHHHHHHhhh
Confidence 445667778999999999999999997 89999999985554 44578899998898776667777776666653
No 52
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=40.23 E-value=12 Score=24.48 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=4.2
Q ss_pred ccccCCCCCcc
Q psy12564 446 TKRRGRPKKTT 456 (1033)
Q Consensus 446 ~~~~~~~~~~~ 456 (1033)
++.||||+|..
T Consensus 1 ~r~RGRP~k~~ 11 (13)
T PF02178_consen 1 KRKRGRPRKNA 11 (13)
T ss_dssp S--SS--TT--
T ss_pred CCcCCCCcccc
Confidence 47899999864
No 53
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=36.13 E-value=3 Score=36.97 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=28.4
Q ss_pred CcchheeccccceeeccccccccCCchhhhhhcccccccCCCCcccchhc
Q psy12564 593 NKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEE 642 (1033)
Q Consensus 593 ~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~ 642 (1033)
.|+..|+.-+ ..|......+....++|.++||||.+ +|+.|.+
T Consensus 23 ~r~~aY~~Aa---~~i~~l~~~i~~~~~~~~~l~gIG~~----ia~kI~E 65 (68)
T PF14716_consen 23 FRARAYRRAA---AAIKALPYPITSGEEDLKKLPGIGKS----IAKKIDE 65 (68)
T ss_dssp HHHHHHHHHH---HHHHHSSS-HHSHHHHHCTSTTTTHH----HHHHHHH
T ss_pred HHHHHHHHHH---HHHHhCCHhHhhHHHHHhhCCCCCHH----HHHHHHH
Confidence 3445555444 45556666777773459999999996 8887754
No 54
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=21.18 E-value=75 Score=39.72 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=25.7
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCC-cE--EEEeccc
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDL-NV--FCIQEIR 783 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dP-DV--IcLQETk 783 (1033)
-.+-|+||||+|-..... -.+.+||...+| || |+|||+-
T Consensus 108 ~rv~v~TWNV~g~~p~~~------------l~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 108 IRVTIGTWNVAGRLPSED------------LEIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred eEEEEEEeecCCCCCccc------------CCHHHhccCCCCCCEEEEeeEEec
Confidence 346788999988754431 236666766554 65 6679984
No 55
>PRK08609 hypothetical protein; Provisional
Probab=20.91 E-value=35 Score=41.85 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=45.0
Q ss_pred HHHHHHhhcCcchheeccccceeeccccccccCCchhhhhhcccccccCCCCcccchh-cccCCCCCCC----Ccccccc
Q psy12564 584 RKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVE-ESGFFTVEPI----PDSNLYN 658 (1033)
Q Consensus 584 ~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~-~~~f~~~~p~----HVhRIsN 658 (1033)
++|.+++..-+...+ .....++|.+..+|++.||||.| ||...- ..|+-+..++ +-+|+.+
T Consensus 62 ~kI~Eil~tG~~~~l----------e~l~~~~p~~~~~l~~i~GiGpk----~a~~l~~~lGi~tl~~L~~a~~~~~~~~ 127 (570)
T PRK08609 62 EVIQEYRETGESSVL----------QELKKEVPEGLLPLLKLPGLGGK----KIAKLYKELGVVDKESLKEACENGKVQA 127 (570)
T ss_pred HHHHHHHHhCChHHH----------HHHHhhCcHHHHHHhcCCCCCHH----HHHHHHHHhCCCCHHHHHHHHHhCChhh
Confidence 477777733333333 33334689999999999999996 776665 5775555443 6788888
Q ss_pred ccccC
Q psy12564 659 EWEYR 663 (1033)
Q Consensus 659 RwG~v 663 (1033)
..|+=
T Consensus 128 ~~gfg 132 (570)
T PRK08609 128 LAGFG 132 (570)
T ss_pred ccCcc
Confidence 77773
No 56
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=20.84 E-value=32 Score=29.62 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.2
Q ss_pred hhhhhhcccccccCCCCcccchhcccCCCC
Q psy12564 619 KFELLKEIKFERTGSEDTSEDVEESGFFTV 648 (1033)
Q Consensus 619 ~eeLlklpGVGrk~~~~TAn~V~~~~f~~~ 648 (1033)
.++|.++||||.+ +|....+.||.+.
T Consensus 4 ~~~L~~I~Gig~~----~a~~L~~~G~~t~ 29 (60)
T PF14520_consen 4 FDDLLSIPGIGPK----RAEKLYEAGIKTL 29 (60)
T ss_dssp HHHHHTSTTCHHH----HHHHHHHTTCSSH
T ss_pred HHhhccCCCCCHH----HHHHHHhcCCCcH
Confidence 3679999999996 9999999996654
Done!