Query psy12564
Match_columns 1033
No_of_seqs 204 out of 1493
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 5.2E-41 1.8E-45 341.6 23.1 250 733-1032 2-256 (265)
2 2o3h_A DNA-(apurinic or apyrim 100.0 1.1E-36 3.8E-41 311.5 24.2 257 727-1033 21-285 (285)
3 1hd7_A DNA-(apurinic or apyrim 100.0 4.1E-37 1.4E-41 324.4 21.2 257 727-1033 54-318 (318)
4 2j63_A AP-endonuclease; base e 100.0 1.8E-36 6.3E-41 342.7 26.7 272 732-1033 147-466 (467)
5 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 5.2E-36 1.8E-40 300.1 25.7 245 735-1033 2-257 (257)
6 2jc5_A Exodeoxyribonuclease; h 100.0 1.2E-36 4.1E-41 303.6 18.4 249 735-1033 2-256 (259)
7 2jc4_A Exodeoxyribonuclease II 100.0 1.1E-35 3.7E-40 296.1 22.6 246 735-1033 1-256 (256)
8 1ako_A Exonuclease III; AP-end 100.0 8.8E-34 3E-38 284.2 17.8 245 735-1032 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 3.5E-32 1.2E-36 267.4 23.9 227 732-1032 5-238 (238)
10 1wdu_A TRAS1 ORF2P; four-layer 100.0 2.4E-27 8.2E-32 239.1 24.6 224 731-1033 16-243 (245)
11 2ei9_A Non-LTR retrotransposon 100.0 4E-28 1.4E-32 250.3 17.7 212 733-1033 6-219 (240)
12 4fva_A 5'-tyrosyl-DNA phosphod 99.9 5.7E-26 2E-30 223.8 23.5 231 726-1032 5-255 (256)
13 4gew_A 5'-tyrosyl-DNA phosphod 99.9 2.6E-26 8.8E-31 250.3 22.1 232 725-1032 110-361 (362)
14 3teb_A Endonuclease/exonucleas 99.9 1.5E-25 5E-30 224.5 20.1 232 733-1033 2-266 (266)
15 4f1h_A Tyrosyl-DNA phosphodies 99.9 1.3E-24 4.6E-29 209.0 16.9 228 733-1032 2-249 (250)
16 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.2E-24 4.2E-29 213.8 15.5 230 732-1033 7-254 (256)
17 3l1w_A Uncharacterized protein 99.9 5.2E-24 1.8E-28 214.3 19.0 236 735-1033 1-251 (257)
18 3g6s_A Putative endonuclease/e 99.9 1.5E-23 5E-28 212.7 19.3 236 733-1032 2-259 (267)
19 3mpr_A Putative endonuclease/e 99.9 5E-22 1.7E-26 207.0 18.5 238 732-1032 4-288 (298)
20 1zwx_A SMCL, sphingomyelinase- 99.9 2.3E-21 7.8E-26 199.4 21.6 237 730-1033 6-300 (301)
21 2ddr_A Sphingomyelin phosphodi 99.9 3.4E-20 1.2E-24 190.7 21.8 245 732-1033 7-305 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 3.7E-19 1.3E-23 188.7 16.2 237 730-1030 25-315 (317)
23 3ngq_A CCR4-NOT transcription 99.7 1.7E-16 5.9E-21 177.0 17.3 117 694-823 3-138 (398)
24 2a40_B Deoxyribonuclease-1; WA 99.6 1.4E-15 4.6E-20 155.8 9.9 225 735-1032 1-260 (260)
25 2f1n_A CDT B, cytolethal diste 99.6 1.3E-14 4.3E-19 154.5 16.5 149 733-935 14-192 (262)
26 4b8c_D Glucose-repressible alc 99.6 5.1E-16 1.7E-20 183.0 6.3 88 731-818 391-496 (727)
27 1sr4_B CDT B, cytolethal diste 99.6 3.2E-14 1.1E-18 151.6 18.1 148 734-933 4-182 (261)
28 3n5n_X A/G-specific adenine DN 99.6 1.2E-16 4.1E-21 172.1 -2.7 129 573-710 79-231 (287)
29 1orn_A Endonuclease III; DNA r 99.5 1.5E-16 5.3E-21 165.2 -4.5 130 573-710 63-211 (226)
30 2abk_A Endonuclease III; DNA-r 99.5 2E-16 6.9E-21 162.2 -4.7 130 573-710 59-206 (211)
31 1kea_A Possible G-T mismatches 99.5 7.2E-16 2.5E-20 159.4 -5.5 128 573-709 65-215 (221)
32 1kg2_A A/G-specific adenine gl 99.5 1.3E-15 4.5E-20 157.7 -4.0 128 574-710 61-211 (225)
33 3fsp_A A/G-specific adenine gl 99.4 4.9E-15 1.7E-19 162.8 -4.1 129 573-710 69-220 (369)
34 2imq_X Salivary nitrophorin; f 99.3 1.8E-12 6.1E-17 137.3 5.4 38 996-1033 241-280 (282)
35 1i9z_A Synaptojanin, phosphati 99.2 1.4E-09 4.8E-14 119.7 21.1 49 882-933 159-212 (347)
36 3fhf_A Mjogg, N-glycosylase/DN 99.1 8.6E-13 2.9E-17 137.0 -6.6 111 576-694 71-196 (214)
37 1pu6_A 3-methyladenine DNA gly 99.0 7.6E-12 2.6E-16 129.5 -6.8 110 575-690 69-212 (218)
38 2xsw_A 72 kDa inositol polypho 98.9 5.5E-09 1.9E-13 115.6 12.4 74 732-820 25-109 (357)
39 3fhg_A Mjogg, N-glycosylase/DN 98.7 2.4E-10 8.1E-15 117.4 -6.7 109 576-694 60-189 (207)
40 3n0u_A Probable N-glycosylase/ 98.6 2.3E-09 7.9E-14 111.7 -3.5 84 576-665 77-174 (219)
41 3mtc_A Type II inositol-1,4,5- 98.5 1.4E-06 4.9E-11 95.2 16.1 38 734-785 9-50 (313)
42 4a9c_A Phosphatidylinositol-3, 98.1 2E-05 7E-10 86.3 14.0 39 995-1033 271-311 (316)
43 4e9f_A Methyl-CPG-binding doma 97.9 5E-07 1.7E-11 90.3 -2.7 65 574-646 62-126 (161)
44 2xhi_A N-glycosylase/DNA lyase 97.9 5.4E-07 1.8E-11 99.9 -4.2 109 572-686 196-331 (360)
45 3i0w_A 8-oxoguanine-DNA-glycos 97.6 1.6E-06 5.4E-11 93.4 -5.8 112 572-689 158-286 (290)
46 2h56_A DNA-3-methyladenine gly 97.5 2.4E-06 8.2E-11 89.3 -5.2 85 573-663 85-181 (233)
47 2yg9_A DNA-3-methyladenine gly 96.8 7E-05 2.4E-09 78.0 -3.1 83 573-661 93-188 (225)
48 4b21_A Probable DNA-3-methylad 96.8 6E-05 2.1E-09 79.1 -4.2 79 572-660 95-191 (232)
49 1mpg_A ALKA, 3-methyladenine D 96.1 0.00045 1.5E-08 73.8 -2.4 93 573-673 156-259 (282)
50 2jhn_A ALKA, 3-methyladenine D 95.8 0.0004 1.4E-08 74.8 -4.6 82 573-663 162-254 (295)
51 3s6i_A DNA-3-methyladenine gly 95.2 0.00095 3.3E-08 69.7 -4.1 80 572-660 84-180 (228)
52 2ihm_A POL MU, DNA polymerase 26.0 4.5 0.00015 45.0 -4.0 75 556-643 2-80 (360)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=5.2e-41 Score=341.62 Aligned_cols=250 Identities=34% Similarity=0.655 Sum_probs=213.1
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCce
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYA 809 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGys 809 (1033)
..|||+||||+|++... .+.+.++|++.+|||||||||+.....+... ..||..++.....++++
T Consensus 2 ~~l~i~s~Nv~g~~~~~------------~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~ 69 (265)
T 3g91_A 2 AVLKIISWNVNGLRAVH------------RKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYS 69 (265)
T ss_dssp CEEEEEEEECSCHHHHH------------HHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSC
T ss_pred CccEEEEEEcCCchhhh------------hhhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccCCCCCcC
Confidence 46999999999997654 2359999999999999999998765444432 47999888776677889
Q ss_pred EEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEE
Q psy12564 810 GVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889 (1033)
Q Consensus 810 GVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVY 889 (1033)
|||||+|.++..+..++. .... | .+||++.+++..+.|+|+|
T Consensus 70 Gvail~k~~~~~~~~~~~---------------~~~~--d---------------------~~gr~i~~~~~~~~i~~vy 111 (265)
T 3g91_A 70 GVAMYTKVPPSSLREGFG---------------VERF--D---------------------TEGRIQIADFDDFLLYNIY 111 (265)
T ss_dssp CEEEEESSCCSEEECCCS---------------CHHH--H---------------------SBSCEEEEECSSCEEEEEE
T ss_pred EEEEEEecChHHhccCCC---------------Cccc--C---------------------CcCCEEEEEeCCEEEEEEE
Confidence 999999999877654432 0001 1 5899999999999999999
Q ss_pred cCCCcchhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCee
Q psy12564 890 APAAKEDLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968 (1033)
Q Consensus 890 lPng~sd~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvD 968 (1033)
+|++....+++.+|.+|++.|.+++.++ ..+.|+|||||||+++.++|..++..+.+..|+.+.++++|..+++.||.|
T Consensus 112 ~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D 191 (265)
T 3g91_A 112 FPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVD 191 (265)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEE
T ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHHHHHHHHHHhcCcEE
Confidence 9999887778889999999999999887 347899999999999999999888877788999999999999999999999
Q ss_pred hhcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEE
Q psy12564 969 VHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032 (1033)
Q Consensus 969 A~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLd 1032 (1033)
+||.++|..+.||||+++.+ +..+.++||||||+++.+...+.++.|.....+|||+||++++.
T Consensus 192 ~~r~~~p~~~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~ 256 (265)
T 3g91_A 192 TFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE 256 (265)
T ss_dssp THHHHCCCSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred eeHhhCCCCCCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhh
Confidence 99999998889999998876 66778999999999999988899999998777899999999985
No 2
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=1.1e-36 Score=311.52 Aligned_cols=257 Identities=42% Similarity=0.801 Sum_probs=200.0
Q ss_pred cCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCC-ceEeec
Q psy12564 727 RQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGY-HAFWFP 802 (1033)
Q Consensus 727 ~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY-~syfs~ 802 (1033)
.+......|||+||||+|++... .+.+.++|++++|||||||||+.....+... ..|| +.++..
T Consensus 21 ~~~~~~~~l~v~t~Ni~~~~~~~------------~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~ 88 (285)
T 2o3h_A 21 SPSGKPATLKIASWNVDGLRAWI------------KKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 88 (285)
T ss_dssp CTTSCBCCEEEEEEECSSHHHHH------------HTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEEC
T ss_pred CCCCCccceEEEEEecccChhhh------------hhhHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEec
Confidence 34556678999999999886443 1238999999999999999998765444321 5689 666665
Q ss_pred -CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEec
Q psy12564 803 -GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE 881 (1033)
Q Consensus 803 -s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~ 881 (1033)
....|+.|+|||+|+++..+..+++ .... + .++|++.+++.
T Consensus 89 ~~~~~g~~Gvailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~r~l~~~~~ 130 (285)
T 2o3h_A 89 PSDKEGYSGVGLLSRQCPLKVSYGIG---------------DEEH--D---------------------QEGRVIVAEFD 130 (285)
T ss_dssp BC--CCSCCEEEEESSCCSEEEESCS---------------CGGG--S---------------------SBCCEEEEECS
T ss_pred ccCCcccceEEEEEccChHHeeeccC---------------Cccc--C---------------------CCCcEEEEEeC
Confidence 3355677999999999776654332 0001 1 46888888888
Q ss_pred eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHH-HH
Q psy12564 882 QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SN 960 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L-~e 960 (1033)
.+.|+|+|+|+......++.+|.+|++.|.+++.++....|+|||||||+.+..+|.+.+..+.+..|+++.++.+| ..
T Consensus 131 ~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~ 210 (285)
T 2o3h_A 131 SFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEL 210 (285)
T ss_dssp SCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHHHHHHHHH
Confidence 99999999999876656677788898999888887644689999999999998888876665556678888888999 88
Q ss_pred HHhcCCeehhcccCCCCC-ccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 961 FLDLGFLDVHRHLYPNHR-IYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 961 LLsaGLvDA~R~~~Pd~g-~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
++..||.|+|+..+|..+ .||||++..+ +..+.+.||||||+++++...+.++.+.....+|||+||+++|.|
T Consensus 211 ~l~~~l~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 211 LQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 285 (285)
T ss_dssp HHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEECC
T ss_pred HhcCCCEEEEEecCCCCCCcEeEecCcCCccccCceeEEEEEEECHHHHhhhhheEeeccCCCCCeecEEEEecC
Confidence 888899999999888654 5999987654 323457899999999988877889999876668999999999975
No 3
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=4.1e-37 Score=324.43 Aligned_cols=257 Identities=42% Similarity=0.798 Sum_probs=196.6
Q ss_pred cCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC---CCCCC-ceEeec
Q psy12564 727 RQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---CPEGY-HAFWFP 802 (1033)
Q Consensus 727 ~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~---el~GY-~syfs~ 802 (1033)
.+......|||+||||+|++... .+.+.++|++++|||||||||+.....+.. ...|| +.++..
T Consensus 54 ~~~~~~~~lrv~t~Nv~g~~~~~------------~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~ 121 (318)
T 1hd7_A 54 SPSGKPATLKICSWNVDGLRAWI------------KKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121 (318)
T ss_dssp CTTSCBCCEEEEEEECSSHHHHH------------HTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEEC
T ss_pred CCCCCCCceEEEEEecCcchhhh------------hhhHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEec
Confidence 44556678999999999886543 123899999999999999999876543332 15689 666665
Q ss_pred -CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEec
Q psy12564 803 -GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE 881 (1033)
Q Consensus 803 -s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~ 881 (1033)
....|+.|+|||||+++..+..+++ ...+ + .+||++.+++.
T Consensus 122 ~~~~~g~~Gvailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~r~l~~~~~ 163 (318)
T 1hd7_A 122 PSDKEGYSGVGLLSRQCPLKVSYGIG---------------DEEH--D---------------------QEGRVIVAEFD 163 (318)
T ss_dssp C-----CCCEEEEESSCCSEEEESCS---------------CGGG--S---------------------SSSCEEEEECS
T ss_pred CCCCCccceEEEEEcCCceeEEecCC---------------Cccc--C---------------------CCCcEEEEEcC
Confidence 3345677999999999877654332 0001 1 46888888889
Q ss_pred eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHH-HH
Q psy12564 882 QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SN 960 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L-~e 960 (1033)
.+.|+|+|+|+......++.+|.+|++.|.+++.++....|+|||||||+.+.++|.+++..+.+..|+++.++.+| ..
T Consensus 164 ~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~ 243 (318)
T 1hd7_A 164 SFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEL 243 (318)
T ss_dssp SCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHHHHHHHHH
Confidence 99999999999876656677788899999888877633489999999999998889877766667788998899999 89
Q ss_pred HHhcCCeehhcccCCCCC-ccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 961 FLDLGFLDVHRHLYPNHR-IYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 961 LLsaGLvDA~R~~~Pd~g-~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
++..||.|+|+..+|..+ .||||++..+ +..+.++||||||+++++...+.++.|.....+|||+||+++|.|
T Consensus 244 ll~~~l~D~~r~~~p~~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 244 LQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318 (318)
T ss_dssp HHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEECC
T ss_pred HhhCCCEEeehhhCCCCCCCcceECCcCCCcccCCceEEEEEEECHHHHhhhhheEeeccCCCCCccCEEEEecC
Confidence 988899999999888754 5999987654 333467899999999998877889999876668999999999975
No 4
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=1.8e-36 Score=342.68 Aligned_cols=272 Identities=28% Similarity=0.481 Sum_probs=201.7
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCC----C-CCCCCceEeecC-CC
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----E-CPEGYHAFWFPG-TR 805 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~----~-el~GY~syfs~s-~k 805 (1033)
...|||+||||+|++...+. ....|.++|++++|||||||||+.....++ . ...||+.+|... ..
T Consensus 147 ~~~LKI~TwNVnGl~~~~kr---------~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~~~~ 217 (467)
T 2j63_A 147 SRMYKFITWNVAGLRGLLKK---------NASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFK 217 (467)
T ss_dssp TTEEEEEEEECSCHHHHHHH---------CTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSS
T ss_pred CCCeEEEEEEcCCCcccccc---------cHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecccCC
Confidence 46799999999998765310 014799999999999999999997654432 1 257898777653 46
Q ss_pred CCceEEEEEEcCCcc------eEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEE
Q psy12564 806 QGYAGVAVLSKTKPV------RVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVE 879 (1033)
Q Consensus 806 kGysGVAILSR~PIl------kVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVE 879 (1033)
.|++|||||+|+++. .+..++. +... . + +.+...+ |.+. +.....+||++.++
T Consensus 218 ~g~~GVAIlsR~pi~~~~l~~~~~~~~~------~p~~--~---~----~~~~~gs-~~~~-----~~~~D~egR~I~a~ 276 (467)
T 2j63_A 218 RGYSGTRTYMKNSTTVKGLHARCTRGFA------LPSE--P---Q----ADAAAGS-RVLV-----EGAGDEEGRVLTTF 276 (467)
T ss_dssp TTSCCEEEEEECCCCCCTSCCEEEESSC------CCCC---------------------CC-----CCCCCTTCCEEEEE
T ss_pred CCcceEEEEEeCCccccccceeeeeccc------cccc--c---c----ccccccc-cccc-----ccccCCCCcEEEEE
Confidence 678999999999974 2333332 0000 0 0 0000000 0000 00001589999888
Q ss_pred e----------ceEEEEEEEcCCCcchhhhHHHHH-HHHHHHHHHHHhhc-------------------CCCCEEEeccC
Q psy12564 880 Y----------EQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLRGHLKSLN-------------------EIKPVVLAGDL 929 (1033)
Q Consensus 880 f----------~~LtIINVYlPng~sd~erLd~R~-kFld~L~e~L~qL~-------------------ag~PVII~GDF 929 (1033)
+ ..+.|+|+|+|++....+++.+|. .|++.|.+++.++. .+.|+||||||
T Consensus 277 ~~~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDF 356 (467)
T 2j63_A 277 LSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDL 356 (467)
T ss_dssp ECSSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEEC
T ss_pred EEeCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccc
Confidence 7 579999999999876566777776 45577777777653 35799999999
Q ss_pred CCcCCcccccc---ccccCCCCCCChHHHHHHHHHH-hcCCeehhcccCCCC-CccccCCCCCC-CCCCCccceeEEEEc
Q psy12564 930 NVAHNHIDVAL---PLTNLGKSGFTIQERNYFSNFL-DLGFLDVHRHLYPNH-RIYTYWPYYDR-PSKMKGWRLDYFLIS 1003 (1033)
Q Consensus 930 Naap~eiD~ad---pk~n~g~sGft~eERa~L~eLL-saGLvDA~R~~~Pd~-g~YTw~S~r~n-r~~n~GsRIDyILVS 1003 (1033)
|+.+.++|.++ |..+.+..||+++|+.+|..++ ..||.|+||.++|.. +.||||+++.+ +..+.++||||||++
T Consensus 357 N~~p~~~D~~~~~~~~~~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS 436 (467)
T 2j63_A 357 NVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVS 436 (467)
T ss_dssp CCCCSTTSBCCCSCHHHHTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEE
T ss_pred cCCCchhhhccccchhhcccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEc
Confidence 99999999877 6666677899999999999988 479999999999864 57999998876 666789999999999
Q ss_pred ccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 1004 ~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
+.+...+..+.|.....+||||||+++|.+
T Consensus 437 ~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 437 SRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp GGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred HHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 998878899999987779999999999975
No 5
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.2e-36 Score=300.12 Aligned_cols=245 Identities=29% Similarity=0.485 Sum_probs=192.7
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC---CCCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---CPEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~---el~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++.. .+.+.++|++++|||||||||+.....+.. ...||+.++.+ ..+++|+
T Consensus 2 lrv~t~Nv~g~~~~-------------~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~G~ 66 (257)
T 2voa_A 2 LKIATFNVNSIRSR-------------LHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG--SKGRNGV 66 (257)
T ss_dssp EEEEEEECSCGGGT-------------HHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE--ETTEEEE
T ss_pred eEEEEEecCChHHH-------------HHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC--CCCccEE
Confidence 89999999988543 257999999999999999999875433332 14789877654 4567899
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP 891 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP 891 (1033)
|||||+++..+..+++ .. . . .++|++.+++..+.++|+|+|
T Consensus 67 ailsr~~~~~~~~~~~-----------------~~--~------------------~--~~~r~l~~~~~~~~v~~~h~p 107 (257)
T 2voa_A 67 AIASLEEPEDVSFGLD-----------------SE--P------------------K--DEDRLIRAKIAGIDVINTYVP 107 (257)
T ss_dssp EEEESSCCEEEEESCS-----------------SS--S------------------C--CGGGEEEEEETTEEEEEEECC
T ss_pred EEEEccChHHheecCC-----------------CC--c------------------c--ccCcEEEEEECCEEEEEEEeC
Confidence 9999999765543332 00 0 0 157888888889999999999
Q ss_pred CCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCeeh
Q psy12564 892 AAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969 (1033)
Q Consensus 892 ng~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvDA 969 (1033)
+... +.+++..|.+|++.|.+++.++ ..+.|+|||||||+.+.+.|.+++..+.+..++++.++.++..+++.||.|+
T Consensus 108 ~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~ 187 (257)
T 2voa_A 108 QGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILELGFVDV 187 (257)
T ss_dssp CCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHHHHHHHHHHHcCcEee
Confidence 9764 3355666778888888888765 4578999999999999888887776666677888888889998888899999
Q ss_pred hcccCCCCCccccCCC-CCC-CCCCCccceeEEEEcccccccceeEEEeCC----CCCCCccceEEEEEC
Q psy12564 970 HRHLYPNHRIYTYWPY-YDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGD----VEGSDHAPQILYLNL 1033 (1033)
Q Consensus 970 ~R~~~Pd~g~YTw~S~-r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~----~~gSDH~PViLdLdL 1033 (1033)
|+..+|..+.||||++ +.+ +..+.++||||||+++++...+.++.|... ..+|||+||+++|++
T Consensus 188 ~~~~~p~~~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 188 LRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp HHHHSTTCCCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEECC
T ss_pred ehhhCCCCCCcceeccccCCceecCceEEEEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEeC
Confidence 9998887678999987 544 444567899999999988777888888764 257999999999875
No 6
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1.2e-36 Score=303.56 Aligned_cols=249 Identities=31% Similarity=0.572 Sum_probs=195.3
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC---CCCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---CPEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~---el~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++... .+.+.++|++++||||||||++.....+.. ...||..++......++.|+
T Consensus 2 l~v~t~Ni~~~~~~~------------~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~~G~ 69 (259)
T 2jc5_A 2 LKIISANVNGIRSAY------------KKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGV 69 (259)
T ss_dssp EEEEEEECSSHHHHH------------HTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCE
T ss_pred cEEEEEeeccHHHHH------------HhHHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEeccCCCCcceE
Confidence 899999999885432 124999999999999999999876443332 14689877765445667899
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP 891 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP 891 (1033)
|||||+++..+..+++ .+.. + ..||++.+++..+.|+|+|+|
T Consensus 70 ailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~r~~~~~~~~~~v~~~h~~ 111 (259)
T 2jc5_A 70 AVYSKRKPDNVQIGMG---------------IEEF--D---------------------REGRFVRCDFGRLSVISLYLP 111 (259)
T ss_dssp EEEESSCCSEEEESCS---------------CHHH--H---------------------TTCCEEEEEETTEEEEEEECC
T ss_pred EEEEecCceeEEeCCC---------------CCcc--C---------------------CCCeEEEEEcCCEEEEEEecc
Confidence 9999999876654332 0001 1 467888888899999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHH-hcCCeeh
Q psy12564 892 AAKEDLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DLGFLDV 969 (1033)
Q Consensus 892 ng~sd~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLL-saGLvDA 969 (1033)
+.....++..+|.+|++.|.+++.++ ..+.|+|||||||+.+...|.+.+..+.+..|+.+.++..+..++ ..||.|+
T Consensus 112 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~ 191 (259)
T 2jc5_A 112 SGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDM 191 (259)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHHHHHHHHHhccCCcEEe
Confidence 98765566667778888888888765 357899999999999998888777666667788888888898888 6799999
Q ss_pred hcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 970 HRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 970 ~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
|+..+|.+.+||||++... +..+.+.||||||+++++...+.++.+.....+|||+||+++|.+
T Consensus 192 ~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~ 256 (259)
T 2jc5_A 192 WRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256 (259)
T ss_dssp HHHHCTTCCCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESC
T ss_pred eHhhCCCCCCccEECCcCCCccCCCeeEEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEec
Confidence 9998887667999987653 333456899999999988777888998866678999999999864
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=1.1e-35 Score=296.14 Aligned_cols=246 Identities=27% Similarity=0.466 Sum_probs=192.2
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++.. .+.+.++|++++||||||||++......... ..||+.++.+ ..++.|+
T Consensus 1 lrv~t~Nv~~~~~~-------------~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~--~~~~~G~ 65 (256)
T 2jc4_A 1 MKITTWNVNSLNVR-------------LPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG--QKTYNGV 65 (256)
T ss_dssp CEEEEEECSCHHHH-------------HHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC--CSSSCCE
T ss_pred CEEEEEEcCCcHHH-------------HHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC--CCcceEE
Confidence 69999999987543 3679999999999999999998764333211 4689877654 4567899
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcC
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP 891 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlP 891 (1033)
|||+|+++..+..+++ .... + ..+|++.+++..+.|+|+|+|
T Consensus 66 ailsr~~~~~~~~~~~---------------~~~~--~---------------------~~~~~~~~~~~~~~v~~~h~~ 107 (256)
T 2jc4_A 66 AIVSRSVPQDVHFGLP---------------ALPD--D---------------------PQRRVIAATVSGVRVINVYCV 107 (256)
T ss_dssp EEEESSCCEEEEESCT---------------TSTT--C---------------------CSCCEEEEEETTEEEEEEECC
T ss_pred EEEECCChHHheecCC---------------CCcc--C---------------------CcCcEEEEEeCCEEEEEEEec
Confidence 9999999776544332 0001 1 467888888889999999999
Q ss_pred CCcc-hhhhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCeeh
Q psy12564 892 AAKE-DLSMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDV 969 (1033)
Q Consensus 892 ng~s-d~erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvDA 969 (1033)
+... ..+++..|..|++.|.+++.++ ..+.|+|||||||+.+...|..++..+.+..++.+.++..+..+++.||.|+
T Consensus 108 ~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~D~ 187 (256)
T 2jc4_A 108 NGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDS 187 (256)
T ss_dssp CCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTTTCEEH
T ss_pred CCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHHHHHHHHHHhcCcEEh
Confidence 9865 2345666778888888888775 4678999999999998888877666666777888888999998888899999
Q ss_pred hcccCCCCCccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCC----CCCCCccceEEEEEC
Q psy12564 970 HRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGD----VEGSDHAPQILYLNL 1033 (1033)
Q Consensus 970 ~R~~~Pd~g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~----~~gSDH~PViLdLdL 1033 (1033)
|+..+|..+.||||++..+ ++.+.+.||||||+++++...+.++.+... ..+|||+||+++|+|
T Consensus 188 ~~~~~~~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 188 LRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp HHHHCCSSCCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEECC
T ss_pred hhhhCCCCCceeeEcCCCCccccCcEEEEEEEEECHHHHhheeEEEEEhhcccCCCCCCcccEEEEecC
Confidence 9988887678999987654 333457899999999988767888888753 357999999999975
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=8.8e-34 Score=284.23 Aligned_cols=245 Identities=26% Similarity=0.472 Sum_probs=182.8
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC---CCCCceEeecCCCCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC---PEGYHAFWFPGTRQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e---l~GY~syfs~s~kkGysGV 811 (1033)
|||+||||+|++.. .+.+.++|++.+||||||||++......... ..||..++.+ ..++.|+
T Consensus 1 lrv~t~Nv~~~~~~-------------~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~--~~~~~G~ 65 (268)
T 1ako_A 1 MKFVSFNINGLRAR-------------PHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHG--QKGHYGV 65 (268)
T ss_dssp CEEEEEECSCGGGC-------------HHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEE--ETTEEEE
T ss_pred CEEEEEehhHHHHH-------------HHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeC--CCCcceE
Confidence 69999999988543 3679999999999999999998754333221 2689877654 4567899
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEe----ceEEEEE
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY----EQFYLVN 887 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf----~~LtIIN 887 (1033)
|||+|+++..+..+++. ... + ..++++.+++ ..+.|+|
T Consensus 66 ailsr~~~~~~~~~~~~---------------~~~--~---------------------~~~~~~~~~~~~~~~~~~v~~ 107 (268)
T 1ako_A 66 ALLTKETPIAVRRGFPG---------------DDE--E---------------------AQRRIIMAEIPSLLGNVTVIN 107 (268)
T ss_dssp EEEESSCCSEEEESSTT---------------CCH--H---------------------HHTTEEEEEEEETTEEEEEEE
T ss_pred EEEEecCcceeeeCCCC---------------ccc--c---------------------cCCCEEEEEEEcCCCeEEEEE
Confidence 99999998776543320 000 0 2455666555 3699999
Q ss_pred EEcCCCcchh--hhHHHHHHHHHHHHHHHHhh-cCCCCEEEeccCCCcCCcccccccccc------CCCCCCChHHHHHH
Q psy12564 888 VYAPAAKEDL--SMLSVKLLWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYF 958 (1033)
Q Consensus 888 VYlPng~sd~--erLd~R~kFld~L~e~L~qL-~ag~PVII~GDFNaap~eiD~adpk~n------~g~sGft~eERa~L 958 (1033)
+|+|+..... .+...|..|++.|.+++.++ ..+.|+|||||||+.+.+.|......+ .+..++.+.++.++
T Consensus 108 ~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 187 (268)
T 1ako_A 108 GYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWM 187 (268)
T ss_dssp EECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHH
T ss_pred EEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHHHHHH
Confidence 9999876422 24556778888998888875 457899999999999888776432211 14567888888899
Q ss_pred HHHHhcCCeehhcccCCCC-CccccCCCCCC-CCCCCccceeEEEEcccccccceeEEEeCC----CCCCCccceEEEEE
Q psy12564 959 SNFLDLGFLDVHRHLYPNH-RIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGD----VEGSDHAPQILYLN 1032 (1033)
Q Consensus 959 ~eLLsaGLvDA~R~~~Pd~-g~YTw~S~r~n-r~~n~GsRIDyILVS~nl~~~V~sa~I~~~----~~gSDH~PViLdLd 1032 (1033)
..+.+.||.|+|+..+|.. +.||||+++.+ ++.+.++||||||+++.+...+..+.|... ..+|||+||+++|+
T Consensus 188 ~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~i~~~~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 188 DRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp HHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred HHHhcCCCEEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHHHHHhceechhhcCCCCCCCcccEEEEcc
Confidence 8888899999999998864 57999987654 333457899999999988766778887743 24799999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=3.5e-32 Score=267.43 Aligned_cols=227 Identities=23% Similarity=0.306 Sum_probs=166.0
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC-CCCCCceEeecCCCCCceE
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-CPEGYHAFWFPGTRQGYAG 810 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~-el~GY~syfs~s~kkGysG 810 (1033)
++.|||+||||+|++... +++.+.++|++++|||||||||+.....+.. ...||..++......+++|
T Consensus 5 ~~~lri~t~Nv~g~~~~~-----------~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~~l~~~~y~~~~~~~~~~~~~G 73 (238)
T 1vyb_A 5 NSHITILTLNINGLNSAI-----------KRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAG 73 (238)
T ss_dssp CCCEEEEEEECSCCCSHH-----------HHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCC
T ss_pred CCcceEEEEecccCCchh-----------hHHHHHHHHHHcCCCEEEEecccCCCCCchhHhhCCCCeEEEccCCCCCce
Confidence 467999999999987543 2468999999999999999999876443332 2468876443322335579
Q ss_pred EEEEEcCCc-ceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEe----ceEEE
Q psy12564 811 VAVLSKTKP-VRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY----EQFYL 885 (1033)
Q Consensus 811 VAILSR~PI-lkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf----~~LtI 885 (1033)
+|||+|.++ ..+.. .. . + .++|++.+++ ..+.+
T Consensus 74 vail~r~~~~~~~~~-~~------------------~--~---------------------~~~r~i~~~~~~~~~~~~v 111 (238)
T 1vyb_A 74 VAILVSDKTDFKPTK-IK------------------R--D---------------------KEGHYIMVKGSIQQEELTI 111 (238)
T ss_dssp EEEEECTTCCCEEEE-EE------------------E--C---------------------TTSSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCccccc-ee------------------E--c---------------------CCCcEEEEEEEeCCCcEEE
Confidence 999999973 32211 10 1 1 3677776655 46999
Q ss_pred EEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHH-hc
Q psy12564 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DL 964 (1033)
Q Consensus 886 INVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLL-sa 964 (1033)
+|+|+|+.... +|++.+.+.+.+. .+.|+|||||||+.+..+|... .++.+.++..|..++ +.
T Consensus 112 ~~~y~p~~~~~--------~~~~~l~~~l~~~-~~~~~Il~GDFN~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 175 (238)
T 1vyb_A 112 LNIYAPNTGAP--------RFIKQVLSDLQRD-LDSHTLIMGDFNTPLSTLDRST-------RQKVNKDTQELNSALHQA 175 (238)
T ss_dssp EEEECCSSSHH--------HHHHHHHHHTTTT-CCTTEEEEEECSSCSSGGGBTT-------CCCCCHHHHHHHHHHHHT
T ss_pred EEEecCCCCcH--------HHHHHHHHHHHhc-cCCCEEEEccCCCCCCccccCC-------CCCCcHHHHHHHHHHhhC
Confidence 99999987642 3455565665543 3689999999999887766532 244566777888777 56
Q ss_pred CCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEE
Q psy12564 965 GFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032 (1033)
Q Consensus 965 GLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLd 1032 (1033)
||.|+|+..+|.+..||||+++.. .++||||||+++++...+.++.+.. ..+|||+||+++|+
T Consensus 176 ~l~d~~~~~~~~~~~~T~~~~~~~----~~~rID~i~~s~~~~~~~~~~~v~~-~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 176 DLIDIYRTLHPKSTEYTFFSAPHH----TYSKIDHIVGSKALLSKCKRTEIIT-NYLSDHSAIKLELR 238 (238)
T ss_dssp TEEEHHHHHCTTCCCCSEEETTTT----EEECCEEEEEEGGGGGGEEEEEEEC-CSSSSSCEEEEEEC
T ss_pred CCEEhhHhhCCCCCceeEEcCCCC----cccceEEEEeCHHHHhhhhhceeec-CCCCCcccEEEEeC
Confidence 999999998887778999976542 3569999999999877788888885 45899999999874
No 10
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=2.4e-27 Score=239.11 Aligned_cols=224 Identities=14% Similarity=0.108 Sum_probs=144.4
Q ss_pred CCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCCCCCCceEeecCCCCCceE
Q psy12564 731 YPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAG 810 (1033)
Q Consensus 731 ~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~el~GY~syfs~s~kkGysG 810 (1033)
..+.|||+||||+|++.. .+.+.++|++++|||||||||+...........||..++......+++|
T Consensus 16 ~~~~lri~s~Nv~~~~~~-------------~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~~~~gy~~~~~~~~~~~~~G 82 (245)
T 1wdu_A 16 NGPPYRVLQANLQRKKLA-------------TAELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGTVK 82 (245)
T ss_dssp --CCEEEEEEECTTCHHH-------------HHHHHHHHHHHTCSEEEEESCCC------CCCSSCEEEECCCCTTCCCC
T ss_pred cCcceeeeeeeccccHHH-------------HHHHHHHHhhcCCCEEEEEcccccCCccccCCCcceEeccccccCCCCC
Confidence 346799999999988653 3679999999999999999998764333223468876554322345679
Q ss_pred EEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCc-EEEEEe--ceEEEEE
Q psy12564 811 VAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR-VMTVEY--EQFYLVN 887 (1033)
Q Consensus 811 VAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGR-iItVEf--~~LtIIN 887 (1033)
+|||++.+...+.. +. .. + ..+. .+.++. ..+.|+|
T Consensus 83 vaIl~~~~~~~~~~-~~-----------------~~--~---------------------~~~~~~~~i~~~~~~~~v~~ 121 (245)
T 1wdu_A 83 AAIAVFDHDLDVIQ-YP-----------------QL--T---------------------TNNIVVVGIRTRAWEITLVS 121 (245)
T ss_dssp EEEEECCSSCEEEE-CT-----------------TT--C---------------------CSSEEEEEEECSSCEEEEEE
T ss_pred eEEEEECCCcceEE-ec-----------------cc--c---------------------cCCEEEEEEEcCCCcEEEEE
Confidence 99999764333321 11 01 0 1221 222333 3799999
Q ss_pred EEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHH-hcCC
Q psy12564 888 VYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-DLGF 966 (1033)
Q Consensus 888 VYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLL-saGL 966 (1033)
+|+|++... ..|++.|..++..+ ...|+|||||||+.+..++.. ....+...|..++ ..||
T Consensus 122 vy~p~~~~~-------~~~~~~l~~~~~~~-~~~~~Ii~GDfN~~~~~~~~~----------~~~~~~~~l~~~~~~~~l 183 (245)
T 1wdu_A 122 YYFEPDKPI-------ESYLEQIKRVERKM-GPKRLIFGGDANAKSTWWGSK----------EDDARGDQLMGTLGELGL 183 (245)
T ss_dssp EECCTTSCS-------HHHHHHHHHHHHTT-CSSSEEEEEECCCCCGGGTCS----------SCCHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCH-------HHHHHHHHHHHHHh-CCCcEEEEeccccCcccCCCC----------CcCcchHHHHHHHHHCCc
Confidence 999987631 23555666666654 457999999999987543321 0123445555554 3465
Q ss_pred eehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 967 LDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 967 vDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
.. .++ +..||||+++.+ ...++||||||+++.+...+.++.|.....+|||+||+++|++
T Consensus 184 ~~----~~~-~~~~T~~~~~~~--~~~~~rID~i~~s~~~~~~v~~~~v~~~~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 184 HI----LNE-GDVPTFDTIRGG--KRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp EE----CCC-SCCCSEEC-------CCEECCEEEEECGGGBTTEEEEEECTTSSSSSBCCEEEEECC
T ss_pred EE----ecC-CCCCcEECCCCC--CCCCCEEEEEEeChHHHhhccceEEcCCCCCCCcccEEEEEEe
Confidence 43 333 346999987642 2347899999999988777888999876678999999999865
No 11
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.95 E-value=4e-28 Score=250.28 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=147.2
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCCCCCCceEeecCCCCCceEEE
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYAGVA 812 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~el~GY~syfs~s~kkGysGVA 812 (1033)
..|||+||||||+++.. +.+.++|++++|||||||||+. ..||+ |.. .+++|+|
T Consensus 6 ~~mki~s~Nvn~~r~~~-------------~~l~~~l~~~~~DIl~LQEt~~--------~~gy~--~~~---~~~~gva 59 (240)
T 2ei9_A 6 PRLRIGQINLGGAEDAT-------------RELPSIARDLGLDIVLVQEQYS--------MVGFL--AQC---GAHPKAG 59 (240)
T ss_dssp CEEEEEEEECTTCHHHH-------------HTHHHHHHHHTCSEEEEESCCT--------TSSSE--ECC---SSSCSEE
T ss_pred ccceEEEEecCccHHHH-------------HHHHHHHHHcCCCEEEeecceE--------cCCce--Eec---cCCCCEE
Confidence 45999999999998764 4599999999999999999973 24787 322 2467999
Q ss_pred EEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEeceEEEEEEEcCC
Q psy12564 813 VLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPA 892 (1033)
Q Consensus 813 ILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf~~LtIINVYlPn 892 (1033)
|+++.+...+.. +. .+ + ...++++.+++..++|+|+|+|+
T Consensus 60 il~~~~~~~~~~-~~-----------------~~--~--------------------~~~~~~i~i~~~~i~i~svY~P~ 99 (240)
T 2ei9_A 60 VYIRNRVLPCAV-LH-----------------HL--S--------------------STHITVVHIGGWDLYMVSAYFQY 99 (240)
T ss_dssp EEESSTTSCEEE-CG-----------------GG--C--------------------CSSEEEEEETTTTEEEEEEECCT
T ss_pred EEEecCCcceee-ec-----------------cc--C--------------------CCCEEEEEEeeccEEEEEEEcCC
Confidence 999985433321 10 01 0 03455666666789999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcCCeehhcc
Q psy12564 893 AKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972 (1033)
Q Consensus 893 g~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaGLvDA~R~ 972 (1033)
+... .++.+|++.|...+ .+.++|||||||+++..++ +..+. .++.+.+++...+.+ .+|.|.++.
T Consensus 100 ~~~~----~~~~~~l~~l~~~~----~~~~~Ii~GDfN~~~~~w~---~~~~~--~~~~~~~r~~~~~~l-~~~~d~~~l 165 (240)
T 2ei9_A 100 SDPI----DPYLHRLGNILDRL----RGARVVICADTNAHSPLWH---SLPRH--YVGRGQEVADRRAKM-EDFIGARRL 165 (240)
T ss_dssp TSCS----HHHHHHHHHHHHHT----TTSCEEEEEECCCCCGGGT---CCHHH--HSSSCHHHHHHHHHH-HHHHHHTTC
T ss_pred CCch----hHHHHHHHHHHHhc----CCCcEEEEEeccccccccc---CCCCC--CCCcchhhHHHHHHH-HHHHHhcCC
Confidence 8652 34566666664433 2479999999999875432 22111 134455555544444 378888874
Q ss_pred --cCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 973 --LYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 973 --~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
++|.+..||||+++. ++||||+|+|+.+.. ..+.+. ...+|||+||+++|+.
T Consensus 166 ~~~~~~~~~~T~~s~~~------~~rID~~l~s~~l~~--~~~~i~-~~~~SDH~Pv~~~l~~ 219 (240)
T 2ei9_A 166 VVHNADGHLPTFSTANG------ESYVDVTLSTRGVRV--SEWRVT-NESSSDHRLIVFGVGG 219 (240)
T ss_dssp EECCCTTCCCSEEETTE------EECCEEEEECTTCCE--EEEEEC-SCCSSSBCCEEEEEEC
T ss_pred EecCCCCCCceEeCCCC------ceEEEEEEecCcccc--CCeEEC-CCCCCCcccEEEEECC
Confidence 466556799998642 589999999998875 566666 3668999999999863
No 12
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.94 E-value=5.7e-26 Score=223.83 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=142.1
Q ss_pred ccCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCC--CCCCCceEeecC
Q psy12564 726 RRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--CPEGYHAFWFPG 803 (1033)
Q Consensus 726 ~~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~--el~GY~syfs~s 803 (1033)
..++..+++|||+||||+|+..... ..+.+.|.++|++++||||||||+.... +.. ...++..++..
T Consensus 5 ~~~~~~~~~l~v~s~Ni~g~~~~~~--------~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~~l~~~~~~~~~~~~- 73 (256)
T 4fva_A 5 TAEDLKGFEVSVMSWNIDGLDGRSL--------LTRMKAVAHIVKNVNPDILFLQEVVDRD--LAPIDKLQSLYKIYYS- 73 (256)
T ss_dssp ---CCTTCEEEEEEEECCTTCCTTH--------HHHHHHHHHHHHHHCCSEEEEEEECSTT--CHHHHGGGGTEEEEES-
T ss_pred CCCcCCCCEEEEEEEecCCCCCcCH--------HHHHHHHHHHHHHcCCCEEEEEecChhH--hHHHHHhcCCceEeec-
Confidence 3456677899999999998865431 1125689999999999999999996432 211 12333333332
Q ss_pred CCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEE--EEe-
Q psy12564 804 TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMT--VEY- 880 (1033)
Q Consensus 804 ~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiIt--VEf- 880 (1033)
...+..|+||+++.++........ . .+.. . .....+. +.+
T Consensus 74 ~~~~~~g~~il~~~~~~~~~~~~~-------~-------~~~~--~---------------------~~~~~~~~~~~~~ 116 (256)
T 4fva_A 74 NKGCQYYTAILVSKMFDVEKHDVI-------H-------FQNS--G---------------------MYRTLQILEGSIG 116 (256)
T ss_dssp STTSSSEEEEEEETTCEEEEEEEE-------E-------CTTC--S---------------------SCCEEEEEEEEET
T ss_pred CCCCCcceEEEEeecccceecccc-------c-------CCCC--c---------------------ccceeEEEEEEeC
Confidence 345567999999988654433211 0 0000 0 1112222 333
Q ss_pred -ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh---cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHH
Q psy12564 881 -EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL---NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERN 956 (1033)
Q Consensus 881 -~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL---~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa 956 (1033)
..+.++|+|+++...... .+..++..+.+.+..+ ..+.|+|+|||||+.+.....
T Consensus 117 g~~~~v~~~Hl~~~~~~~~---~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~------------------ 175 (256)
T 4fva_A 117 GLKVFLLNTHLESTREHRP---QRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR------------------ 175 (256)
T ss_dssp TEEEEEEEEECCCSGGGHH---HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCC------------------
T ss_pred CeEEEEEEecCCCCCcchH---HHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhh------------------
Confidence 368999999998764321 2233334444333332 567899999999986533211
Q ss_pred HHHHHHhcCCeehhcccCCCC-CccccCCCCCC---CCCCCccceeEEEEcccccccceeEEEeCC-------CCCCCcc
Q psy12564 957 YFSNFLDLGFLDVHRHLYPNH-RIYTYWPYYDR---PSKMKGWRLDYFLISKQLKSHLSDLEIHGD-------VEGSDHA 1025 (1033)
Q Consensus 957 ~L~eLLsaGLvDA~R~~~Pd~-g~YTw~S~r~n---r~~n~GsRIDyILVS~nl~~~V~sa~I~~~-------~~gSDH~ 1025 (1033)
...+|.|+|+...+.. .+|||+..... .....+.||||||+++.+. +..+.+... ..+|||+
T Consensus 176 -----~~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~~--~~~~~~~~~~~~~~~~~~~SDH~ 248 (256)
T 4fva_A 176 -----VPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHW 248 (256)
T ss_dssp -----CCTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESSCC--EEEEEEECCSCCTTTCSCSCSSC
T ss_pred -----hhcchhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcCCce--eeEEEEEeeEecCCCCCCcCccc
Confidence 1137899998876543 67999766543 2233457999999998765 445555421 1359999
Q ss_pred ceEEEEE
Q psy12564 1026 PQILYLN 1032 (1033)
Q Consensus 1026 PViLdLd 1032 (1033)
||+++|.
T Consensus 249 pv~a~Fs 255 (256)
T 4fva_A 249 AINATFF 255 (256)
T ss_dssp EEEEEEE
T ss_pred CEEEEEc
Confidence 9999986
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.94 E-value=2.6e-26 Score=250.31 Aligned_cols=232 Identities=15% Similarity=0.163 Sum_probs=148.8
Q ss_pred cccCCCCCCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCC-CCCCCCCCceEeecC
Q psy12564 725 KRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK-LPECPEGYHAFWFPG 803 (1033)
Q Consensus 725 ~~~~e~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~-L~~el~GY~syfs~s 803 (1033)
.+.++..+..|||+||||+|+..... -.+.+.|.++|++++||||||||+...... +.....+|..++..
T Consensus 110 ~~~~~~~~~~lkVlSWNI~Gl~~~~~--------~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~~~y~~~~~~- 180 (362)
T 4gew_A 110 MTAEDLKGFEVSVMSWNIDGLDGRSL--------LTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQSLYKIYYSN- 180 (362)
T ss_dssp ---CTTTTCEEEEEEEECCTTCCTTH--------HHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGGGTEEEEESS-
T ss_pred CCCCCCCCCeEEEEEEEeCCCCCcCH--------HHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhcCCceEEeCC-
Confidence 34556677899999999999965431 112568999999999999999998543211 11124556655443
Q ss_pred CCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCC-cEEE--EEe
Q psy12564 804 TRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDG-RVMT--VEY 880 (1033)
Q Consensus 804 ~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seG-RiIt--VEf 880 (1033)
..+++|+|||+|+++........ . .+.. ..+ .++. +.+
T Consensus 181 -~~~~~G~aIlsk~~i~~~~~~~~-------~-------~~~~------------------------~~~r~~l~~~i~~ 221 (362)
T 4gew_A 181 -KGCQYYTAILVSKMFDVEKHDVI-------H-------FQNS------------------------GMYRTLQILEGSI 221 (362)
T ss_dssp -TTSSSEEEEEEETTEEEEEEEEE-------E-------CTTC------------------------SSCCEEEEEEEEE
T ss_pred -CCCCceEEEEEeccCcccccccc-------C-------CCCC------------------------cccceEEEEEEEE
Confidence 45678999999998654433221 0 0000 112 2222 333
Q ss_pred --ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh---cCCCCEEEeccCCCcCCccccccccccCCCCCCChHHH
Q psy12564 881 --EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL---NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQER 955 (1033)
Q Consensus 881 --~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL---~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eER 955 (1033)
..+.++|+|+++..... ..|..++..+...+..+ ..+.|+|+|||||..+...+.
T Consensus 222 ~g~~l~v~ntHL~s~~~~~---~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~----------------- 281 (362)
T 4gew_A 222 GGLKVFLLNTHLESTREHR---PQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR----------------- 281 (362)
T ss_dssp TTEEEEEEEEECCCSGGGH---HHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCC-----------------
T ss_pred CCEEEEEEEecCCccccch---hHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccch-----------------
Confidence 36999999999876432 23445555555555443 457899999999987643211
Q ss_pred HHHHHHHhcCCeehhcccCCCC-CccccCCCCCC---CCCCCccceeEEEEcccccccceeEEEeCC-------CCCCCc
Q psy12564 956 NYFSNFLDLGFLDVHRHLYPNH-RIYTYWPYYDR---PSKMKGWRLDYFLISKQLKSHLSDLEIHGD-------VEGSDH 1024 (1033)
Q Consensus 956 a~L~eLLsaGLvDA~R~~~Pd~-g~YTw~S~r~n---r~~n~GsRIDyILVS~nl~~~V~sa~I~~~-------~~gSDH 1024 (1033)
...||.|+|+.+++.. .+||||.+... .....+.||||||+++.+. +..+.+... ..+|||
T Consensus 282 ------~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ri~~~~~~pSDH 353 (362)
T 4gew_A 282 ------VPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDH 353 (362)
T ss_dssp ------CCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCSCCTTTSSCSCSS
T ss_pred ------hcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeeeecCCCCCCCCcc
Confidence 1247999999876543 68999877654 2233457999999998865 445555421 136999
Q ss_pred cceEEEEE
Q psy12564 1025 APQILYLN 1032 (1033)
Q Consensus 1025 ~PViLdLd 1032 (1033)
+||+++|.
T Consensus 354 ~pV~A~FS 361 (362)
T 4gew_A 354 WAINATFF 361 (362)
T ss_dssp CEEEEEEE
T ss_pred cCEEEEEc
Confidence 99999986
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.94 E-value=1.5e-25 Score=224.46 Aligned_cols=232 Identities=16% Similarity=0.122 Sum_probs=147.7
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCC---------------C-C--CCCC
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK---------------L-P--ECPE 794 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~---------------L-~--~el~ 794 (1033)
..|||+||||+++..... ..+...+.++|++++||||||||+...... + . ....
T Consensus 2 ~~l~v~t~Ni~~~~~~~~--------~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~ 73 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQ--------MEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYT 73 (266)
T ss_dssp -CEEEEEEECCTTCSTTH--------HHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTC
T ss_pred CceEEEEEecccccCcch--------hHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhC
Confidence 579999999987754321 123578999999999999999999743210 0 0 0122
Q ss_pred --CCceEeec---CCCCCceEEEEEEcCCcceEee-cccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccC
Q psy12564 795 --GYHAFWFP---GTRQGYAGVAVLSKTKPVRVTH-GFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868 (1033)
Q Consensus 795 --GY~syfs~---s~kkGysGVAILSR~PIlkVe~-gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~ 868 (1033)
+|..++.. ....+..|+|||+|+++..... .++ . .+.. +
T Consensus 74 ~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~~~~~~~---------~-----~~~~----------~----------- 118 (266)
T 3teb_A 74 DTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAEDEFYCT---------F-----AQSV----------R----------- 118 (266)
T ss_dssp CSCCEEEEEEEEECSTTEEEEEEEEESSCCSEEEEEECS---------S-----CCCT----------T-----------
T ss_pred CCCeEEEEeccccCccccCCeEEEEECceecCceeEEeC---------C-----CCCC----------C-----------
Confidence 47665432 2344557999999999876543 121 0 0000 0
Q ss_pred CCCCCcEEEEEe----ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCcccccccccc
Q psy12564 869 GIDDGRVMTVEY----EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN 944 (1033)
Q Consensus 869 ~~seGRiItVEf----~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n 944 (1033)
+....+++.+++ ..+.++|+|++....... .|..++..|.+++. ...|+|||||||+.+..
T Consensus 119 ~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~---~r~~q~~~l~~~~~---~~~~~il~GDfN~~~~~--------- 183 (266)
T 3teb_A 119 TISARRIVSITINYEGQDIEFYSCHMNLPNCETE---DMGKNIQTILNRTQ---NSNLKILMGDFNTDAIG--------- 183 (266)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTC---CHHHHHHHHHTSSC---SCCEEEEEEECCCCTTT---------
T ss_pred CcccceEEEEEEEeCCeEEEEEEecCCCccCChH---HHHHHHHHHHHHHh---cCCcEEEEeECCCCCCC---------
Confidence 001223334444 369999999988643211 23445555554443 37899999999997521
Q ss_pred CCCCCCChHHHHHHHHHHhcCCeehhcccCCCCCccccCCCCCCC-CCCCccceeEEEEcccccccceeEEEeCC----C
Q psy12564 945 LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGD----V 1019 (1033)
Q Consensus 945 ~g~sGft~eERa~L~eLLsaGLvDA~R~~~Pd~g~YTw~S~r~nr-~~n~GsRIDyILVS~nl~~~V~sa~I~~~----~ 1019 (1033)
....+..++..||.|+|+...+...++||......+ ....+.||||||+++++. +..+.+... .
T Consensus 184 ---------~~~~~~~l~~~~l~d~~~~~~~~~~~~t~~~~~~~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~~~~ 252 (266)
T 3teb_A 184 ---------NVAAYENILSQGLFDTYVMAEKKDDGITVDKSIHGWDNDKAKKRLDYIFSNKELK--VKESKVIFNNKNKE 252 (266)
T ss_dssp ---------CHHHHHHHHTTTCEEHHHHCSEECCCCCEECC------CTTEECCEEEEESSCCC--EEEEEEESSSSSSC
T ss_pred ---------CCcHHHhhccccccchHHhhccccCCccccCccCCcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCCCCC
Confidence 023566677779999999887766678874332222 223567999999999876 677887753 3
Q ss_pred CCCCccceEEEEEC
Q psy12564 1020 EGSDHAPQILYLNL 1033 (1033)
Q Consensus 1020 ~gSDH~PViLdLdL 1033 (1033)
..|||+||+++|++
T Consensus 253 ~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 253 IVSDHFGIEVKIEF 266 (266)
T ss_dssp CCSSSCEEEEEECC
T ss_pred CcCCccCEEEEEEC
Confidence 46999999999975
No 15
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.92 E-value=1.3e-24 Score=209.05 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=134.8
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCCCCCCC--CCCCceEeecCCCCCceE
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPEC--PEGYHAFWFPGTRQGYAG 810 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see~L~~e--l~GY~syfs~s~kkGysG 810 (1033)
.+|||+||||+|+..... ..+.+.|.++|++++||||||||+.... +... ..++..++.. ...+.+|
T Consensus 2 ~~l~v~t~Ni~g~~~~~~--------~~r~~~i~~~i~~~~pDIi~LQEv~~~~--~~~l~~~~~~~~~~~~-~~~~~~~ 70 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNL--------ADRARGLCSYLALYTPDVVFLQELIPAY--VQYLKKRAVSYLFFEG-SDDGYFT 70 (250)
T ss_dssp CCEEEEEEECCTTCCTTH--------HHHHHHHHHHHHHHCCSEEEEEEECHHH--HHHHHHHCTTEEEEES-CSSSSEE
T ss_pred CeEEEEEEEeCCCCCcCH--------HHHHHHHHHHHHHcCCCEEEEEeCCHHH--HHHHHHhccCceeecc-cccccCc
Confidence 479999999998865430 1125689999999999999999986321 1111 2333333332 2344567
Q ss_pred EEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCc-EEEEE--e--ceEEE
Q psy12564 811 VAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR-VMTVE--Y--EQFYL 885 (1033)
Q Consensus 811 VAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGR-iItVE--f--~~LtI 885 (1033)
.+++++.+..-...... . .+. . ..++ ++.+. . ..+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~-------~-------~~~---~---------------------~~~~~~~~~~~~~~~~~~~v 112 (250)
T 4f1h_A 71 GIMLRKSRVKFLESEII-------C-------FPT---T---------------------QMMRNLLIAQVTFSGQKLYL 112 (250)
T ss_dssp EEEEETTTCEEEEEEEE-------E-------CTT---C---------------------SSCCEEEEEEEEETTEEEEE
T ss_pred eeEEeeccccceecccc-------c-------ccC---c---------------------cccceEEEEEEecCCcEEEE
Confidence 77776655433222110 0 000 0 1222 22232 2 36899
Q ss_pred EEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhcC
Q psy12564 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLG 965 (1033)
Q Consensus 886 INVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsaG 965 (1033)
+++|++...... ..+.+++..+.+++.+.....|+|||||||+.+...+... +...+
T Consensus 113 ~~~hl~~~~~~~---~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~--------------------~~~~~ 169 (250)
T 4f1h_A 113 MTSHLESCKNQS---QERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVG--------------------GLPAG 169 (250)
T ss_dssp EECBCCCSGGGH---HHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTTT--------------------SSCTT
T ss_pred eccccccccccH---HHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhhh--------------------hcccc
Confidence 999998865432 3455667777777776555679999999998654322211 12246
Q ss_pred CeehhcccCCCC-CccccCCCCCC---CCCCCccceeEEEEcccccccc---eeEEEeC------CCCCCCccceEEEEE
Q psy12564 966 FLDVHRHLYPNH-RIYTYWPYYDR---PSKMKGWRLDYFLISKQLKSHL---SDLEIHG------DVEGSDHAPQILYLN 1032 (1033)
Q Consensus 966 LvDA~R~~~Pd~-g~YTw~S~r~n---r~~n~GsRIDyILVS~nl~~~V---~sa~I~~------~~~gSDH~PViLdLd 1032 (1033)
+.|+|+.+++.. ..++|+..... .....+.||||||+++...... ....+.. ...+|||+||+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 170 VCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp EEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred chHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEecccccCCCCCCCcccCEEEEEe
Confidence 778877766544 44555433322 2334567999999998654322 2223322 123599999999986
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.92 E-value=1.2e-24 Score=213.77 Aligned_cols=230 Identities=18% Similarity=0.196 Sum_probs=135.7
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCC-CCCCCCCCCceEeecCCCCCceE
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLE-KLPECPEGYHAFWFPGTRQGYAG 810 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see-~L~~el~GY~syfs~s~kkGysG 810 (1033)
..+|||+||||+|+..... ..+.+.|.++|++++||||||||+..... .+.....+|..+.. ...++ |
T Consensus 7 ~~~l~v~swNi~g~~~~~~--------~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~~~~~~~~~--~~~~~-~ 75 (256)
T 4gz1_A 7 SSTISFITWNIDGLDGCNL--------PERARGVCSCLALYSPDVVFLQEVIPPYCAYLKKRAASYTIITG--NEEGY-F 75 (256)
T ss_dssp GGEEEEEEEECCTTCCTTH--------HHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHHHCTTEEEEES--CSSSS-E
T ss_pred CCcEEEEEEEcCCCcCcCH--------HHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHhhccccceeec--cccCC-c
Confidence 4689999999999865430 11256899999999999999999853210 01111233333322 23343 5
Q ss_pred EEEEEcCCcceEe-ecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCc-EEEE--Ee--ceEE
Q psy12564 811 VAVLSKTKPVRVT-HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGR-VMTV--EY--EQFY 884 (1033)
Q Consensus 811 VAILSR~PIlkVe-~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGR-iItV--Ef--~~Lt 884 (1033)
.+++++.++.... .... . .+.. ..++ ++.+ .. ..+.
T Consensus 76 ~~~l~~~~~~~~~~~~~~-------~-------~~~~------------------------~~~~~~~~~~~~~~~~~~~ 117 (256)
T 4gz1_A 76 TAILLKKGRVKFKSQEII-------P-------FPNT------------------------KMMRNLLCVNVSLGGNEFC 117 (256)
T ss_dssp EEEEEETTTEEEEEEEEE-------E-------CTTC------------------------SSCCEEEEEEEEETTEEEE
T ss_pred eEEEEEeccccceecccc-------c-------CCcc------------------------cccceEEEEEEEeCCEEEE
Confidence 5566655544332 2111 0 0000 1122 2222 23 3689
Q ss_pred EEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHhc
Q psy12564 885 LVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL 964 (1033)
Q Consensus 885 IINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLsa 964 (1033)
++|+|+++..... ..+.+++..+.+.+.+...+.|+|+|||||+.+...+ ...+...
T Consensus 118 v~~~Hl~~~~~~~---~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~--------------------~~~~~~~ 174 (256)
T 4gz1_A 118 LMTSHLESTREHS---AERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVI--------------------KCGGLPD 174 (256)
T ss_dssp EEECBCCCSGGGH---HHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHH--------------------HHTCSCT
T ss_pred EEeecccccccch---hhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhh--------------------hhhhccc
Confidence 9999998875432 2345566777777776566789999999998643211 1112234
Q ss_pred CCeehhcccCCCC-CccccCCCCCC---CCCCCccceeEEEEcccccc-cceeEEEeC------CCCCCCccceEEEEEC
Q psy12564 965 GFLDVHRHLYPNH-RIYTYWPYYDR---PSKMKGWRLDYFLISKQLKS-HLSDLEIHG------DVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 965 GLvDA~R~~~Pd~-g~YTw~S~r~n---r~~n~GsRIDyILVS~nl~~-~V~sa~I~~------~~~gSDH~PViLdLdL 1033 (1033)
++.|+|+...... ..++|+..... +....+.||||||+++.... ....+.+.. ...+|||+||+++|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 175 NVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp TEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred hhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 7888888775543 45666544332 33456789999999876432 223344432 1236999999999975
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.91 E-value=5.2e-24 Score=214.31 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=145.8
Q ss_pred EEEEEecccCcccccccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCCC-CCCCCCCCCceEeecCC-CCCceEE
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPLE-KLPECPEGYHAFWFPGT-RQGYAGV 811 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~see-~L~~el~GY~syfs~s~-kkGysGV 811 (1033)
|||+||||++...... ...|.. ...+.++|++++||||||||+..... .+.. ..||..+..... ..+..|+
T Consensus 1 lrv~t~Ni~~~~~~~~-----~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~-~l~y~~~~~~~~~~~~~~g~ 74 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQ-----DWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA-YTTFTCLSAEREGDGQGEGL 74 (257)
T ss_dssp CEEEEEECCCCCGGGG-----GGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHH-HSSSEEEEEESSSSSCSCEE
T ss_pred CEEEEEEeccCCCCcc-----ccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHh-cCCCcEEEecccCCCCCceE
Confidence 6999999998875431 123443 56899999999999999999974311 1111 248976655432 2456799
Q ss_pred EEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEE-EEe------ceEE
Q psy12564 812 AVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMT-VEY------EQFY 884 (1033)
Q Consensus 812 AILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiIt-VEf------~~Lt 884 (1033)
|||+|.....+...-. -++...+ ..+..+++ ....|.+. +.+ ..+.
T Consensus 75 ail~r~~~~~~~~~~~----~~l~~~~---~~~~~~~~--------------------~~~~r~~~~~~~~~~~~g~~~~ 127 (257)
T 3l1w_A 75 AILYNEQKVQAIDTGY----FWLSETP---QQPSIHPE--------------------AGCPRIALWGLFKETTQNTPFL 127 (257)
T ss_dssp EEEECTTTEEEEEEEE----EESSSST---TSSCCCTT--------------------CSSCCEEEEEEEEETTCSSCEE
T ss_pred EEEEEcceEEEEecCe----EECcCCC---Cccccccc--------------------ccccceeEEEEEEEcCCCCEEE
Confidence 9999965333322100 0010000 00000000 03445432 333 2699
Q ss_pred EEEEEcCCCcchhhhHHHHHHHHHHHHHHHH-hhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHHHHHHHHh
Q psy12564 885 LVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK-SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD 963 (1033)
Q Consensus 885 IINVYlPng~sd~erLd~R~kFld~L~e~L~-qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa~L~eLLs 963 (1033)
++|+|++.... ..|..++..|.+++. .+..+ |+|||||||+.+.. ..+. ++.
T Consensus 128 v~~~Hl~~~~~-----~~r~~q~~~l~~~i~~~~~~~-pvil~GDfN~~~~~--------------------~~~~-~l~ 180 (257)
T 3l1w_A 128 VINVHLDHISA-----HARLAGMTVILEELHDKIAQY-PTLLMGDFNAESGE--------------------EVHQ-LVQ 180 (257)
T ss_dssp EEEEECCSSCH-----HHHHHHHHHHHHHTHHHHHHS-CEEEEEECCCCTTS--------------------HHHH-HHT
T ss_pred EEEeCCCCCCH-----HHHHHHHHHHHHHHHHHcCCC-CEEEEeeCCCCCCc--------------------HHHH-Hhh
Confidence 99999987642 245677778888777 34334 99999999986531 1222 344
Q ss_pred cCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCC----CCCCccceEEEEEC
Q psy12564 964 LGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDV----EGSDHAPQILYLNL 1033 (1033)
Q Consensus 964 aGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~----~gSDH~PViLdLdL 1033 (1033)
.||.|+|+...+.+..+||.......+.+.+.||||||+ +++. +..+.+.... .+|||+||+++|.+
T Consensus 181 ~~l~d~~~~~~~~~~~~t~~~~~~~~~~~~~~riD~i~~-~~~~--~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 181 KKFQDSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYV-KGWQ--VQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp TTCEEGGGTSEEESCSCCBCTTCTTCCGGGCBCCEEEEE-ESEE--EEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred hhccchhhhhcccCCCCcccCCcccCCCCCCCceeEEEE-CCcE--EEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 589999987765455678765432112234579999999 6654 6677776542 47999999999874
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.91 E-value=1.5e-23 Score=212.67 Aligned_cols=236 Identities=16% Similarity=0.202 Sum_probs=148.4
Q ss_pred CeEEEEEecccCcccccccccchhhhhh-hHHHHHHHHHhcCCcEEEEeccccCCC-CCCCCCCCCceEeecCC--CCCc
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFL-QQKDGFSFMRQHDLNVFCIQEIRCPLE-KLPECPEGYHAFWFPGT--RQGY 808 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~-krd~Iid~Lre~dPDVIcLQETk~see-~L~~el~GY~syfs~s~--kkGy 808 (1033)
++|||+||||++...... ...|. +...+.++|++.+||||||||+..... .+...+.||..+..... ..+.
T Consensus 2 ~~l~v~t~Ni~~~~~~~~-----~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~~~~~g 76 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQDS-----LNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAG 76 (267)
T ss_dssp EEEEEEEEECCCCCGGGG-----GGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHCTTEEEECCCTTTSSSSS
T ss_pred CcEEEEEEEeccCCCCcc-----ccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhccCCcEEEecCCCCCcCC
Confidence 479999999998865321 11232 257899999999999999999974311 11111478876654422 1233
Q ss_pred eEEEEEEcC---CcceEeec-ccccccceeeccccCCCCCC-CCCCCCCCCCCCccchhhccccCCCCCCcEE-EEEe--
Q psy12564 809 AGVAVLSKT---KPVRVTHG-FSMKVGGVVHTHGFNRGSNE-HGSDMESGPSHPELTTIQYADASGIDDGRVM-TVEY-- 880 (1033)
Q Consensus 809 sGVAILSR~---PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe-~~~DI~~~~~~p~L~~l~~~d~~~~seGRiI-tVEf-- 880 (1033)
.|+|||+|. ++...... ++ ..+ ..+. .+|+ ....|.+ .+.+
T Consensus 77 ~~~ail~~~s~~~~~~~~~~~l~--------~~~---~~~~~~~~~--------------------~~~~R~~~~~~~~~ 125 (267)
T 3g6s_A 77 EYAPLFYRKDKYEVLDSNTFWLA--------ENP---DSVGMMGWD--------------------AVCVRIATWAKFKD 125 (267)
T ss_dssp CBCCEEEETTTEEEEEEEEEESS--------SCT---TSTTCCCTT--------------------CSSCCEEEEEEEEE
T ss_pred ceeEEEEEccceEEEecccEecC--------CCC---Ccccccccc--------------------ccCcceEEEEEEEE
Confidence 459999554 43332211 11 000 0000 0001 0234533 2333
Q ss_pred ----ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCCEEEeccCCCcCCccccccccccCCCCCCChHHHH
Q psy12564 881 ----EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERN 956 (1033)
Q Consensus 881 ----~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eERa 956 (1033)
..+.++|+|++.... ..|..+++.|.+++.++..+.|+|||||||+.+.. .
T Consensus 126 ~~~~~~~~v~~~Hl~~~~~-----~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~--------------------~ 180 (267)
T 3g6s_A 126 KATGKIFMAVNTHFDHVGE-----EARRQSALLIIRKIKEIVGERPAVVTGDFNVTDAS--------------------D 180 (267)
T ss_dssp TTTCCEEEEEEEECCSSCH-----HHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTS--------------------H
T ss_pred cCCCCEEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCC--------------------H
Confidence 269999999987642 24566777888888776557899999999986532 2
Q ss_pred HHHHHHhcC--CeehhcccCC-CCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCC---CCCCccceEEE
Q psy12564 957 YFSNFLDLG--FLDVHRHLYP-NHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDV---EGSDHAPQILY 1030 (1033)
Q Consensus 957 ~L~eLLsaG--LvDA~R~~~P-d~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~---~gSDH~PViLd 1030 (1033)
.+..+...| |.|+|+...+ .+..+||...... ....+.||||||+++++. +..+.+.... ..|||+||+++
T Consensus 181 ~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~-~~~~~~riD~I~~s~~~~--~~~~~v~~~~~~~~~SDH~PV~a~ 257 (267)
T 3g6s_A 181 AYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI-PAEDCEKIDFIFVTPQVL--VKSCEIPAEVPEALLSDHNPQLAD 257 (267)
T ss_dssp HHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS-CGGGCCCCEEEEECTTSE--EEEEEECCCCSSSCCCSBCCEEEE
T ss_pred HHHHhhcCCcchhhhHhhhccccCCCCCEeCCCCC-CCCCCCcEeEEEeCCCce--EEEEEEecCCCCCCCCCcccEEEE
Confidence 345555555 9999987652 2246788654331 123457999999999865 6777877654 46999999999
Q ss_pred EE
Q psy12564 1031 LN 1032 (1033)
Q Consensus 1031 Ld 1032 (1033)
+.
T Consensus 258 ~~ 259 (267)
T 3g6s_A 258 LE 259 (267)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 19
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=5e-22 Score=207.05 Aligned_cols=238 Identities=18% Similarity=0.204 Sum_probs=144.6
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCC-CCCCCCCCCCceEeecCC--CCC
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPL-EKLPECPEGYHAFWFPGT--RQG 807 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~se-e~L~~el~GY~syfs~s~--kkG 807 (1033)
+.+|||+||||+...... +.....|.. ...|.++|++.+||||||||+.... ..+...+.+|..+..... ...
T Consensus 4 ~~~lrV~t~Ni~~~~~~~---~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~~y~~~~~~~~~g~~~ 80 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSD---SARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALPGYDYIGVGRDDGKDK 80 (298)
T ss_dssp CEEEEEEEEECCCCCHHH---HHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHSTTEEEECCCTTTSSSS
T ss_pred CCcEEEEEEEeccCCCCC---cccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 467999999997654322 001123433 4789999999999999999997421 111112467765544322 122
Q ss_pred ceEEEEE---EcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEE-EEEe--
Q psy12564 808 YAGVAVL---SKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVM-TVEY-- 880 (1033)
Q Consensus 808 ysGVAIL---SR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiI-tVEf-- 880 (1033)
..|+||| +|+++...... ++ ..+ ..+..+|+ ....|.+ .+.+
T Consensus 81 g~~~aily~~sr~~i~~~~~~~l~--------~~p---~~~~~~~~--------------------~~~~R~~~~~~~~~ 129 (298)
T 3mpr_A 81 GEHSAIFYRTDKFDIVEKGDFWLS--------ETP---DVPSKGWD--------------------AVLPRICSWGHFKC 129 (298)
T ss_dssp SCBCCEEEETTTEEEEEEEEEESS--------SST---TSSCCCTT--------------------CSSCCEEEEEEEEE
T ss_pred CceeEEEEecCceEEEeccEEEcc--------CCC---CccCcccc--------------------cccCceeEEEEEEE
Confidence 3459999 55555443321 11 000 00001111 0234433 2333
Q ss_pred ----ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhc--CCCCEEEeccCCCcCCccccccccccCCCCCCChHH
Q psy12564 881 ----EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN--EIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE 954 (1033)
Q Consensus 881 ----~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~--ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~eE 954 (1033)
..+.++|+|+++... ..|..++..|.+++.++. .+.|+|||||||+.+..
T Consensus 130 ~~~g~~~~v~~~Hl~~~~~-----~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~------------------- 185 (298)
T 3mpr_A 130 KDTGFEFLFFNLHMDHIGK-----KARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH------------------- 185 (298)
T ss_dssp TTTCCEEEEEEEECCSSCH-----HHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS-------------------
T ss_pred cCCCCEEEEEEecCCCCCH-----HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------------------
Confidence 269999999986442 345667788888888764 57899999999987531
Q ss_pred HHHHHHHHhcC-CeehhcccCC-CCCccccCCCCCCCCCCCccceeEEEEcccccccceeEEEeCCC-------------
Q psy12564 955 RNYFSNFLDLG-FLDVHRHLYP-NHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDV------------- 1019 (1033)
Q Consensus 955 Ra~L~eLLsaG-LvDA~R~~~P-d~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~~V~sa~I~~~~------------- 1019 (1033)
..+..|...| |.|+|..... .+..+||...... ...+.||||||+++++. +..+.+....
T Consensus 186 -~~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~~~~~--~~~~~rID~Il~s~~~~--v~~~~v~~~~~~~~~~~~~~~~~ 260 (298)
T 3mpr_A 186 -QSYDAFVSKGVLCDSYEKCDYRYALNGTFNNFDPN--SFTESRIDHIFVSPSFH--VKRYGVLTDTYRSVRENSKKEDV 260 (298)
T ss_dssp -HHHHHHHTTSSSEEHHHHCSEEECSSCSBCTTCTT--CCCSCCCEEEEECTTSE--EEEEEECCCCEEEECC-------
T ss_pred -HHHHHHhcCCcchhhHhhhcccCCCCCCccCCCCC--CCCCceEEEEEeCCCee--EEEEEEecCccccCCCcccccCc
Confidence 2345556555 9999986642 1235677554321 12457999999998865 5566665321
Q ss_pred ---------------CCCCccceEEEEE
Q psy12564 1020 ---------------EGSDHAPQILYLN 1032 (1033)
Q Consensus 1020 ---------------~gSDH~PViLdLd 1032 (1033)
..|||+||++.|.
T Consensus 261 ~~~~~~~~~~~~~~~~~SDH~PV~v~~~ 288 (298)
T 3mpr_A 261 RDCPEEITIKAYEARTPSDHFPVKVELV 288 (298)
T ss_dssp ---------CCEEEECSSSBCCEEEEEE
T ss_pred ccchhhhccChhhcccCCCCCcEEEEEe
Confidence 3599999999985
No 20
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.88 E-value=2.3e-21 Score=199.41 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=136.2
Q ss_pred CCCCeEEEEEecccCcccccccccchhhhh---hhHHHHHHHHHhcCCcEEEEeccccCCC----------CCCCC----
Q psy12564 730 QYPWNFKIGSWNVNGIRAWSQVNKLFTSIF---LQQKDGFSFMRQHDLNVFCIQEIRCPLE----------KLPEC---- 792 (1033)
Q Consensus 730 ~~s~sLRIvSWNVnGLra~~k~~~S~~~~w---~krd~Iid~Lre~dPDVIcLQETk~see----------~L~~e---- 792 (1033)
..+..|||+||||++++.... ..| .+.+.+...+...+||||||||+..... .++..
T Consensus 6 ~~~~~lrv~t~Ni~~~~~~~~------~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~ 79 (301)
T 1zwx_A 6 EYPGNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVI 79 (301)
T ss_dssp -CCCSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCT
T ss_pred cCCCceEEEEEECccCCcccc------CCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCcccccc
Confidence 345689999999998743210 112 1245566667889999999999974320 01100
Q ss_pred ---CCCCceEeec--CCCCCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccc
Q psy12564 793 ---PEGYHAFWFP--GTRQGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYAD 866 (1033)
Q Consensus 793 ---l~GY~syfs~--s~kkGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d 866 (1033)
..||+..+.. ....+..|+|||||+|+...... ++. ..+++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~G~ailSr~pi~~~~~~~~~~----------------~~~~~----------------- 126 (301)
T 1zwx_A 80 GRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR----------------GGGAD----------------- 126 (301)
T ss_dssp TSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECSC----------------CCGGG-----------------
T ss_pred CCccccccccccccccccccCCCEEEEecCCcccceEEEecC----------------CCCcc-----------------
Confidence 0133322211 11235579999999998765431 210 00001
Q ss_pred cCCCCCCc-EEEEEe----ceEEEEEEEcCCCcch---hhhHHHHHHHHHHHHHHHHhh--cCCCCEEEeccCCCcCCcc
Q psy12564 867 ASGIDDGR-VMTVEY----EQFYLVNVYAPAAKED---LSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHNHI 936 (1033)
Q Consensus 867 ~~~~seGR-iItVEf----~~LtIINVYlPng~sd---~erLd~R~kFld~L~e~L~qL--~ag~PVII~GDFNaap~ei 936 (1033)
....| ++.+++ ..+.|+|+|+++.... ......|..+++.|.+++.+. ..+.|+|||||||+.+..
T Consensus 127 ---~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~- 202 (301)
T 1zwx_A 127 ---RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT- 202 (301)
T ss_dssp ---GGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS-
T ss_pred ---cccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc-
Confidence 01223 333444 3699999999886431 123456778888888888874 346799999999997642
Q ss_pred ccccccccCCCCCCChHHHHHHHHHHh-cCCe--ehhcccCCCCCccccCCCCCC-----CCCCCccceeEEEEcccccc
Q psy12564 937 DVALPLTNLGKSGFTIQERNYFSNFLD-LGFL--DVHRHLYPNHRIYTYWPYYDR-----PSKMKGWRLDYFLISKQLKS 1008 (1033)
Q Consensus 937 D~adpk~n~g~sGft~eERa~L~eLLs-aGLv--DA~R~~~Pd~g~YTw~S~r~n-----r~~n~GsRIDyILVS~nl~~ 1008 (1033)
..+..|+. .++. |+|+ +..+||...... ++...+.||||||+++....
T Consensus 203 -------------------~~~~~l~~~~~~~~~d~~~-----g~~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~~~ 258 (301)
T 1zwx_A 203 -------------------DEYHDMLKLLNVSSPANFN-----GQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHAR 258 (301)
T ss_dssp -------------------HHHHHHHHHHTBCCCTTCC-----TTSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCC
T ss_pred -------------------HHHHHHHHHcCCCCCcccc-----CCCceECCccCccccccCCCCCcceEeEEEEeCCCCC
Confidence 12333332 3555 7775 234677432110 12234679999999986432
Q ss_pred cc-----------eeEEEeC------CCCCCCccceEEEEEC
Q psy12564 1009 HL-----------SDLEIHG------DVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 1009 ~V-----------~sa~I~~------~~~gSDH~PViLdLdL 1033 (1033)
.. ....+.. ...+|||+||+++|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 259 PHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp CSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred cccccceeeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 10 1122211 1357999999999864
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.85 E-value=3.4e-20 Score=190.67 Aligned_cols=245 Identities=14% Similarity=0.062 Sum_probs=137.1
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcCCcEEEEeccccCCC----------CCCCC--------C
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLE----------KLPEC--------P 793 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~dPDVIcLQETk~see----------~L~~e--------l 793 (1033)
...|||+||||++++... . +.|.. ..+.+.+...+...+||||||||+..... .++.. .
T Consensus 7 ~~~lrv~t~Ni~~~~~~~-~-~~~~~-~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 83 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLSTNL-Y-PNWGQ-TERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSG 83 (306)
T ss_dssp CCEEEEEEEEEEECCTTT-C-TTSCH-HHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCS
T ss_pred CCEEEEEEEECccCcccc-c-CCCCH-HHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCceeeccCcccc
Confidence 468999999999875321 0 00100 01234566667889999999999975321 11100 0
Q ss_pred CCCceEeec--CCCCCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCC
Q psy12564 794 EGYHAFWFP--GTRQGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGI 870 (1033)
Q Consensus 794 ~GY~syfs~--s~kkGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~ 870 (1033)
.||...+.. ....+.+|+|||||+|+...... ++ . ..+++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~G~ailSr~pi~~~~~~~~~---------~-------~~~~~--------------------~ 127 (306)
T 2ddr_A 84 SEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFA---------K-------GCGPD--------------------N 127 (306)
T ss_dssp TTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECS---------C-------CC------------------------
T ss_pred cccccccccccccCccCCeEEEEECCCcccccEEEcC---------C-------CCCcc--------------------h
Confidence 145433321 12345679999999997754321 21 0 00001 0
Q ss_pred CCCc-EEEEEe----ceEEEEEEEcCCCcch---hhhHHHHHHHHHHHHHHHHhh--cCCCCEEEeccCCCcCCcccccc
Q psy12564 871 DDGR-VMTVEY----EQFYLVNVYAPAAKED---LSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHNHIDVAL 940 (1033)
Q Consensus 871 seGR-iItVEf----~~LtIINVYlPng~sd---~erLd~R~kFld~L~e~L~qL--~ag~PVII~GDFNaap~eiD~ad 940 (1033)
..+| ++.+++ ..+.|+|+|+++.... ......|..+++.|.+++.+. ..+.|+|||||||+.+...|...
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~ 207 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN 207 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC
Confidence 2333 333443 2699999999876421 013345778888888888764 34679999999999875544310
Q ss_pred ccccCCCCCCChHHHHHHHHHHh-cCCeehhcccCCCCCccccCCCCCC-----CCCCCccceeEEEEcccccccce---
Q psy12564 941 PLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRIYTYWPYYDR-----PSKMKGWRLDYFLISKQLKSHLS--- 1011 (1033)
Q Consensus 941 pk~n~g~sGft~eERa~L~eLLs-aGLvDA~R~~~Pd~g~YTw~S~r~n-----r~~n~GsRIDyILVS~nl~~~V~--- 1011 (1033)
. ..+..++. .++.|. . +.+..+||...... ++...+.||||||+++.+.....
T Consensus 208 ----------s----~~~~~l~~~~~~~~~--~--~~g~~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~~~~~~~~ 269 (306)
T 2ddr_A 208 ----------D----SEYASMFKTLNASVP--S--YTGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIEN 269 (306)
T ss_dssp ----------T----SHHHHHHHHHTBCCC--E--EEECSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEE
T ss_pred ----------C----HHHHHHHHhcCCCCc--c--cCCCCcccCCCCCccccccCCCCCcceeeEEEEeCCCCCcccccc
Confidence 0 12233332 355542 1 12246787432110 12234679999999987642210
Q ss_pred --------eEEEe------CCCCCCCccceEEEEEC
Q psy12564 1012 --------DLEIH------GDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 1012 --------sa~I~------~~~~gSDH~PViLdLdL 1033 (1033)
...+. ....+|||+||+++|.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 270 KVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 305 (306)
T ss_dssp EECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred eeeccccccceeccccccccccCCCCCcceeEEEEe
Confidence 01111 01357999999999975
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.80 E-value=3.7e-19 Score=188.73 Aligned_cols=237 Identities=19% Similarity=0.099 Sum_probs=132.2
Q ss_pred CCCCeEEEEEecccCcccccccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCC--CCC-CCCCCCCceE--eecC
Q psy12564 730 QYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPL--EKL-PECPEGYHAF--WFPG 803 (1033)
Q Consensus 730 ~~s~sLRIvSWNVnGLra~~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~se--e~L-~~el~GY~sy--fs~s 803 (1033)
.....|||+||||+++....... ..|.. .+.+...+...+||||||||+.... ..+ ......|... +...
T Consensus 25 ~~~~~lrV~T~Ni~~~~~~~~~~----~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~~~~g~ 100 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVLYPN----WGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGR 100 (317)
T ss_dssp ---CCCCEEEEEEEECCTTTSTT----SCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTS
T ss_pred CCCCceEEEEEecccCccccCCC----ccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcccccCCc
Confidence 34567999999998875432100 01332 3455667778999999999995421 000 0011112111 1111
Q ss_pred CC--------------CCceEEEEEEcCCcceEeec-ccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccC
Q psy12564 804 TR--------------QGYAGVAVLSKTKPVRVTHG-FSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868 (1033)
Q Consensus 804 ~k--------------kGysGVAILSR~PIlkVe~g-Ls~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~ 868 (1033)
.. ....|+|+|||+|+...... ++ ...++|
T Consensus 101 ~~~~~~~~~~~y~~~~~~~~G~~ilSr~Pi~~~~~~~~~----------------~~~~~d------------------- 145 (317)
T 3i41_A 101 SQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFK----------------SGCGFD------------------- 145 (317)
T ss_dssp CSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEEEEECS----------------CCCSSG-------------------
T ss_pred cccCccCcccccccccccCCccEEEeCCCCccceeEECC----------------CCCCcc-------------------
Confidence 10 11159999999998765431 21 000001
Q ss_pred CCCCCcE-EEEEe----ceEEEEEEEcCCCcch---hhhHHHHHHHHHHHHHHHHhh--cCCCCEEEeccCCCcCCcccc
Q psy12564 869 GIDDGRV-MTVEY----EQFYLVNVYAPAAKED---LSMLSVKLLWNSFLRGHLKSL--NEIKPVVLAGDLNVAHNHIDV 938 (1033)
Q Consensus 869 ~~seGRi-ItVEf----~~LtIINVYlPng~sd---~erLd~R~kFld~L~e~L~qL--~ag~PVII~GDFNaap~eiD~ 938 (1033)
....|. +.+++ ..+.|+|+|+++.... ......|..+++.|.+++++. ..+.|+|||||||+.+..
T Consensus 146 -~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s--- 221 (317)
T 3i41_A 146 -NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT--- 221 (317)
T ss_dssp -GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS---
T ss_pred -cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC---
Confidence 023332 22332 3689999999876421 123456778889999998874 457899999999997632
Q ss_pred ccccccCCCCCCChHHHHHHHHHHh-cCCeehhcccCCCCCccccCCCCCC-----CCCCCccceeEEEEccccccccee
Q psy12564 939 ALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRIYTYWPYYDR-----PSKMKGWRLDYFLISKQLKSHLSD 1012 (1033)
Q Consensus 939 adpk~n~g~sGft~eERa~L~eLLs-aGLvDA~R~~~Pd~g~YTw~S~r~n-----r~~n~GsRIDyILVS~nl~~~V~s 1012 (1033)
..+..|+. .++.|.-. .+..+||.+.... .+...++||||||++.+.......
T Consensus 222 -----------------~~~~~l~~~l~l~~~~~----~g~~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~~~~~~ 280 (317)
T 3i41_A 222 -----------------PEFKDMLKNLNVNDVLY----AGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQL 280 (317)
T ss_dssp -----------------HHHHHHHHHHTBCCCEE----EECSCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSCCCSSE
T ss_pred -----------------HHHHHHHHhcCCCCccc----CCCCcccCCCCCccccccCCCCCCcceEEEEEeCCcCCcccc
Confidence 12233332 36665411 1125777665331 233456799999999987432222
Q ss_pred EEEeC-----------------CCCCCCccceEEE
Q psy12564 1013 LEIHG-----------------DVEGSDHAPQILY 1030 (1033)
Q Consensus 1013 a~I~~-----------------~~~gSDH~PViLd 1030 (1033)
..... ....|||+||.+-
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~ 315 (317)
T 3i41_A 281 VNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAY 315 (317)
T ss_dssp EEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEE
T ss_pred cceeecccCCcccccccccccccCCCCcccceecc
Confidence 11111 0125999999874
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.70 E-value=1.7e-16 Score=177.04 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred CCCCC-CCCcchhhhccCccccCCCchhhhhhcccCCCCCCeEEEEEecccCcccc----cccccchhhhhhh-HHHHHH
Q psy12564 694 LGCDS-SNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAW----SQVNKLFTSIFLQ-QKDGFS 767 (1033)
Q Consensus 694 PkCs~-Cp~~S~aecEEVpIIdf~~p~~~l~~~~~~e~~s~sLRIvSWNVnGLra~----~k~~~S~~~~w~k-rd~Iid 767 (1033)
.+|+. ++.+ +..++|...++.+ ......||||||||..-... ..+.+.....|.. +..|.+
T Consensus 3 ~~~~~~~~~p-----~~R~wi~~~~~~~--------~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~ 69 (398)
T 3ngq_A 3 DNLAVHPEQL-----PPRPWITLKERDQ--------ILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIME 69 (398)
T ss_dssp ---------C-----CCCCEEECSCCC----------CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHH
T ss_pred ccCCCCCCCC-----CCCcceECCCCCC--------CCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHH
Confidence 34553 5555 5667776554322 12346899999999653221 1233344556665 468999
Q ss_pred HHHhcCCcEEEEeccccCC--CCCCCC--CCCCceEeecCC---------CCCceEEEEEEcCCcceEe
Q psy12564 768 FMRQHDLNVFCIQEIRCPL--EKLPEC--PEGYHAFWFPGT---------RQGYAGVAVLSKTKPVRVT 823 (1033)
Q Consensus 768 ~Lre~dPDVIcLQETk~se--e~L~~e--l~GY~syfs~s~---------kkGysGVAILSR~PIlkVe 823 (1033)
+|..++||||||||+.... ..+... ..||..++...+ +.+..|+|||+|...+.+.
T Consensus 70 ~i~~~~pDIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll 138 (398)
T 3ngq_A 70 EIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLV 138 (398)
T ss_dssp HHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEE
T ss_pred HHHhcCCCEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEE
Confidence 9999999999999997532 111111 368987766422 2356899999998876654
No 24
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.60 E-value=1.4e-15 Score=155.77 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=112.4
Q ss_pred EEEEEecccCcccccccccchhhhhhhHHHHHHHHHh--cCCcEEEEeccccCCCC-CC-------CC-CCCCceEeecC
Q psy12564 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQ--HDLNVFCIQEIRCPLEK-LP-------EC-PEGYHAFWFPG 803 (1033)
Q Consensus 735 LRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre--~dPDVIcLQETk~see~-L~-------~e-l~GY~syfs~s 803 (1033)
|||+||||+++.... | +...+.+.|.+ .+||||||||+...... +. .. ..+|.++...+
T Consensus 1 lrv~s~NI~~~g~~~---------~-~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~ 70 (260)
T 2a40_B 1 LKIAAFNIRTFGETK---------M-SNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP 70 (260)
T ss_dssp CEEEEEEEEEESHHH---------H-HSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC
T ss_pred CEEEEEehhhhCCCc---------c-chHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc
Confidence 699999998653221 1 12234444444 28999999999754210 11 00 13476655542
Q ss_pred CC--CCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccCCCCCCcEEEEEe-
Q psy12564 804 TR--QGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEY- 880 (1033)
Q Consensus 804 ~k--kGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~~~seGRiItVEf- 880 (1033)
.. .+..++|+++|.+...+..... +. .+ +.. +. . ... ....++..++.
T Consensus 71 ~~~~~~~~~~~~ly~~~~v~~~~~~~------~~-~~-----~~~----------~~--~----~~~-~R~p~~~~~~~~ 121 (260)
T 2a40_B 71 LGRNSYKERYLFLFRPNKVSVLDTYQ------YD-DG-----CES----------CG--N----DSF-SREPAVVKFSSH 121 (260)
T ss_dssp BCSSSCCBEEEEEECTTTCEEEEEEE------CC-TT-----STT----------TH--H----HHC-SSCCEEEEEECT
T ss_pred CCCCCCcEEEEEEEcCceeEecCcee------cc-CC-----CcC----------CC--C----Cce-eeCCEEEEEEeC
Confidence 21 2345799999988665432210 10 00 000 00 0 000 01223333332
Q ss_pred ----ceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh---cCCCCEEEeccCCCcCCccccccccccCCCCCCChH
Q psy12564 881 ----EQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL---NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQ 953 (1033)
Q Consensus 881 ----~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL---~ag~PVII~GDFNaap~eiD~adpk~n~g~sGft~e 953 (1033)
..+.++++|+++.... +..+.|.+++..+ ....|+|||||||+.+.......|.
T Consensus 122 ~~~g~~~~vi~~Hl~~~~~~--------~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~----------- 182 (260)
T 2a40_B 122 STKVKEFAIVALHSAPSDAV--------AEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWS----------- 182 (260)
T ss_dssp TSSSSEEEEEECCCCGGGHH--------HHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGG-----------
T ss_pred CCCCceEEEEEecCCCCCcH--------HHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhh-----------
Confidence 3689999999865432 1133444444332 3468999999999875411000010
Q ss_pred HHHHHHHHHhcCCeehhcccCCCCCccccCCCCCCCCCCCccceeEEEEcccccc-cc--eeEEEeC-----------CC
Q psy12564 954 ERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKS-HL--SDLEIHG-----------DV 1019 (1033)
Q Consensus 954 ERa~L~eLLsaGLvDA~R~~~Pd~g~YTw~S~r~nr~~n~GsRIDyILVS~nl~~-~V--~sa~I~~-----------~~ 1019 (1033)
.+..+...+|.+.. +.. ..|... . ...+|||||+++.+.. .+ .++.+.. ..
T Consensus 183 ---~l~~~~~~~~~~~~----~~~-~~t~~~-~------~~~~lD~I~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 247 (260)
T 2a40_B 183 ---SIRLRTSSTFQWLI----PDS-ADTTAT-S------TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMAL 247 (260)
T ss_dssp ---GCHHHHSTTEEESS----CTT-CCCBSS-S------CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHH
T ss_pred ---heeeeccCCceEcc----cCC-CCCccc-C------CCCCcccEEEcchHhhhcccCCCCceeehHHhcCCCHHHHh
Confidence 11112223443221 111 122221 1 1238999999987532 12 3556642 11
Q ss_pred CCCCccceEEEEE
Q psy12564 1020 EGSDHAPQILYLN 1032 (1033)
Q Consensus 1020 ~gSDH~PViLdLd 1032 (1033)
..|||+||+++|.
T Consensus 248 ~~SDH~PV~~~l~ 260 (260)
T 2a40_B 248 AISDHYPVEVTLT 260 (260)
T ss_dssp HHCSBCCEEEEBC
T ss_pred hcCCCCeEEEEeC
Confidence 2599999999873
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.59 E-value=1.3e-14 Score=154.51 Aligned_cols=149 Identities=14% Similarity=0.223 Sum_probs=95.0
Q ss_pred CeEEEEEecccCcccccccccchhhhhhhHHHHHHHHHhcC-CcEEEEeccccCCC------------CCCCC----C--
Q psy12564 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHD-LNVFCIQEIRCPLE------------KLPEC----P-- 793 (1033)
Q Consensus 733 ~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre~d-PDVIcLQETk~see------------~L~~e----l-- 793 (1033)
..+||+|||++|..+... .-|. ..+.++|+..+ +|||+|||+...+. ..+.. .
T Consensus 14 ~~~kV~TwNiqgs~~~te------skw~--~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lG 85 (262)
T 2f1n_A 14 TDFRVATWNLQGASATTE------SKWN--INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLS 85 (262)
T ss_dssp GGCCEEEEEEEECTTSCH------HHHH--THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECC
T ss_pred ceeEEEEEEcCCCCCCCc------cccc--ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhC
Confidence 568999999998655321 1132 45778999988 99999999985421 11110 1
Q ss_pred ----CCCceEeec--CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhcccc
Q psy12564 794 ----EGYHAFWFP--GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADA 867 (1033)
Q Consensus 794 ----~GY~syfs~--s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~ 867 (1033)
+++.++|.. ....+..|+||+||+++.++.. ++ .+..
T Consensus 86 t~srp~~~yiY~~~~D~~~~r~nlAIlSr~~adev~v-Lp---------------~~~~--------------------- 128 (262)
T 2f1n_A 86 TNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFV-LS---------------PVRQ--------------------- 128 (262)
T ss_dssp SSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEE-EC---------------CSST---------------------
T ss_pred CCCCCceEEEEEeeccCCCCceeeEEEEcccccceEE-CC---------------CCCC---------------------
Confidence 235544444 2345778999999999775321 21 0000
Q ss_pred CCCCCCcEEEEEeceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhhcCC-----CCEEEeccCCCcCCc
Q psy12564 868 SGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEI-----KPVVLAGDLNVAHNH 935 (1033)
Q Consensus 868 ~~~seGRiItVEf~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL~ag-----~PVII~GDFNaap~e 935 (1033)
..-.++.+++.+..|+++|+-..+.. + +.++...+.+++... .+ .||||+||||..|.+
T Consensus 129 ---~~Rp~lgiri~~~~ff~tHa~a~~g~-d----a~a~v~~I~~~~~~~-~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 129 ---GGRPLLGIRIGNDAFFTAHAIAMRNN-D----APALVEEVYNFFRDS-RDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp ---TCCCEEEEEETTEEEEEEECCSSSSC-S----HHHHHHHHHHHHHTC-SSHHHHTCEEEEEEECSSCHHH
T ss_pred ---CCCceEEEEECCEEEEEEEecCCCCc-c----HHHHHHHHHHHHhcC-cccccCCCcEEEEecCCCCCcc
Confidence 11224557888999999999876432 2 234566676666652 23 599999999998653
No 26
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=5.1e-16 Score=182.98 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=39.6
Q ss_pred CCCeEEEEEecccCcccc----cccccchhhhhhh-HHHHHHHHHhcCCcEEEEeccccCC--CCCCCC--CCCCceEee
Q psy12564 731 YPWNFKIGSWNVNGIRAW----SQVNKLFTSIFLQ-QKDGFSFMRQHDLNVFCIQEIRCPL--EKLPEC--PEGYHAFWF 801 (1033)
Q Consensus 731 ~s~sLRIvSWNVnGLra~----~k~~~S~~~~w~k-rd~Iid~Lre~dPDVIcLQETk~se--e~L~~e--l~GY~syfs 801 (1033)
....+++++||+.+.... ..+.+.+...|.. +..|.+.|+.++||||||||+.... ..+... ..||..++.
T Consensus 391 ~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~ 470 (727)
T 4b8c_D 391 AKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFH 470 (727)
T ss_dssp -----------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-
T ss_pred cccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEe
Confidence 345689999999752211 1233444455665 4679999999999999999997531 111222 358876653
Q ss_pred cC---------CCCCceEEEEEEcCC
Q psy12564 802 PG---------TRQGYAGVAVLSKTK 818 (1033)
Q Consensus 802 ~s---------~kkGysGVAILSR~P 818 (1033)
.. ...+..|+|||+|..
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~s 496 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRD 496 (727)
T ss_dssp ---------------CCCCEEEC---
T ss_pred ccCCcccccccCCCCcccEEEEEEcc
Confidence 31 123467999995443
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.58 E-value=3.2e-14 Score=151.61 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=88.5
Q ss_pred eEEEEEecccCcccccccccchhhhhhhHHHHHHHHHh-cCCcEEEEeccccCCCC-CC--CC-----------------
Q psy12564 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQ-HDLNVFCIQEIRCPLEK-LP--EC----------------- 792 (1033)
Q Consensus 734 sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre-~dPDVIcLQETk~see~-L~--~e----------------- 792 (1033)
.+||+||||+|-.+... .-|. ..+.++|++ .+||||+|||+..-... .. ..
T Consensus 4 ~~kv~TwNi~g~~~~~~------~k~~--~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~ 75 (261)
T 1sr4_B 4 DFKVATWNLQGSSAVNE------SKWN--INVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGT 75 (261)
T ss_dssp GSCEEEEECCCCSSSSH------HHHH--HHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSC
T ss_pred ccEEEEEEcCCCCCCCh------hhhh--hHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhccc
Confidence 57899999998433220 1122 269999999 88999999999763221 00 10
Q ss_pred --CCCCceEe-ec-CCCCCceEEEEEEcCCcceEeecccccccceeeccccCCCCCCCCCCCCCCCCCCccchhhccccC
Q psy12564 793 --PEGYHAFW-FP-GTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADAS 868 (1033)
Q Consensus 793 --l~GY~syf-s~-s~kkGysGVAILSR~PIlkVe~gLs~~~~Gvl~s~g~~r~ipe~~~DI~~~~~~p~L~~l~~~d~~ 868 (1033)
.+++.+++ .. ....+..|+||+||.++..+. .++ .+.- .
T Consensus 76 ~~r~~~~yiy~~~~d~~~g~~g~AIlSR~~~~~v~-~l~---------------~~~~--~------------------- 118 (261)
T 1sr4_B 76 RSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAF-IVH---------------SDSS--V------------------- 118 (261)
T ss_dssp SSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEE-EEC---------------CCCC--S-------------------
T ss_pred ccCCCceEEEEEeecCCCCccceEEEEccchhceE-EcC---------------CCCC--C-------------------
Confidence 11333333 22 234467899999999865432 111 0000 0
Q ss_pred CCCCCc-EEEEEeceEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHHhh--cCC---CCEEEeccCCCcC
Q psy12564 869 GIDDGR-VMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL--NEI---KPVVLAGDLNVAH 933 (1033)
Q Consensus 869 ~~seGR-iItVEf~~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~qL--~ag---~PVII~GDFNaap 933 (1033)
.+.| ++.+++.++.|+++|+...+... +.++...|.+++... ..+ .++||+||||..+
T Consensus 119 --~~~R~~l~i~i~g~~f~s~Hl~~~~~~e-----a~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p 182 (261)
T 1sr4_B 119 --LQSRPAVGIRIGTDVFFTVHALATGGSD-----AVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAP 182 (261)
T ss_dssp --SCCCCEEEEEETTEEEEEEECCTTTTTT-----HHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCH
T ss_pred --CcCcceEEEEECCeEEEEeCCCCCCCch-----HHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCCh
Confidence 1222 34567778999999998876321 223455566665442 023 6999999999863
No 28
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.56 E-value=1.2e-16 Score=172.08 Aligned_cols=129 Identities=9% Similarity=-0.024 Sum_probs=109.6
Q ss_pred CcccccccCCHHHHHHHhhcCcchheecccccee-----eccccccccCCchhhhhh-cccccccCCCCcccchhcccCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVK-----TVPSENVQNTKGKFELLK-EIKFERTGSEDTSEDVEESGFF 646 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~-----~v~~~~~ev~~g~eeLlk-lpGVGrk~~~~TAn~V~~~~f~ 646 (1033)
+-+++|..+++++|+++| .++|++. ||++++ ++..+.+++|+..++|++ |||||+| ||+.|+..+|.
T Consensus 79 ptpe~La~a~~eel~~~i--r~lG~~~-KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~k----TA~~iL~~a~g 151 (287)
T 3n5n_X 79 PTLQDLASASLEEVNQLW--AGLGYYS-RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRY----TAGAIASIAFG 151 (287)
T ss_dssp CSHHHHHTSCHHHHHHHH--TTSSCHH-HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHH----HHHHHHHHHSC
T ss_pred CCHHHHHcCCHHHHHHHH--HHcCCHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHH----HHHHHHHHhcC
Confidence 457889999999999999 7788876 777765 455677889999999999 9999996 99999999987
Q ss_pred CC---CCCCccccccccccC-----ChHHHHhhhc-------CcccccccccccccCcccc---cCCCCCCCCcchhhhc
Q psy12564 647 TV---EPIPDSNLYNEWEYR-----PPKRKKASRK-------NVFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVE 708 (1033)
Q Consensus 647 ~~---~p~HVhRIsNRwG~v-----P~ktEkAL~k-------~~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecE 708 (1033)
.+ +|.||+|+++|+|++ +.+++++|.. ...|..+|.+||.||+.+| +|.|..||+. ..|.
T Consensus 152 ~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~--~~C~ 229 (287)
T 3n5n_X 152 QATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVE--SLCR 229 (287)
T ss_dssp CCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTG--GGCH
T ss_pred CCCccccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCCh--hhhH
Confidence 66 566999999999998 3566776632 2689999999999999999 7999999999 8887
Q ss_pred cC
Q psy12564 709 EV 710 (1033)
Q Consensus 709 EV 710 (1033)
..
T Consensus 230 ~~ 231 (287)
T 3n5n_X 230 AR 231 (287)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 29
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.53 E-value=1.5e-16 Score=165.17 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=110.6
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceeec-----cccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTV-----PSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v-----~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-++.|..+++++|+++| .+++++..||++++.+ ..+.+++|...++|++|||||++ ||+.|+..+|..
T Consensus 63 pt~~~la~a~~~~l~~~i--~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~----TA~~il~~a~g~ 136 (226)
T 1orn_A 63 RTPHDYIAVPLEELEQDI--RSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRK----TANVVVSVAFGV 136 (226)
T ss_dssp CSHHHHHSSCHHHHHHHT--GGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHH----HHHHHHHHHHCC
T ss_pred CCHHHHHcCCHHHHHHHH--HHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHH----HHHHHHHHHCCC
Confidence 457899999999999999 7777777777766544 45667889999999999999996 999999988776
Q ss_pred C---CCCCccccccccccC-----ChHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhccC
Q psy12564 648 V---EPIPDSNLYNEWEYR-----PPKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEV 710 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v-----P~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEV 710 (1033)
+ +|.||+|+++|||++ |++++..+++. .+|..+|.+++.||+.+| +|.|..||+. ..|+..
T Consensus 137 ~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~--~~C~~~ 211 (226)
T 1orn_A 137 PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLL--HLCREG 211 (226)
T ss_dssp CCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTG--GGCHHH
T ss_pred ceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCCh--hhhhhH
Confidence 5 555999999999996 56777777766 589999999999999999 6999999999 888764
No 30
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.52 E-value=2e-16 Score=162.19 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=109.8
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceeec-----cccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTV-----PSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v-----~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-++++..+++++|+++| .++|++..||++++.+ ..+.+++|...++|++|||||++ ||+.|+..+|..
T Consensus 59 pt~~~la~a~~~~l~~~i--~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~----tA~~il~~~~~~ 132 (211)
T 2abk_A 59 NTPAAMLELGVEGVKTYI--KTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK----TANVVLNTAFGW 132 (211)
T ss_dssp CSHHHHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHH----HHHHHHHHHHCC
T ss_pred CCHHHHHCCCHHHHHHHH--HHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChH----HHHHHHHHHCCC
Confidence 447889999999999999 6677776677666544 45667888889999999999996 999999988766
Q ss_pred C---CCCCccccccccccC----ChHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhccC
Q psy12564 648 V---EPIPDSNLYNEWEYR----PPKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEV 710 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~v----P~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEV 710 (1033)
+ +|.||+|+++|+|+. |++.++.+++. .+|..+|.+|+.||+.+| +|.|..||+. ..|...
T Consensus 133 ~~~~vD~~v~Rv~~rlgl~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~--~~C~~~ 206 (211)
T 2abk_A 133 PTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE--DLCEYK 206 (211)
T ss_dssp CCCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTG--GGCCCT
T ss_pred CcCCcCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCCh--hhCCCc
Confidence 5 556999999999997 67777777766 589999999999999999 7999999999 888854
No 31
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.47 E-value=7.2e-16 Score=159.41 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=105.5
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceeec-----cccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTV-----PSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v-----~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-++++..+++++|+++| .++|++..||++++.+ ..+.+.+|...++|++|||||++ ||+.|+..+|..
T Consensus 65 ptp~~la~a~~e~l~~~i--~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~----TA~~il~~~~~~ 138 (221)
T 1kea_A 65 KCFEDILKTPKSEIAKDI--KEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKY----TCAAVMCLAFGK 138 (221)
T ss_dssp CSHHHHHHSCHHHHHHHT--GGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHH----HHHHHHHHTTCC
T ss_pred CCHHHHHCCCHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHH----HHHHHHHHhcCC
Confidence 447899999999999999 7777777777666544 44567889889999999999996 999999988776
Q ss_pred C---CCCCcccccccc-ccC----ChHHHHhhhcC-------cccccccccccccCcccc---cCCCCCCCCcchhhhcc
Q psy12564 648 V---EPIPDSNLYNEW-EYR----PPKRKKASRKN-------VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 648 ~---~p~HVhRIsNRw-G~v----P~ktEkAL~k~-------~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEE 709 (1033)
+ +|.||+|+.+|+ |+. |.+ +++|.+. ..|..+|.+||.||+.+| +|.|..||+. ..|..
T Consensus 139 ~~~~vD~~v~Rv~~rl~gl~~~~~~~~-~~~l~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~--~~C~~ 215 (221)
T 1kea_A 139 KAAMVDANFVRVINRYFGGSYENLNYN-HKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMS--KLCSY 215 (221)
T ss_dssp CCCCCCHHHHHHHHHHHCGGGTTCCTT-SHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTT--TTCHH
T ss_pred CcceecHHHHHHHHHHhCCCCCCCcHH-HHHHHHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCCh--hhchh
Confidence 6 556999999999 997 223 4555442 579999999999999999 7999999999 78864
No 32
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.46 E-value=1.3e-15 Score=157.68 Aligned_cols=128 Identities=7% Similarity=-0.035 Sum_probs=106.4
Q ss_pred cccccccCCHHHHHHHhhcCcchheeccccceee-----ccccccccCCchhhhhhcccccccCCCCcccchhcccCCCC
Q psy12564 574 PAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKT-----VPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTV 648 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~-----v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~~ 648 (1033)
-+++|..+++++|.++| .++|++ .||++++. +..+.+++|+..++|++|||||++ ||+.|+..+|..+
T Consensus 61 t~~~la~~~~~~l~~~i--~~~G~~-~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~----TA~~il~~a~~~~ 133 (225)
T 1kg2_A 61 TVTDLANAPLDEVLHLW--TGLGYY-ARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRS----TAGAILSLSLGKH 133 (225)
T ss_dssp SHHHHHHSCHHHHHHHH--TTSCCT-HHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHH----HHHHHHHHHHCCS
T ss_pred CHHHHHCCCHHHHHHHH--HhCChH-HHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHH----HHHHHHHHhCCCC
Confidence 37889999999999999 777776 46766644 445677889999999999999996 9999999886655
Q ss_pred ---CCCCccccccccc-cC----ChHHHHhhhcC-----c--ccccccccccccCcccc---cCCCCCCCCcchhhhccC
Q psy12564 649 ---EPIPDSNLYNEWE-YR----PPKRKKASRKN-----V--FSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEEV 710 (1033)
Q Consensus 649 ---~p~HVhRIsNRwG-~v----P~ktEkAL~k~-----~--~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEEV 710 (1033)
+|.||+|+++|+| +. +.+++++|.+. | .|..+|.+|+.||+.+| +|.|..||+. ..|+..
T Consensus 134 ~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~--~~C~~~ 211 (225)
T 1kg2_A 134 FPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQ--NGCIAA 211 (225)
T ss_dssp CCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTT--TTCHHH
T ss_pred cceeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCh--hhCHHH
Confidence 6679999999995 43 46677777652 3 79999999999999999 7999999999 888765
No 33
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.41 E-value=4.9e-15 Score=162.84 Aligned_cols=129 Identities=10% Similarity=-0.032 Sum_probs=106.7
Q ss_pred CcccccccCCHHHHHHHhhcCcchheeccccceee-----ccccccccCCchhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKT-----VPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~-----v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
+-+++++.+++++|.++| .+++++. ||++++. +..+.+.+|...++|++|||||++ ||+.|+..+|..
T Consensus 69 pt~~~la~a~~~~l~~~i--~~~G~~~-ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~----tA~~il~~~~~~ 141 (369)
T 3fsp_A 69 PTLEALADADEDEVLKAW--EGLGYYS-RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPY----TVGAVLSLAYGV 141 (369)
T ss_dssp CSHHHHHTSCHHHHHHTT--TTSSCTH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHH----HHHHHHHHHHCC
T ss_pred CCHHHHHCCCHHHHHHHH--HhcChHH-HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHH----HHHHHHHHHCCC
Confidence 457889999999999999 7788876 7777654 445678899999999999999996 999999999776
Q ss_pred C---CCCCccccccccccCC---------hHHHHhhhcC---cccccccccccccCcccc---cCCCCCCCCcchhhhcc
Q psy12564 648 V---EPIPDSNLYNEWEYRP---------PKRKKASRKN---VFSFKLNEIHVGTGKIEN---RLGCDSSNETSYAEVEE 709 (1033)
Q Consensus 648 ~---~p~HVhRIsNRwG~vP---------~ktEkAL~k~---~~w~~in~lLV~~Gq~iC---RPkCs~Cp~~S~aecEE 709 (1033)
+ +|.||+|+++|+|+++ .+.+..++.. ..|..+|.+|+.||+.+| +|.|..||+. ..|..
T Consensus 142 ~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~--~~C~~ 219 (369)
T 3fsp_A 142 PEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQ--AYCQA 219 (369)
T ss_dssp CCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTG--GGCHH
T ss_pred CcccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCh--hhhHH
Confidence 6 5559999999999872 2333334433 479999999999999999 7999999999 88876
Q ss_pred C
Q psy12564 710 V 710 (1033)
Q Consensus 710 V 710 (1033)
.
T Consensus 220 ~ 220 (369)
T 3fsp_A 220 F 220 (369)
T ss_dssp H
T ss_pred H
Confidence 5
No 34
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.28 E-value=1.8e-12 Score=137.32 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=26.0
Q ss_pred ceeEEEEccccc--ccceeEEEeCCCCCCCccceEEEEEC
Q psy12564 996 RLDYFLISKQLK--SHLSDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 996 RIDyILVS~nl~--~~V~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
-+||||++..-. ..+...........|||+||.+.|.+
T Consensus 241 w~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~ 280 (282)
T 2imq_X 241 WTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRV 280 (282)
T ss_dssp CCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred ccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEE
Confidence 479999986321 12344555545668999999999864
No 35
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.16 E-value=1.4e-09 Score=119.70 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=31.4
Q ss_pred eEEEEEEEcCCCcchhhhHHHHHHHHHHHHHHHH-----hhcCCCCEEEeccCCCcC
Q psy12564 882 QFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK-----SLNEIKPVVLAGDLNVAH 933 (1033)
Q Consensus 882 ~LtIINVYlPng~sd~erLd~R~kFld~L~e~L~-----qL~ag~PVII~GDFNaap 933 (1033)
.+.++|+|+.++.... ..|.+.+..+...+. .+....++|++||||...
T Consensus 159 ~l~fvn~HLaa~~~~~---~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 159 GLCFITSHLAAGYTNY---DERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp EEEEEEEECCCCSSCH---HHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred EEEEEEecCCCCCccH---HHHHHHHHHHHHhhccCcccccccCccEEEeccccccc
Confidence 6999999999876532 234444444444332 112457899999999653
No 36
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.11 E-value=8.6e-13 Score=136.96 Aligned_cols=111 Identities=8% Similarity=-0.043 Sum_probs=88.3
Q ss_pred cccccCCHHHHHHHhhcCcch--heeccccceeeccc--cc-----c--ccCCchhhhh-hcccccccCCCCcccchhcc
Q psy12564 576 HKMSLAPERKIAQFNNRNKLV--LLHTKTTHVKTVPS--EN-----V--QNTKGKFELL-KEIKFERTGSEDTSEDVEES 643 (1033)
Q Consensus 576 ~~~~~~~e~~i~~~~~r~ka~--~~~~ka~~~~~v~~--~~-----~--ev~~g~eeLl-klpGVGrk~~~~TAn~V~~~ 643 (1033)
+.|..+++++|+++| .+++ |++.||++++.+.+ .. + .+|...++|+ +|||||+| |||+|+..
T Consensus 71 ~~l~~~~~eeL~~~I--r~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~K----TA~~vL~~ 144 (214)
T 3fhf_A 71 DGFLTLPREELEEKL--KNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYK----EASHFLRN 144 (214)
T ss_dssp THHHHSCHHHHHHHH--HHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHH----HHHHHHHH
T ss_pred HHHHCCCHHHHHHHH--HHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHH----HHHHHHHH
Confidence 458889999999999 8999 99999999887776 32 2 4667779999 99999996 99999865
Q ss_pred cCCCC---CCCCccccccccccCChHHHHhhhcCcccccccccccccCcccccC
Q psy12564 644 GFFTV---EPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRL 694 (1033)
Q Consensus 644 ~f~~~---~p~HVhRIsNRwG~vP~ktEkAL~k~~~w~~in~lLV~~Gq~iCRP 694 (1033)
++... +|.||+|+++|||++++ +.+.+- ...|..++.+++.||+.+|.+
T Consensus 145 ~g~~~~~vVDthv~Ri~~RlG~~~~-~~k~lt-~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 145 VGYDDVAIIDRHILRELYENNYIDE-IPKTLS-RRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp TTCCSCCCCCHHHHHHHHHTTSSSS-CCSSCC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCcccCcHHHHHHHHHcCCCCC-CCCcCC-HHHHHHHHHHHHHHHHHHCCC
Confidence 43443 56699999999999963 111111 168899999999999999944
No 37
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=98.97 E-value=7.6e-12 Score=129.46 Aligned_cols=110 Identities=9% Similarity=-0.007 Sum_probs=92.6
Q ss_pred ccccccCCHHHHHHHhhcCcchheeccccceeeccccc-----c----ccCCchhhhhhcccccccCCCCcccchhcccC
Q psy12564 575 AHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSEN-----V----QNTKGKFELLKEIKFERTGSEDTSEDVEESGF 645 (1033)
Q Consensus 575 ~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~-----~----ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f 645 (1033)
+++|..+++++|+++| .+++++..||++++.+.+.. + .+|...++|+++||||+| ||+.|+.-+|
T Consensus 69 ~~~la~~~~e~L~~~i--r~~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~k----TA~~il~~a~ 142 (218)
T 1pu6_A 69 LKKIAYIEFSKLAECV--RPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKE----SADAILCYAC 142 (218)
T ss_dssp HHHHHHSCHHHHHHHT--GGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHH----HHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHH--HHCCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHH----HHHHHHHHHC
Confidence 6889999999999999 88888888888877665543 3 456667899999999996 9999999997
Q ss_pred CCC---CCCCccccccccccC---ChHHHHhhhc----C-c--------------ccccccccccccCcc
Q psy12564 646 FTV---EPIPDSNLYNEWEYR---PPKRKKASRK----N-V--------------FSFKLNEIHVGTGKI 690 (1033)
Q Consensus 646 ~~~---~p~HVhRIsNRwG~v---P~ktEkAL~k----~-~--------------~w~~in~lLV~~Gq~ 690 (1033)
..+ +|.||+|+++|||+. |+++++.+++ + | .|..+|.++|.|||.
T Consensus 143 ~~~~~~vD~~v~Ri~~rlg~~~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 143 AKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp CCSCCCCCHHHHHHHHHTTCCCCSHHHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCHHHHHHHHHcCCCCCCHHHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 765 555999999999997 8888888887 3 3 488999999999975
No 38
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.90 E-value=5.5e-09 Score=115.56 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=41.7
Q ss_pred CCeEEEEEecccCcccccccccchhhhhhhHHHHHHHH----HhcCCcE--EEEeccccCCCCCCC---C--CCCCceEe
Q psy12564 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFM----RQHDLNV--FCIQEIRCPLEKLPE---C--PEGYHAFW 800 (1033)
Q Consensus 732 s~sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~L----re~dPDV--IcLQETk~see~L~~---e--l~GY~syf 800 (1033)
.-++.|+||||+|..... ..+.+++ .+..||| |+|||+......... . ..+|..+.
T Consensus 25 ~l~i~v~TwNv~g~~~~~-------------~~L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~ 91 (357)
T 2xsw_A 25 NVALFVATWNMQGQKELP-------------PSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLS 91 (357)
T ss_dssp EEEEEEEEEECTTCSSCC-------------SCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEE
T ss_pred CceEEEEEEecCCCCCCc-------------ccHHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchh
Confidence 356899999999864332 1123333 2367996 889998643110000 0 23443322
Q ss_pred ecCCCCCceEEEEEEcCCcc
Q psy12564 801 FPGTRQGYAGVAVLSKTKPV 820 (1033)
Q Consensus 801 s~s~kkGysGVAILSR~PIl 820 (1033)
+. .-+.-+++||+|.++.
T Consensus 92 s~--~l~g~~l~Vfvr~~~~ 109 (357)
T 2xsw_A 92 SA--AHGVLYMSLFIRRDLI 109 (357)
T ss_dssp EE--EETTEEEEEEEEGGGG
T ss_pred hh--hhhhEEEEEEEchHHh
Confidence 21 2244679999998854
No 39
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=98.69 E-value=2.4e-10 Score=117.36 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=83.1
Q ss_pred cccccCCHHHHHHHhhcCcch--heeccccceeeccc------------cccccC-CchhhhhhcccccccCCCCcccch
Q psy12564 576 HKMSLAPERKIAQFNNRNKLV--LLHTKTTHVKTVPS------------ENVQNT-KGKFELLKEIKFERTGSEDTSEDV 640 (1033)
Q Consensus 576 ~~~~~~~e~~i~~~~~r~ka~--~~~~ka~~~~~v~~------------~~~ev~-~g~eeLlklpGVGrk~~~~TAn~V 640 (1033)
+.+..+++++|+++| .+++ ++..||++++.+.+ +.+..| ...++|+++||||+| ||+.|
T Consensus 60 ~~l~~~~~e~l~~~i--r~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~k----TA~~i 133 (207)
T 3fhg_A 60 QKIYYANEEEIRNIL--KSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQ----EASHF 133 (207)
T ss_dssp GGGGTCCHHHHHHHH--HHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHH----HHHHH
T ss_pred HHHHcCCHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHH----HHHHH
Confidence 578889999999999 4444 67777766665444 233556 556889999999996 99999
Q ss_pred hcc-cCCCC--CCCCccccccccccCChHHHHhhhcC---cccccccccccccCcccccC
Q psy12564 641 EES-GFFTV--EPIPDSNLYNEWEYRPPKRKKASRKN---VFSFKLNEIHVGTGKIENRL 694 (1033)
Q Consensus 641 ~~~-~f~~~--~p~HVhRIsNRwG~vP~ktEkAL~k~---~~w~~in~lLV~~Gq~iCRP 694 (1033)
+.. +|... +|.||+|+++|||+++.. +.+. ..|..+++.++.||+..|.+
T Consensus 134 l~~~~~~~~~~vD~~v~Ri~~rlg~~~~~----~~k~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 134 LRNVGYFDLAIIDRHIIDFMRRIGAIGET----NVKQLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp HHHTTCCSSCCCCHHHHHHHHHTTSSCCC----CCSCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhCCCCcceecHHHHHHHHHcCCCCcc----ccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 995 86322 556999999999998652 3333 57888999999999888843
No 40
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=98.57 E-value=2.3e-09 Score=111.67 Aligned_cols=84 Identities=6% Similarity=-0.034 Sum_probs=69.4
Q ss_pred cccccCCHHHHHHHhhcCcch--heeccccceeecccc--------ccccCCchhhhh-hcccccccCCCCcccchhcc-
Q psy12564 576 HKMSLAPERKIAQFNNRNKLV--LLHTKTTHVKTVPSE--------NVQNTKGKFELL-KEIKFERTGSEDTSEDVEES- 643 (1033)
Q Consensus 576 ~~~~~~~e~~i~~~~~r~ka~--~~~~ka~~~~~v~~~--------~~ev~~g~eeLl-klpGVGrk~~~~TAn~V~~~- 643 (1033)
+.|+.+++++|+++| .+++ |+..||++++.+.+. .+.+|...++|+ ++||||+| ||++|+..
T Consensus 77 ~~l~~~~~eeL~~~I--r~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~k----TA~~vL~~~ 150 (219)
T 3n0u_A 77 KGFVHLPLEELAEKL--REVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWK----EASHFLRNT 150 (219)
T ss_dssp THHHHCCHHHHHHHH--HHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHH----HHHHHHHTT
T ss_pred HHHHcCCHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHH----HHHHHHHHc
Confidence 568999999999999 8888 888999888877764 356777789999 99999996 99999864
Q ss_pred cCCC--CCCCCccccccccccCCh
Q psy12564 644 GFFT--VEPIPDSNLYNEWEYRPP 665 (1033)
Q Consensus 644 ~f~~--~~p~HVhRIsNRwG~vP~ 665 (1033)
++.. ++|.||+|+++|||+++.
T Consensus 151 g~~~~~~VDthv~Ri~~rlg~~~~ 174 (219)
T 3n0u_A 151 GVEDLAILDKHVLRLMKRHGLIQE 174 (219)
T ss_dssp TCCSCCCCCHHHHHHHHHTTSCSS
T ss_pred CCCCeeeecHHHHHHHHHcCCCCc
Confidence 4312 267799999999999854
No 41
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.51 E-value=1.4e-06 Score=95.22 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.2
Q ss_pred eEEEEEecccCcccccccccchhhhhhhHHHHHHHHHh--cCCc--EEEEeccccC
Q psy12564 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQ--HDLN--VFCIQEIRCP 785 (1033)
Q Consensus 734 sLRIvSWNVnGLra~~k~~~S~~~~w~krd~Iid~Lre--~dPD--VIcLQETk~s 785 (1033)
++.|+||||+|.+... .+.+||.. ..|| ||+|||+...
T Consensus 9 ~i~v~TwNvng~~~~~--------------~l~~wL~~~~~~pDI~viGlQE~~l~ 50 (313)
T 3mtc_A 9 RFFAGTYNVNGQSPKE--------------CLRLWLSNGIQAPDVYCVGFQELDLS 50 (313)
T ss_dssp EEEEEEEECTTCCCCS--------------CTHHHHSSSCCCCSEEEEEEECSCCS
T ss_pred EEEEEEEEcCCccCch--------------hHHHHhcccCCCCCeEEEEEEecccc
Confidence 5788999999986532 25566665 6799 7999999653
No 42
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.12 E-value=2e-05 Score=86.25 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=24.2
Q ss_pred cceeEEEEcccccccc--eeEEEeCCCCCCCccceEEEEEC
Q psy12564 995 WRLDYFLISKQLKSHL--SDLEIHGDVEGSDHAPQILYLNL 1033 (1033)
Q Consensus 995 sRIDyILVS~nl~~~V--~sa~I~~~~~gSDH~PViLdLdL 1033 (1033)
+=.|+||....-...+ ....-..+...|||.||.+.|.+
T Consensus 271 aWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 311 (316)
T 4a9c_A 271 SWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 311 (316)
T ss_dssp BCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEE
T ss_pred cccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEE
Confidence 3479999765311112 22223345667999999998863
No 43
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=97.94 E-value=5e-07 Score=90.32 Aligned_cols=65 Identities=11% Similarity=-0.023 Sum_probs=58.1
Q ss_pred cccccccCCHHHHHHHhhcCcchheeccccceeeccccccccCCchhhhhhcccccccCCCCcccchhcccCC
Q psy12564 574 PAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFF 646 (1033)
Q Consensus 574 ~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~f~ 646 (1033)
-.++|+.+++++|+++| .++|+|+.||++++.. ..+.+|++.++|++|||||+. ||+.|+.-+|.
T Consensus 62 t~~~la~a~~~el~~~i--~~lG~y~~KAk~i~~~--a~~~vp~~~~~L~~LpGVG~y----TAdav~~F~~~ 126 (161)
T 4e9f_A 62 SAEVARTADWRDVSELL--KPLGLYDLRAKTIVKF--SDEYLTKQWKYPIELHGIGKY----GNDSYRIFCVN 126 (161)
T ss_dssp SHHHHTTSCHHHHHHHH--GGGSCHHHHHHHHHHH--HHHHHHSCCSSGGGSTTCCHH----HHHHHHHHTSS
T ss_pred CHHHHhccChHhHHhHh--hhcCCHHHHHHHHHHH--hCCcCCCChhhhhcCCCchHH----HHHHHHHHHCC
Confidence 47889999999999999 9999999999776554 568899999999999999996 99999998865
No 44
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=97.87 E-value=5.4e-07 Score=99.91 Aligned_cols=109 Identities=4% Similarity=-0.052 Sum_probs=80.4
Q ss_pred CCcccccccCCH-HHHHHHhhcCcchheeccccceeeccccccc--------cC--CchhhhhhcccccccCCCCcccch
Q psy12564 572 VLPAHKMSLAPE-RKIAQFNNRNKLVLLHTKTTHVKTVPSENVQ--------NT--KGKFELLKEIKFERTGSEDTSEDV 640 (1033)
Q Consensus 572 ~~~~~~~~~~~e-~~i~~~~~r~ka~~~~~ka~~~~~v~~~~~e--------v~--~g~eeLlklpGVGrk~~~~TAn~V 640 (1033)
.|.++.+..++. +.|..+=-++||+.|+..| ..++..+.++ .| ...++|++|||||+| ||+.|
T Consensus 196 fPtpe~La~~~~ee~Lr~~Gl~~RA~~I~~~A--~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~----TA~~i 269 (360)
T 2xhi_A 196 FPSLQALAGPEVEAHLRKLGLGYRARYVSASA--RAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTC----VADKI 269 (360)
T ss_dssp CCCHHHHTSTTHHHHHHHTTCTTHHHHHHHHH--HHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHH----HHHHH
T ss_pred CCCHHHHHcCCHHHHHHHcCCcHHHHHHHHHH--HHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHH----HHHHH
Confidence 355778888875 4676654467888888888 5666655443 55 556889999999996 99999
Q ss_pred hcccCCCC----CCCCcccccccc-ccCC---------hHHHHhhhcC--cccccccccccc
Q psy12564 641 EESGFFTV----EPIPDSNLYNEW-EYRP---------PKRKKASRKN--VFSFKLNEIHVG 686 (1033)
Q Consensus 641 ~~~~f~~~----~p~HVhRIsNRw-G~vP---------~ktEkAL~k~--~~w~~in~lLV~ 686 (1033)
+--+|..+ ++.||+|+++|+ |+++ .+++++|++. +.|.+++.+...
T Consensus 270 ll~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~ 331 (360)
T 2xhi_A 270 CLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQA 331 (360)
T ss_dssp HHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHhCCCCCEEEecHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887665 566999999996 8763 6677776654 688887776643
No 45
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=97.59 E-value=1.6e-06 Score=93.40 Aligned_cols=112 Identities=9% Similarity=-0.043 Sum_probs=78.0
Q ss_pred CCcccccccCCHHHHHHHhhcCcchheeccccceeeccccc-------cccCCchhhhhhcccccccCCCCcccchhccc
Q psy12564 572 VLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSEN-------VQNTKGKFELLKEIKFERTGSEDTSEDVEESG 644 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~-------~ev~~g~eeLlklpGVGrk~~~~TAn~V~~~~ 644 (1033)
.|.++.+..++++++.++=-.+||+.++..| ..++.... ...+...++|++|||||+| ||+.|+--+
T Consensus 158 fPtpe~la~~~~e~L~~~g~g~Ra~~I~~~A--~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~----TA~~ill~~ 231 (290)
T 3i0w_A 158 FPTVDKLHEFTEKDFEECTAGFRAKYLKDTV--DRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQ----VADCIMLFS 231 (290)
T ss_dssp CCCHHHHTTCCHHHHHHTTCGGGHHHHHHHH--HHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHH----HHHHHHHHH
T ss_pred CCcHHHHHCCCHHHHHHcCCchHHHHHHHHH--HHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHH----HHHHHHHHh
Confidence 4567889999999998643345777777777 44444321 2345566889999999996 999999877
Q ss_pred CCCC----CCCCccccccccccC----ChHHHHhhhcC--cccccccccccccCc
Q psy12564 645 FFTV----EPIPDSNLYNEWEYR----PPKRKKASRKN--VFSFKLNEIHVGTGK 689 (1033)
Q Consensus 645 f~~~----~p~HVhRIsNRwG~v----P~ktEkAL~k~--~~w~~in~lLV~~Gq 689 (1033)
|..+ +|.||+|+.+|+|.. |.+.+..+++. ||+.-....|..+|+
T Consensus 232 lg~pd~fpvD~~v~r~~~rl~~~~~~~~~~i~~~~~~~~~p~~~~A~~~Lw~~~R 286 (290)
T 3i0w_A 232 MQKYSAFPVDTWVKKAMMSLYVAPDVSLKKIRDFGREKFGSLSGFAQQYLFYYAR 286 (290)
T ss_dssp HCCTTCCCCCHHHHHHHHHHTSCTTCCHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred CCCCCcceecHHHHHHHHHhcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHhhh
Confidence 6554 577999999999886 33444444343 566666666655554
No 46
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=97.54 E-value=2.4e-06 Score=89.32 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=60.6
Q ss_pred CcccccccCCHHHHHHH-hhcCcchheeccccceeecccc-ccc-c---C--CchhhhhhcccccccCCCCcccchhccc
Q psy12564 573 LPAHKMSLAPERKIAQF-NNRNKLVLLHTKTTHVKTVPSE-NVQ-N---T--KGKFELLKEIKFERTGSEDTSEDVEESG 644 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~-~~r~ka~~~~~ka~~~~~v~~~-~~e-v---~--~g~eeLlklpGVGrk~~~~TAn~V~~~~ 644 (1033)
|.++.+..+++++|..+ .-++||+.|+..| ..++..+ ..+ + | ...++|++|||||+| ||+.|+.-+
T Consensus 85 Ptp~~la~~~~e~Lr~~G~~~~KA~~I~~~A--~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~k----TA~~ill~a 158 (233)
T 2h56_A 85 EKPEQLYRVSDEALRQAGVSKRKIEYIRHVC--EHVESGRLDFTELEGAEATTVIEKLTAIKGIGQW----TAEMFMMFS 158 (233)
T ss_dssp CCTHHHHTSCHHHHHHTTCCHHHHHHHHHHH--HHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHH----HHHHHHHHT
T ss_pred CCHHHHHcCCHHHHHHcCCCHHHHHHHHHHH--HHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHH----HHHHHHHHh
Confidence 45888999999998533 1233555555555 3444433 222 2 5 456889999999996 999999988
Q ss_pred CCCC----CCCCccccccccccC
Q psy12564 645 FFTV----EPIPDSNLYNEWEYR 663 (1033)
Q Consensus 645 f~~~----~p~HVhRIsNRwG~v 663 (1033)
|..+ ++-|+.|+..+|||.
T Consensus 159 lg~pd~~pvdd~~~r~~~~~~~~ 181 (233)
T 2h56_A 159 LGRLDVLSVGDVGLQRGAKWLYG 181 (233)
T ss_dssp TCCSCCCCTTCHHHHHHHHHHHS
T ss_pred CCCCCeeeCchHHHHHHHHHhcc
Confidence 7665 334999999999986
No 47
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=96.82 E-value=7e-05 Score=78.04 Aligned_cols=83 Identities=8% Similarity=-0.027 Sum_probs=58.5
Q ss_pred CcccccccCCHHHHHHHh-hcCcchheeccccceeecccc-----ccccCCc--hhhhhhcccccccCCCCcccchhccc
Q psy12564 573 LPAHKMSLAPERKIAQFN-NRNKLVLLHTKTTHVKTVPSE-----NVQNTKG--KFELLKEIKFERTGSEDTSEDVEESG 644 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~-~r~ka~~~~~ka~~~~~v~~~-----~~ev~~g--~eeLlklpGVGrk~~~~TAn~V~~~~ 644 (1033)
+.++.+..+++++|..+= -++||+.++..| ..++... ....|.. .++|++|||||+| ||+.|+--+
T Consensus 93 ptp~~la~~~~e~Lr~~G~~~~KA~~i~~lA--~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~----TA~~ill~~ 166 (225)
T 2yg9_A 93 VVPAALLKVSGDDLRGVGLSWAKVRTVQAAA--AAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRW----TAEMFLLFA 166 (225)
T ss_dssp SCHHHHTTSCHHHHHHTTCCHHHHHHHHHHH--HHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHH----HHHHHHHHT
T ss_pred CCHHHHHcCCHHHHHHCCCcHHHHHHHHHHH--HHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHH----HHHHHHHHh
Confidence 567889999999885432 134666666666 2332211 1112444 5889999999996 999999988
Q ss_pred CCCC----C-CCCccccccccc
Q psy12564 645 FFTV----E-PIPDSNLYNEWE 661 (1033)
Q Consensus 645 f~~~----~-p~HVhRIsNRwG 661 (1033)
|..+ + |.||+|+++++|
T Consensus 167 lg~~d~fpv~D~~v~r~~~~l~ 188 (225)
T 2yg9_A 167 LARPDVFSSGDLALRQGVERLY 188 (225)
T ss_dssp SCCSCCCCTTCHHHHHHHHHHS
T ss_pred CCCCCeeeCccHHHHHHHHHhC
Confidence 7655 3 679999999988
No 48
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=96.77 E-value=6e-05 Score=79.05 Aligned_cols=79 Identities=13% Similarity=-0.034 Sum_probs=56.6
Q ss_pred CCcccccccCCHHHHHHHhhcCcchheeccccceeeccccc--cccC-----------CchhhhhhcccccccCCCCccc
Q psy12564 572 VLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSEN--VQNT-----------KGKFELLKEIKFERTGSEDTSE 638 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~~~r~ka~~~~~ka~~~~~v~~~~--~ev~-----------~g~eeLlklpGVGrk~~~~TAn 638 (1033)
.|.++.+..+++++|.. +++...||++++-+.+.. +++| ...++|++|||||++ ||+
T Consensus 95 fPtpe~la~~~~e~Lr~------~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~----TA~ 164 (232)
T 4b21_A 95 FPTPKQIMETDVETLHE------CGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRW----TIE 164 (232)
T ss_dssp CCCHHHHHTSCHHHHHT------TTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHH----HHH
T ss_pred CCCHHHHHcCCHHHHHH------cCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHH----HHH
Confidence 56688899999998752 455555554444333322 3343 245789999999996 999
Q ss_pred chhcccCCCC----C-CCCcccccccc
Q psy12564 639 DVEESGFFTV----E-PIPDSNLYNEW 660 (1033)
Q Consensus 639 ~V~~~~f~~~----~-p~HVhRIsNRw 660 (1033)
.|+--+|..+ + |.||.|+++|+
T Consensus 165 ~ill~alg~pd~fpv~D~~v~r~~~rl 191 (232)
T 4b21_A 165 MYSIFTLGRLDIMPADDSTLKNEAKEF 191 (232)
T ss_dssp HHHHHTSCCSSCCCTTCHHHHHHHHHH
T ss_pred HHHHHhCCCCCeeeCccHHHHHHHHHH
Confidence 9999987765 2 67999999997
No 49
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=96.12 E-value=0.00045 Score=73.83 Aligned_cols=93 Identities=8% Similarity=-0.026 Sum_probs=64.7
Q ss_pred CcccccccCCHHHHHHHhh-cCcchheeccccceeeccc-cccccCCc----hhhhhhcccccccCCCCcccchhcccCC
Q psy12564 573 LPAHKMSLAPERKIAQFNN-RNKLVLLHTKTTHVKTVPS-ENVQNTKG----KFELLKEIKFERTGSEDTSEDVEESGFF 646 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~~~-r~ka~~~~~ka~~~~~v~~-~~~ev~~g----~eeLlklpGVGrk~~~~TAn~V~~~~f~ 646 (1033)
|-++.+..+++++|..+=- ++||+.++..| ..++.. +..+.+.. .++|++|||||+| ||+.|+--+|.
T Consensus 156 Ptp~~la~~~~~~Lr~~G~~~~ra~~i~~~A--~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~----TA~~ill~~lg 229 (282)
T 1mpg_A 156 PTPQRLAAADPQALKALGMPLKRAEALIHLA--NAALEGTLPMTIPGDVEQAMKTLQTFPGIGRW----TANYFALRGWQ 229 (282)
T ss_dssp CCHHHHHTCCHHHHHHTTSCHHHHHHHHHHH--HHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHH----HHHHHHHHHSC
T ss_pred CCHHHHHcCCHHHHHHcCCCHHHHHHHHHHH--HHHHcCCCCccccCCHHHHHHHHhcCCCcCHH----HHHHHHHHhCC
Confidence 4488999999999966533 57888888888 455544 55565543 5889999999996 99999999877
Q ss_pred CC--CC--CCccccccccccC-ChHHHHhhhc
Q psy12564 647 TV--EP--IPDSNLYNEWEYR-PPKRKKASRK 673 (1033)
Q Consensus 647 ~~--~p--~HVhRIsNRwG~v-P~ktEkAL~k 673 (1033)
.+ .| -|+.| ++++-. |.+.+..++.
T Consensus 230 ~~d~~pvdd~~~r--~~l~~~~~~~~~~~~~~ 259 (282)
T 1mpg_A 230 AKDVFLPDDYLIK--QRFPGMTPAQIRRYAER 259 (282)
T ss_dssp CSSCCCTTCHHHH--HHSTTCCHHHHHHHHGG
T ss_pred CCCcCccccHHHH--HHhccCCHHHHHHHHHH
Confidence 66 22 24433 665433 6666655544
No 50
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=95.78 E-value=0.0004 Score=74.78 Aligned_cols=82 Identities=11% Similarity=-0.103 Sum_probs=54.4
Q ss_pred CcccccccCCHHHHHHH-hhcCcchheeccccceeeccccc--cccCCc--hhhhhhcccccccCCCCcccchhcccCCC
Q psy12564 573 LPAHKMSLAPERKIAQF-NNRNKLVLLHTKTTHVKTVPSEN--VQNTKG--KFELLKEIKFERTGSEDTSEDVEESGFFT 647 (1033)
Q Consensus 573 ~~~~~~~~~~e~~i~~~-~~r~ka~~~~~ka~~~~~v~~~~--~ev~~g--~eeLlklpGVGrk~~~~TAn~V~~~~f~~ 647 (1033)
|.++.+..+++++|..+ .-++||+.|+..|+- ..+. .+.|.. .++|++|||||+| ||+.|+--+|.
T Consensus 162 Ptp~~la~~~~~~Lr~~G~~~rKa~~i~~~A~~----g~l~~l~~~~~~e~~~~L~~lpGIG~~----TA~~ill~~lg- 232 (295)
T 2jhn_A 162 PTQEAILKAGVEGLRECGLSRRKAELIVEIAKE----ENLEELKEWGEEEAYEYLTSFKGIGRW----TAELVLSIALG- 232 (295)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC----SSGGGGGGSCHHHHHHHHHTSTTCCHH----HHHHHHHHTTC-
T ss_pred CCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHC----CCHhhhhcCCHHHHHHHHhcCCCcCHH----HHHHHHHHccC-
Confidence 44788888888887533 223355555555532 1222 134443 5889999999996 99999998877
Q ss_pred C----C-CCCcccccccc-ccC
Q psy12564 648 V----E-PIPDSNLYNEW-EYR 663 (1033)
Q Consensus 648 ~----~-p~HVhRIsNRw-G~v 663 (1033)
+ + +.|+.|+.+++ |+.
T Consensus 233 ~d~fpvdD~~~rr~~~~~~g~~ 254 (295)
T 2jhn_A 233 KNVFPADDLGVRRAVSRLYFNG 254 (295)
T ss_dssp CCCCCTTCHHHHHHHHHHHSTT
T ss_pred CCcccchHHHHHHHHHHHhcCC
Confidence 5 1 33667799987 663
No 51
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=95.18 E-value=0.00095 Score=69.74 Aligned_cols=80 Identities=11% Similarity=-0.073 Sum_probs=54.5
Q ss_pred CCcccccccCCHHHHHHH-hhcCcchheeccccceeeccccccccCCc-----------hhhhhhcccccccCCCCcccc
Q psy12564 572 VLPAHKMSLAPERKIAQF-NNRNKLVLLHTKTTHVKTVPSENVQNTKG-----------KFELLKEIKFERTGSEDTSED 639 (1033)
Q Consensus 572 ~~~~~~~~~~~e~~i~~~-~~r~ka~~~~~ka~~~~~v~~~~~ev~~g-----------~eeLlklpGVGrk~~~~TAn~ 639 (1033)
.+-++.+..+++++|..+ ..+.||+.++..| ..++ .+++|+. .++|++|||||++ ||+.
T Consensus 84 fPtp~~la~~~~e~Lr~~G~~~rKa~~i~~~A--~~~~---~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~----TA~~ 154 (228)
T 3s6i_A 84 FPTPEEIRDMDFEIMRACGFSARKIDSLKSIA--EATI---SGLIPTKEEAERLSNEELIERLTQIKGIGRW----TVEM 154 (228)
T ss_dssp CCCHHHHHHSCHHHHHHHTCCHHHHHHHHHHH--HHHH---HTSSCCHHHHTTSCHHHHHHHHTTSTTCCHH----HHHH
T ss_pred CCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHH--HHHH---cCCCCChHHHhcCCHHHHHHHHHhCCCcCHH----HHHH
Confidence 456788888999888432 1223455555555 2222 3556543 5789999999996 9999
Q ss_pred hhcccCCCCC-----CCCcccccccc
Q psy12564 640 VEESGFFTVE-----PIPDSNLYNEW 660 (1033)
Q Consensus 640 V~~~~f~~~~-----p~HVhRIsNRw 660 (1033)
|+--+|..+. +.||.|+..++
T Consensus 155 ill~~lg~pd~fpvdD~~v~r~~~~~ 180 (228)
T 3s6i_A 155 LLIFSLNRDDVMPADDLSIRNGYRYL 180 (228)
T ss_dssp HHHHTSCCSSCCCTTCHHHHHHHHHH
T ss_pred HHHHhCCCCCEEecccHHHHHHHHHH
Confidence 9998876652 33788888885
No 52
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=25.95 E-value=4.5 Score=44.99 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=46.1
Q ss_pred ccccccCCCCCccccCCCcccccccCCHHHHHHHh----hcCcchheeccccceeeccccccccCCchhhhhhccccccc
Q psy12564 556 LTKYESQPSSTSTSTDVLPAHKMSLAPERKIAQFN----NRNKLVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERT 631 (1033)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~----~r~ka~~~~~ka~~~~~v~~~~~ev~~g~eeLlklpGVGrk 631 (1033)
+++|.-|.+++..++.--+++.+. +|+.+. |..|+..|+.-|.. |......+.. .++|.+|||||.+
T Consensus 2 ~~~yaC~r~~~~~~~N~~i~~~L~-----~ia~~~e~~g~~~r~~AYr~Aa~~---l~~l~~~i~~-~~~l~~lpGIG~~ 72 (360)
T 2ihm_A 2 MPAYACQRPSPLTHHNTLLSEALE-----TLAEAAGFEANEGRLLSFSRAASV---LKSLPCPVAS-LSQLHGLPYFGEH 72 (360)
T ss_dssp CCSSGGGSCBCSSCSCHHHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHH---HHHCSSCCCS-GGGGTTCTTCCHH
T ss_pred CCccccCCCCCCCCCcHHHHHHHH-----HHHHHHHHcCCcHHHHHHHHHHHH---HHhCCcccCC-HHHHhcCCCCCHH
Confidence 567888877776655444454443 333332 33566677766633 3344444433 4579999999996
Q ss_pred CCCCcccchhcc
Q psy12564 632 GSEDTSEDVEES 643 (1033)
Q Consensus 632 ~~~~TAn~V~~~ 643 (1033)
+|.++.+.
T Consensus 73 ----~A~kI~E~ 80 (360)
T 2ihm_A 73 ----STRVIQEL 80 (360)
T ss_dssp ----HHHHHHHH
T ss_pred ----HHHHHHHH
Confidence 88777654
Done!