Your job contains 1 sequence.
>psy12564
MDLFRLGNEVIVLVLDLLCVYCTLVSDNSSVPCLIQDNGAILSSKPPFPSLKYSYSTFRW
NETRPTTMFVTINRRHEYDFLYSDRECQVVRKKRVSPSREMHLKDILATFDSEDGAIVVD
ASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHRNRTES
HSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKK
SVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNIKIVRDL
DSEVINSEQTVDRTESSEDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLL
MNRKSTQPRHSISTSKNRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYE
KYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTTN
SESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVST
KIQLDHSVKKSQKQGLTKYESQPSSTSTSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHT
KTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEW
EYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFR
ILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQ
EIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFN
RGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSML
SVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN
FLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVE
GSDHAPQILYLNL
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12564
(1033 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 337 5.7e-46 2
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 364 1.2e-44 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 364 1.8e-42 3
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 333 4.5e-42 2
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 333 4.5e-42 2
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 331 5.8e-42 2
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 359 6.6e-42 2
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 374 8.7e-42 2
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 329 9.5e-42 2
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 329 9.5e-42 2
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 329 9.5e-42 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 332 4.0e-41 2
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 329 4.1e-41 2
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 329 4.1e-41 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 324 2.3e-40 2
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 329 2.5e-39 2
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 334 8.8e-34 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 213 2.3e-29 2
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 258 2.6e-26 2
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 177 6.0e-25 2
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 153 2.6e-18 2
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 237 2.3e-16 1
UNIPROTKB|F1PFY2 - symbol:APEX1 "Uncharacterized protein"... 195 2.5e-16 3
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 153 3.8e-14 2
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 153 4.1e-13 2
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 153 8.5e-13 2
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 174 6.1e-12 2
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 196 6.9e-12 1
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 167 7.1e-12 2
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 177 5.6e-11 1
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 144 7.0e-11 2
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 144 7.3e-11 2
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 167 5.9e-10 2
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 135 6.0e-10 2
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 178 6.3e-10 1
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 144 1.3e-09 2
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 122 1.5e-09 2
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 115 2.0e-09 3
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 115 2.0e-09 3
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 167 9.9e-09 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 118 1.1e-08 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 132 1.9e-08 2
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 162 3.5e-08 1
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 114 4.0e-08 2
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 114 4.0e-08 2
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 161 4.4e-08 1
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 160 5.7e-08 1
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 160 5.7e-08 1
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 158 1.2e-07 1
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 155 2.0e-07 1
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 153 3.7e-07 1
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 117 4.8e-07 2
TIGR_CMR|SPO_3425 - symbol:SPO_3425 "exodeoxyribonuclease... 99 9.5e-06 2
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 124 1.8e-05 2
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 129 2.9e-05 3
UNIPROTKB|G3V574 - symbol:APEX1 "DNA-(apurinic or apyrimi... 110 4.1e-05 1
UNIPROTKB|E1BQV7 - symbol:E1BQV7 "Uncharacterized protein... 112 8.4e-05 2
FB|FBgn0260965 - symbol:CG42588 species:7227 "Drosophila ... 99 9.4e-05 2
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 115 0.00020 2
FB|FBgn0037836 - symbol:CG14692 species:7227 "Drosophila ... 135 0.00023 1
DICTYBASE|DDB_G0293562 - symbol:DDB_G0293562 species:4468... 100 0.00034 2
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 125 0.00036 1
UNIPROTKB|E2RCQ3 - symbol:IWS1 "Uncharacterized protein" ... 116 0.00089 2
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 337 (123.7 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 71/162 (43%), Positives = 92/162 (56%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+T E+ F+LV Y P A L L + W+ R +L L+ KP+VL GDLNV
Sbjct: 147 EGRVITAEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNV 206
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRI-YTYWPYY-DRP 989
AH ID+ P N +GFT +ER F+ L+ GF D R LYP+ YT+W Y +
Sbjct: 207 AHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNAR 266
Query: 990 SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
SK GWRLDYF++S L L D +I GSDH P L+L
Sbjct: 267 SKNVGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFL 308
Score = 185 (70.2 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 52/152 (34%), Positives = 80/152 (52%)
Query: 679 KLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIG 738
K NE V G+ +N G ++ + + E PI+ + DP L K D N KI
Sbjct: 6 KKNEEGVD-GEADN--GTAAAKKEKKGKEPEAPIL-YEDPPEKLTSK---DGRAANMKIT 58
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE----CPE 794
SWNV+G+RAW + K+G ++R+ D ++ C+QE +C + LP PE
Sbjct: 59 SWNVDGLRAWVK------------KNGLDWVRKEDPDILCLQETKCAEKALPADITGMPE 106
Query: 795 GYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHG 825
H +W ++GY+GVA+L KT+P+ VT+G
Sbjct: 107 YPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYG 138
Score = 42 (19.8 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 492 RDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFI 529
+D + N+K S N++ L + KED D +
Sbjct: 48 KDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDIL 85
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 364 (133.2 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 67/163 (41%), Positives = 105/163 (64%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+T+E+E FY++ +Y P +K L L ++ W R ++K L+E K VV GDLNV
Sbjct: 89 EGRVITLEFEDFYIITLYTPNSKRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNV 148
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPY-YDRP 989
AH ID+ P +N GF+ +ER F+ L+ GF+D +R+LYP+ Y++W Y
Sbjct: 149 AHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLYPDQEGAYSWWSYRMGAR 208
Query: 990 SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+K GWRLDYF++S+++K ++ +I+ +V GSDH P L++N
Sbjct: 209 AKNIGWRLDYFVVSERMKDQITAAKINSEVMGSDHCPVELHIN 251
Score = 145 (56.1 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 31/95 (32%), Positives = 54/95 (56%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLPECPE 794
K SWNVNG+RA + K GF ++ + + ++FC+QEI+ ++ E
Sbjct: 2 KFISWNVNGLRA------------VIAKGGFLEYLEESNADIFCLQEIKLQEGQIDLNVE 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMK 829
GY+ +W ++GY+G A+ SK +P+ VT+G ++
Sbjct: 50 GYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLGIE 84
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 364 (133.2 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 78/186 (41%), Positives = 107/186 (57%)
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKL 904
HG+ + + P T A ++GRV+T+EY+QFY+VN Y P A L L ++
Sbjct: 169 HGTGVLT-KKKPNAITFGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRI 227
Query: 905 L-WNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD 963
W+ + +L+ LN KP++ GDLNVAH ID+ P TN +GFTI+ER FSNFL+
Sbjct: 228 KEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLE 287
Query: 964 LGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHG-DVE 1020
G++D +RH P YT+W Y SK GWRLDYF++SK+L + H V
Sbjct: 288 KGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVM 347
Query: 1021 GSDHAP 1026
GSDH P
Sbjct: 348 GSDHCP 353
Score = 99 (39.9 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-PLE-KLPECP 793
KI SWNV G + S ++K FT ++ + + +V C+QE + P K + P
Sbjct: 106 KIISWNVAGFK--SVLSKGFTE----------YVEKENPDVLCLQETKINPSNIKKDQMP 153
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSM 828
+GY + ++G+ G VL+K KP +T G +
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKKKPNAITFGIGI 188
Score = 47 (21.6 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 18/85 (21%), Positives = 37/85 (43%)
Query: 209 TSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEME 268
TS K +K D+ + +L EDG ++ E+ +E+E L+ + + +
Sbjct: 2 TSRTKKLKMDE-EEILK---KEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAK 57
Query: 269 ENNDDSNIKLHREVKSDVNEDQESN 293
+ K E + + E++E+N
Sbjct: 58 KAAAKKKSKDEDEDEEEKEEEEETN 82
Score = 44 (20.5 bits), Expect = 3.6e-42, Sum P(3) = 3.6e-42
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 621 ELLKEIKFERTGSEDTSEDVEE 642
E+LK+ T SE+ E+VEE
Sbjct: 14 EILKKEDGSETTSEEEKEEVEE 35
Score = 42 (19.8 bits), Expect = 5.9e-42, Sum P(3) = 5.9e-42
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 624 KEIKFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRK 673
+EI + GSE TSE+ +E VE + + + + P +K ++K
Sbjct: 13 EEILKKEDGSETTSEEEKEE----VEEEEEEDKKRKLVKKTPAKKAPAKK 58
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 333 (122.3 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 76/165 (46%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E+E F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 153 EGRVIVAEFESFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNV 212
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 213 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNA 272
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 273 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 317
Score = 152 (58.6 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 691 ENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQ 750
E + ++ +T E P++ + DP + K KI SWNV+G+RAW +
Sbjct: 21 ETKKSKGAAKKTEKEAAGEGPVL-YEDP---PDQKTSPSGKSATLKICSWNVDGLRAWIK 76
Query: 751 VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTR 805
K G ++++ ++ C+QE +C KLP E P H +W P +
Sbjct: 77 ------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDK 124
Query: 806 QGYAGVAVLSKTKPVRVTHG 825
+GY+GV +LS+ P++V++G
Sbjct: 125 EGYSGVGLLSRQCPLKVSYG 144
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 333 (122.3 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 76/165 (46%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E+E F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 153 EGRVIVAEFESFILVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGDLNV 212
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 213 AHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMMNA 272
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 273 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 317
Score = 152 (58.6 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 691 ENRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQ 750
E + ++ +T E P++ + DP + K KI SWNV+G+RAW +
Sbjct: 21 ETKKSKGAAKKTEKEAAGEGPVL-YEDP---PDQKTSASGKSATLKICSWNVDGLRAWIK 76
Query: 751 VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTR 805
K G ++++ ++ C+QE +C KLP E P H +W P +
Sbjct: 77 ------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSAPSDK 124
Query: 806 QGYAGVAVLSKTKPVRVTHG 825
+GY+GV +LS+ P++V++G
Sbjct: 125 EGYSGVGLLSRQCPLKVSYG 144
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 331 (121.6 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
Identities = 75/165 (45%), Positives = 90/165 (54%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L + L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLTALCDSKIRSKALGSDHCPITLYLAL 318
Score = 153 (58.9 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 359 (131.4 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 67/165 (40%), Positives = 102/165 (61%)
Query: 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLN 930
D GR++T EYE+FYL+NVY P + L L ++ W + ++K L+ +KPVV+ GD+N
Sbjct: 515 DVGRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMN 574
Query: 931 VAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHR-IYTYWPYY-DR 988
V+H ID+ P N +GFT +ER+ + L LGF+D RHLYP+ + YT+W Y +
Sbjct: 575 VSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFWTYMANA 634
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
++ GWRLDY L+S++ + + EI GSDH P ++ N+
Sbjct: 635 RARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDHCPITIFFNI 679
Score = 167 (63.8 bits), Expect = 6.6e-42, Sum P(2) = 6.6e-42
Identities = 40/99 (40%), Positives = 55/99 (55%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE- 791
+N KI SWNV G+RAW + KDG + + ++FC+QE +C ++LPE
Sbjct: 425 FNLKICSWNVAGLRAWLK------------KDGLQLIDLEEPDIFCLQETKCANDQLPEE 472
Query: 792 ---CPEGYHAFWF--PGTRQGYAGVAVLSKTKPVRVTHG 825
P GYH +W PG GYAGVA+ SK P+ V +G
Sbjct: 473 VTRLP-GYHPYWLCMPG---GYAGVAIYSKIMPIHVEYG 507
Score = 77 (32.2 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 56/248 (22%), Positives = 89/248 (35%)
Query: 547 SVKKSQKQGLTKYESQPSST----STSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHTKT 602
+ K K+G E P + S +V K + AP+++ + N V L KT
Sbjct: 244 AASKRAKKG-KMVEPSPETVGDFQSVQEEVESPPKTAAAPKKRAKKTTNGETAVELEPKT 302
Query: 603 THVKT---VPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIP-DSNLYN 658
T E + GK + K E+ E + P +
Sbjct: 303 KAKPTKQRAKKEGKEPAPGKKQKKSADKENGVVEEEAKPSTETKPAKGRKKAPVKAEDVE 362
Query: 659 EWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDP 718
+ E + K A + + K E V + G ++ + AE + +D D
Sbjct: 363 DIEEAAEESKPARGRKKAAAKAEEPDV-----DEESGSKTTKKAKKAETKTTVTLD-KDA 416
Query: 719 FRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFC 778
F + K +N KI SWNV G+RAW + + L I L++ D F N
Sbjct: 417 FALPADKE------FNLKICSWNVAGLRAWLKKDGL-QLIDLEEPDIFCLQETKCANDQL 469
Query: 779 IQEI-RCP 785
+E+ R P
Sbjct: 470 PEEVTRLP 477
Score = 40 (19.1 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 465 SPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKE 524
S SK T+K K T + ++ + NLK S N+ L+ I E
Sbjct: 393 SGSKTTKKAKKAETKTTVTLDKDAFALPADKEFNLKICSWNVAGLRAWLKKDGLQLIDLE 452
Query: 525 DKD 527
+ D
Sbjct: 453 EPD 455
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 374 (136.7 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
Identities = 79/178 (44%), Positives = 108/178 (60%)
Query: 861 TIQYADA-SGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLL-WNSFLRGHLKSL 917
+++Y SG D +GR++T E++ FYL+N Y P + + L LS ++ W+ L H+K L
Sbjct: 359 SVRYGTGLSGHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDRTLSNHIKEL 418
Query: 918 NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF-SNFLDLGFLDVHRHLYPN 976
+ KPVVL GDLN AH ID+ P N +GFTI+ER F +N LD GF+D R +P
Sbjct: 419 EKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPG 478
Query: 977 HRIYTYWPYYDRPSKM-KGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
YTYW Y K KGWRLDYFL+S+ + +++ D I D+ GSDH P L L L
Sbjct: 479 VVGYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
Score = 135 (52.6 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
Identities = 59/267 (22%), Positives = 123/267 (46%)
Query: 584 RKIAQFNNRNKLVLLHTKTTHVKT-VPSENVQNTKGKFELLKEIKFERTGSEDTSED-VE 641
RK+ K L+ T H+ + +P + ++ + + + IK + + E+ +ED
Sbjct: 110 RKLGVPVKGRKQELISTLRLHMDSNLPDQKETSSSTRSDSVT-IKRKISNREEPTEDECT 168
Query: 642 ESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNE 701
S + +E + + E + K S K + + + + G +I+++ S+
Sbjct: 169 NSEAYDIEH-GEKRVKQSTEKN--LKAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTIS 225
Query: 702 TSYAEVEEV-PIIDFNDPFRILEHKRRQ-DQYPWN---------------FKIGSWNVNG 744
+ + EE+ ++P+ +L HK+ Q D +N K+ +WNVNG
Sbjct: 226 SELLKTEEIISSPSQSEPWTVLAHKKPQKDWKAYNPKTMRPPPLPEGTKCVKVMTWNVNG 285
Query: 745 IRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP----EGY-HAF 799
+R + F+++ L Q++ F ++ C+QE + ++ + E +GY H+F
Sbjct: 286 LRGLLKFES-FSALQLAQRENF--------DILCLQETKLQVKDVEEIKKTLIDGYDHSF 336
Query: 800 WFPG-TRQGYAGVAVLSKTKPVRVTHG 825
W ++ GY+G A++S+ KP+ V +G
Sbjct: 337 WSCSVSKLGYSGTAIISRIKPLSVRYG 363
Score = 61 (26.5 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 479 TNSES--IQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSS 536
TNSE+ I+ ++ ST +NLK K + K+ + +L GK+ S+ SS
Sbjct: 168 TNSEAYDIEHGEKRVKQSTEKNLKAK---VSAKAIAKEQKSLMRTGKQQIQ--SKEETSS 222
Query: 537 RVSTKIQLDHSVKKSQKQ 554
+S+++ + S Q
Sbjct: 223 TISSELLKTEEIISSPSQ 240
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 329 (120.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 153 (58.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 329 (120.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 153 (58.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 329 (120.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 153 (58.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 332 (121.9 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 75/165 (45%), Positives = 90/165 (54%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ EY+ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEYDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S+ + L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSQSVLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 144 (55.7 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
Identities = 34/95 (35%), Positives = 55/95 (57%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP E E
Sbjct: 63 KICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPVELQE 110
Query: 795 --GY-HAFWF-PGTRQGYAGVAVLSKTKPVRVTHG 825
G H +W P ++GY+GV +LS+ P++V++G
Sbjct: 111 LSGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG 145
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 329 (120.9 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDTFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 147 (56.8 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----E 791
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP E
Sbjct: 63 KICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQE 110
Query: 792 CPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHG 825
P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 111 LPGLPHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG 145
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 329 (120.9 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA 273
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 274 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 318
Score = 147 (56.8 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
Identities = 38/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P + +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSYQYWSAPXXKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 324 (119.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 74/165 (44%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ LK L KP+VL GDLNV
Sbjct: 153 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGDLNV 212
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 213 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYPNTPYAYTFWTYMMNA 272
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+K GWRLDYFL+S L S L D +I GSDH P LYL L
Sbjct: 273 RAKNVGWRLDYFLLSHSLLSSLCDSKIRSKALGSDHCPITLYLAL 317
Score = 145 (56.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 32/95 (33%), Positives = 54/95 (56%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP----E 791
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP +
Sbjct: 62 KICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQD 109
Query: 792 CPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHG 825
P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 110 LPGLTHQYWSAPSDKEGYSGVGLLSRQCPLKVSYG 144
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 329 (120.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 75/165 (45%), Positives = 89/165 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 153 EGRVIVAEFDAFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNV 212
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRI-YTYWPYY-DR 988
AH ID+ P N +GFT QER F L + D RHLYPN YT+W Y +
Sbjct: 213 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNA 272
Query: 989 PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 273 RSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 317
Score = 130 (50.8 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP E E
Sbjct: 63 KICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPAELQE 110
Query: 795 --GY-HAFWF-PGTRQGYAGVAVLSKTKPVRVTHG 825
G H +W P ++GY+GV +LS+ + ++V++G
Sbjct: 111 LSGLPHQYWSAPSDKEGYSGVGLLSR-QCLKVSYG 144
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 334 (122.6 bits), Expect = 8.8e-34, Sum P(2) = 8.8e-34
Identities = 64/163 (39%), Positives = 99/163 (60%)
Query: 873 GRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVA 932
GR++ E+ +FY + Y P + L L + W L +K ++E KPV+ GDLNVA
Sbjct: 126 GRLIIAEFSKFYFIGAYVPNSGAKLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVA 185
Query: 933 HNHIDVALPLTNLGKS-GFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK 991
HN ID+ P +N K+ GFT QER +FS L+LGF D R ++P+ + Y++W Y S+
Sbjct: 186 HNEIDLKNPESNRNKTAGFTDQERGWFSEMLELGFTDTFRAMHPDEKKYSFWSYLAN-SR 244
Query: 992 MK--GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
K GWRLDY+++S ++ + + +I V GSDHAP ++ ++
Sbjct: 245 QKDVGWRLDYYVVSNRIMNKVKRSDIMSSVMGSDHAPVVMQID 287
Score = 72 (30.4 bits), Expect = 8.8e-34, Sum P(2) = 8.8e-34
Identities = 37/128 (28%), Positives = 53/128 (41%)
Query: 703 SYAEVEEVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQ 762
S + EE P F +D ++K WNV G+RA + + F + ++
Sbjct: 2 SKRKAEEAPAPKLASIFTKKVKPAEEDNNQKSWKFVCWNVAGLRACVKKSD-FKEVLAEE 60
Query: 763 KDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE---GYHAFWFPGTRQ--GYAGVAVLSKT 817
D L VF + E +C E PE E Y T + GYAGV +LSK
Sbjct: 61 PD---------L-VF-LGETKCK-EWPPEMEETFKNYTKTLVVSTEKNGGYAGVGLLSKC 108
Query: 818 KPVRVTHG 825
P++V G
Sbjct: 109 APMKVHKG 116
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 213 (80.0 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 47/106 (44%), Positives = 57/106 (53%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNV 931
+GRV+ E++ F LV Y P A L L + W+ R LK L KP+VL GDLNV
Sbjct: 154 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 213
Query: 932 AHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPN 976
AH ID+ P N +GFT QER F L + D RHLYPN
Sbjct: 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPN 259
Score = 153 (58.9 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 258 (95.9 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 59/161 (36%), Positives = 87/161 (54%)
Query: 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL-LWNSFLRGHLKSLNEIKPVVLAGDL 929
++GRV+ ++ L N+Y P ++D L+ K+ + FL K L + +++ GD+
Sbjct: 94 EEGRVLEHRFKNIALFNIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDV 153
Query: 930 NVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRI---YTYWPYY 986
N AH ID+ P N SGF ER + + L LGF+D R + N I Y++W Y
Sbjct: 154 NTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFREI--NGEIKEKYSWWSYR 211
Query: 987 DRPSKMK-GWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ + GWR+DYF ISK LK L + I D+ GSDHAP
Sbjct: 212 MKARERNVGWRIDYFFISKGLKDKLKNAFIRDDIFGSDHAP 252
Score = 78 (32.5 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ SWNVNG+RA + K+ ++ Q ++ QEI+ +K P+
Sbjct: 9 KLLSWNVNGLRA------------ICDKNALDWIAQEQIDFIGFQEIKAHEDKFPKKIYE 56
Query: 796 Y---HAFWFPGTRQGYAGVAVLSK-TKPVRVTHGFSMKVGGVVHTHGF 839
Y H ++ R GY+GV L V+ F + G V+ H F
Sbjct: 57 YPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLE-HRF 103
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 177 (67.4 bits), Expect = 6.0e-25, Sum P(2) = 6.0e-25
Identities = 41/91 (45%), Positives = 48/91 (52%)
Query: 897 LSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERN 956
L L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER
Sbjct: 150 LVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQ 209
Query: 957 YFSNFLD-LGFLDVHRHLYPNHRI-YTYWPY 985
F L + D RHLYPN YT+W Y
Sbjct: 210 GFGELLQAVPLADSFRHLYPNTPYAYTFWTY 240
Score = 153 (58.9 bits), Expect = 6.0e-25, Sum P(2) = 6.0e-25
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 153 (58.9 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP- 790
P KI SWNV+G+RAW + K G ++++ ++ C+QE +C KLP
Sbjct: 9 PATLKICSWNVDGLRAWIK------------KKGLDWVKEEAPDILCLQETKCSENKLPA 56
Query: 791 ---ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFS 827
E P H +W P ++GY+GV +LS+ P++V++G +
Sbjct: 57 ELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIA 97
Score = 108 (43.1 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 889 YAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALP 941
Y P A L L + W+ R LK L KP+VL GDLNVAH ID+ P
Sbjct: 98 YVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 150
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 237 (88.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 89/315 (28%), Positives = 152/315 (48%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQH-DLNVFCIQEIRCPLEKLPE--- 791
+I SWNVNGI+ N F +K+ + + Q +V C+QE++ + P+
Sbjct: 2 RILSWNVNGIQ-----NP-FNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYA 55
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDM 850
EG+ +++ FP R+GY+GV K K V + + G++ G + S +
Sbjct: 56 VVEGFDSYFTFPKIRKGYSGVGFYVK-KDVAIPVKAEEGITGILPVRG-QKYSYSEAPEH 113
Query: 851 ESGPSHPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSF 909
E P+ I A+ ID +GR + ++++ F L+ VY P + + L + +
Sbjct: 114 EKIGFFPK--DIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGE-NRLEYRRAFYKA 170
Query: 910 LRGHLKSLNEI--KPVVLAGDLNVAHNHIDVALPLTNLGKSGF-TIQE-RNYFSNFL--- 962
LR ++ L + + ++L GD+N+ N ID A + +S +I E R + + L
Sbjct: 171 LRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPS 230
Query: 963 DLGFL-DVHRHLYPNHR-IYTYWP--YYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGD 1018
LG L D+ R +P + ++T W RP+ G R+DY L + L + D +I +
Sbjct: 231 RLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNY-GTRIDYTLATPDLLPWVQDADIMAE 289
Query: 1019 VEGSDHAPQILYLNL 1033
V GSDH P +YL+L
Sbjct: 290 VMGSDHCP--VYLDL 302
>UNIPROTKB|F1PFY2 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0080111 "DNA demethylation" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0045739 "positive
regulation of DNA repair" evidence=IEA] [GO:0045454 "cell redox
homeostasis" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] InterPro:IPR004808
PROSITE:PS51435 GO:GO:0005739 GO:GO:0005813 GO:GO:0048471
GO:GO:0005730 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0080111 GO:GO:0003713
GO:GO:0090305 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0031490 GO:GO:0008081
GO:GO:0016890 GO:GO:0043488 EMBL:AAEX03000382
Ensembl:ENSCAFT00000035985 Uniprot:F1PFY2
Length = 284
Score = 195 (73.7 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 63/175 (36%), Positives = 77/175 (44%)
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
SHP + Y +G D G + +F L Y P L L V W+ L
Sbjct: 115 SHPCPLKVSYG--TG-DKGHDLEGRVTEFVLETAYVPNTGGSLGCL-VAQCWDGAFCKFL 170
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL-GFLDVHRHL 973
K L + L GDL+VAH I + P N +GFT QER F L L +L V
Sbjct: 171 KGLASHTSLGLCGDLSVAHEEIHLLYPKGNKQHAGFTRQERQGFGELLRLCHWLTVWGTS 230
Query: 974 YPN-HRIYTYWPYYDR-PSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
PN YT+W Y PS + GW LDYFL+S L L D + GSDH P
Sbjct: 231 TPNLGYAYTFWTYVRNVPSIIIGWHLDYFLLSHSLLP-LCDSKSCCRALGSDHCP 284
Score = 64 (27.6 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 780 QEIRCPLEKL---P-ECPEGYHAFW-FPGTRQGYAGVAVLSKTKPVRVTHG 825
+E +C KL P E PE H + ++GY GV +LS P++V++G
Sbjct: 75 EETKCSENKLSAEPQELPELSHQYRSVRSDKEGYRGVGLLSHPCPLKVSYG 125
Score = 39 (18.8 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 734 NFKIGSWNVNGIR 746
+ KI SWN +G++
Sbjct: 55 SLKICSWNADGLK 67
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 153 (58.9 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 23 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 66
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 67 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 126
Query: 824 HG 825
+G
Sbjct: 127 YG 128
Score = 68 (29.0 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
+GRV+ E++ F LV Y P A L L + W+
Sbjct: 137 EGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWD 172
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 153 (58.9 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 23 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 66
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 67 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 126
Query: 824 HG 825
+G
Sbjct: 127 YG 128
Score = 58 (25.5 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 872 DGRVMTVEYEQFYLVNVYAPAAKEDL 897
+GRV+ E++ F LV Y P A L
Sbjct: 137 EGRVIVAEFDSFVLVTAYVPNAGRGL 162
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 153 (58.9 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + DP + K P KI SWNV+G+RAW + K G +
Sbjct: 40 EGPAL-YEDP---PDQKTSPSGKPATLKICSWNVDGLRAWIK------------KKGLDW 83
Query: 769 MRQHDLNVFCIQEIRCPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP E P H +W P ++GY+GV +LS+ P++V+
Sbjct: 84 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 143
Query: 824 HG 825
+G
Sbjct: 144 YG 145
Score = 55 (24.4 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 872 DGRVMTVEYEQFYLVNVYAP 891
+GRV+ E++ F LV Y P
Sbjct: 154 EGRVIVAEFDSFVLVTAYVP 173
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 174 (66.3 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 50/158 (31%), Positives = 80/158 (50%)
Query: 885 LVNVYAPAAKEDLS-MLSVKLLWNSFL----RGHLKSLNEIKPVVLAGDLNVAHNHIDVA 939
L+++Y P A+ S K+ ++ L G+L + N+I ++L GD+N A IDV
Sbjct: 108 LISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYLLNNNDI--MLLGGDMNAAPEDIDVY 165
Query: 940 LPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRP-SKMKGWRLD 998
P+ G +GF I+ER+ L+LG D R YP + +++W Y + +G R+D
Sbjct: 166 DPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPTKQEFSWWDYRGGGLQRNEGMRID 225
Query: 999 YFLISKQLKSHLSDLEIHGDVEG----SDHAPQILYLN 1032
+ L S + HL D I ++ SDH P + LN
Sbjct: 226 HILASAEGMDHLLDCYILKELRHISRPSDHVPVVCVLN 263
Score = 53 (23.7 bits), Expect = 6.1e-12, Sum P(2) = 6.1e-12
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 736 KIGSWNVNGIRAWSQ-VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-----PLEKL 789
K+ +WNVN IR ++ V+ L S +L+V +QE++C PL
Sbjct: 8 KVATWNVNSIRQRAEAVSALLVS--------------ENLDVLLLQELKCQESDFPLHVF 53
Query: 790 PECPEGYHAFWFPGTRQGYAGVAVLSK 816
+ Y+ ++GY GVA+ S+
Sbjct: 54 NDL--SYNVIL--KCQKGYNGVAIASR 76
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 196 (74.1 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 84/321 (26%), Positives = 141/321 (43%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPE--- 791
++ SWN+NGIR + L + +R+ D ++ C+QE + + L E
Sbjct: 3 RVVSWNINGIRR--PLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLA 60
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F +R GY+GVA K PV G S + + G NE
Sbjct: 61 VVEGYNSYFSFSRSRSGYSGVATFCKDSVTPVAAEEGLSGQFATLSGHVGCYGNMNEFTQ 120
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAP-AAKEDLSMLSVKLL 905
+ +L + + + ++ T E ++ L+NVY P A+ + L+ K+
Sbjct: 121 E--------QLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTFKMR 172
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVA----LPL--TNLGKSGFT--IQERN 956
+ L+ ++L V++ GD+N AH+ ID L +LG+ +
Sbjct: 173 FYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLE 232
Query: 957 YFSNFLDLG-FLDVHRHLYPNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLK-SHLSD 1012
Y + +G F+D +R+ YP R +T W + G RLDY L ++ L L D
Sbjct: 233 YPAGS-HIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYILGNRDLIIDTLQD 291
Query: 1013 LEIHGDVEGSDHAPQILYLNL 1033
+ +V GSDH P LN+
Sbjct: 292 AFLLPEVMGSDHCPVGAVLNV 312
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 167 (63.8 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 55/198 (27%), Positives = 97/198 (48%)
Query: 773 DLNVFCIQEIRCPLEKLPE---CPEGYHAFW-FPGTRQGYAGVAVL---SKTKPVRVTHG 825
+ ++ IQE + + L + G+ ++ P ++GY+GVA+ SK P+R G
Sbjct: 6 EADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLPKFKKGYSGVAIYTRSSKCSPIRAEEG 65
Query: 826 FSMKVGGVVHTHGFNRGSNEHGSDMESG--PSHPELTTIQYADASGID-DGRVMTVEYEQ 882
+ G++ E D + G P +L+ I D + +D +GR M +E+
Sbjct: 66 IT----GILCPPNSTTKFRELSPDQQIGGYPRPDQLSDI--IDEATLDSEGRCMILEFPA 119
Query: 883 FYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVALP 941
F L+ VY+PA +++ + + ++ + +++L + K VVL GDLN+ N +D A
Sbjct: 120 FVLIGVYSPATRDE-TRTDFRQAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDTAGI 178
Query: 942 LTNLGKSGFTIQERNYFS 959
L L K TI E +FS
Sbjct: 179 LERLRKEEMTIDE--FFS 194
Score = 81 (33.6 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 968 DVHRHLYPNH-RIYTYWPYYD--RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
D+ R +P+ +YT W RP G R+DY L S +K D I + GSDH
Sbjct: 225 DLGREFHPDRIGMYTCWETRKNARPGNF-GSRIDYVLCSAGMKDWFIDANIQEGLLGSDH 283
Query: 1025 AP 1026
P
Sbjct: 284 CP 285
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 177 (67.4 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 56/237 (23%), Positives = 101/237 (42%)
Query: 800 WFPGTRQGYAGVAVLSKTKP-VRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPE 858
+F ++ A + L +TK + +T+G G H + + + + P+
Sbjct: 19 FFDWLKRQKADIVCLQETKACLEITNGDQFHPKGY-HCYYHDAEKSGYSGVGIYCREKPD 77
Query: 859 LTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLN 918
T + +GR + ++ + ++Y P+ +K F+ ++K L
Sbjct: 78 RVTTRLGWEHADKEGRYIQADFGSLSVASLYMPSGTTGEHRQKIKF---DFMDRYMKRLK 134
Query: 919 EI----KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN-FLDLGFLDVHRHL 973
I + ++ GD N+ H ID+ +N SG +ER + F +G +D R +
Sbjct: 135 NIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVGLVDAFRVV 194
Query: 974 YPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
YT+W R K GWR+DY +I+ LK+ + I+ D SDHAP I+
Sbjct: 195 NQKPDQYTWWSSRGRAWEKNVGWRIDYQVITSDLKNSVKSERIYKDKRFSDHAPLII 251
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 144 (55.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 52/148 (35%), Positives = 62/148 (41%)
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ LK KP+VL G+LNV H I + P N
Sbjct: 157 VITYVPNAGRSLVRLEYQQCWDEAFCKFLK-----KPLVLCGNLNVTHEEIYLCNPKGNK 211
Query: 946 GKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLIS 1003
+ FT QER F L + D RHLYPN T + +D P K W L Y
Sbjct: 212 KNADFTPQERQGFGELLQAVPLADNLRHLYPN----TVYGLHDGCPPKNISWHLAYSFFY 267
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
H D +I V SDH P L L
Sbjct: 268 L----HY-DSKIWSKVLDSDHCPITLCL 290
Score = 83 (34.3 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 732 PWNFKIGSWNVNG--IRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---- 785
P + K W + I +W +V L I QK G +++ ++ C+QE +C
Sbjct: 40 PPDQKTSQWPIRHTQISSW-EVGGLPACI---QKKGLDCVKEETPDILCLQETKCSKNKL 95
Query: 786 LEKLPECPEGYHAFWF-PGTRQGYAGVAVLS 815
L +L E P +W P + Y+GV +LS
Sbjct: 96 LAELQELPGLTRQYWSAPSDTEAYSGVGLLS 126
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 144 (55.7 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 52/148 (35%), Positives = 62/148 (41%)
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ LK KP+VL G+LNV H I + P N
Sbjct: 159 VITYVPNAGRSLVRLEYQQCWDEAFCKFLK-----KPLVLCGNLNVTHEEIYLCNPKGNK 213
Query: 946 GKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYFLIS 1003
+ FT QER F L + D RHLYPN T + +D P K W L Y
Sbjct: 214 KNADFTPQERQGFGELLQAVPLADNLRHLYPN----TVYGLHDGCPPKNISWHLAYSFFY 269
Query: 1004 KQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
H D +I V SDH P L L
Sbjct: 270 L----HY-DSKIWSKVLDSDHCPITLCL 292
Score = 83 (34.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 732 PWNFKIGSWNVNG--IRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---- 785
P + K W + I +W +V L I QK G +++ ++ C+QE +C
Sbjct: 42 PPDQKTSQWPIRHTQISSW-EVGGLPACI---QKKGLDCVKEETPDILCLQETKCSKNKL 97
Query: 786 LEKLPECPEGYHAFWF-PGTRQGYAGVAVLS 815
L +L E P +W P + Y+GV +LS
Sbjct: 98 LAELQELPGLTRQYWSAPSDTEAYSGVGLLS 128
Score = 41 (19.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 488 VSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVST 540
+S+ R T + KS KS+ A+ T+ G D+ P++ +++S+
Sbjct: 7 LSSRRCQTQDREQPKSEPETKKSKGAAKKTVLHEGPPDQKTSQWPIRHTQISS 59
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 167 (63.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 52/156 (33%), Positives = 74/156 (47%)
Query: 885 LVNVYAPAAKE-DLSMLSVKLLWNSFLRGHLKSLNEIKPV-VLAGDLNVAHNHIDVALPL 942
+ ++Y P + D KL + LR H SL + + + +L GD NVA IDV P
Sbjct: 124 IASIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNVAPYPIDVYDPE 183
Query: 943 TNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFL 1001
GK F ER F + L+LGF D R L + +++W Y + +G R+D L
Sbjct: 184 VMDGKLCFHKSEREKFRSILNLGFTDSFRVLNDYEKKFSWWNYKAGAWQQNRGLRIDNLL 243
Query: 1002 ISKQLKSHLSDLEIHGDVEG----SDHAPQILYLNL 1033
+S Q L IH + G SDHAP + L+L
Sbjct: 244 LSPQATDKLLSCVIHDKLRGLDTPSDHAPVVCELDL 279
Score = 46 (21.3 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 736 KIGSWNVNGIR 746
KI +WNVN IR
Sbjct: 4 KIATWNVNSIR 14
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 135 (52.6 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 50/147 (34%), Positives = 61/147 (41%)
Query: 886 VNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNL 945
V Y P A L L + W+ LK KP+VL G+LNV H I + P N
Sbjct: 140 VITYVPNAGRSLVRLEYQQCWDEAFCKFLK-----KPLVLCGNLNVTHEEIYLCNPKGNK 194
Query: 946 GKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISK 1004
+ FT QER F L + D RHLYPN +Y + Y M FL+S
Sbjct: 195 KNADFTPQERQGFGELLQAVPLADNLRHLYPN-TVYADFLDY----MMDAHPRTSFLLSY 249
Query: 1005 QLKSHLSDLEIHGDVEGSDHAPQILYL 1031
D +I V SDH P L L
Sbjct: 250 SFFYLHYDSKIWSKVLDSDHCPITLCL 276
Score = 83 (34.3 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 732 PWNFKIGSWNVNG--IRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP---- 785
P + K W + I +W +V L I QK G +++ ++ C+QE +C
Sbjct: 23 PPDQKTSQWPIRHTQISSW-EVGGLPACI---QKKGLDCVKEETPDILCLQETKCSKNKL 78
Query: 786 LEKLPECPEGYHAFWF-PGTRQGYAGVAVLS 815
L +L E P +W P + Y+GV +LS
Sbjct: 79 LAELQELPGLTRQYWSAPSDTEAYSGVGLLS 109
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 178 (67.7 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 88/320 (27%), Positives = 138/320 (43%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPE--- 791
++ SWN+NGIR S + L + + D ++ C+QE + + L E
Sbjct: 3 RVVSWNINGIR--SPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLA 60
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F +R GY+GVA K PV G S GV T + G +G+
Sbjct: 61 IVEGYNSYFSFSRSRSGYSGVATFCKDSATPVAAEEGLS----GVFATLNGDIGC--YGN 114
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKLL 905
E + EL + + + ++ T+E ++ L+NVY P A L+ K+
Sbjct: 115 MDEF--TQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMR 172
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDV--ALPLTNLGKSGFTIQERNYFSNFL 962
+ L+ ++L V++ GDLN AH ID A L + SN
Sbjct: 173 FYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPG 232
Query: 963 D-----LG-FLDVHRHLYPNH-RIYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSDLE 1014
D +G F+D +R+L+P R +T W + G RLDY L + L
Sbjct: 233 DEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTFQAS 292
Query: 1015 -IHGDVEGSDHAPQILYLNL 1033
+ +V GSDH P LN+
Sbjct: 293 FLLPEVMGSDHCPVGAVLNV 312
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 144 (55.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 46/150 (30%), Positives = 72/150 (48%)
Query: 885 LVNVYAPAAKE-DLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAG-DLNVAHNHIDVALPL 942
+V+VY P +E + KL + L+ L ++ + + ++AG D NVA IDV P
Sbjct: 117 VVSVYVPNGQEVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPK 176
Query: 943 TNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP-NHRIYTYWPYYDRP-SKMKGWRLDYF 1000
G+ F I ER F L+ G +D+ R + + +++W Y + +G R+D
Sbjct: 177 ALDGRLCFHILERAKFREILNNGIVDIFRTFVGIDRKEFSWWNYREGGWQNNRGLRIDAL 236
Query: 1001 LISKQLKSHLSDLEIHGDVEG----SDHAP 1026
L S Q+ + D I V G SDHAP
Sbjct: 237 LSSPQIADKVLDCSILSKVRGWDTPSDHAP 266
Score = 69 (29.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--ECP 793
++ +WNVN IR ++ L S + +H ++V +QEI+C E+ P E
Sbjct: 3 RVITWNVNSIR--KRIEHLC-----------SVLSEHSIDVAMLQEIKCTNEQFPFVELE 49
Query: 794 E-GYHAFWFPGTRQGYAGVAVLSKTKPVRV 822
GY + G ++ GVA++SK V V
Sbjct: 50 ALGYKCY-VHG-QKSRNGVAIISKLPVVEV 77
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 122 (48.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYFSNFLDLGF 966
H N+ + + + GD+N++ +D+ + N GK F +ER + D G
Sbjct: 138 HANHSND-EDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKTLQDWGL 196
Query: 967 LDVHRHLYPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHL--SDL--EIHGDVE 1020
+D R L+P+ Y+++ Y + +G R+D L + L + L SD+ E+ G +
Sbjct: 197 VDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYELRGIDK 256
Query: 1021 GSDHAP 1026
SDHAP
Sbjct: 257 PSDHAP 262
Score = 93 (37.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 32/94 (34%), Positives = 50/94 (53%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKD--GFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
KI S+N+NG+R S++++L I Q D G + HD F + E+ E +
Sbjct: 2 KIVSFNINGLR--SRLHQLQALIDSHQPDIIGLQETKVHD-EAFPLAEV----EAM---- 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFS 827
GYH + G + + GVA+LSK P++V GF+
Sbjct: 51 -GYHVHYHGG--KAHYGVAMLSKVAPLKVQKGFA 81
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 115 (45.5 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 39/118 (33%), Positives = 59/118 (50%)
Query: 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL-NEI-KPVVLAGD 928
D+GRV+ VE+ F+L++ Y P D + L++ L+ + L NE KP+V GD
Sbjct: 415 DEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTGD 474
Query: 929 LNVAHNHIDVA------------LPLTNLGKSGFTIQERNYFSNFLDLGFL-DVHRHL 973
LN+A ID++ +P +G+ G T ER F L G L D +R+L
Sbjct: 475 LNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYRYL 532
Score = 97 (39.2 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 976 NHRIYTY-WPYYDRPSKMKGWRLDYFLISKQL-----KSHLSDLEI-HGDVEGSDHAPQI 1028
N IYT+ P+ S K R+D+F++SK+ K H+ + H + GSDH P I
Sbjct: 552 NDNIYTWRCPFLLGKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVI 611
Query: 1029 LYL 1031
LYL
Sbjct: 612 LYL 614
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 64/288 (22%), Positives = 114/288 (39%)
Query: 521 IGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTST--STDVLP-AHK 577
I K D + +S + KI+ +K S +Q + + SS+S S + P +HK
Sbjct: 51 IKKRDNHALDTQ-ESQELVNKIK---EIKNSDEQNNSNNNNNNSSSSNFCSNNNSPFSHK 106
Query: 578 MS-LAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNT-KGKFELLKE----IKFERT 631
+ L + ++ +N L T+ + + N K E +KE + T
Sbjct: 107 ETKLMVKEEVPNSIVKNILNNNSCATSIINNKFYTQINNIIPVKPEAMKEENINVSTVNT 166
Query: 632 GSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIE 691
++ + E E S +F E Y++ ++ + + + K + +I + I
Sbjct: 167 ENDISKEKKENSHYFCDEIKVMKKEYSKDDFVTDVKLEMNDKEEEEEEKQKIGQESTHIN 226
Query: 692 NRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKR--RQDQY-PWNFK-----IGSWNVN 743
++ D+ NE + + V E D L +KR +D N K I +WN+N
Sbjct: 227 IKVEKDTFNECNNSNVNEKKRNRSVDIHNELSNKRILTEDVVVKCNIKNDVKIIVTWNMN 286
Query: 744 GIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
I + NK F+ +F + +V C QE+R P L E
Sbjct: 287 SITVRYK-NKKKWDEFM------NFFNNLNADVLCFQEVRLPAMNLSE 327
Score = 58 (25.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 230 EDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDD--SNIKLHREVKSDVN 287
E+ V + +IS+EK+ E+ V + E + DD +++KL K +
Sbjct: 156 EENINVSTVNTENDISKEKKENSHYFC---DEIKVMKKEYSKDDFVTDVKLEMNDKEEEE 212
Query: 288 ED-----QES---NIKIVRDLDSEVINSEQTVDRTESSEDKYSK 323
E+ QES NIK+ +D +E NS + S D +++
Sbjct: 213 EEKQKIGQESTHINIKVEKDTFNECNNSNVNEKKRNRSVDIHNE 256
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 115 (45.5 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 39/118 (33%), Positives = 59/118 (50%)
Query: 871 DDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSL-NEI-KPVVLAGD 928
D+GRV+ VE+ F+L++ Y P D + L++ L+ + L NE KP+V GD
Sbjct: 415 DEGRVILVEFSNFFLLSTYTPNNGFDHVKFERRRLFDEQLQKFVTILRNEKQKPLVWTGD 474
Query: 929 LNVAHNHIDVA------------LPLTNLGKSGFTIQERNYFSNFLDLGFL-DVHRHL 973
LN+A ID++ +P +G+ G T ER F L G L D +R+L
Sbjct: 475 LNIAPEDIDLSHPAEFRRMKKGNVPKEFIGQPGCTDFERKNFQKILTAGNLVDSYRYL 532
Score = 97 (39.2 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 976 NHRIYTY-WPYYDRPSKMKGWRLDYFLISKQL-----KSHLSDLEI-HGDVEGSDHAPQI 1028
N IYT+ P+ S K R+D+F++SK+ K H+ + H + GSDH P I
Sbjct: 552 NDNIYTWRCPFLLGKSCNKAMRIDHFIVSKEFLNRINKIHIQGFSVFHNNFYGSDHCPVI 611
Query: 1029 LYL 1031
LYL
Sbjct: 612 LYL 614
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 64/288 (22%), Positives = 114/288 (39%)
Query: 521 IGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTST--STDVLP-AHK 577
I K D + +S + KI+ +K S +Q + + SS+S S + P +HK
Sbjct: 51 IKKRDNHALDTQ-ESQELVNKIK---EIKNSDEQNNSNNNNNNSSSSNFCSNNNSPFSHK 106
Query: 578 MS-LAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNT-KGKFELLKE----IKFERT 631
+ L + ++ +N L T+ + + N K E +KE + T
Sbjct: 107 ETKLMVKEEVPNSIVKNILNNNSCATSIINNKFYTQINNIIPVKPEAMKEENINVSTVNT 166
Query: 632 GSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFSFKLNEIHVGTGKIE 691
++ + E E S +F E Y++ ++ + + + K + +I + I
Sbjct: 167 ENDISKEKKENSHYFCDEIKVMKKEYSKDDFVTDVKLEMNDKEEEEEEKQKIGQESTHIN 226
Query: 692 NRLGCDSSNETSYAEVEEVPIIDFNDPFRILEHKR--RQDQY-PWNFK-----IGSWNVN 743
++ D+ NE + + V E D L +KR +D N K I +WN+N
Sbjct: 227 IKVEKDTFNECNNSNVNEKKRNRSVDIHNELSNKRILTEDVVVKCNIKNDVKIIVTWNMN 286
Query: 744 GIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE 791
I + NK F+ +F + +V C QE+R P L E
Sbjct: 287 SITVRYK-NKKKWDEFM------NFFNNLNADVLCFQEVRLPAMNLSE 327
Score = 58 (25.5 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 230 EDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDD--SNIKLHREVKSDVN 287
E+ V + +IS+EK+ E+ V + E + DD +++KL K +
Sbjct: 156 EENINVSTVNTENDISKEKKENSHYFC---DEIKVMKKEYSKDDFVTDVKLEMNDKEEEE 212
Query: 288 ED-----QES---NIKIVRDLDSEVINSEQTVDRTESSEDKYSK 323
E+ QES NIK+ +D +E NS + S D +++
Sbjct: 213 EEKQKIGQESTHINIKVEKDTFNECNNSNVNEKKRNRSVDIHNE 256
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 167 (63.8 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 83/320 (25%), Positives = 136/320 (42%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
++ SWN+NGIR+ Q + + + D ++ C+QE + + L E P
Sbjct: 3 RVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTE-PLA 61
Query: 794 --EGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F R GY+GVA K PV G S G++ T N N +G+
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLS----GLLAT--LNGDVNCYGN 115
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYL--VNVYAPAAKEDL-SMLSVKLL 905
E + EL + + + ++ T + ++ L +NVY P A L+ K+
Sbjct: 116 MDEF--TQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLTFKMR 173
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDV--ALPLTNLGKSGFTIQERNYFSNFL 962
+ L+ ++L V++ GDLN AH ID A+ L + SN
Sbjct: 174 FYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLR 233
Query: 963 -----DLG-FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQL-KSHLSDL 1013
+G F+D +R+ P + +T W + G R+DY L + L
Sbjct: 234 CQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALVMDTFQSS 293
Query: 1014 EIHGDVEGSDHAPQILYLNL 1033
+ +V GSDH P LN+
Sbjct: 294 FVLPEVMGSDHCPVGAVLNV 313
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 118 (46.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 42/159 (26%), Positives = 69/159 (43%)
Query: 885 LVNVYAPA--AKEDLSMLSVKLLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALP 941
++N Y P +++ K + L+ +L++ L PV++ GD+N++ +D+ +
Sbjct: 105 VINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIG 164
Query: 942 LTN------LGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSK---- 991
N GK F +ER + + G +D RH P W +D SK
Sbjct: 165 EENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSW--FDYRSKGFDD 222
Query: 992 MKGWRLDYFLISKQLKSHLS----DLEIHGDVEGSDHAP 1026
+G R+D L S+ L D EI + SDHAP
Sbjct: 223 NRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAP 261
Score = 89 (36.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKD--GFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
K S+N+NG+RA + ++L + Q D G + HD ++F ++E+ KL
Sbjct: 2 KFVSFNINGLRA--RPHQLEAIVEKHQPDVIGLQETKVHD-DMFPLEEVA----KL---- 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGF 826
GY+ F+ G ++G+ GVA+L+K P+ V GF
Sbjct: 51 -GYNVFYH-G-QKGHYGVALLTKETPIAVRRGF 80
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 132 (51.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 52/231 (22%), Positives = 109/231 (47%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
F+I +WN G+ +S T F + F + + ++ +QE + + L +
Sbjct: 3 FRITTWN--GLNPFSYEPWRSTRTF---ESMFDIL---EADIVVVQETKIQRKDLRDDMV 54
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSKTK---PVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
G+ ++ P ++GY+GVA+ ++ P+R G + G + +
Sbjct: 55 LVPGWDCYFSLPKVKKGYSGVAIYTRNATCAPIRAEEGLT----GTLCPPNSLVSFRDLP 110
Query: 848 SDMESG--PSHPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKL 904
D + G P+ +L+ ++ DA +D +GR + +E+ F L+ +Y PA +++ S + +
Sbjct: 111 EDQQIGGYPTIEQLSKLKL-DAETLDSEGRCVILEFPAFVLIGLYCPANRDE-SRDAFRQ 168
Query: 905 LWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE 954
+ + +++L + K V + GD+N++ ID A N+ K G T ++
Sbjct: 169 NFLDLMDARVRNLVALGKRVFVTGDINISRGEIDAAHAAENI-KKGVTTED 218
Score = 84 (34.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 968 DVHRHLYPNHR-IYTYWPYY--DRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
D+ R +P + +YT W RP G R+DY L S +K D I + GSDH
Sbjct: 253 DICRSFHPKRKGMYTCWEQRINARPGNY-GSRIDYVLCSLDMKDWFFDSNIQEGLMGSDH 311
Query: 1025 AP 1026
P
Sbjct: 312 CP 313
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 162 (62.1 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 86/317 (27%), Positives = 135/317 (42%)
Query: 736 KIGSWNVNGIRAWSQVNKLFT--SIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
++ SWN+NGIR+ Q ++ S G + + D ++ C+QE + E+
Sbjct: 3 RVVSWNINGIRSPLQ-GMVYEEPSNCAAMAMG-RILDKLDADIVCLQETKVTSERXXXXL 60
Query: 792 -CPEGYHAF-WFPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
EGY+++ +F R GY+GVA K P+ G S G++ TH + G +G
Sbjct: 61 AIIEGYNSYSFFSRNRSGYSGVATFCKDSATPMAAEEGLS----GLLATHNGDVGC--YG 114
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKL 904
+ E + EL + + + ++ T E +Q L+NVY P A L+ K+
Sbjct: 115 NMDEF--TQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKM 172
Query: 905 LWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE-RNYFSNFL 962
+ L+ ++L V++ GDLN AH ID NL F R + L
Sbjct: 173 RFYRLLQIRAEALLAAGSHVIILGDLNTAHCPID-HWDAVNL--ECFEEDPGRKWMDGLL 229
Query: 963 -DLG---------FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLK-SH 1009
+LG F+D +R P +T W + G RLDY L + L
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVLGDRTLVIDT 289
Query: 1010 LSDLEIHGDVEGSDHAP 1026
D + +V GSDH P
Sbjct: 290 FQDSFLLPEVMGSDHCP 306
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 114 (45.2 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 37/131 (28%), Positives = 64/131 (48%)
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYFSNF 961
++LR H +S +E +V+ GD+N++ +D+ + N GK F +ER +
Sbjct: 135 TYLREH-RSNSE--RLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEEREWLQTL 191
Query: 962 LDLGFLDVHRHLYPN-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLS----DLEI 1015
LD G +D R L+P+ ++++ Y R + +G R+D L + L D E+
Sbjct: 192 LDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEAGIDYEL 251
Query: 1016 HGDVEGSDHAP 1026
+ SDHAP
Sbjct: 252 RAIDKPSDHAP 262
Score = 88 (36.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKD--GFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
K+ S+N+NG+RA ++++L I Q D G ++ HD F QE+ E +
Sbjct: 2 KVISFNINGLRA--RLHQLQALIDKHQPDVIGLQEIKVHD-EAFPRQEV----EAM---- 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGF 826
GY + F G + Y GVA+L K PV V GF
Sbjct: 51 -GYQVY-FHGQKAHY-GVAILCKQTPVEVIKGF 80
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 114 (45.2 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 37/131 (28%), Positives = 64/131 (48%)
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYFSNF 961
++LR H +S +E +V+ GD+N++ +D+ + N GK F +ER +
Sbjct: 135 TYLREH-RSNSE--RLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEEREWLQTL 191
Query: 962 LDLGFLDVHRHLYPN-HRIYTYWPYYDRPSK-MKGWRLDYFLISKQLKSHLS----DLEI 1015
LD G +D R L+P+ ++++ Y R + +G R+D L + L D E+
Sbjct: 192 LDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEAGIDYEL 251
Query: 1016 HGDVEGSDHAP 1026
+ SDHAP
Sbjct: 252 RAIDKPSDHAP 262
Score = 88 (36.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKD--GFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
K+ S+N+NG+RA ++++L I Q D G ++ HD F QE+ E +
Sbjct: 2 KVISFNINGLRA--RLHQLQALIDKHQPDVIGLQEIKVHD-EAFPRQEV----EAM---- 50
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGF 826
GY + F G + Y GVA+L K PV V GF
Sbjct: 51 -GYQVY-FHGQKAHY-GVAILCKQTPVEVIKGF 80
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 161 (61.7 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 86/317 (27%), Positives = 135/317 (42%)
Query: 736 KIGSWNVNGIRAWSQVNKLFT--SIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE-- 791
++ SWN+NGIR+ Q ++ S G + + D ++ C+QE + L +
Sbjct: 3 RVVSWNINGIRSPLQ-GMVYEEPSNCAAMAMG-RILDKLDADIVCLQETKVTTHVLCQXL 60
Query: 792 -CPEGYHAF-WFPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
EGY+++ +F R GY+GVA K P+ G S G++ TH + G +G
Sbjct: 61 AIIEGYNSYSFFSRNRSGYSGVATFCKDSATPMAAEEGLS----GLLATHNGDVGC--YG 114
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKL 904
+ E + EL + + + ++ T E +Q L+NVY P A L+ K+
Sbjct: 115 NMDEF--TQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLTFKM 172
Query: 905 LWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE-RNYFSNFL 962
+ L+ ++L V++ GDLN AH ID NL F R + L
Sbjct: 173 RFYRLLQIRAEALLAAGSHVIILGDLNTAHCPID-HWDAVNL--ECFEEDPGRKWMDGLL 229
Query: 963 -DLG---------FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLK-SH 1009
+LG F+D +R P +T W + G RLDY L + L
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVLGDRTLVIDT 289
Query: 1010 LSDLEIHGDVEGSDHAP 1026
D + +V GSDH P
Sbjct: 290 FQDSFLLPEVMGSDHCP 306
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 160 (61.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 80/313 (25%), Positives = 130/313 (41%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
++ SWN+NGIR+ Q + + + D ++ C+QE + + L E P
Sbjct: 3 RLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTE-PLA 61
Query: 794 --EGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F R GY+GVA K PV G S G++ T + G +
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLS----GLLSTQNGDVGCYGNMD 117
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKLL 905
D + EL + + + ++ T E ++ L+NVY P A L+ K+
Sbjct: 118 DF----TQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMR 173
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDV--ALPLTNLGKSGFTIQERNYFSNF- 961
+ L+ ++L V++ GDLN AH ID A+ + + SN
Sbjct: 174 FYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLG 233
Query: 962 LDLG-----FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLK-SHLSDL 1013
+ G F+D +R P + +T W + G RLDY L + L
Sbjct: 234 CESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTFQSS 293
Query: 1014 EIHGDVEGSDHAP 1026
+ +V GSDH P
Sbjct: 294 FLLPEVMGSDHCP 306
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 160 (61.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 80/313 (25%), Positives = 130/313 (41%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
++ SWN+NGIR+ Q + + + D ++ C+QE + + L E P
Sbjct: 3 RLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTE-PLA 61
Query: 794 --EGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F R GY+GVA K PV G S G++ T + G +
Sbjct: 62 IIEGYNSYFSFSRNRSGYSGVATFCKDSATPVAAEEGLS----GLLSTQNGDVGCYGNMD 117
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKLL 905
D + EL + + + ++ T E ++ L+NVY P A L+ K+
Sbjct: 118 DF----TQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLTFKMR 173
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDV--ALPLTNLGKSGFTIQERNYFSNF- 961
+ L+ ++L V++ GDLN AH ID A+ + + SN
Sbjct: 174 FYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLG 233
Query: 962 LDLG-----FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLK-SHLSDL 1013
+ G F+D +R P + +T W + G RLDY L + L
Sbjct: 234 CESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTFQSS 293
Query: 1014 EIHGDVEGSDHAP 1026
+ +V GSDH P
Sbjct: 294 FLLPEVMGSDHCP 306
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 75/285 (26%), Positives = 125/285 (43%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
KI ++NVNG+R +V++ F S+ L+ D F D ++ C QE + ++L
Sbjct: 2 KIVTYNVNGLR--QRVSQ-FDSL-LKLLDSF------DADIICFQETKLRRQELTADLAI 51
Query: 793 PEGYHAFWFPGTRQ------GYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+GY +F F TR GY+GVA + K + ++ V G SN
Sbjct: 52 ADGYESF-FSCTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVN-SNSR 109
Query: 847 GSDMESGPSHPELTTIQYADASGID-DGRVMTVEYEQFYLVNVYAP-AAKEDLSMLSVKL 904
G E+ L + + ID +GR + ++ F + NVY P A +D + K
Sbjct: 110 GGKSETSTVAEGLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKH 169
Query: 905 LWNSFLRGHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL- 962
+ L + L + + V + GDLN+A +D + K+ F R +F + L
Sbjct: 170 RFYGVLERRWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEF----RKWFRSLLV 225
Query: 963 DLG--FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLIS 1003
+ G F DV R +P + +T W + G R+D+ L++
Sbjct: 226 ERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVA 270
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 155 (59.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 85/315 (26%), Positives = 131/315 (41%)
Query: 736 KIGSWNVNGIRAWSQ-VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
++ SWN+NGIR Q V S G + + D ++ C+QE + + L E
Sbjct: 3 RVVSWNINGIRRPLQGVANQEPSNCAAVAVG-RILDELDADIVCLQETKVTRDALTEPLA 61
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
EGY++++ F R GY+GVA K PV G S G+ T + G +G+
Sbjct: 62 IVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLS----GLFATQNGDVGC--YGN 115
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-SMLSVKLL 905
E + EL + + + ++ T E ++ L+NVY P A L K+
Sbjct: 116 MDEF--TQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMR 173
Query: 906 WNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL-D 963
+ L+ ++L V++ GDLN AH ID NL + R + + L +
Sbjct: 174 FYRLLQIRAEALLAAGSHVIILGDLNTAHRPID-HWDAVNL-ECFEEDPGRKWMDSLLSN 231
Query: 964 LG---------FLDVHRHLYPNHR-IYTYWPYYDRPSKMK-GWRLDYFLISKQLKSHLSD 1012
LG F+D +R P +T W + G RLDY L + L
Sbjct: 232 LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQ 291
Query: 1013 LE-IHGDVEGSDHAP 1026
+ +V GSDH P
Sbjct: 292 ASFLLPEVMGSDHCP 306
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 153 (58.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 82/327 (25%), Positives = 135/327 (41%)
Query: 736 KIGSWNVNGIRAWSQ-VNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
KI +WN+NGIR + + K+ D F D ++ C+QE + + L E
Sbjct: 2 KIVTWNINGIRTFKNGIKKIL--------DSF------DADIICVQETKVTRDLLDEKTA 47
Query: 792 CPEGYHAFW-FPGTRQGYAGVAVLSK--TKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
+GY++++ F R GY+GVA K P G + G++ G G +G
Sbjct: 48 IVDGYNSYFSFSRGRSGYSGVATYCKDAATPFLAEEGLT----GLLSNQGAVIGC--YGD 101
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVE-YEQFYLVNVYAPAAKEDL-SMLSVKLLW 906
+E + EL + + I + + ++ ++NVY P A D KL +
Sbjct: 102 QVEL--TSEELLALDNEGRAVITQHHFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQF 159
Query: 907 NSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALP--LTNL----GKSG-----FTIQE 954
L+ ++ L+ V++ GD+N +H ID P + N G+ F E
Sbjct: 160 YRLLQCRAEAILSSGSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFETAE 219
Query: 955 RNYFSNFLD----------LG--FLDVHRHLYPNH-RIYTYWPYYDRPSKMK-GWRLDYF 1000
+ N D G F+D R+ +P +T W + G R+DY
Sbjct: 220 NSENGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI 279
Query: 1001 LISKQL-KSHLSDLEIHGDVEGSDHAP 1026
+ L K+ ++I +VEGSDH P
Sbjct: 280 FSNHSLVKTFFIGVDIMPEVEGSDHCP 306
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 117 (46.2 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 63/250 (25%), Positives = 115/250 (46%)
Query: 739 SWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP--EGY 796
++NVNGIR + F+ + + F F R D+ F QE++ + + +G+
Sbjct: 21 TFNVNGIRTFFHYQP-FSQMNQSLRSVFDFFRA-DIITF--QELKTEKLSISKWGRVDGF 76
Query: 797 HAFW-FPGTRQGYAGVA----VLSKTKPV-RVTHGFSMKVG--GVVHTHGFNRGSNEHGS 848
++F P TR+GY+GV + K P+ + G G + + + +
Sbjct: 77 YSFISIPQTRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSAISYRN 136
Query: 849 DMESG-PSHPELTT-IQYADASGID-DGRVMTVEYE-QFYLVNVYAPA---AKEDLSMLS 901
D+ G + L + A +D +GR + VE +++VY PA + E+ M
Sbjct: 137 DVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFR 196
Query: 902 VKLLWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDVA-------LPLTN-LGKSGFTI 952
++ L LR +++L++I K +VL GD+NV + ID A +P+T+ +G +
Sbjct: 197 LRFL-KVLLR-RVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEA 254
Query: 953 QERNYFSNFL 962
Q R+ F+
Sbjct: 255 QYRDKAIQFI 264
Score = 84 (34.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 967 LDVHRHLYPNHRI--YTYWPYYD--RPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGS 1022
+D R + +R+ YT W RPS G R+D+ L+S +L+ + +I D+ GS
Sbjct: 294 IDTTRLIQTRNRLKMYTVWNMLKNLRPSNY-GSRIDFILVSLKLERCIKAADILPDILGS 352
Query: 1023 DHAP 1026
DH P
Sbjct: 353 DHCP 356
>TIGR_CMR|SPO_3425 [details] [associations]
symbol:SPO_3425 "exodeoxyribonuclease III, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587
RefSeq:YP_168621.1 ProteinModelPortal:Q5LMY7 GeneID:3195340
KEGG:sil:SPO3425 PATRIC:23380309 OMA:KWVDITR ProtClustDB:CLSK863995
Uniprot:Q5LMY7
Length = 262
Score = 99 (39.9 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 42/152 (27%), Positives = 67/152 (44%)
Query: 887 NVYAPAA-----KEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALP 941
N Y PA +E KL + + +R + N + +L GDLN+A DV
Sbjct: 105 NFYVPAGGDVPDREVNEKFGQKLDYLTEMRDWFHA-NAPEKSILVGDLNIAPREDDVWNH 163
Query: 942 LTNLGKSGFTIQERNYFSNFLDLG-FLDVHRHLYPNHRIYTYWPYY--DRPSKMKGWRLD 998
L T E ++ +D G ++D+ R P +Y++W Y D + KG RLD
Sbjct: 164 KQLLKIVSHTPIEVDHLGQVMDSGKWVDITRQDIPQGLLYSWWSYRAKDWSAADKGRRLD 223
Query: 999 YFLISKQLKS--HLSDL--EIHGDVEGSDHAP 1026
+ + + + H S + + G + SDHAP
Sbjct: 224 HVWATPDISNAGHSSRILRDARGWEQPSDHAP 255
Score = 81 (33.6 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
F + +WN+N +R L++ + + ++ C+QEI+ P++K+P
Sbjct: 3 FTLATWNINSVR-------------LREPIVCKLLAEEGPDILCLQEIKSPVDKMPVEGF 49
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSK 816
GY G ++GY GVA+LS+
Sbjct: 50 ADLGYRHVVAHG-QKGYNGVAILSR 73
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 124 (48.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 40/139 (28%), Positives = 62/139 (44%)
Query: 903 KLLWNSFLRGHLKSLNEIK-PVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNF 961
KL W L+ L + P ++AGD N+ D P + F + R F
Sbjct: 132 KLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALFRPESRAAFRRI 191
Query: 962 LDLGFLDVHRHLY--PNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGD 1018
L+LGF + R P H Y++W Y ++ G R+D+FL++ Q + D I +
Sbjct: 192 LNLGFTEAFRARVQGPGH--YSFWDYQAGAWNRNDGIRIDHFLLTPQAADLMRDCGIDKE 249
Query: 1019 VEG----SDHAPQILYLNL 1033
V G SDH P + L++
Sbjct: 250 VRGRDKPSDHVPVWVELDI 268
Score = 51 (23.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-ECPE 794
KI ++N+NGI+A ++ L + Q D V +QEI+ E P E E
Sbjct: 2 KIATFNINGIKARAEA--LPAWLDSAQPD-----------VALLQEIKSVDESFPREMFE 48
Query: 795 --GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHG 825
GY+ G ++G+ GVA+LSK V+ G
Sbjct: 49 ERGYNVETH-G-QKGFNGVAILSKLPLEDVSRG 79
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 129 (50.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 40/136 (29%), Positives = 66/136 (48%)
Query: 872 DGRVMTVEYEQFYLVNVYAP--AAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDL 929
DGRV+ E+E F L+N Y+P K++ + + W+ + L ++ KP++ GDL
Sbjct: 165 DGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSD-KPLIWCGDL 223
Query: 930 NVAHNHIDVALP---LT------------NLGKSGFTIQERNYFSNFLDLGFL-DVHRHL 973
NV+H IDV+ P T + G+ GFT ER F + G L D +R+L
Sbjct: 224 NVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVDAYRYL 283
Query: 974 YPNHRIYTYWPYYDRP 989
+ + + + + P
Sbjct: 284 HKEQEMESGFSWSGNP 299
Score = 124 (48.7 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 946 GKSGFTIQERNYFSNFLDLGFL-DVHRHLYPNHRIYTYWPYYDRP-SKMKG--WRLDYFL 1001
G+ GFT ER F + G L D +R+L+ + + + + P K +G R+DYFL
Sbjct: 255 GQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFL 314
Query: 1002 ISKQLKSHLSDLEIHG---DVEG---SDHAPQILYLN 1032
+S+QLK + ++HG ++EG SDH P L L+
Sbjct: 315 VSEQLKDRIVSCKMHGRGIELEGFHGSDHCPVTLELS 351
Score = 45 (20.9 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 722 LEHKRRQDQYPWNFKIGSWNVNG--IRA---WSQVNKLFTSIFLQQKDGFSFMRQHDLNV 776
+E ++ Q++ P F +WN N +R WSQ +K F S F D +V
Sbjct: 33 VEEEKNQNE-PSKFM--TWNANSFLLRVKNDWSQFSK-FVSDF-------------DPDV 75
Query: 777 FCIQEIRCP 785
IQE+R P
Sbjct: 76 IAIQEVRMP 84
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKT--KPVRV 822
P G + W+ YAG A+L K KP +V
Sbjct: 120 PFGNYGVWWSLADSKYAGTALLVKKCFKPRKV 151
>UNIPROTKB|G3V574 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020848 PROSITE:PS00728 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006281 GO:GO:0090305 GO:GO:0045454
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V574
SMR:G3V574 Ensembl:ENST00000557054 ArrayExpress:G3V574 Bgee:G3V574
Uniprot:G3V574
Length = 49
Score = 110 (43.8 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/44 (54%), Positives = 26/44 (59%)
Query: 990 SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
SK GWRLDYFL+S L L D +I GSDH P LYL L
Sbjct: 6 SKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 49
>UNIPROTKB|E1BQV7 [details] [associations]
symbol:E1BQV7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004674
"protein serine/threonine kinase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IEA] InterPro:IPR000719 InterPro:IPR001943
InterPro:IPR002290 InterPro:IPR008271 InterPro:IPR011009
InterPro:IPR017441 InterPro:IPR022165 Pfam:PF00069 Pfam:PF12474
PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011 PROSITE:PS50151
SMART:SM00220 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF56112 GO:GO:0004674 GO:GO:0046777 OMA:DARWTTS
GeneTree:ENSGT00690000101752 EMBL:AADN02030845 EMBL:AADN02030846
IPI:IPI00588830 ProteinModelPortal:E1BQV7
Ensembl:ENSGALT00000013539 Uniprot:E1BQV7
Length = 1213
Score = 112 (44.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 57/239 (23%), Positives = 106/239 (44%)
Query: 88 QVVRKKRVSPSREMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDDLECESL 147
Q+++ V+ + +++++A +E V D D +E + +L L D S
Sbjct: 285 QLLQHPFVTVTSNKPIRELIAEAKAEVTEEVEDGKDEDEEEETDSSL--QLPADKRASS- 341
Query: 148 HVSELKDENDENIGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFNVKPIR 207
+S E D+ +Q+ + +SL + +TES+ E T +D + R
Sbjct: 342 DLSIASSEEDKL--SQNASVLESLSE---KTESNVTEEKSNTMFPDDKTIEDESQDIKSR 396
Query: 208 KTSAN--KSVKAD-DLKN-VLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELH 263
KT+ + V D ++N + E G +P+ K + + + E T P G EL+
Sbjct: 397 KTAESIPDGVGGDIKVQNGSVPTGEVEQGKILPIEKNTESLEETAEDTEPQ--KGRKELN 454
Query: 264 VSEMEENNDDSNIKLHREVKSDV-NEDQESN-IKIVRDLDSEVINSEQTVDRTESSEDK 320
+ E D+ N+K +E +D+ NE +E N +K+V +D V E + T E++
Sbjct: 455 AVTISEIKDEHNLKTEKE--NDIGNEQREENELKVVPGIDDSVETGEAVSEETGEKEEE 511
Score = 76 (31.8 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 30/140 (21%), Positives = 59/140 (42%)
Query: 468 KNTRKHDKKYTTNSESIQTSVSNI---RDSTSRNLK------TKSVNIEDKSESASTATL 518
K T K +K+ + + + S I DS S ++ + + + K E + L
Sbjct: 796 KKTLKKTRKFVVDGVEVSVTTSKIVTENDSKSEEMRFLRRQELRELRLLQKEEQRAQQQL 855
Query: 519 KTIGKEDKDFISRPVKSSRVSTKIQLDHSVK---KSQKQGLTKYESQPSSTSTSTDVLPA 575
+ ++ + R + S K Q D ++ K QKQ + + E + T+ D A
Sbjct: 856 SNKLLQQREQMYRRFEQEMTSKKRQYDQEIENLEKQQKQTIERLEQE--HTNRLRD--EA 911
Query: 576 HKMSLAPERKIAQFNNRNKL 595
++ E+++++F N N L
Sbjct: 912 KRIKAEQEKELSKFQNMNPL 931
>FB|FBgn0260965 [details] [associations]
symbol:CG42588 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 SMART:SM00320 EMBL:AE014296 GO:GO:0022008
Gene3D:2.130.10.10 SUPFAM:SSF50978 GeneTree:ENSGT00550000074593
KO:K15200 FlyBase:FBgn0260965 RefSeq:NP_648604.2 IntAct:Q9VU16
MINT:MINT-283631 EnsemblMetazoa:FBtr0301717 GeneID:39457
KEGG:dme:Dmel_CG42588 UCSC:CG11008-RA InParanoid:Q9VU16 OMA:LYHPPKM
PhylomeDB:Q9VU16 GenomeRNAi:39457 NextBio:813742
ArrayExpress:Q9VU16 Bgee:Q9VU16 Uniprot:Q9VU16
Length = 2730
Score = 99 (39.9 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 60/234 (25%), Positives = 99/234 (42%)
Query: 177 RTESHSPEPLKMTNP--REDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGY 234
+T S PEPLK NP + + +++T K ++K F ED
Sbjct: 816 KTAS-DPEPLKEVNPPVKRAPIRSKKAKINLVQRTKRPSIQKPIEVKKAKLDFEEEDEQA 874
Query: 235 VPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREVKSDVNEDQESNI 294
+ + S+ E +P I + ++ S + N++ S++K + +V +D + +E I
Sbjct: 875 MAI-DHSL---MEDRYGVPGIEVNDNSASTSSDQINHNLSSVKNNPKVPADEKQCEEE-I 929
Query: 295 KIVRDLDSEVINS-EQTVDRTESS---EDKY-SKSQ-HGDLNDIYFPSNL-YHKKTFKTT 347
V+D DS + E D +E S EDK SKS DL +Y P + +K T KT+
Sbjct: 930 SPVQDEDSAKSQAHEDKDDESEISYQKEDKIQSKSSSERDLTQLYHPPKMPKNKSTHKTS 989
Query: 348 ----------AGSSENI-LLKGLLMNRKSTQPRHSISTSKNRSPTQNEIDMIVE 390
A SS N+ L+ L N + Q + K+ +D V+
Sbjct: 990 SQEDFEVPQPASSSSNVSLIDVLSQNPPAPQGEPQLPFRKDSQELNTSVDSSVD 1043
Score = 96 (38.9 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 61/254 (24%), Positives = 102/254 (40%)
Query: 464 SSPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTKSVNIEDKSESASTATLKTIGK 523
SS SK D+K E ++ + SR + TKS+ + ++T I
Sbjct: 1303 SSESKCVT--DEKQPVIKEKDSITLDR-KSEKSRRMSTKSILMTTDEHVKDSSTTSKIN- 1358
Query: 524 EDKDFISRPVKS--SRVSTKIQLDHSVKKSQKQGLTKYESQPSSTSTSTDVLPAHKMSLA 581
+K S P+K+ S +T+++L S KQ S + T+ L + ++
Sbjct: 1359 -EKRLTSSPLKTPGSSENTELRLLEEGNASDKQN-EHLISPEALTNQKNAKLKKNLEEVS 1416
Query: 582 PERKIAQFNNRNKLVL-LHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDV 640
PE+ ++ +R K H K SEN+ K K E E E G + T+ D
Sbjct: 1417 PEKPVSSLRSRGKRKSGSHNKKLDESEKHSENISCAK-KEEKATERDLE-DGEQLTTVDS 1474
Query: 641 EESGFFTVEPIPDSNLYNEWEYRPPKRKKA--SRKNVFSFK-LNEIHVGTGKIENRLGCD 697
E T PI + N R ++ + S+ + K L E V + K + D
Sbjct: 1475 TEDTDSTRNPIDNITAENT-AIRAKRKTRCIVSKDSKKEMKDLKEDGVKSSKDDLPPTMD 1533
Query: 698 SSNETSYAEVEEVP 711
SS + ++++VP
Sbjct: 1534 SSEKPEDQKLDDVP 1547
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 115 (45.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 38/129 (29%), Positives = 64/129 (49%)
Query: 913 HLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTNL------GKSGFTIQERNYFSNFLDLG 965
+LKS + P+ + GD N+A D+ + N GK+ F +ER +F+ D G
Sbjct: 136 YLKSSCDPDAPLAVMGDFNIAPVDPDIGIGADNAKRWLRTGKTSFLPEERAWFAALRDWG 195
Query: 966 FLDVHRHLYPN-HRIYTYWPYYDR--PSKMK-GWRLDYFLISKQLKSHLS----DLEIHG 1017
D +R LYP+ ++++ Y R S+ K G R+D+ L+++ L+ D +I
Sbjct: 196 LHDSYRELYPDIDDRFSWFDYRSRGFESEPKRGLRIDHILLTRPLQQACRAAGIDYDIRA 255
Query: 1018 DVEGSDHAP 1026
+ SDH P
Sbjct: 256 MEKPSDHCP 264
Score = 51 (23.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
K+ S+NVNG+R S++++L + + D +Q+ PL + G
Sbjct: 2 KLVSFNVNGLR--SRLHQLEELVRTHRPDIIGLQETK------VQDADFPLAAVQAL--G 51
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHG 825
YH + G + + GVA+LS P V G
Sbjct: 52 YHVIYH-GQKTHH-GVALLSLQPPRDVRLG 79
>FB|FBgn0037836 [details] [associations]
symbol:CG14692 species:7227 "Drosophila melanogaster"
[GO:0008603 "cAMP-dependent protein kinase regulator activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0032027 "myosin light chain binding" evidence=RCA]
InterPro:IPR000048 InterPro:IPR003117 Pfam:PF00612 Pfam:PF02197
PROSITE:PS50096 SMART:SM00015 SMART:SM00394 EMBL:AE014297
GO:GO:0007165 GO:GO:0008603 eggNOG:NOG12793 SUPFAM:SSF47391
RefSeq:NP_650019.4 ProteinModelPortal:Q9VGW4 SMR:Q9VGW4
IntAct:Q9VGW4 MINT:MINT-328162 GeneID:41298 KEGG:dme:Dmel_CG14692
UCSC:CG14692-RB FlyBase:FBgn0037836 InParanoid:Q9VGW4
OrthoDB:EOG4B8GTZ GenomeRNAi:41298 NextBio:823185 Bgee:Q9VGW4
Uniprot:Q9VGW4
Length = 2743
Score = 135 (52.6 bits), Expect = 0.00023, P = 0.00023
Identities = 125/655 (19%), Positives = 250/655 (38%)
Query: 98 SREMHLKDILATFDSEDGAIVVDASRRDRKELKEPT--LPEDL-FDDLECESLHVSEL-- 152
+ E+ L +L T + D D K +K+ T L ED + + ES + EL
Sbjct: 797 NHEITLSKVLKTVSENKQERMEDLPSED-KIVKDSTSSLAEDSKMPEAKKESKSIDELET 855
Query: 153 -KDENDENIGAQSQVIHDSLFKHRNRTESHSPE--PLKMTNPREDYDFFSDFNVKPIRKT 209
K+ ++ I +++ + ++ ++ T+ + P ++ N ++ + V PI
Sbjct: 856 TKEVLEDIIHSETDLSKQNIKENVEETDKPQSDDSPKELENLKDKIKMLTQEEVTPIEPE 915
Query: 210 SAN-KSVKADDLKNVLNLFA---SEDGGY----VPVLKKSVEISQEKEPTLPAILMGNSE 261
S K + + D + +LF+ SE+ V + + ++ EK L + + S
Sbjct: 916 SLETKGLLSTDKNDKNSLFSKTNSEENNNESQNVDDITEKTDLKNEKH-LLASHISVTSS 974
Query: 262 LHVSEMEENNDDSNIKLHREVKS-DVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDK 320
+S E ++ +++ E+ S +++ DQ N+K+ ++ EQ+ ++T ++
Sbjct: 975 GDISIRE--SETKHVENREEMASTNLDSDQVENMKLEGEIGQLKTVFEQSEEKTSPTK-- 1030
Query: 321 YSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLLMNRKSTQPRHSISTSKNRSP 380
S+S H + I S K++ + AG ++ LL N S++ +S S +N P
Sbjct: 1031 -SESLHAEDRKISGKS----KESLED-AGENDR---STLLENLPSSEKENSTSLDENPLP 1081
Query: 381 TQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEE--SYEXXXXXXXXXXXXXXXXXX 438
+ + + ++ SL+ + S +E S E
Sbjct: 1082 EKESTSLDEKPSSGTEKSTSLDEKSSSEKEKSTSLDEKPSSEKEKSTSLDETPSSEKENS 1141
Query: 439 XXYSDXXXXXXXXXXXXXXXXGGIISSPSKNTRKHDKKYTTNSESIQTSVSNIRDSTSRN 498
+ G S S + + +K + S + S S STS N
Sbjct: 1142 TSLDEKPSPEKESTSLDEKPSSGTEKSTSLDEKSSSEKEKSTSLDEKPS-SEKEKSTSLN 1200
Query: 499 LKTKSVNIEDKSESASTATLKTIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTK 558
+ S +K S S + KE +P + ST + + S +K + L +
Sbjct: 1201 ERPSS----EKENSTSLVENPSPEKESTSLDEKPSSGTEKSTSLDENPSSEKEKSTSLNE 1256
Query: 559 YESQPSSTSTSTDVLPAHKMSLAPERKIAQFNNRNKLVLLHTKTTHVKTVPSENVQNTKG 618
S STS D P+ + + + + K L K + K + +N
Sbjct: 1257 RPSSEKENSTSQDEKPSSETEKSTSLDEKPSSEKEKSTSLDGKPSSEKEKSTSLDENPSS 1316
Query: 619 KFELLKEIKFERTGSE-DTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKKASRKNVFS 677
+ E + ER SE + S + E+ P +S +E ++ + +N S
Sbjct: 1317 EKEKSTSLN-ERPSSEKENSTSLVENP----SPEKESTSLDEKPSSGTEKSTSLDENPSS 1371
Query: 678 FKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFN-DPFR-ILEHKRRQDQ 730
K + + S +E +E E+ ++D N D R +++ ++ D+
Sbjct: 1372 EKEKSTSLNERPSSEKENSTSQDEKPSSEKEKSTLLDKNTDLMRDLIQVSQKVDE 1426
>DICTYBASE|DDB_G0293562 [details] [associations]
symbol:DDB_G0293562 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0293562 EMBL:AAFI02000218 eggNOG:NOG253936
InterPro:IPR014898 Pfam:PF08790 RefSeq:XP_629009.1
ProteinModelPortal:Q54BM0 EnsemblProtists:DDB0192009 GeneID:8629293
KEGG:ddi:DDB_G0293562 InParanoid:Q54BM0 OMA:ECASTVI
ProtClustDB:CLSZ2846558 Uniprot:Q54BM0
Length = 527
Score = 100 (40.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 63/276 (22%), Positives = 118/276 (42%)
Query: 86 ECQVVRKKRVSPSREMHLKDILATFDSEDG-AIVVDASRRDRKELKEPTLPEDLFDDLEC 144
E + V K+V + K+ + DS D + ++ D K+ K+ E ++ E
Sbjct: 178 ETKKVETKKVETKKVETKKEESSDSDSSDSDSSSSESESEDEKKKKDTKKVEIKKEESES 237
Query: 145 ESLHVSELKDENDEN--IGAQSQVIHDSLFKHRNRTESHSPEPLKMTNPREDYDFFSDFN 202
ES SE +DEN +N +G + + DS + +ES S + K N ++
Sbjct: 238 ESSE-SESEDENKDNKKVGTKKEESSDS---DSSSSESESEDEKKKKNNKK-------VE 286
Query: 203 VKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKK-SVEISQEKEPTLPAILMGNSE 261
K ++S ++S + + + +SE KK S ++ +KE + + +SE
Sbjct: 287 AKK-EESSDSESESESESSSSSSSSSSESESEDEKKKKDSKKVETKKEGSSDS--ESSSE 343
Query: 262 LHVSEMEENNDDSNIKLHREVKSDVNEDQ----ESNIKIVRDLDSEVINSEQTVDRTESS 317
S +E D +++ +E SD ES + D++ E E++ + S
Sbjct: 344 ---SVEDEKMDIEKVEIKKEESSDSESSSPASSESKEEEKMDIEKEETKKEESSSSSSES 400
Query: 318 EDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSEN 353
E++ KS+ D +D S KK +++ SE+
Sbjct: 401 EEEQKKSKKED-SDSDESSEDEKKKEESSSSSESED 435
Score = 74 (31.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/107 (23%), Positives = 48/107 (44%)
Query: 468 KNTRKHDKKYTTNSESIQTSVSNIRDSTSRNLKTK----SVNIEDKSESASTATLKTIGK 523
K ++K D +SE + + S S + K K S + ED+ + + + +
Sbjct: 405 KKSKKEDSDSDESSEDEKKKEESSSSSESEDEKKKEDSDSESSEDEKKKEDSDSSSSSES 464
Query: 524 EDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPSSTSTST 570
ED+D + SS ++ + D S S+ + +S SS+S+S+
Sbjct: 465 EDEDKKKKDSSSSESESEKESDSSSSSSESDSSSSSDSDSSSSSSSS 511
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 125 (49.1 bits), Expect = 0.00036, P = 0.00036
Identities = 79/319 (24%), Positives = 131/319 (41%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFS-FMRQHDLNVFCIQEIRCPLEKLPE--- 791
++ SWN+NGIR S + L + + D ++ C+QE + + L E
Sbjct: 3 RVVSWNINGIR--SPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLA 60
Query: 792 CPEGYHAFW-FPGTRQGYA-------GVAVLSKTK--PVRVTHGFSMKVGGVVHTHGFNR 841
EGY++++ F +R GY+ GVA K PV G S GV T +
Sbjct: 61 IVEGYNSYFSFSRSRSGYSECPCLSPGVATFCKDSATPVAAEEGLS----GVFATLNGDI 116
Query: 842 GSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDL-S 898
G +G+ E + EL + + + ++ T+E ++ L+NVY P A
Sbjct: 117 GC--YGNTDEF--TQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPGKPE 172
Query: 899 MLSVKLLWNSFLRGHLKSLNEI-KPVVLAGDLNVAHNHIDV--ALPL----TNLGKSGFT 951
L+ K+ + L+ ++L V++ GDLN AH ID A L +N +
Sbjct: 173 RLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFQSNPLREWLD 232
Query: 952 IQERNYFSNFLDLGFLDVHR-HLYPNHR-IYTYW-PYYDRPSKMKGWRLDYFLISKQLKS 1008
N + V+ +L+P+ + ++ W P +DY L+ L
Sbjct: 233 YSRMNPGGEQAPVSLFCVYYIYLHPHQQWVWEEWTPLSSSYHVCYIVSIDYVLLDFHLVI 292
Query: 1009 H-LSDLEIHGDVEGSDHAP 1026
H SD G + S+H P
Sbjct: 293 HSFSDSFHRGPILSSNHLP 311
>UNIPROTKB|E2RCQ3 [details] [associations]
symbol:IWS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR017923 Pfam:PF08711
PROSITE:PS51319 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
Gene3D:1.20.930.10 GeneTree:ENSGT00700000104555 EMBL:AAEX03011838
Ensembl:ENSCAFT00000007213 NextBio:20851826 Uniprot:E2RCQ3
Length = 822
Score = 116 (45.9 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 84/341 (24%), Positives = 150/341 (43%)
Query: 83 SDRECQVVRKKRVSPSR-EMHLKDILATFDSEDGAIVVDASRRDRKELKEPTLPEDLFDD 141
SD E + + K S S E LK ++ +SE+ AS + +EL +P + + ++
Sbjct: 157 SDSEVEELPKSPASDSETEDALKPQISDSESEEPQ-QHQASDSENEELPKPRISDSESEE 215
Query: 142 LECESLHVSELKDENDENIGAQSQVIHDSLFKHR-NRTESHSPEPLKMTNPREDYDF--- 197
L VS+ + E + A S ++ L K R + +ES P P + E+ +
Sbjct: 216 LP--KPRVSDSESEEPQRTQA-SDSENEELPKPRISDSESEDPPPRHQASDSENEELPKP 272
Query: 198 -FSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVLKKSVE-ISQEKE-PTLPA 254
SD + + K A+ S + K ++ SE+ P E S+ K+ P
Sbjct: 273 QASDSENEELPKNQASDSENEELPKPRVSDSESEEPQKGPASDSETEDASRHKQKPESDD 332
Query: 255 ILMGNSELHVSEMEENN--DDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVD 312
G ++ +EM+ ++ DS+I R SD E++ KI D D E + E+ V
Sbjct: 333 DSDGENKGEDTEMQNDSFHSDSHIDRKRIQSSDSEEEEPKRPKIESDEDEEKVGEEEKVA 392
Query: 313 RTESS-------EDKYS--KSQ---HGDLNDIYFPSNLYHKKTFKTTAGSSENILLKGLL 360
+ +++ E+K S KS+ D +D S+ K+ KT A SE + K L
Sbjct: 393 KRKAAVLSDSEDEEKASAKKSRVVSDADDSDSDVISDKSGKRE-KTLASDSEEEVGKEEL 451
Query: 361 MNRKSTQPRHSISTSKNRSPTQNEI-DMIVENFISVQRKFS 400
++K+ + S S++ + +N I D+ E+ + +F+
Sbjct: 452 SDKKNEEKDLFGSDSESGNEEENLIADIFGESGDEEEEEFT 492
Score = 58 (25.5 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 33/128 (25%), Positives = 47/128 (36%)
Query: 505 NIEDKSESASTATLKTIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQPS 564
N ED E S +K D D + K + ++ KKS + +
Sbjct: 495 NQEDLEEEKSETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMSGKRRRNRDGGT 554
Query: 565 STSTSTDVLPAH--KMSLAPERKIAQFNNRNK-----LVLLHTKTTHVKTVPSENVQNTK 617
S + DV+ A KM+ A E Q NN+ K L LL T H+K +
Sbjct: 555 FISDADDVVSAMIVKMNEAAEED-RQLNNQKKPALKKLTLLPTVVMHLKKQDLKETFIDS 613
Query: 618 GKFELLKE 625
G +KE
Sbjct: 614 GVMSAIKE 621
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1033 997 0.0010 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 63
No. of states in DFA: 625 (66 KB)
Total size of DFA: 475 KB (2222 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 114.19u 0.12s 114.31t Elapsed: 00:01:04
Total cpu time: 114.21u 0.12s 114.33t Elapsed: 00:01:04
Start: Thu Aug 15 13:50:53 2013 End: Thu Aug 15 13:51:57 2013