RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12564
(1033 letters)
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5'
exonuclease, AP endonuclease; HET: PG4; 1.23A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A*
3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Length = 265
Score = 285 bits (732), Expect = 4e-89
Identities = 89/304 (29%), Positives = 131/304 (43%), Gaps = 55/304 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
KI SWNVNG+RA +K + + ++ C+QEI+ E+LP
Sbjct: 4 LKIISWNVNGLRAV------------HRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLR 51
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
EGY +F+ P R+GY+GVA+ +K P + GF G D E
Sbjct: 52 HVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGF---------------GVERF--DTE 94
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GR+ +++ F L N+Y P L KL +
Sbjct: 95 ---------------------GRIQIADFDDFLLYNIYFPNGAMSEERLKYKLEFYDAFL 133
Query: 912 GHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVH 970
+ + + V++ GD N AH ID+A P N SGF ER + F++ G++D
Sbjct: 134 EDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTF 193
Query: 971 RHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQIL 1029
R + YT+W Y R + GWRLDYF ++++ K + I DV GSDH P L
Sbjct: 194 RMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGL 253
Query: 1030 YLNL 1033
+ L
Sbjct: 254 EIEL 257
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: BCN DIO GOL;
1.50A {Neisseria meningitidis}
Length = 259
Score = 277 bits (711), Expect = 3e-86
Identities = 80/305 (26%), Positives = 133/305 (43%), Gaps = 56/305 (18%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE--- 791
KI S NVNGIR+ +K + ++ ++ C+QE++ L
Sbjct: 2 LKIISANVNGIRSA------------YKKGFYEYIAASGADIVCVQELKAQEADLSADMK 49
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
P G H W ++GY+GVAV SK KP V G G E D E
Sbjct: 50 NPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGM---------------GIEEF--DRE 92
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLR 911
GR + ++ + ++++Y P+ VK +
Sbjct: 93 ---------------------GRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFY 131
Query: 912 GHLKSL-NEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLD-LGFLDV 969
L+++ NE + +V+ GD N+AH +ID+ N SGF +ER + + LG+ D+
Sbjct: 132 PMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDM 191
Query: 970 HRHLYPNHRIYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQI 1028
R LYP+ YT+W + +K GWR+DY +++ +L + ++ D + SDHAP +
Sbjct: 192 WRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLV 251
Query: 1029 LYLNL 1033
+ +
Sbjct: 252 VEYDY 256
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A
{Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Length = 285
Score = 269 bits (691), Expect = 4e-83
Identities = 116/333 (34%), Positives = 153/333 (45%), Gaps = 62/333 (18%)
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSF 768
E P + + P + + P KI SWNV+G+RAW +K G +
Sbjct: 7 EGPALYEDPPDQKTSPSGK----PATLKIASWNVDGLRAW------------IKKKGLDW 50
Query: 769 MRQHDLNVFCIQEIRCPLEKLPE---CPEGY-HAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
+++ ++ C+QE +C KLP G H +W P ++GY+GV +LS+ P++V+
Sbjct: 51 VKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVS 110
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQF 883
+G G EH D E GRV+ E++ F
Sbjct: 111 YGI---------------GDEEH--DQE---------------------GRVIVAEFDSF 132
Query: 884 YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLT 943
LV Y P A L L + W+ R LK L KP+VL GDLNVAH ID+ P
Sbjct: 133 VLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKG 192
Query: 944 NLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYF 1000
N +GFT QER F L + D RHLYPN YT+W Y SK GWRLDYF
Sbjct: 193 NKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYF 252
Query: 1001 LISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L+S L L D +I GSDH P LYL L
Sbjct: 253 LLSHSLLPALCDSKIRSKALGSDHCPITLYLAL 285
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease,
APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1
PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 269 bits (689), Expect = 3e-82
Identities = 122/378 (32%), Positives = 163/378 (43%), Gaps = 69/378 (18%)
Query: 664 PPKRKKASRKNVFSFKLNEIHVGTGKIENRLGCDSSNETSYAEVEEVPIIDFNDPFRILE 723
P + KK + E K + + E P + + P +
Sbjct: 2 PKRGKKGAVAEDGDELRTEPEAKKSKTAAK-------KNDKEAAGEGPALYEDPPDQKTS 54
Query: 724 HKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIR 783
+ P KI SWNV+G+RAW +K G ++++ ++ C+QE +
Sbjct: 55 PSGK----PATLKICSWNVDGLRAW------------IKKKGLDWVKEEAPDILCLQETK 98
Query: 784 CPLEKLP----ECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHG 838
C KLP E P H +W P ++GY+GV +LS+ P++V++G
Sbjct: 99 CSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGI------------ 146
Query: 839 FNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLS 898
G EH D E GRV+ E++ F LV Y P A L
Sbjct: 147 ---GDEEH--DQE---------------------GRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 899 MLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYF 958
L + W+ R LK L KP+VL GDLNVAH ID+ P N +GFT QER F
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 959 SNFLD-LGFLDVHRHLYPNHR-IYTYWPYYDRP-SKMKGWRLDYFLISKQLKSHLSDLEI 1015
L + D RHLYPN YT+W Y SK GWRLDYFL+S L L D +I
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 1016 HGDVEGSDHAPQILYLNL 1033
GSDH P LYL L
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 224 bits (572), Expect = 2e-64
Identities = 75/344 (21%), Positives = 122/344 (35%), Gaps = 68/344 (19%)
Query: 733 WNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRC-----PLE 787
+K +WNV G+R + K +++ +FM +V C+QE +
Sbjct: 148 RMYKFITWNVAGLRGL--LKKNASALR-------AFMEAEKPDVLCLQETKLNVDEADAN 198
Query: 788 KLPECPEGYHAFWFPGT-RQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEH 846
+GY P ++GY+G K G
Sbjct: 199 ATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRG--------------- 243
Query: 847 GSDMESGPSHPELTTIQYADASGIDD-GRVMTV----------EYEQFYLVNVYAPAAKE 895
+ S P + D+ GRV+T + LVN Y +
Sbjct: 244 -FALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGM 302
Query: 896 DLSMLSVKL-LWNSFLRGHLKSL-------------------NEIKPVVLAGDLNVAHNH 935
L+ L ++ ++ +R +L L + + AGDLNVA
Sbjct: 303 GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERD 362
Query: 936 IDVALPL---TNLGKSGFTIQERNYFSNFLD-LGFLDVHRHLYPNHR-IYTYWPYYDRP- 989
D + SGF +ER F + +D+ R LYP +Y++W
Sbjct: 363 YDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGR 422
Query: 990 SKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ GWRLDYF++S +L S++ D V GSDH P +++
Sbjct: 423 PRNLGWRLDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1
type, retrotransposition, retrotransposon, transferase;
1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Length = 238
Score = 204 bits (522), Expect = 3e-60
Identities = 53/307 (17%), Positives = 95/307 (30%), Gaps = 81/307 (26%)
Query: 732 PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF-SFMRQHDLNVFCIQEIRCPLEKLP 790
+ I + N+NG+ + ++ S+++ D +V CIQE
Sbjct: 5 NSHITILTLNINGLNSA------------IKRHRLASWIKSQDPSVCCIQETHLTCRDTH 52
Query: 791 -ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSD 849
+G+ + +Q AGVA+L K D
Sbjct: 53 RLKIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKR--------------------D 92
Query: 850 MESGPSHPELTTIQYADASGIDDGRV----MTVEYEQFYLVNVYAP-AAKEDLSMLSVKL 904
E G +++ E+ ++N+YAP
Sbjct: 93 KE---------------------GHYIMVKGSIQQEELTILNIYAPNTGAPRF-----IK 126
Query: 905 LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL 964
S L+ L ++ GD N + +D + + S
Sbjct: 127 QVLSDLQRDLD-----SHTLIMGDFNTPLSTLDRSTRQKVNKD------TQELNSALHQA 175
Query: 965 GFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDH 1024
+D++R L+P YT++ ++D+ + SK L S EI + SDH
Sbjct: 176 DLIDIYRTLHPKSTEYTFFSAPHH----TYSKIDHIVGSKALLSKCKRTEIITNY-LSDH 230
Query: 1025 APQILYL 1031
+ L L
Sbjct: 231 SAIKLEL 237
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 161 bits (409), Expect = 1e-44
Identities = 74/319 (23%), Positives = 118/319 (36%), Gaps = 85/319 (26%)
Query: 736 KIGSWNVNGIRA-WSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP- 793
KI ++NVN IR+ V +++++ ++ C+QE + K PE
Sbjct: 3 KIATFNVNSIRSRLHIV--------------IPWLKENKPDILCMQETKVENRKFPEADF 48
Query: 794 --EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
GYH + G++ GVA+ S +P V+ G
Sbjct: 49 HRIGYHVVFS-GSKG-RNGVAIASLEEPEDVSFGL------------------------- 81
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP----------AAKEDLSMLS 901
S P+ D+ R++ + ++N Y P K
Sbjct: 82 --DSEPK------------DEDRLIRAKIAGIDVINTYVPQGFKIDSEKYQYK------- 120
Query: 902 VKLLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
L W L +L+ ++ V GD+NVA IDV P F R +
Sbjct: 121 --LQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKK 178
Query: 961 FLDLGFLDVHRHLYPNHRIYTYWPYYDRPS--KMKGWRLDYFLISKQLKSHLSDLEIHGD 1018
L+LGF+DV R ++PN RIYT++ Y + + + GWR D L + L D
Sbjct: 179 ILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIK 238
Query: 1019 VEG----SDHAPQILYLNL 1033
SDH P + ++
Sbjct: 239 PRLAEKPSDHLPLVAVFDV 257
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 157 bits (400), Expect = 2e-43
Identities = 69/317 (21%), Positives = 125/317 (39%), Gaps = 83/317 (26%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP-- 793
K S+N+NG+RA + ++L + + +H +V +QE + + P
Sbjct: 2 KFVSFNINGLRA--RPHQLE-----------AIVEKHQPDVIGLQETKVHDDMFPLEEVA 48
Query: 794 -EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY+ F+ G + G+ GVA+L+K P+ V GF
Sbjct: 49 KLGYNVFYH-GQK-GHYGVALLTKETPIAVRRGF-------------------------- 80
Query: 853 GPSHPELTTIQYADASGIDD-GRVMTVEYEQ----FYLVNVYAPA--AKEDLSMLSVKLL 905
P E + R++ E ++N Y P +++ K
Sbjct: 81 -PGDDE------------EAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQ 127
Query: 906 WNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTNL------GKSGFTIQERNYF 958
+ L+ +L++ L PV++ GD+N++ +D+ + N GK F +ER +
Sbjct: 128 FYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWM 187
Query: 959 SNFLDLGFLDVHRHLYPN-HRIYTYWPY----YDRPSKMKGWRLDYFLISKQLKSHLSDL 1013
+ G +D RH P ++++ Y +D +G R+D L S+ L +
Sbjct: 188 DRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDN---RGLRIDLLLASQPLAECCVET 244
Query: 1014 EIHGDVEG----SDHAP 1026
I ++ SDHAP
Sbjct: 245 GIDYEIRSMEKPSDHAP 261
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 149 bits (378), Expect = 2e-40
Identities = 69/320 (21%), Positives = 112/320 (35%), Gaps = 89/320 (27%)
Query: 736 KIGSWNVNGIRA-WSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP- 793
KI +WNVN + QV + + + ++ +QE++ +K P
Sbjct: 2 KITTWNVNSLNVRLPQV--------------QNLLADNPPDILVLQELKLDQDKFPAAAL 47
Query: 794 --EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
G+H W G + Y GVA++S++ P V G D +
Sbjct: 48 QMMGWHCVWS-GQKT-YNGVAIVSRSVPQDVHFGLP----------ALP-------DDPQ 88
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAP----------AAKEDLSMLS 901
RV+ ++NVY K
Sbjct: 89 R---------------------RVIAATVSGVRVINVYCVNGEALDSPKFKYK------- 120
Query: 902 VKLLWNSFLRGHLKS-LNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSN 960
W + L ++ + +VL GD N+A D P K + ER +F N
Sbjct: 121 --EQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQN 178
Query: 961 FLDLGFLDVHRHLYPNHRIYTYWPY----YDRPSKMKGWRLDYFLISKQLKSHLSDLEIH 1016
LDLG D R ++P YT++ Y + R G R+D+ L+S + + L D+ +
Sbjct: 179 LLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRK---LGLRIDHILVSPAMAAALKDVRVD 235
Query: 1017 GDVEG----SDHAPQILYLN 1032
+ SDHAP +
Sbjct: 236 LETRALERPSDHAPVTAEFD 255
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein;
2.40A {Bombyx mori} SCOP: d.151.1.1
Length = 245
Score = 91.2 bits (225), Expect = 2e-20
Identities = 33/300 (11%), Positives = 69/300 (23%), Gaps = 75/300 (25%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+++ N+ + + + IQE K +
Sbjct: 19 PYRVLQANLQRKKL-------------ATAELAIEAATRKAAIALIQEPYVGGAKSMKGF 65
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
G F G A+ + V + +V
Sbjct: 66 RGVRVFQSTAQGDGTVKAAIAVFDHDLDVIQYPQLTTNNIV------------------- 106
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+ + LV+ Y K S L +
Sbjct: 107 -------------------VVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPK 147
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
++ GD N + +E + + L ++ H+
Sbjct: 148 --------RLIFGGDANAKSTW--------------WGSKEDDARGDQLMGTLGELGLHI 185
Query: 974 YPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ T+ R K R+D ++ + + + D+ SDH + + L
Sbjct: 186 LNEGDVPTFDTI--RGGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIRL 243
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 1e-09
Identities = 74/483 (15%), Positives = 137/483 (28%), Gaps = 138/483 (28%)
Query: 41 ILSSKPPFPSLKYSYSTFRWNETRPTTMFVTINRRHEYDFLYS----------------- 83
I+ SK + T + FV R Y FL S
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 84 ---DREC---QVVRKKRVSPSREMH-LKDILATFDSEDGAIV------------VDASRR 124
DR QV K VS + L+ L ++ +D
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 125 DRKELKEP------TL-----PEDLFDDLECESLHVSELKDENDENIGAQSQVIHD---- 169
+ + K L PE + + L+ + ++ IH
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 170 --SLFKHRNRTES-------HSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDL 220
L K + + + F + + K I T+ K V D L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA--------F--NLSCK-ILLTTRFKQV-TDFL 281
Query: 221 KNVLNLFASED---GGYVP-----VLKKSVEISQEKEPTLPAILMGNSELHVS----EME 268
S D P +L K ++ + LP ++ + +S +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAESIR 338
Query: 269 ENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDK--YSKSQH 326
+ + H VN D+ + I E +++ E +E + +
Sbjct: 339 DGLATWDNWKH------VNCDKLTTI------------IESSLNVLEPAEYRKMFD---- 376
Query: 327 GDL----NDIYFPSNLYHKKTFKTTAGSSENI---LLKGLLMNRKSTQPRHSIST--SKN 377
L + P+ L F + L K L+ ++ + SI + +
Sbjct: 377 -RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 378 RSPTQNEIDM---IVENFISVQRKFSLNTVRPVT-----------HFLNVSNEESYEKYT 423
+ +NE + IV+++ ++ + F + + P H N+ + E
Sbjct: 436 KVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--L 492
Query: 424 FRK 426
FR
Sbjct: 493 FRM 495
Score = 60.3 bits (145), Expect = 3e-09
Identities = 96/624 (15%), Positives = 167/624 (26%), Gaps = 181/624 (29%)
Query: 279 HREVKSDVNEDQESNIKI--------VRDLD-SEVINSEQTVDRTESSEDKYSKSQHGDL 329
H + + E Q I V + D +V + +++ E + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--AV 61
Query: 330 NDIYFPSNLYHKKTFKTTAGSSENILLK--GLLMNRKSTQPRHSISTSKNRSPTQNEIDM 387
+ K + E +L LM+ T+ R P+ M
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---------QPS-----M 107
Query: 388 IVENFISVQRKFSLNTVRPVTHFLNVSNEESYEK-----YTFRKRK--------GKTKTT 434
+ +I QR N + + NVS + Y K R K G KT
Sbjct: 108 MTRMYIE-QRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 435 RIKTTKYSDKSTKRRGRPKKTTTPSGGI--ISSPSKNT------------RKHDKKYTTN 480
+ + I ++ + N+ + D +T+
Sbjct: 166 VALDV-CLSYKVQCK--------MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 481 SE---SIQTSVSNIRDSTSRNLKTKSV--------NIEDKSESASTATLK---------- 519
S+ +I+ + +I+ R LK+K N+++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK------AWNAFNLSCKILL 270
Query: 520 -TIGKEDKDFISRPVKSSRVSTKIQLDHSVKKSQKQGLTKYESQP---SSTSTSTDVLP- 574
T K+ DF+S + +T I LDH LT E + LP
Sbjct: 271 TTRFKQVTDFLS-----AATTTHISLDHHSM-----TLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 575 -AHK-----MSLAPERKIAQFNNRN---KLVLLHTKTTHVKTVPSENVQNT---KGKFEL 622
+S+ E I K V TT +++ S NV + F+
Sbjct: 321 EVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDR 377
Query: 623 L----KEIK-----FERTGSEDTSEDVEESGFFTVEPIPDSNLYNEW------------- 660
L + DV V + +L +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 661 EYRPPKRKKAS--RKNVFSFKLNEIHVGTGKIENRLGCDS----------SNETSYAEVE 708
E + + + R V + + + I L D N +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMT 491
Query: 709 EVPIIDFNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQ------ 762
++ + FR LE K R D WN N Q+ I
Sbjct: 492 LFRMVFLD--FRFLEQKIRHDSTAWNASGSILNT-----LQQLKFYKPYICDNDPKYERL 544
Query: 763 -KDGFSFMRQHDLNVFCIQEIRCP 785
F+ + + N+ I
Sbjct: 545 VNAILDFLPKIEENL-----ICSK 563
Score = 37.9 bits (87), Expect = 0.023
Identities = 88/646 (13%), Positives = 169/646 (26%), Gaps = 212/646 (32%)
Query: 474 DKKYTTNSE-SIQTS--VSNIRDSTSRNLKTKSV--NIEDKSESASTATLKTIGKEDKDF 528
D K + SI + + +I S T + + K E ++ + + + F
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 529 ISRPVKSSRVSTKIQLDHSVKKSQKQGLTK-YESQPSSTSTSTDVLPAHKMSLAPERKIA 587
+ P+K+ ++ Q +T+ Y Q V K +++ +
Sbjct: 94 LMSPIKT-------------EQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYL 138
Query: 588 QFNN------RNKLVLLHT-----KTTHVKTVPSENVQNTKGKFELLKEIKFE----RTG 632
+ K VL+ KT V + +++ ++ F+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDV----CLS----YKVQCKMDFKIFWLNLK 190
Query: 633 SEDTSEDVEE---SGFFTVEPIPDSNLYNEWEYRPPKRK---KASRKNVFSFKLNEI--- 683
+ ++ E V E + ++P + ++ R +A + + K E
Sbjct: 191 NCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 684 ---HVGTGKIENR--LGC-------DSS--NETSYAEVEEVPIIDFNDPF---------- 719
+V K N L C + S A + + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 720 RILEHK----RRQDQYPWNFKIGSWNVNGIRA-----------WSQVN--KLFTSI--FL 760
+ L+ + R+ ++ I W VN KL T I L
Sbjct: 309 KYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 761 QQKDGFSFMRQH--DLNVFCIQEIRCPLE-KLPECPEGYHAFWFPGTRQGYAGVAVLSKT 817
+ + R+ L+VF P +P WF +
Sbjct: 364 NVLE-PAEYRKMFDRLSVF-------PPSAHIPT--ILLSLIWFDVIKS----------- 402
Query: 818 KPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMT 877
+ V + +V + +E + +
Sbjct: 403 DVMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------ 448
Query: 878 VEYEQFYLVNVYAPAAKEDLSMLSVKLL---WNSFLRGHLKSLNEIKPVVLAGDLNVAHN 934
+V+ Y D L L + S + HLK++
Sbjct: 449 -------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-------------- 487
Query: 935 HIDVALPLTNLGKSGFTIQERNYFSN-FLDLGFLDVH-RH-------------------L 973
+ F FLD FL+ RH
Sbjct: 488 ------------------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 974 YPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDV 1019
Y + I P Y+R + FL + S + D+
Sbjct: 530 YKPY-ICDNDPKYERLVNA----ILDFLPKIEENLICSK---YTDL 567
Score = 37.9 bits (87), Expect = 0.023
Identities = 50/301 (16%), Positives = 84/301 (27%), Gaps = 88/301 (29%)
Query: 752 NKLFTSIFLQQ-KDGFSFMRQHDL--NVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGY 808
K S+F D F D+ ++ +EI + FW
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-------- 69
Query: 809 AGVAVLSKTKPVRVTHGFSMKVGGVVHT-HGF--NRGSNEHGSDMESGPSHPELTTIQYA 865
+K + F V V+ + F + E P + T Y
Sbjct: 70 -----TLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTE--------QRQPSMMTRMY- 112
Query: 866 DASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVL 925
++ L N AK ++S ++ LR L L K V++
Sbjct: 113 -------------IEQRDRLYNDNQVFAKYNVS--RLQPYLK--LRQALLELRPAKNVLI 155
Query: 926 AGDLNVAHNHIDVALPLTNLGKS--------GFTIQERNYFSNF-LDLG----------- 965
G L GK+ + +Q + F F L+L
Sbjct: 156 DGVLGS--------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 966 FLDVHRHLYPNH--RIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSD 1023
+ + PN R R ++ L L SK ++ L L +V+ +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLL---NVQNAK 257
Query: 1024 H 1024
Sbjct: 258 A 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 5e-08
Identities = 89/514 (17%), Positives = 151/514 (29%), Gaps = 160/514 (31%)
Query: 595 LVLLHTKTTHVKTVPSENVQNTKGKFELLKEIKFERTGSEDTSEDVEESGFFTVEPIPDS 654
L L H HV VP+ + L+E +F + E T + EP +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFI----ASQLQE-QFNKILPEPTEGFAADD-----EPTTPA 58
Query: 655 NLYNEW----EYRPPKRKKASRKNVFSFKL----------NEIHVGTGKIENRLGCDSSN 700
L ++ K V + L N+IH K+ N
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL------LQEN 112
Query: 701 ETSYAEVEEVPIIDFNDPFRILEHKRRQDQYPWN---FKIGSWNVNGIRAWSQVNKLFTS 757
+T+ + +E+ I ++ +R N F+ +L
Sbjct: 113 DTTLVKTKEL-IKNY---ITARIMAKRPFDKKSNSALFR---------AVGEGNAQLVA- 158
Query: 758 IFLQQ---KDGFSFMRQ-----HDLNVFCIQEIRCPLEKLPECPEGYHAFWFPGTRQGYA 809
IF Q D F +R H L I+ L +L F QG
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FT---QGLN 214
Query: 810 GVAVLSK--TKPVR---VTHGFSMKVGGVV---------HTHGFN--------RGSNEHG 847
+ L P + ++ S + GV+ GF +G+ H
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 848 SDMESGPSHPELTTIQYADASGIDD-----GRVMT------VEYEQFYLVNVYAPAAKED 896
+ +T + A+ + + +T V + Y P+ ED
Sbjct: 275 QGL--------VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 897 L---------SMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGK 947
MLS+ L ++ ++ N P A ++++L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP---------AGKQVEISL------- 370
Query: 948 SGFTIQERNYFSNF------LDL-GF-LDVHRHLYPN----HRIYTYWPYYDRPSKMKGW 995
N N L G L + + P+ RI P+ +R K
Sbjct: 371 -------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI----PFSERKLKF-SN 418
Query: 996 RLDYFL-ISKQLKSHLSDLE-----IHGDVEGSD 1023
R FL ++ SHL L I+ D+ ++
Sbjct: 419 R---FLPVASPFHSHL--LVPASDLINKDLVKNN 447
Score = 55.1 bits (132), Expect = 1e-07
Identities = 79/524 (15%), Positives = 160/524 (30%), Gaps = 185/524 (35%)
Query: 179 ESHSPEPLKMTN---------PREDY-------DFFSDFNVKPIRKTSANKSVKADDLKN 222
+++S PL +++ P + + F+ +P +A+ D+
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-----DEPTT 56
Query: 223 VLNLFA------------SEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELH--VSEME 268
L S+ G + VL + E E L GN ++H +++
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL---TEFENC---YLEGN-DIHALAAKLL 109
Query: 269 ENNDDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDKYSKS---- 324
+ ND + +K +K+ + + + +S + + + ++
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF---------RAVGEGNAQLVAIF 160
Query: 325 --QHGDLNDIYFP--SNLYHKKTFKTTAG-----SSENILLKGLLMNRKSTQPRHSIS-- 373
Q G+ +D YF +LY +T+ G S+E L L+ + +
Sbjct: 161 GGQ-GNTDD-YFEELRDLY--QTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLN 214
Query: 374 -----TSKNRSPTQNEIDMIVENFISVQRKFSLNTVRPVTHFLNVSNEESYEKYTFRKRK 428
+ + +P + + +S+ L V + H+ K
Sbjct: 215 ILEWLENPSNTPDK-------DYLLSIPISCPLIGVIQLAHY-----------VVTAKLL 256
Query: 429 GKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTTNSESIQTSV 488
G T P R + K T +S+ + T+V
Sbjct: 257 GFT----------------------------------PG-ELRSYLKGATGHSQGLVTAV 281
Query: 489 SNIRDSTSRNLKTKSVNIEDKSESASTATLKT---IGKEDKDFISRPVKSSRVSTKIQLD 545
+ I ++ S E S A + IG + + P S S
Sbjct: 282 A-IAETDSW---------ESFFVSVRKA-ITVLFFIGVRCYE--AYPNTSLPPSI----- 323
Query: 546 HSVKKSQKQGLTKYESQPSS----TSTSTDVLPAH----KMSLAPERK--IAQFNNRNKL 595
++ S + E PS ++ + + + + L ++ I+ N L
Sbjct: 324 --LEDSLENN----EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 596 VL------LHTKTTHVKTV--PSENVQNTKGKFELLKEIKF-ER 630
V+ L+ ++ PS Q+ I F ER
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQS---------RIPFSER 412
Score = 47.4 bits (112), Expect = 3e-05
Identities = 45/266 (16%), Positives = 76/266 (28%), Gaps = 91/266 (34%)
Query: 817 TKPVRVTHG---FSMKVGGVVHTHG------FNRGSNEHGSDMESGPSHPELTTIQYADA 867
T+P+ ++HG + V FN+ PE T +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-------------ILPEPT-----EG 47
Query: 868 SGIDDGRVMTVE-YEQF--YLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVV 924
DD E +F Y+ ++ P+ + + L F +L+ N+I
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEG-NDI---- 101
Query: 925 LAGDLNVAHNHIDVALPL-----TNLGKSGFTIQERNYFS--NFLDLGFLDVHRH-LY-- 974
H +A L T L K+ I +NY + F L+
Sbjct: 102 --------H---ALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRA 148
Query: 975 ---PNHRIYT----------YWP----YYDRPSKMKGWRLDYFLISKQLKSHLSDLEI-- 1015
N ++ Y+ Y + G D S + S L +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG---DLIKFSAETLSELIRTTLDA 205
Query: 1016 -----HG-DV----EGSDHAPQILYL 1031
G ++ E + P YL
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYL 231
Score = 40.8 bits (95), Expect = 0.003
Identities = 98/622 (15%), Positives = 188/622 (30%), Gaps = 205/622 (32%)
Query: 121 ASR-RDR--KELKEPTLPEDLFDDLECESL---------HVSELKDENDENIGAQSQVIH 168
AS+ +++ K L EPT E D E + +VS L + + +G QV++
Sbjct: 30 ASQLQEQFNKILPEPT--EGFAADDEPTTPAELVGKFLGYVSSLVEPS--KVGQFDQVLN 85
Query: 169 DSL--FKHR--NRTESHS-----PEPLKMTNPREDY---DFFSDFNV--KPIRK--TSA- 211
L F++ + H+ + T + ++ + + +P K SA
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 212 NKSVKADDLKNVLNLFASEDGGYVPVLKKSVEISQEKEPTLPAILMGNSELHVSEMEENN 271
++V + + ++ +F GG Q GN++ + E+ +
Sbjct: 146 FRAVGEGNAQ-LVAIF----GG------------Q-----------GNTDDYFEELRD-- 175
Query: 272 DDSNIKLHREVKSDVNEDQESNIKIVRDLDSEVINSEQTVDRTESSEDKYSKS-QHG-DL 329
L++ +V DL + S +T+ + K G ++
Sbjct: 176 ------LYQTYHV-----------LVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 330 -----NDIYFPSNLY-----------------HKKTFKTTAGSSENIL---LKGLLMNRK 364
N P Y H G + L LKG + +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 365 STQPRHSISTSKN-RSPTQNEIDMIVENF-ISV--QRKFSLNTVRPVTHFLNVSNEESYE 420
+I+ + + S + I F I V + ++ P ++ N E
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--- 332
Query: 421 KYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTTN 480
G P +P I + + + + K TN
Sbjct: 333 -----------------------------GVP----SPMLSISNLTQEQVQDYVNK--TN 357
Query: 481 -----SESIQTSVSNIRDS-----TSRNLKTKSVNIEDKSESASTATLKTIGKEDK---- 526
+ ++ S+ N + ++L ++ + + + E K
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 527 -DF--ISRPVKSS---RVSTKIQLD---HSVKKSQKQ-GLTKYESQPSSTSTSTDVLPAH 576
F ++ P S S I D ++V + K + Y T +D L
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-----DTFDGSD-LRVL 471
Query: 577 KMSLAPERKIAQFNNRNKL---VLLHTKTTHVKTV---PSENVQNTKGKFELLKEIKFER 630
S++ +I R + K TH+ + P G L K +
Sbjct: 472 SGSISE--RIVDCIIRLPVKWETTTQFKATHI--LDFGPG----GASGLGVLTHRNK-DG 522
Query: 631 TGSE-------DTSEDVEESGF 645
TG D + D ++ GF
Sbjct: 523 TGVRVIVAGTLDINPD-DDYGF 543
Score = 37.3 bits (86), Expect = 0.034
Identities = 89/632 (14%), Positives = 173/632 (27%), Gaps = 206/632 (32%)
Query: 325 QHGDLN-DIYFPSNLY-----HKKTF-KTTAGSSENILLKGLLMNRKSTQPRHSIS---- 373
HG L + P+ + ++ F K +E +P
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF--------AADDEPTTPAELVGK 63
Query: 374 -----TSKNRSPTQNEIDMIVEN-FISVQRKF-SLNTVRPVTHFLNVSNEESYEKYTFRK 426
+S + D ++ + + N + H L + + T K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI----HALAAKLLQENDT-TLVK 118
Query: 427 RKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSGGIISSPSKNTRKHDKKYTT-----NS 481
K + + + RP + S + N + N+
Sbjct: 119 TK------ELIKNYITARIMA--KRPFDKKSNSALFRAVGEGNAQL----VAIFGGQGNT 166
Query: 482 E-------SI-QTSVSNIRD---STSRNLKTKSVNIEDKSESASTATLKTIGKEDKDFIS 530
+ + QT + D ++ L + + T G +++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELI------RTTLDAEKVFTQGLNILEWLE 220
Query: 531 RPVK--------SSRVSTKI----QLDHSVKKSQKQGLTKYESQPSSTSTST---DVLPA 575
P S +S + QL H V ++ G T E + + ++ A
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 576 HKMSLAPERKIAQF--NNRNKLVLL-------HTKTTHVKTVPSENVQ----NTKG---- 618
++ F + R + +L + + ++P ++ N +G
Sbjct: 281 VAIAETDSW--ESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 619 --------KFELLKEI-KFERTGSEDTSEDVEESGFFTVEPIPDSNLYNEWEYRPPKRKK 669
+ ++ + K + VE S L N
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAG--KQVEIS------------LVN----------- 372
Query: 670 ASRKNVFSFKLNEIHVGTG-------------KIENRLGCDSSNETSYAEVEEVPIIDF- 715
KN+ V +G K + G D S ++E + F
Sbjct: 373 -GAKNL---------VVSGPPQSLYGLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFL 421
Query: 716 --NDPFRILEHKRRQDQY--PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQ 771
PF H P + I V +++ + ++ DG S +R
Sbjct: 422 PVASPF----H----SHLLVPASDLINKDLVKNNVSFNA-KDIQIPVY-DTFDG-SDLRV 470
Query: 772 HDLNVF-----CIQEIRCPL--EKLPECPEGYHAFWF-PGTRQGYAGVAVLSKTKPVRVT 823
++ CI IR P+ E + H F PG G +G+ VL+ R
Sbjct: 471 LSGSISERIVDCI--IRLPVKWETTTQFKAT-HILDFGPG---GASGLGVLTH----RNK 520
Query: 824 HGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
G ++V +V ++ P
Sbjct: 521 DGTGVRV--IV------------AGTLDINPD 538
Score = 33.9 bits (77), Expect = 0.40
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 58/182 (31%)
Query: 61 NETRPTTMFVTINRRHEYDFLYSDRECQV---VRK--KRVSPSREMHLKDILATFDSEDG 115
NE P+ M N E QV V K + +++ ++ +
Sbjct: 331 NEGVPSPMLSISNLTQE----------QVQDYVNKTNSHLPAGKQVE----ISLVNGAK- 375
Query: 116 AIVVDASRRDRKELKEPTLPEDLFDDLECESLHVSELKDENDENIGAQSQVIHDSLFKHR 175
+VV + P P+ L+ L +L + + K + + QS++
Sbjct: 376 NLVV-SG---------P--PQSLY-GL---NLTLRKAKAPSGLD---QSRI------PFS 410
Query: 176 NRTESHSPEPLKMTNPREDYDFFSDFNVKPIRKTSANKSVKADDLKNVLNLFASEDGGYV 235
R S L + +P F S A+ + D +KN ++ A + +
Sbjct: 411 ERKLKFSNRFLPVASP-----FHSHLL------VPASDLINKDLVKNNVSFNAKDIQ--I 457
Query: 236 PV 237
PV
Sbjct: 458 PV 459
Score = 31.9 bits (72), Expect = 1.3
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 41/125 (32%)
Query: 161 GAQSQ-----------VIHDSLF----KHRNRTESHSPEPLKMTNPREDYDFFSDFNVKP 205
G+Q Q D ++ H T S + + NP F K
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQD-VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 206 IR--------KTSANKSVKADDLKNVLN------LFASEDGGYVPVLKKSVEISQEKEPT 251
IR +T + +K + + +N F SE G +L + + +Q
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG----LLSAT-QFTQ----- 1733
Query: 252 LPAIL 256
PA+
Sbjct: 1734 -PALT 1737
Score = 30.0 bits (67), Expect = 6.2
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 41/137 (29%)
Query: 245 SQEKEPTLPAILMGNSELHVSEMEENNDDSNIKLHREV--KSDVNEDQE---SNIKIVRD 299
SQE+ MG M+ K ++V ++D + S + IV +
Sbjct: 1626 SQEQG-------MG--------MDLYK---TSKAAQDVWNRADNHFKDTYGFSILDIVIN 1667
Query: 300 LDSEVIN-SEQTV----DRTESSEDKYSKSQHGDLNDIYFPSNLYHKKTFKTTAGSSENI 354
N T+ ++ + + YS + D L +K FK S +
Sbjct: 1668 ------NPVNLTIHFGGEKGKRIRENYSAMIFETIVD----GKLKTEKIFKEINEHSTSY 1717
Query: 355 LL---KGLLMNRKSTQP 368
KGLL + TQP
Sbjct: 1718 TFRSEKGLLSATQFTQP 1734
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest
center for structural genomics; 2.99A {Leptotrichia
buccalis c-1013-b}
Length = 266
Score = 54.5 bits (131), Expect = 5e-08
Identities = 47/328 (14%), Positives = 83/328 (25%), Gaps = 110/328 (33%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEI------------- 782
KI + N + AW + N++ L + + + +V +QE+
Sbjct: 5 KILTVN---VHAWLEENQMEKIDILAR-----TIAEKQYDVIAMQEVNQLMNNKIIFDDI 56
Query: 783 ------RCPLEKLPE-CPEGYHAFWFP---GTRQGYAGVAVLSKTKPVRVTHGFSMKVGG 832
LE L + Y+ W G + GVAV+++ ++ F
Sbjct: 57 REENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVITRH-KIKAEDEFYC---- 111
Query: 833 VVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYE----QFYLVNV 888
I R++++ +
Sbjct: 112 ---------------------TFAQ--------SVRTISARRIVSITINYEGQDIEFYSC 142
Query: 889 YAPAAKEDLSMLSVKLLWNSFLRGHLKSLNEIK-------PVVLAGDLNVAHNHIDVALP 941
+ L N K++ I +L GD N
Sbjct: 143 HMN-------------LPNCETEDMGKNIQTILNRTQNSNLKILMGDFNTDAIG------ 183
Query: 942 LTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDR-PSKMKGWRLDYF 1000
+ N L G D + T + RLDY
Sbjct: 184 ------------NVAAYENILSQGLFDTYVMAEKKDDGITVDKSIHGWDNDKAKKRLDYI 231
Query: 1001 LISKQLKSHLSDLEIHGDVEG--SDHAP 1026
+K+LK S + + + SDH
Sbjct: 232 FSNKELKVKESKVIFNNKNKEIVSDHFG 259
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein;
alpha-beta protein, structural genomics, PSI-2; 2.50A
{Bacteroides vulgatus atcc 8482}
Length = 267
Score = 44.9 bits (106), Expect = 6e-05
Identities = 40/307 (13%), Positives = 83/307 (27%), Gaps = 70/307 (22%)
Query: 734 NFKIGSWNV------NGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-- 785
+ + ++N+ + + W F++ H+L++ +QE+
Sbjct: 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQ----------FIKDHELDIVGMQEVLHNQF 52
Query: 786 ---LEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRG 842
LPE + + + V
Sbjct: 53 QDLRAGLPEY--DGIGVGRDDGKTAGEYAPLFYRKDKYEVLD------------SNTFWL 98
Query: 843 SNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSV 902
+ S G + +A G++ VN + E+ S
Sbjct: 99 AENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMA-------VNTHFDHVGEEARRQSA 151
Query: 903 KLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFL 962
L+ +K + +P V+ GD NV D +T
Sbjct: 152 LLIIR-----KIKEIVGERPAVVTGDFNVTDAS-DAYETITTNE---------------- 189
Query: 963 DLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG- 1021
D ++ + + + R ++D+ ++ Q+ + EI +V
Sbjct: 190 -FVMKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQVL--VKSCEIPAEVPEA 246
Query: 1022 --SDHAP 1026
SDH P
Sbjct: 247 LLSDHNP 253
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta
sandwich, gene regulation; 2.00A {Bombyx mori}
Length = 240
Score = 41.9 bits (97), Expect = 5e-04
Identities = 37/300 (12%), Positives = 79/300 (26%), Gaps = 87/300 (29%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+IG N+ G ++ S R L++ +QE
Sbjct: 7 RLRIGQINLGGAED-------------ATRELPSIARDLGLDIVLVQE--------QYSM 45
Query: 794 EGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESG 853
G+ A + V + + + + +
Sbjct: 46 VGFLAQC-----GAHPKAGVYIRNRVLPCAVLHHLSSTHITVV----------------- 83
Query: 854 PSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
+ Y+V+ Y + L G+
Sbjct: 84 -----------------------HIGGWDLYMVSAYFQYSDPIDPYLH--------RLGN 112
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
+ VV+ D N AH+ + +LP +G+ R +F+ L V
Sbjct: 113 ILDRLRGARVVICADTN-AHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVV---H 168
Query: 974 YPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLNL 1033
+ + T+ +D L ++ ++ +S+ + + SDH + +
Sbjct: 169 NADGHLPTFSTA------NGESYVDVTLSTRGVR--VSEWRVTNE-SSSDHRLIVFGVGG 219
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus
faecalis V583, PSI-2, MCSG, structural genomics; 1.60A
{Enterococcus faecalis}
Length = 257
Score = 39.6 bits (92), Expect = 0.003
Identities = 43/299 (14%), Positives = 78/299 (26%), Gaps = 64/299 (21%)
Query: 736 KIGSWNV------NGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCP-LEK 788
KI ++NV + WS + + HD ++ CIQE+R +
Sbjct: 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQ----------LINFHDWSLCCIQEVRPNQVRD 51
Query: 789 LPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGS 848
L G+A+L + V+ + T F +E
Sbjct: 52 LKAYTTFTCLSAEREGDGQGEGLAILYNEQKVQA-----------IDTGYFWL--SETPQ 98
Query: 849 DMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNS 908
P + V +NV+ + + ++
Sbjct: 99 QPSIHPEAGCPRIALWGLFKETTQNTPFLV-------INVHLDHISAHARLAGMTVILE- 150
Query: 909 FLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLD 968
L P +L GD N G+ + ++ F D
Sbjct: 151 ----ELHDKIAQYPTLLMGDFN------------AESGEEVHQLVQK---------KFQD 185
Query: 969 VHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISK-QLKSHLSDLEIHGDVEGSDHAP 1026
T+ + + +DY + Q++ S + SDH P
Sbjct: 186 SKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYVKGWQVQQTASLTDSIDGRFPSDHFP 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.19
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 16/35 (45%)
Query: 552 QKQGLTKYESQ-----PSSTSTSTDVLPAHKMSLA 581
+KQ L K ++ S PA LA
Sbjct: 18 EKQALKKLQASLKLYADDSA-------PA----LA 41
Score = 29.5 bits (65), Expect = 2.9
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 16/42 (38%)
Query: 204 KPIRKTSANKSVKADDLKNVLNLFASEDGGYVPVL--KKSVE 243
+ ++K A+ LK L+A + P L K ++E
Sbjct: 20 QALKKLQAS-------LK----LYADDSA---PALAIKATME 47
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase;
1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 33.5 bits (76), Expect = 0.32
Identities = 49/348 (14%), Positives = 94/348 (27%), Gaps = 109/348 (31%)
Query: 729 DQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF--SFMRQHDLNVFCIQEI---- 782
D+YP NFKI S NV + ++ + + + +V + E
Sbjct: 5 DEYPGNFKITSHNV-----YLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTS 59
Query: 783 ---------------RCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFS 827
+ P+ + + GVAV+S+ V
Sbjct: 60 ASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEK----- 114
Query: 828 MKVGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVN 887
H F RG G+D S Y + + ++++
Sbjct: 115 -------SQHIFQRGG---GADRLSNKG------FAYV---------KIMKNGKPYHIIG 149
Query: 888 V-----YAPAAKEDLSMLSVKLLW--NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVAL 940
+ +K+ + + + +F+ +E + + GDLNV +
Sbjct: 150 THTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDE--IIFIGGDLNVNYGT----- 202
Query: 941 PLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYY-----DRPSKMKGW 995
E + L++ N ++ T+ P + K
Sbjct: 203 ------------DEYHDMLKLLNVSSPA-----NFNGQMATWDPTTNSMLKESYPKAAPE 245
Query: 996 RLDYFLISKQLKSHL-----------------SDLEIHGDVEGSDHAP 1026
LDY + S + + + SDH P
Sbjct: 246 YLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYP 293
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Length = 317
Score = 32.0 bits (72), Expect = 0.91
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K++ + + V + GDLNV + L NL + N + +
Sbjct: 201 KNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNG 260
Query: 975 PNHRI-YTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAP 1026
+ Y + + K + + + + + SDH P
Sbjct: 261 KPEHLDYIF--TDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYP 311
>1x8p_A Nitrophorin 4, NP4; lipocalin, beta barrel, ferric heme, ligand
binding protein; HET: HEM; 0.85A {Rhodnius prolixus}
SCOP: b.60.1.1 PDB: 1d3s_A* 1eqd_A* 1erx_A* 1ike_A*
1ikj_A* 1d2u_A* 1ml7_A* 1np4_A* 1u0x_A* 1x8n_A* 1koi_A*
1x8o_A* 1x8q_A* 1ywa_A* 1ywb_A* 1ywc_A* 1ywd_A* 2at4_X*
2at5_X* 2at6_X* ...
Length = 184
Score = 30.1 bits (67), Expect = 2.3
Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 19/143 (13%)
Query: 407 VTHFLNVSNEESYEKYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTTPSG--GIIS 464
VT +L++ ++ ++Y T + ++K Y + + G +
Sbjct: 25 VTDYLDLEPDDVPKRYCA-ALAAGTASGKLKEALYHYDPKTQDTFYDVSELQVESLGKYT 83
Query: 465 SPSKNTRKHDKKYTTNSESIQTSVSNIRDSTS-----RNLKTKSVNIED----------- 508
+ K K+ + + + + S L + ++ D
Sbjct: 84 ANFKKVDKNGNVKVAVTAGNYYTFTVMYADDSSALIHTCLHKGNKDLGDLYAVLNRNKDA 143
Query: 509 KSESASTATLKTIGKEDKDFISR 531
+ + + E FIS
Sbjct: 144 AAGDKVKSAVSAATLEFSKFIST 166
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 30.2 bits (67), Expect = 3.8
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 414 SNEESYEKYTFRKRKGKTKTTRIKTTKYSDKSTKRRGRPKKTTT 457
+ EE T +K + K + ++RGRPKK T
Sbjct: 394 AEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMNT 437
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 30.1 bits (67), Expect = 3.9
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 22/95 (23%)
Query: 915 KSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLY 974
K++ + V++ GD+NV K + +++ L+ Y
Sbjct: 182 KNIPNNEYVLIGGDMNV--------------NKINAENNNDSEYASMFKT--LNASVPSY 225
Query: 975 PNHRIYTYWPYYD-----RPSKMKGWRLDYFLISK 1004
H T+ + LDY + SK
Sbjct: 226 TGHT-ATWDATTNSIAKYNFPDSPAEYLDYIIASK 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,764,640
Number of extensions: 864822
Number of successful extensions: 1286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1226
Number of HSP's successfully gapped: 56
Length of query: 1033
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 930
Effective length of database: 3,825,930
Effective search space: 3558114900
Effective search space used: 3558114900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.3 bits)