RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12564
(1033 letters)
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 113 bits (283), Expect = 2e-28
Identities = 108/327 (33%), Positives = 146/327 (44%), Gaps = 61/327 (18%)
Query: 715 FNDPFRILEHKRRQDQYPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDL 774
+ DP + K P KI SWNV+G+RAW +K G ++++
Sbjct: 2 YEDPP---DQKTSPSGKPATLKICSWNVDGLRAW------------IKKKGLDWVKEEAP 46
Query: 775 NVFCIQEIRCPLEKLPE-----CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMK 829
++ C+QE +C KLP + + P ++GY+GV +LS+ P++V++G +
Sbjct: 47 DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDE 106
Query: 830 VGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889
+GRV+ E++ F LV Y
Sbjct: 107 --------------------------------------EHDQEGRVIVAEFDSFVLVTAY 128
Query: 890 APAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949
P A L L + W+ R LK L KP+VL GDLNVAH ID+ P N +G
Sbjct: 129 VPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAG 188
Query: 950 FTIQERNYFSNFL-DLGFLDVHRHLYPNH-RIYTYWPYYDRP-SKMKGWRLDYFLISKQL 1006
FT QER F L + D RHLYPN YT+W Y SK GWRLDYFL+S L
Sbjct: 189 FTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSL 248
Query: 1007 KSHLSDLEIHGDVEGSDHAPQILYLNL 1033
L D +I GSDH P LYL L
Sbjct: 249 LPALCDSKIRSKALGSDHCPITLYLAL 275
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 112 bits (280), Expect = 4e-28
Identities = 50/311 (16%), Positives = 89/311 (28%), Gaps = 61/311 (19%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPE---C 792
K S+N+NG+RA + + +H +V +QE + + P
Sbjct: 2 KFVSFNINGLRAR-------------PHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVA 48
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
GY+ F+ + +++ G R
Sbjct: 49 KLGYNVFYHGQKGHYGVA--------LLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLL 100
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
G ++ ++ Q + ++
Sbjct: 101 GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRD----------------- 143
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTN------LGKSGFTIQERNYFSNFLDLGF 966
PV++ GD+N++ +D+ + N GK F +ER + + G
Sbjct: 144 --------NPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGL 195
Query: 967 LDVHRHLYPNHRIYTYWPYYDRPSKMK--GWRLDYFLISKQLKSHLSDLEIH----GDVE 1020
+D RH P W Y G R+D L S+ L + I +
Sbjct: 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEK 255
Query: 1021 GSDHAPQILYL 1031
SDHAP
Sbjct: 256 PSDHAPVWATF 266
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 90.2 bits (222), Expect = 9e-21
Identities = 49/299 (16%), Positives = 91/299 (30%), Gaps = 69/299 (23%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP-EC 792
+ I + N+NG+ + + ++L S+++ D +V CIQE
Sbjct: 5 HITILTLNINGLNSAIKRHRL-----------ASWIKSQDPSVCCIQETHLTCRDTHRLK 53
Query: 793 PEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMES 852
+G+ + +Q AGVA+L K G
Sbjct: 54 IKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMV--------------- 98
Query: 853 GPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRG 912
+++ E+ ++N+YAP + V L
Sbjct: 99 ----------------------KGSIQQEELTILNIYAPNTGAPRFIKQVLSDLQRDLDS 136
Query: 913 HLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
H + + + D + + S +D++R
Sbjct: 137 HTLIMGDFNTPLSTLDRSTRQKVNK---------------DTQELNSALHQADLIDIYRT 181
Query: 973 LYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYL 1031
L+P YT++ ++D+ + SK L S EI + SDH+ L L
Sbjct: 182 LHPKSTEYTFFSAPHH----TYSKIDHIVGSKALLSKCKRTEIITNY-LSDHSAIKLEL 235
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 88.9 bits (219), Expect = 3e-20
Identities = 35/323 (10%), Positives = 72/323 (22%), Gaps = 111/323 (34%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLP--- 790
+F++ +WN+ G A + Q ++ +++ +QE P
Sbjct: 4 DFRVATWNLQGASA--TTESKWNINVRQL-----ISGENAVDILAVQEAGSPPSTAVDTG 56
Query: 791 ---------------------ECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMK 829
+ Y F G +A++S + V +
Sbjct: 57 RVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPV- 115
Query: 830 VGGVVHTHGFNRGSNEHGSDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVY 889
++ + +
Sbjct: 116 ---------------------------------------RQGGRPLLGIRIGNDAFFTAH 136
Query: 890 APAAKEDLSMLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSG 949
A A + + + V+ ++N F R +++ ++ GD N
Sbjct: 137 AIAMRNNDAPALVEEVYN-FFRDSRDPVHQALNWMILGDFNREPAD-------------- 181
Query: 950 FTIQERNYFSNFLDLGFLDVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSH 1009
L + + P T LDY + +
Sbjct: 182 --------LEMNLTVPVRRASEIISPA--AATQTS---------QRTLDYAVAGNSVAFR 222
Query: 1010 LS------DLEIHGDVEGSDHAP 1026
S SDH P
Sbjct: 223 PSPLQAGIVYGARRTQISSDHFP 245
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 87.4 bits (215), Expect = 2e-19
Identities = 32/300 (10%), Positives = 62/300 (20%), Gaps = 45/300 (15%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
SWN RA + + +L G + D+ +Q +K + P
Sbjct: 8 HTVSWNSGHERAPTNLEELL---------GLNSGETPDVIAVAVQGFGFQTDKPQQGPAC 58
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
F T +GY + + +
Sbjct: 59 VKNFQSLLTSKGYTKLKNTITETMGLTVYCL---------------------EKHLDQNT 97
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQ--FYLVNVYAPAAKEDLSMLSVKLLWNSFLRGH 913
T I D G V + F + +
Sbjct: 98 LKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTK---YAYDTRLDY 154
Query: 914 LKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHL 973
K + + GDLNV + + + +
Sbjct: 155 SKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFD---QLKKAKEQKLFDGW 211
Query: 974 YPNHRIYTYWPYYDRPS-KMKGWR----LDYFLISKQLKSHLSDL--EIHGDVEGSDHAP 1026
+ + + + D L + L + + ++H P
Sbjct: 212 TEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRP 271
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 78.9 bits (193), Expect = 6e-17
Identities = 32/301 (10%), Positives = 67/301 (22%), Gaps = 79/301 (26%)
Query: 735 FKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPE 794
+++ N+ + + + IQE K +
Sbjct: 3 YRVLQANLQRKKL-------------ATAELAIEAATRKAAIALIQEPYVGGAKSMKGFR 49
Query: 795 GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGP 854
G F G A+ + V + +V
Sbjct: 50 GVRVFQSTAQGDGTVKAAIAVFDHDLDVIQYPQLTTNNIV-------------------- 89
Query: 855 SHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHL 914
+ + LV+ Y K S+L
Sbjct: 90 ------------------VVGIRTRAWEITLVSYYFEPDKP----------IESYLEQIK 121
Query: 915 KSLNEIKP--VVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRH 972
+ ++ P ++ GD N + + +G L
Sbjct: 122 RVERKMGPKRLIFGGDANAKSTWWG---------------SKEDDARGDQLMGTLGELGL 166
Query: 973 LYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGSDHAPQILYLN 1032
+ + R K R+D ++ + + + D+ SDH + +
Sbjct: 167 -HILNEGDVPTFDTIRGGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGMVFNIR 225
Query: 1033 L 1033
L
Sbjct: 226 L 226
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 66.8 bits (161), Expect = 2e-12
Identities = 35/304 (11%), Positives = 72/304 (23%), Gaps = 64/304 (21%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECP 793
+FK+ +WN+ G A + Q + ++ +QE
Sbjct: 4 DFKVATWNLQGSSA--VNESKWNINVRQL-----LSGEQGADILMVQEAGSLPSSAVRTS 56
Query: 794 E--------GYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNE 845
W GTR V + V
Sbjct: 57 RVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANR--------------------- 95
Query: 846 HGSDMESGPSHPELTTIQYADASGIDDGR-VMTVEYEQFYLVNVYAPAAKEDLSMLSVKL 904
+ S S + R + + V+A A ++ ++
Sbjct: 96 VNLAIVSR--RQADEAFIVHSDSSVLQSRPAVGIRIGTDVFFTVHALATGGSDAVSLIRN 153
Query: 905 LWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL 964
++ +F + ++ GD N A +++ + +
Sbjct: 154 IFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE--------------------VALRQEP 193
Query: 965 GFLDVHRHLYPNHRIYTYWPY--YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEGS 1022
+ + P T+ D + L +++ L S
Sbjct: 194 AVSENTIIIAPTE--PTHRSGNILDYA-ILHDAHLPRREQARERIGASLMLNQLRSQITS 250
Query: 1023 DHAP 1026
DH P
Sbjct: 251 DHFP 254
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 57.9 bits (139), Expect = 3e-09
Identities = 42/318 (13%), Positives = 83/318 (26%), Gaps = 38/318 (11%)
Query: 725 KRRQDQY----PWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQ 780
++R++++ + S+N+NG A +++ +F + D+ V Q
Sbjct: 13 RKRENEFSEHKNVKIFVASYNLNGCSATTKLENW---LFPENTP------LADIYVVGFQ 63
Query: 781 EIRCPLEKLPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFN 840
EI + + + + + T G V
Sbjct: 64 EI---------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGY-VQLRSGQLVGT 113
Query: 841 RGSNEHGSDMESGPSHPELTTIQYADASGIDD-GRV---MTVEYEQFYLVNVYAPAAKED 896
+ E T + + G V E + + A +
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 897 LS--MLSVKLLWNSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQE 954
+ + + +S+ VV GD N + + + E
Sbjct: 174 YDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFE 233
Query: 955 RNYFSNFLDLGFLDVHRHLYPNHRIYTYW--PYYDRPSKMKGWRL----DYFLISKQLKS 1008
+ + + G + P TY D R+ D L +L
Sbjct: 234 YDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVP 293
Query: 1009 HLSDLEIHGDVEGSDHAP 1026
H + SDH P
Sbjct: 294 HSYQ---SVPLYYSDHRP 308
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 51.9 bits (122), Expect = 2e-07
Identities = 26/312 (8%), Positives = 73/312 (23%), Gaps = 27/312 (8%)
Query: 734 NFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGF--SFMRQHDLNVFCIQEIRCPLEKLPE 791
K+ + NV + L+ + ++ + + +V + E+
Sbjct: 3 TLKVMTHNVYMLST-----NLYPNWGQTERADLIGAADYIKNQDVVILNEV--------F 49
Query: 792 CPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDME 851
++ AVL ++ G S ++
Sbjct: 50 DNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKI 109
Query: 852 SGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPA-----AKEDLSMLSVKLLW 906
++ + + +++ + A K + + L
Sbjct: 110 QYVFAKGCGPDNLSNKGFV--YTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLK 167
Query: 907 NSFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDL-- 964
K++ + V++ GD+NV + + ++
Sbjct: 168 EIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWD 227
Query: 965 GFLDVHRHLYPNHRIYTYWPY-YDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG-- 1021
+ Y Y ++ ++ +
Sbjct: 228 ATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDY 287
Query: 1022 SDHAPQILYLNL 1033
SDH P +++
Sbjct: 288 SDHYPVEATISM 299
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 51.1 bits (120), Expect = 2e-07
Identities = 36/310 (11%), Positives = 72/310 (23%), Gaps = 66/310 (21%)
Query: 736 KIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEKLPECPEG 795
KI ++N+ N S ++ ++ IQE+R
Sbjct: 2 KIAAFNIRTFGETKMSNATLASYIVRI--------VRRYDIVLIQEVRDSHLVAVGKLLD 53
Query: 796 YHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHGSDMESGPS 855
Y P T + + R F V+ T+ ++ G G+D S
Sbjct: 54 YLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFS--- 110
Query: 856 HPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWNSFLRGHLK 915
+ V+ + A S ++ + ++
Sbjct: 111 ---------------REPAVVKFSSHSTKVKEFAIVALHSAPSDAVAEINSLYDVYLDVQ 155
Query: 916 SLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFLDVHRHLYP 975
+ V+L GD N +++ S + + +
Sbjct: 156 QKWHLNDVMLMGDFNADCSYVT--------------------SSQWSSIRLRTSSTFQWL 195
Query: 976 NHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHLSDLEIHGDVEG-------------- 1021
D +++ L +
Sbjct: 196 IPDSADTTATS------TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAI 249
Query: 1022 SDHAPQILYL 1031
SDH P + L
Sbjct: 250 SDHYPVEVTL 259
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 50.3 bits (118), Expect = 6e-07
Identities = 42/316 (13%), Positives = 71/316 (22%), Gaps = 49/316 (15%)
Query: 731 YPWNFKIGSWNVNGIRAWSQVNKLFTSIFLQQKDGFSFMRQHDLNVFCIQEIRCPLEK-- 788
YP NFKI S NV N + + +V + E
Sbjct: 1 YPGNFKITSHNVYLFSRNIYPNW---GQMHRADLIAQADYMKNNDVVILNEAFDTSASHR 57
Query: 789 -LPECPEGYHAFWFPGTRQGYAGVAVLSKTKPVRVTHGFSMKVGGVVHTHGFNRGSNEHG 847
L E Y R + + G GV +
Sbjct: 58 LLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDG------GVAVVSQWPIVEKSQH 111
Query: 848 SDMESGPSHPELTTIQYADASGIDDGRVMTVEYEQFYLVNVYAPAAKEDLSMLSVKLLWN 907
G + L+ +A + +G+ + +
Sbjct: 112 IFQRGGGADR-LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQ 170
Query: 908 SFLRGHLKSLNEIKPVVLAGDLNVAHNHIDVALPLTNLGKSGFTIQERNYFSNFLDLGFL 967
+F+ +E + + GDLNV + E + L++
Sbjct: 171 TFIAKKNIPKDE--IIFIGGDLNVNYGT-----------------DEYHDMLKLLNVSSP 211
Query: 968 DVHRHLYPNHRIYTYWPYYDRPSKMKGWRLDYFLISKQLKSHL----------------- 1010
T + K LDY +
Sbjct: 212 ANFNGQMATWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVK 271
Query: 1011 SDLEIHGDVEGSDHAP 1026
S + + + SDH P
Sbjct: 272 SWFKTYTYQDFSDHYP 287
>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
putative coronavirus nsp2) {Transmissible
gastroenteritis virus [TaxId: 11149]}
Length = 299
Score = 27.5 bits (61), Expect = 10.0
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 353 NILLKGLLMNRKSTQPRHSISTSKNRSP--TQNEIDMIVENFISVQRKFSLNTVRPVTH- 409
N +L GL + + PRH I++ R + + NF + L V
Sbjct: 24 NNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKG 83
Query: 410 -----FLNVSNEESYEKYTFRKRK 428
+N N + ++ F+ K
Sbjct: 84 VNLVLKVNQVNPNT-PEHKFKSIK 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,627,359
Number of extensions: 168995
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 17
Length of query: 1033
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 939
Effective length of database: 1,116,976
Effective search space: 1048840464
Effective search space used: 1048840464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)