Query psy12566
Match_columns 220
No_of_seqs 205 out of 1063
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:38:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 99.9 9.1E-22 3.1E-26 163.2 9.7 116 84-211 22-146 (206)
2 2e6m_A Werner syndrome ATP-dep 99.8 3.1E-18 1.1E-22 141.1 13.1 118 79-209 13-132 (208)
3 3saf_A Exosome component 10; e 99.7 6.7E-17 2.3E-21 147.1 12.4 120 74-211 101-220 (428)
4 2hbj_A Exosome complex exonucl 99.6 1.6E-15 5.5E-20 137.4 13.1 118 76-211 80-197 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.6 5E-15 1.7E-19 132.5 11.2 111 82-211 2-112 (375)
6 3cym_A Uncharacterized protein 99.2 2.5E-11 8.6E-16 110.8 8.2 113 81-211 16-130 (440)
7 2kfn_A Klenow fragment of DNA 98.6 4.2E-07 1.4E-11 85.8 13.6 118 80-211 4-128 (605)
8 1x9m_A DNA polymerase; DNA plo 97.7 7.7E-05 2.6E-09 71.5 8.5 89 107-211 1-100 (698)
9 3pv8_A DNA polymerase I; DNA p 97.6 0.00015 5.1E-09 68.3 8.9 88 107-211 31-119 (592)
10 4dfk_A DNA polymerase I, therm 96.6 0.00069 2.4E-08 63.1 2.5 82 104-211 9-90 (540)
11 3v9w_A Ribonuclease T; DEDD nu 93.6 0.11 3.8E-06 42.4 5.7 118 86-211 21-180 (235)
12 2p1j_A POLIII, DNA polymerase 87.2 2.6 8.8E-05 32.8 8.0 99 102-210 9-134 (186)
13 2f96_A Ribonuclease T; RNAse, 75.0 12 0.00041 29.7 7.9 44 166-210 125-171 (224)
14 2gui_A DNA polymerase III epsi 70.9 21 0.00073 27.4 8.3 102 104-210 8-141 (194)
15 1bgx_T TAQ DNA polymerase; DNA 63.0 11 0.00036 36.7 5.9 76 107-211 306-382 (832)
16 1wlj_A Interferon stimulated g 60.0 24 0.00083 27.1 6.7 87 104-205 4-113 (189)
17 2dii_A TFIIH basal transcripti 59.5 7.4 0.00025 25.3 2.8 36 5-41 22-57 (61)
18 1w0h_A 3'-5' exonuclease ERI1; 58.6 31 0.0011 26.6 7.1 43 168-210 106-150 (204)
19 2qxf_A Exodeoxyribonuclease I; 52.0 79 0.0027 28.5 9.4 103 102-211 6-146 (482)
20 1zbh_A 3'-5' exonuclease ERI1; 31.9 2.1E+02 0.0073 23.5 10.6 105 104-209 77-217 (299)
21 1xmk_A Double-stranded RNA-spe 31.4 27 0.00094 23.5 2.2 44 8-56 8-52 (79)
22 2xvc_A ESCRT-III, SSO0910; cel 30.2 34 0.0012 21.9 2.3 37 14-54 13-49 (59)
23 1uoc_A POP2; hydrolase, DEDD n 29.9 42 0.0014 28.4 3.6 118 90-211 26-209 (289)
24 2p51_A SPCC18.06C protein; DED 25.9 51 0.0018 28.4 3.5 49 162-210 156-214 (333)
25 4gmj_B CCR4-NOT transcription 24.7 34 0.0012 28.8 2.1 50 162-211 145-204 (285)
26 2d5r_A CCR4-NOT transcription 23.6 37 0.0013 28.1 2.1 49 162-210 135-193 (252)
27 1g2y_A Hepatocyte nuclear fact 22.5 1.1E+02 0.0037 17.0 3.3 22 10-31 6-27 (32)
28 3rco_A Tudor domain-containing 20.7 50 0.0017 22.9 2.0 39 176-220 11-49 (89)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.86 E-value=9.1e-22 Score=163.19 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=91.6
Q ss_pred EEEeCHHHHHHHHHHHh---ccCCCCeEEEeeeeccCCC----CCCC--CCceEEEeEeCCeEEEEEccCCCCCCchhhh
Q psy12566 84 ILVDTADKFASALQDFA---RLDHNSHLGLDTEWKPNLS----GGSP--PTLALLQIATRDRVYILDIITLSKLPCYAQL 154 (220)
Q Consensus 84 ~~Vdt~~~l~~~~~~l~---~l~~~~~VG~D~Ew~p~~~----~~~~--~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~ 154 (220)
.+|.|.+++..++..+. ......+||||+||+|.|. ++.. +++||||||++++|+|||+ ...+| ..
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l--~~~~~---~~ 96 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL--PKPFH---DN 96 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC--CSSCC---GG
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEec--cccCC---cc
Confidence 56667666777777632 1266789999999999871 2233 5999999999999999999 24455 33
Q ss_pred hHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 155 CHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 155 ~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
+.. |..+|+||+|+||||++++|+++|++.|+. .+++++||+.++....+
T Consensus 97 L~~-L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~------~~~~~~Dl~~la~~~lg 146 (206)
T 1vk0_A 97 LKD-LYRFFASKFVTFVGVQIEEDLDLLRENHGL------VIRNAINVGKLAAEARG 146 (206)
T ss_dssp GHH-HHHHHTCSSSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHHT
T ss_pred HHH-HHHHhcCCCceEEEeccHHHHHHHHHhcCC------CcCCeeeHHHHHHHHcC
Confidence 443 679999999999999999999999999998 89999999988765533
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.77 E-value=3.1e-18 Score=141.12 Aligned_cols=118 Identities=22% Similarity=0.383 Sum_probs=94.4
Q ss_pred CCCcEEEEeCHHHHHHHHHHHh-ccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeC-CeEEEEEccCCCCCCchhhhhH
Q psy12566 79 PPNSIILVDTADKFASALQDFA-RLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATR-DRVYILDIITLSKLPCYAQLCH 156 (220)
Q Consensus 79 ~~~~I~~Vdt~~~l~~~~~~l~-~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~-~~v~LiD~~~l~~~~~~~~~~~ 156 (220)
.+++|++|+|+++++.+++.+. .+....+||||+||.+.|..+..+++++||||+. +++|+||+..+...+ .
T Consensus 13 f~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~---~--- 86 (208)
T 2e6m_A 13 FPGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFP---Q--- 86 (208)
T ss_dssp CCSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCC---H---
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccch---H---
Confidence 3678999999999984443321 2888899999999999765456789999999985 789999998765444 2
Q ss_pred HHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHh
Q psy12566 157 DLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKL 209 (220)
Q Consensus 157 ~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l 209 (220)
.|+.+|+|++|.||||++++|+..|.+.+++ .+.|++|+..++..+
T Consensus 87 -~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi------~~~~~fDlt~lAayl 132 (208)
T 2e6m_A 87 -GLKMLLENKSIKKAGVGIEGDQWKLLRDFDV------KLESFVELTDVANEK 132 (208)
T ss_dssp -HHHHHHTCTTSEEEESSHHHHHHHHHHHHCC------CCCSEEEHHHHHHHH
T ss_pred -HHHHHhcCCCceEEEEeeHHHHHHHHHHCCC------CCCCEEEHHHHHHHH
Confidence 3789999999999999999999999988998 788899966655544
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.70 E-value=6.7e-17 Score=147.08 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=103.9
Q ss_pred cccccCCCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhh
Q psy12566 74 YSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQ 153 (220)
Q Consensus 74 ~~l~l~~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~ 153 (220)
...|+...++++|+|+++++++++. +..+.+||||+||.+. .+..+++|+||||+.+.+|+||+..++.
T Consensus 101 ~~~p~~~~~y~~I~t~e~L~~~l~~---L~~~~~vavDtE~~~~--~~~~~~l~lIQLa~~~~~~lidpl~l~~------ 169 (428)
T 3saf_A 101 LYRPIEETPCHFISSLDELVELNEK---LLNCQEFAVNLEHHSY--RSFLGLTCLMQISTRTEDFIIDTLELRS------ 169 (428)
T ss_dssp CCCCGGGSCEEEECSHHHHHHHHHH---HTTCSEEEEEEEEECT--TCSSCEEEEEEEECSSCEEEEETTTTGG------
T ss_pred CCCCCCCCCcEEECCHHHHHHHHHH---HhcCCeEEEEEEecCC--CCCCCeEEEEEEEeCCcEEEEEeccchh------
Confidence 3446777889999999999999999 8889999999999875 3578999999999999999999988731
Q ss_pred hhHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 154 LCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 154 ~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
.+ ..|+.+|+|++|+||||+++.|+..|++.+++ .+.+++|++.+++.+..
T Consensus 170 ~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi------~~~~~fDT~lAa~lL~~ 220 (428)
T 3saf_A 170 DM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGL------YVVNMFDTHQAARLLNL 220 (428)
T ss_dssp GG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHTTC
T ss_pred hH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCC------CcCceeechhHHHHhCC
Confidence 11 13789999999999999999999999988998 68899999998877654
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.64 E-value=1.6e-15 Score=137.41 Aligned_cols=118 Identities=22% Similarity=0.287 Sum_probs=99.4
Q ss_pred cccCCCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhh
Q psy12566 76 LTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLC 155 (220)
Q Consensus 76 l~l~~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~ 155 (220)
.++...++.+|+|.++++++++. +..+.+||||+||.+. .+..+++++||||+.+.+||+|...+.... .
T Consensus 80 ~~~~~~~~~~I~t~~~L~~~~~~---L~~~~~vavDtE~~~~--~~~~~~l~liQla~~~~~ylid~l~l~~~l---~-- 149 (410)
T 2hbj_A 80 KSWDDSVPIWVDTSTELESMLED---LKNTKEIAVDLEHHDY--RSYYGIVCLMQISTRERDYLVDTLKLRENL---H-- 149 (410)
T ss_dssp CCGGGCCCEEECSHHHHHHHHHH---HTTCSEEEEEEEEECS--SSSSCEEEEEEEECSSCEEEEETTTTTTTG---G--
T ss_pred CCcCCCCcEEeCCHHHHHHHHHH---HhhCCceEEEeeecCC--cCCCCcEEEEEEEECCcEEEEechhhhhhH---H--
Confidence 34455678999999999999998 8888999999999874 245789999999999999999986552111 1
Q ss_pred HHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 156 HDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 156 ~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
.|+.+|+|++|+||||++++|+..|++.+++ .+.|++|++.+++.+..
T Consensus 150 --~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi------~~~~~fDt~lAa~LL~~ 197 (410)
T 2hbj_A 150 --ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL------YVVGLFDTYHASKAIGL 197 (410)
T ss_dssp --GGHHHHTCTTSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHTC
T ss_pred --HHHHHHcCCCceEEEEehHHHHHHHHHHcCC------CcCCEEEcHHHHHHhCC
Confidence 2689999999999999999999999998998 78889999998887765
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.59 E-value=5e-15 Score=132.50 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=94.8
Q ss_pred cEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHh
Q psy12566 82 SIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELI 161 (220)
Q Consensus 82 ~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~ 161 (220)
++.+|+|.++++++++. +....+||||+||.+.. +..+++++||||+.+.+||+|...+.. +. .|+.
T Consensus 2 ~~~~I~t~~~l~~~~~~---l~~~~~va~D~E~~~~~--~~~~~l~liqla~~~~~~lid~~~l~~-------~~-~L~~ 68 (375)
T 1yt3_A 2 NYQMITTDDALASLCEA---VRAFPAIALDTEFVRTR--TYYPQLGLIQLFDGEHLALIDPLGITD-------WS-PLKA 68 (375)
T ss_dssp CCEEECSHHHHHHHHHH---HTTSSEEEEEEEEECCS--CSSCEEEEEEEECSSCEEEECGGGCSC-------CH-HHHH
T ss_pred CeEEeCCHHHHHHHHHH---HcCCCeEEEEeeecCCC--cCCCceEEEEEecCCcEEEEeCCCCCC-------hH-HHHH
Confidence 46789999999999998 88889999999999753 357899999999999999999765521 11 3789
Q ss_pred cccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 162 VFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
+|+|++|+||||++++|+..|.+.+++ .+.+++|++..+..+..
T Consensus 69 ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi------~~~~~fDt~lAa~lL~~ 112 (375)
T 1yt3_A 69 ILRDPSITKFLHAGSEDLEVFLNVFGE------LPQPLIDTQILAAFCGR 112 (375)
T ss_dssp HHHCTTSEEEESSCHHHHHHHHHHHSS------CCSSEEEHHHHHHHTTC
T ss_pred HHcCCCceEEEeeHHHHHHHHHHHcCC------CCCcEEEcHHHHHHcCC
Confidence 999999999999999999999988887 67799999999877654
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.20 E-value=2.5e-11 Score=110.77 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=87.0
Q ss_pred CcEEEEeCHHHHHHHHHHHhccCCC-CeEEEeeeeccCCCCCCCCCceEEEeEeCC-eEEEEEccCCCCCCchhhhhHHH
Q psy12566 81 NSIILVDTADKFASALQDFARLDHN-SHLGLDTEWKPNLSGGSPPTLALLQIATRD-RVYILDIITLSKLPCYAQLCHDL 158 (220)
Q Consensus 81 ~~I~~Vdt~~~l~~~~~~l~~l~~~-~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~-~v~LiD~~~l~~~~~~~~~~~~~ 158 (220)
+...+|+|.++++++++. +..+ .+||||+||.+.+ +..+++++||||+.+ .+|+||...+.... ..+. .
T Consensus 16 ~~~~~I~t~e~L~~~~~~---L~~~~~~vavDtE~~~~~--~~~~~l~liQla~~~~~~~lid~l~~~~~~---~~l~-~ 86 (440)
T 3cym_A 16 GVPNVIDTLPAFRDYCSE---LASSHGSLAADAERASGF--RYGHEDWLVQFKRDGAGIGLLDPQALAAAG---ADWN-D 86 (440)
T ss_dssp CCCCEECSHHHHHHHHHH---HHSCEEEEEEEEEECTTT--SSSCCEEEEEEEEETTEEEEECHHHHHHTT---CCHH-H
T ss_pred CCCEeeCCHHHHHHHHHH---HHhcCCeEEEEeeecCCC--CCCCCEEEEEEEECCCcEEEEEcCCccccc---cCHH-H
Confidence 444789999999999998 7666 8999999998753 357899999999854 59999984421000 0112 4
Q ss_pred HHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 159 ELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 159 l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
|+.+|+|+ .||||++++|+..|. .++. .+.+++|++..++.+..
T Consensus 87 L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi------~~~~~fDt~lAa~lL~~ 130 (440)
T 3cym_A 87 FNRAVGDA--VWILHDSLQDLPGFD-ELGM------EPQRLFDTEIAARLLGL 130 (440)
T ss_dssp HHHHHTTC--EEEESSHHHHHHHHH-HHTC------CCCEEEEHHHHHHHTTC
T ss_pred HHHHHCCC--CEEEEcCHHHHHHHH-HcCC------cCCceehHHHHHHHhCC
Confidence 78999997 699999999999996 7777 67799999877766654
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.61 E-value=4.2e-07 Score=85.82 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=87.6
Q ss_pred CCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEe-CCeEEEEEccC--CC---CCCchhh
Q psy12566 80 PNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIAT-RDRVYILDIIT--LS---KLPCYAQ 153 (220)
Q Consensus 80 ~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat-~~~v~LiD~~~--l~---~~~~~~~ 153 (220)
+.++.+|++.++++++++. +....+|+||+|+.+.. ...++++.||+++ .+..+.+.+.. ++ .++ ..+
T Consensus 4 ~~~y~~I~~~~~l~~~~~~---l~~~~~va~DtEttgl~--~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~-~~~ 77 (605)
T 2kfn_A 4 YDNYVTILDEETLKAWIAK---LEKAPVFAFDTETDSLD--NISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQIS-RER 77 (605)
T ss_dssp SSSSEECCSHHHHHHHHHH---HHTSSSEEEEEEESCSC--TTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCC-HHH
T ss_pred hhheEEecCHHHHHHHHHh---cccCCeEEEEEecCCCC--cccCceEEEEEEEcCCcEEEEeccccccccccccC-HHH
Confidence 3456788999999999998 76778999999998752 2467899999997 66666663322 11 111 012
Q ss_pred hhHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCc-eeeHHHHHHHhhh
Q psy12566 154 LCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTS-YLDLQLLWSKLVA 211 (220)
Q Consensus 154 ~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~-~~DL~~l~~~l~~ 211 (220)
.+ ..|+.+|+|+++.||||+.+.|+..|.+ ++. .+.+ ++|+..+++.+.+
T Consensus 78 vl-~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi------~l~~~~~DT~laayLL~p 128 (605)
T 2kfn_A 78 AL-ELLKPLLEDEKALKVGQNLKYDRGILAN-YGI------ELRGIAFDTMLESYILNS 128 (605)
T ss_dssp HH-HHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC------CCCCEEEEHHHHHHHHCT
T ss_pred HH-HHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC------CCCCccccHHHHHHHhCC
Confidence 22 3478999999999999999999999986 565 4555 8999999888776
No 8
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=97.72 E-value=7.7e-05 Score=71.53 Aligned_cols=89 Identities=15% Similarity=-0.023 Sum_probs=69.8
Q ss_pred eEEEeeeeccCCCCCCCCCceEEEeEe--CCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcc-hhhHHHHH
Q psy12566 107 HLGLDTEWKPNLSGGSPPTLALLQIAT--RDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNL-MPDVSIIK 183 (220)
Q Consensus 107 ~VG~D~Ew~p~~~~~~~~~vaLlQiat--~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~-~~Dl~~L~ 183 (220)
+|+||+|..... ....+++++||+. .+.++++|...+ +..+. .|+.+|+ ++++||||+. +.|+..|.
T Consensus 1 ~vv~D~ETtGl~--~~~d~i~~iqi~~~~~~~~~~~~p~~i------~~~l~-~L~~~l~-~~~~kV~HNa~kfD~~~L~ 70 (698)
T 1x9m_A 1 MIVSDIEANALL--ESVTKFHCGVIYDYSTAEYVSYRPSDF------GAYLD-ALEAEVA-RGGLIVFHNGHKYDVPALT 70 (698)
T ss_dssp CEEEEEEESSCG--GGCCCEEEEEEEETTTTEEEEECGGGH------HHHHH-HHHHHHH-TTCCEEESSTTTTHHHHHH
T ss_pred CEEEEcCCCCcC--CCCCEEEEEEEEecCCCcEEEEChHHH------HHHHH-HHHHHHh-cCCeEEEcCChHHHHHHHH
Confidence 589999997542 2456999999998 558999986543 12333 4788999 9999999998 99999998
Q ss_pred hhC------CCCccccCCc--CceeeHHHHHHHhhh
Q psy12566 184 TSL------PFSECSSYNK--TSYLDLQLLWSKLVA 211 (220)
Q Consensus 184 ~~~------~~~~~~~~~~--~~~~DL~~l~~~l~~ 211 (220)
+.+ +. .+ ..++|+..+++.+.+
T Consensus 71 ~~~~~~~~~Gi------~l~~~~~~DTmlaayLL~p 100 (698)
T 1x9m_A 71 KLAKLQLNREF------HLPRENCIDTLVLSRLIHS 100 (698)
T ss_dssp HHHHHHHCCCC------CCCGGGEEEHHHHHHHHTT
T ss_pred HhhhhcccCCc------cCCCCcchhHHHHHHHhCC
Confidence 774 55 23 469999999998876
No 9
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.63 E-value=0.00015 Score=68.31 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=69.8
Q ss_pred eEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcchhhHHHHHhhC
Q psy12566 107 HLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSL 186 (220)
Q Consensus 107 ~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~ 186 (220)
-..+|+|.... .....+++.||+|+.+.+|.|++...... ..|+.+|+|+++.||||+.+.|+..|.+ +
T Consensus 31 ~~aldtE~~~~--~~~~a~Lvgisla~~~~a~yIp~~~~~~l--------~~Lk~lLed~~i~KV~hn~K~Dl~vL~~-~ 99 (592)
T 3pv8_A 31 KAALVVEVVEE--NYHDAPIVGIAVVNEHGRFFLRPETALAD--------PQFVAWLGDETKKKSMFDSKRAAVALKW-K 99 (592)
T ss_dssp EEEEEEECCSS--SCTTCCCCEEEEEETTEEEEECHHHHTTC--------HHHHHHHTCTTSEEEESSHHHHHHHHHH-T
T ss_pred CcEEEEEEcCC--ccCcccEEEEEEEcCCceEEEccchhhHH--------HHHHHHHhCCCCeEEEechHHHHHHHHH-c
Confidence 46899999764 34678899999999999999986421111 1378999999999999999999999975 5
Q ss_pred CCCccccCCc-CceeeHHHHHHHhhh
Q psy12566 187 PFSECSSYNK-TSYLDLQLLWSKLVA 211 (220)
Q Consensus 187 ~~~~~~~~~~-~~~~DL~~l~~~l~~ 211 (220)
++ .+ ..++|++..+..+.+
T Consensus 100 Gi------~l~g~~fDTmLAAYLL~p 119 (592)
T 3pv8_A 100 GI------ELCGVSFDLLLAAYLLDP 119 (592)
T ss_dssp TC------CCCCEEEEHHHHHHHHCG
T ss_pred CC------CCCCccchHHHHHHHcCC
Confidence 66 44 458999999888776
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.64 E-value=0.00069 Score=63.10 Aligned_cols=82 Identities=12% Similarity=-0.193 Sum_probs=64.2
Q ss_pred CCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcchhhHHHHH
Q psy12566 104 HNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIK 183 (220)
Q Consensus 104 ~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~ 183 (220)
+.+-+++|||+... .....+++.+|+|+.+.+|.+| .. + ..|+.+|+| +.||||+.+.|+.
T Consensus 9 ~p~~valDtE~~~~--~~~~a~Lvgi~la~~~~a~~i~-~~----------l-~~l~~~l~d--~~kV~hn~K~Dl~--- 69 (540)
T 4dfk_A 9 PPEGAFVGFVLSRK--EPMWADLLALAAARGGRVHRAP-EP----------Y-KALRDLKEA--RGLLAKDLSVLAL--- 69 (540)
T ss_dssp CCTTCEEEEEESSS--CTTTCCEEEEEEEETTEEEECS-SH----------H-HHHTTCSSB--CSTTHHHHHHHHH---
T ss_pred CCCceEEEEEecCC--ccCcccEEEEEEEcCCEEEEeh-hh----------H-HHHHHHHcC--CCEEEeccHHHHH---
Confidence 34559999999865 3567899999999999999776 11 1 137889999 8899999999998
Q ss_pred hhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 184 TSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 184 ~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
.++. .+..++|++.++..+.+
T Consensus 70 -~~Gi------~~~~~fDT~laAyLL~p 90 (540)
T 4dfk_A 70 -REGL------GLPPGDDPMLLAYLLDP 90 (540)
T ss_dssp -HTTC------CCCBCCCHHHHHHHHCT
T ss_pred -HcCC------CCCcceeHHHHHHHhCC
Confidence 3455 33378999999888766
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=93.58 E-value=0.11 Score=42.42 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=63.0
Q ss_pred EeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEe-------CCeEEE-------EEccCCCCCC--
Q psy12566 86 VDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIAT-------RDRVYI-------LDIITLSKLP-- 149 (220)
Q Consensus 86 Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat-------~~~v~L-------iD~~~l~~~~-- 149 (220)
|++.+.+..+... +....+|.||+|.... ...+-.++|||. .+++.+ ++...-..++
T Consensus 21 ~~~~~~~~~l~~~---l~~~~~vviD~ETTGl----~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~ 93 (235)
T 3v9w_A 21 MSDNAQLTGLCDR---FRGFYPVVIDVETAGF----NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPE 93 (235)
T ss_dssp --------CHHHH---TTTEEEEEEEEEESSS----CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHH
T ss_pred ccccccccCchhc---ccCCcEEEEEEeCCCC----CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHH
Confidence 5666777777777 8889999999999742 234556888863 233322 3321000111
Q ss_pred -----------------chhhhhHHHHHhccc----C---CCeEEEEEcchhhHHHHHhhCCCCcc-c-cCCcCceeeHH
Q psy12566 150 -----------------CYAQLCHDLELIVFA----N---DDLLKIGFNLMPDVSIIKTSLPFSEC-S-SYNKTSYLDLQ 203 (220)
Q Consensus 150 -----------------~~~~~~~~~l~~ll~----~---~~IlKvG~~~~~Dl~~L~~~~~~~~~-~-~~~~~~~~DL~ 203 (220)
...+.+..+ ...+. + ++.+.|||+.+-|+..|.+.+...+- . +.....++|+.
T Consensus 94 ~~~i~GIt~e~~v~~~~~~~~vl~~~-~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~ 172 (235)
T 3v9w_A 94 ALAFNGIDPNDPDRGAVSGYEALHEI-FKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTA 172 (235)
T ss_dssp HHHHHCCCTTCGGGCCBCHHHHHHHH-HHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHH
T ss_pred HHHHhCCCHHHHHhcCCCHHHHHHHH-HHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhH
Confidence 001123332 23333 2 57788999999999999876532110 0 00124689999
Q ss_pred HHHHHhhh
Q psy12566 204 LLWSKLVA 211 (220)
Q Consensus 204 ~l~~~l~~ 211 (220)
.+++.+.+
T Consensus 173 ~la~~~~p 180 (235)
T 3v9w_A 173 ALAGLALG 180 (235)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99886543
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=87.18 E-value=2.6 Score=32.83 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=54.7
Q ss_pred cCCCCeEEEeeeeccCCCCCCCCCceEEEeEe----CCeEE-----EEEccCCCCCC------------------chhhh
Q psy12566 102 LDHNSHLGLDTEWKPNLSGGSPPTLALLQIAT----RDRVY-----ILDIITLSKLP------------------CYAQL 154 (220)
Q Consensus 102 l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat----~~~v~-----LiD~~~l~~~~------------------~~~~~ 154 (220)
+....+|.||+|.... ....-.++|||. .+++. +|++.. .++ ..++.
T Consensus 9 l~~~~~v~iD~ETTGl----~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v 82 (186)
T 2p1j_A 9 FGDATFVVLDFETTGL----DPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEV 82 (186)
T ss_dssp ----CEEEEEEEESCS----CTTTCCEEEEEEEEEETTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHH
T ss_pred CcCCCEEEEEEECCCC----CCCCCeEEEEEEEEEECCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHH
Confidence 5667899999999742 122345888873 34432 333211 121 01223
Q ss_pred hHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhh
Q psy12566 155 CHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLV 210 (220)
Q Consensus 155 ~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~ 210 (220)
+.. +..++.+ -+-|||+...|+..|.+.+...+ .......++|+..+++.+.
T Consensus 83 ~~~-~~~~l~~--~~lv~hn~~fD~~~L~~~~~~~g-~~~~~~~~iDt~~l~~~~~ 134 (186)
T 2p1j_A 83 LPE-FLGFLED--SIIVAHNANFDYRFLRLWIKKVM-GLDWERPYIDTLALAKSLL 134 (186)
T ss_dssp HHH-HHHHSSS--CEEEETTHHHHHHHHHHHHHHHH-CCCCCCCEEEHHHHHHHHT
T ss_pred HHH-HHHHHCC--CEEEEECcHHHHHHHHHHHHHcC-CCCCCCCEEeHHHHHHHHh
Confidence 333 3455554 35699999999999987654211 1012357899998887653
No 13
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=74.97 E-value=12 Score=29.73 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCeEEEEEcchhhHHHHHhhCCCCccccC---CcCceeeHHHHHHHhh
Q psy12566 166 DDLLKIGFNLMPDVSIIKTSLPFSECSSY---NKTSYLDLQLLWSKLV 210 (220)
Q Consensus 166 ~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~---~~~~~~DL~~l~~~l~ 210 (220)
.+.+-|||+..-|+..|.+.+...+ ... ....++|+..+++.+.
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g-~~~~p~~~~~~iDt~~l~~~~~ 171 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTG-IKRNPFHPFSSFDTATLAGLAY 171 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHT-CCCCCEEEEEEEEHHHHHHHHH
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcC-CCcCCccccceeeHHHHHHHHc
Confidence 3456799999999999987654211 100 1246899998887543
No 14
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=70.91 E-value=21 Score=27.42 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=55.0
Q ss_pred CCCeEEEeeeeccCCCCCC-CCCceEEEeEe----CCeE------EEEEccCCCCCC------------------chhhh
Q psy12566 104 HNSHLGLDTEWKPNLSGGS-PPTLALLQIAT----RDRV------YILDIITLSKLP------------------CYAQL 154 (220)
Q Consensus 104 ~~~~VG~D~Ew~p~~~~~~-~~~vaLlQiat----~~~v------~LiD~~~l~~~~------------------~~~~~ 154 (220)
...+|.||+|+......+. ...-.+|||+. .+.+ .++++.. .++ ..++.
T Consensus 8 ~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v 85 (194)
T 2gui_A 8 ITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAEV 85 (194)
T ss_dssp CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHHH
T ss_pred cCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHHH
Confidence 3568999999964210000 12467899973 2222 2343321 222 01223
Q ss_pred hHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccc-cC-C-cCceeeHHHHHHHhh
Q psy12566 155 CHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECS-SY-N-KTSYLDLQLLWSKLV 210 (220)
Q Consensus 155 ~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~-~~-~-~~~~~DL~~l~~~l~ 210 (220)
+.. +..++.+ .+ -|||+...|+..|.+.+...+.- +. . ...++|+..+++.+.
T Consensus 86 ~~~-~~~~l~~-~~-lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~ 141 (194)
T 2gui_A 86 ADE-FMDYIRG-AE-LVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMF 141 (194)
T ss_dssp HHH-HHHHHTT-SE-EEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHS
T ss_pred HHH-HHHHHCC-Ce-EEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHc
Confidence 333 3345554 33 48999999999998764321100 00 1 157999988877654
No 15
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=63.00 E-value=11 Score=36.74 Aligned_cols=76 Identities=14% Similarity=-0.133 Sum_probs=51.8
Q ss_pred eEEEeeeeccCCCCCCCCCceEEEeEe-CCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcchhhHHHHHhh
Q psy12566 107 HLGLDTEWKPNLSGGSPPTLALLQIAT-RDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTS 185 (220)
Q Consensus 107 ~VG~D~Ew~p~~~~~~~~~vaLlQiat-~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~ 185 (220)
.+++|+|... . ...++| +++|. .+..+.+.+ . . ..|+.+|+|+++ +.+.|+..|.+
T Consensus 306 ~va~d~et~~-~---~~~~l~-vg~a~~~g~a~yvp~-~--------~---~~Lk~lLed~~i-----n~K~d~~~L~~- 362 (832)
T 1bgx_T 306 FVGFVLSRKE-P---MWADLL-ALAAARGGRVHRAPE-P--------Y---KALRDLKEARGL-----LAKDLSVLALR- 362 (832)
T ss_dssp CBEEECSSSC-T---TTCCCC-EEECBSSSEEECCSC-H--------H---HHHHHCSSBCBT-----THHHHHHHHHH-
T ss_pred eEEEEEecCC-c---ccCcee-EEEEEcCCCEEEEEC-C--------H---HHHHHHHhCCCC-----ChHHHHHHHHH-
Confidence 3778877543 1 123333 66776 455555433 1 1 247999999997 99999999975
Q ss_pred CCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 186 LPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 186 ~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
+++ .+..++|+...+..+.+
T Consensus 363 ~Gi------~~~~~~Dt~laayLl~p 382 (832)
T 1bgx_T 363 EGL------GLPPGDDPMLLAYLLDP 382 (832)
T ss_dssp HTC------CCCBCCCHHHHHHHHCT
T ss_pred cCC------ccCcccCHHHHHHHcCC
Confidence 676 44577999999988877
No 16
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=60.03 E-value=24 Score=27.15 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=47.8
Q ss_pred CCCeEEEeeeeccCCCCCCCCCceEEEeEe---CCeEEEEEccCCC--CCC------------------chhhhhHHHHH
Q psy12566 104 HNSHLGLDTEWKPNLSGGSPPTLALLQIAT---RDRVYILDIITLS--KLP------------------CYAQLCHDLEL 160 (220)
Q Consensus 104 ~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat---~~~v~LiD~~~l~--~~~------------------~~~~~~~~~l~ 160 (220)
...+|.||+|..... ....-.++||+. .+.+. ++.+.-. .++ ..++.+.. +.
T Consensus 4 ~~~~vviD~ETTGl~---~~~~~~iiei~~v~~~g~~i-~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~-~~ 78 (189)
T 1wlj_A 4 SREVVAMDCEMVGLG---PHRESGLARCSLVNVHGAVL-YDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLE-IL 78 (189)
T ss_dssp --CEEEEEEEEEEET---TTTEEEEEEEEEECTTCCEE-EEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHH-HH
T ss_pred CCeEEEEEeECcCcC---CCCCceEEEEEEEeCCCCEE-EeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHH-HH
Confidence 457999999997531 111234668874 34443 3432110 111 01223333 34
Q ss_pred hcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHH
Q psy12566 161 IVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLL 205 (220)
Q Consensus 161 ~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l 205 (220)
.++.+ .+-|||+...|+..|.+.++. ..++|+..+
T Consensus 79 ~~l~~--~~lV~hn~~fD~~~L~~~~~~--------~~~idt~~~ 113 (189)
T 1wlj_A 79 QLLKG--KLVVGHDLKHDFQALKEDMSG--------YTIYDTSTD 113 (189)
T ss_dssp HHHTT--SEEEESSHHHHHHHTTCCCTT--------CEEEEGGGC
T ss_pred HHHCC--CEEEECCcHHHHHHHHHhCCC--------CceechHhh
Confidence 45543 456999999999999876553 247777654
No 17
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=59.47 E-value=7.4 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=29.6
Q ss_pred hhcCChHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCC
Q psy12566 5 IVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPN 41 (220)
Q Consensus 5 ~v~~d~~Lq~~lv~~l~~~~d~~~A~~wa~~~~l~~~ 41 (220)
.+..|+.|+ ++=+-|+..+-..+.-+|+.|.++-.+
T Consensus 22 lL~eN~~L~-qLyk~LV~s~vIse~eFW~~r~~ll~~ 57 (61)
T 2dii_A 22 MLQEDPVLF-QLYKDLVVSQVISAEEFWANRLNVNSG 57 (61)
T ss_dssp HHHHCHHHH-HHHHHHHTTTSSCHHHHHHHHCSSCCC
T ss_pred HHHhCHHHH-HHHHHHHHhCcCCHHHHHHHHHHhhcC
Confidence 567899999 777777877889999999999986543
No 18
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=58.63 E-value=31 Score=26.59 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=27.7
Q ss_pred eEEEEEcchhhHH-HHHhhCCCCc-cccCCcCceeeHHHHHHHhh
Q psy12566 168 LLKIGFNLMPDVS-IIKTSLPFSE-CSSYNKTSYLDLQLLWSKLV 210 (220)
Q Consensus 168 IlKvG~~~~~Dl~-~L~~~~~~~~-~~~~~~~~~~DL~~l~~~l~ 210 (220)
.+-|||+..-|+. .|.+.+...+ ..+.....++|+..+++.+.
T Consensus 106 ~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~ 150 (204)
T 1w0h_A 106 KYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFY 150 (204)
T ss_dssp CEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHH
T ss_pred cEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHh
Confidence 4569999999996 8876543211 01011237999999987653
No 19
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=51.95 E-value=79 Score=28.55 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=58.0
Q ss_pred cCCCCeEEEeeeeccCCCCCCCCCceEEEeEe---C--Ce------EEEEEccCCCCC---C------c-----------
Q psy12566 102 LDHNSHLGLDTEWKPNLSGGSPPTLALLQIAT---R--DR------VYILDIITLSKL---P------C----------- 150 (220)
Q Consensus 102 l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat---~--~~------v~LiD~~~l~~~---~------~----------- 150 (220)
.....+|.||+|+... ...+-.+||||. . +. ..++++.. .. | +
T Consensus 6 ~~~~~~vv~DlETTGl----~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~ap~ 79 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGT----HPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARAKGE 79 (482)
T ss_dssp -CCCEEEEEEEEESSS----CTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHHHCB
T ss_pred CCCCCEEEEEEECCCC----CCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhcCCC
Confidence 4567899999999742 223357899973 2 22 22333321 11 1 0
Q ss_pred h-hhhhHHHHHhcccCCCeEEEEEc-chhhHHHHHhhCCCCc--cccCC---cCceeeHHHHHHHhhh
Q psy12566 151 Y-AQLCHDLELIVFANDDLLKIGFN-LMPDVSIIKTSLPFSE--CSSYN---KTSYLDLQLLWSKLVA 211 (220)
Q Consensus 151 ~-~~~~~~~l~~ll~~~~IlKvG~~-~~~Dl~~L~~~~~~~~--~~~~~---~~~~~DL~~l~~~l~~ 211 (220)
. .+.+.. +..++..++.+-|||+ +.-|...|.+.+.-.. .+... ....+|+..+++.+..
T Consensus 80 ~~~evl~~-f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~ 146 (482)
T 2qxf_A 80 NEAAFAAR-IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYA 146 (482)
T ss_dssp CHHHHHHH-HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHH
Confidence 0 111222 3445664566779998 8999999887644211 11001 1568899998887653
No 20
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=31.92 E-value=2.1e+02 Score=23.49 Aligned_cols=105 Identities=7% Similarity=0.016 Sum_probs=55.8
Q ss_pred CCCeEEEeeeeccCCCCCCCCCceEEEeEe---C---CeE-----EEEEccCCCCCC------------------chhhh
Q psy12566 104 HNSHLGLDTEWKPNLSGGSPPTLALLQIAT---R---DRV-----YILDIITLSKLP------------------CYAQL 154 (220)
Q Consensus 104 ~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat---~---~~v-----~LiD~~~l~~~~------------------~~~~~ 154 (220)
...+|.||+|+...-......+-.+|||+. . .++ .+|+......++ ..++.
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 467899999997531000123457899873 1 132 233332211222 01122
Q ss_pred hHHHHHhcccCC-----CeEEEEEcchhhHH-HHHhhCCCCc-cccCCcCceeeHHHHHHHh
Q psy12566 155 CHDLELIVFAND-----DLLKIGFNLMPDVS-IIKTSLPFSE-CSSYNKTSYLDLQLLWSKL 209 (220)
Q Consensus 155 ~~~~l~~ll~~~-----~IlKvG~~~~~Dl~-~L~~~~~~~~-~~~~~~~~~~DL~~l~~~l 209 (220)
+..| ..++.+. ..+-|||+..-|+. .|.+.+...+ ..+.....++|++.+++.+
T Consensus 157 l~~f-~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~ 217 (299)
T 1zbh_A 157 LKKV-IDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNF 217 (299)
T ss_dssp HHHH-HHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHH
T ss_pred HHHH-HHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHH
Confidence 3332 3344442 24569999999999 8876543211 0101224799999888765
No 21
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.37 E-value=27 Score=23.54 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHcCCCCCCCch-hhHHHHhhhhh
Q psy12566 8 DNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGF-DLRDKIAEEES 56 (220)
Q Consensus 8 ~d~~Lq~~lv~~l~~~~d~~~A~~wa~~~~l~~~~lP~-~v~~~~~~~~~ 56 (220)
+.++.+..++++|...|. ..|...|..++|. +. .|+..+...+.
T Consensus 8 ~~~~~~~~IL~~Lk~~g~-~ta~eiA~~Lgit----~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 8 DMAEIKEKICDYLFNVSD-SSALNLAKNIGLT----KARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEHHHHHHHHCGG----GHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHcCC-cCHHHHHHHcCCC----cHHHHHHHHHHHHH
Confidence 456889999999999775 5599999999999 77 78877766533
No 22
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.17 E-value=34 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcCCCCCCCchhhHHHHhhh
Q psy12566 14 KELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEE 54 (220)
Q Consensus 14 ~~lv~~l~~~~d~~~A~~wa~~~~l~~~~lP~~v~~~~~~~ 54 (220)
.++++|+.+.|..-.-..++.+||++ +..|...+.+.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~----kdeV~~~LrrL 49 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVE----KQEVVKLLEAL 49 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCC----HHHHHHHHHHH
Confidence 57899999999988889999999999 55666666665
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=29.88 E-value=42 Score=28.38 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhccCCCCeEEEeeeeccCCCCC-----------------CCCCceEEEeEe----C-C-------eEEEE
Q psy12566 90 DKFASALQDFARLDHNSHLGLDTEWKPNLSGG-----------------SPPTLALLQIAT----R-D-------RVYIL 140 (220)
Q Consensus 90 ~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~-----------------~~~~vaLlQiat----~-~-------~v~Li 140 (220)
+++..+.+. +.+.++|++|+|+.....+. .-....+|||.. . + .++=|
T Consensus 26 ~e~~~I~~~---i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqF 102 (289)
T 1uoc_A 26 SEFAVIRQL---VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQF 102 (289)
T ss_dssp HHHHHHHHH---TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEE
T ss_pred HHHHHHHHH---HhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEE
Confidence 455555555 89999999999996543210 125688999963 1 1 24444
Q ss_pred EccCCC--CC--C--------------------c-hhhhhHHHHH--hcccCCCeEEEEEcchhhHHHHHhhCCC--Ccc
Q psy12566 141 DIITLS--KL--P--------------------C-YAQLCHDLEL--IVFANDDLLKIGFNLMPDVSIIKTSLPF--SEC 191 (220)
Q Consensus 141 D~~~l~--~~--~--------------------~-~~~~~~~~l~--~ll~~~~IlKvG~~~~~Dl~~L~~~~~~--~~~ 191 (220)
... .+ .. . + ....+.+++. .|..+++|..|-|...-|+-.|.+.+-. +..
T Consensus 103 NF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~ 181 (289)
T 1uoc_A 103 NFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPN 181 (289)
T ss_dssp EBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCS
T ss_pred EEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCc
Confidence 443 21 11 0 0 0111222221 2455688999999999998877765432 211
Q ss_pred ----c----cCCcCceeeHHHHHHHhhh
Q psy12566 192 ----S----SYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 192 ----~----~~~~~~~~DL~~l~~~l~~ 211 (220)
| ..-..++.|+..+++....
T Consensus 182 ~~~~F~~~l~~~FP~iyD~K~l~~~~~~ 209 (289)
T 1uoc_A 182 NKEDFEWWVHQYMPNFYDLNLVYKIIQE 209 (289)
T ss_dssp SHHHHHHHHHHHCSSEEEHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCccceeHHHHHHHHHh
Confidence 1 0012379999999887665
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=25.90 E-value=51 Score=28.44 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=31.3
Q ss_pred cccCCCeEEEEEcchhhHHHHHhhCC--CCc----cc----cCCcCceeeHHHHHHHhh
Q psy12566 162 VFANDDLLKIGFNLMPDVSIIKTSLP--FSE----CS----SYNKTSYLDLQLLWSKLV 210 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~Dl~~L~~~~~--~~~----~~----~~~~~~~~DL~~l~~~l~ 210 (220)
+.-+++|..|-|...-|+-.|.+.+- .+. .| ..-..++.|+..+++...
T Consensus 156 Lvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~ 214 (333)
T 2p51_A 156 LVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVL 214 (333)
T ss_dssp SSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTT
T ss_pred cccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhc
Confidence 55667899999988889877765432 111 11 001237889988887754
No 25
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=24.67 E-value=34 Score=28.81 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=31.1
Q ss_pred cccCCCeEEEEEcchhhHHHHHhhCCC--Cc----cc----cCCcCceeeHHHHHHHhhh
Q psy12566 162 VFANDDLLKIGFNLMPDVSIIKTSLPF--SE----CS----SYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~Dl~~L~~~~~~--~~----~~----~~~~~~~~DL~~l~~~l~~ 211 (220)
+.-++++..|.|...-|+-.|.+.+-. +. .| ..-...+.|+..+++....
T Consensus 145 lvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~ 204 (285)
T 4gmj_B 145 VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN 204 (285)
T ss_dssp SSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTT
T ss_pred HHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccc
Confidence 345688999988888899877765431 11 11 0011368898888766543
No 26
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=23.60 E-value=37 Score=28.05 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=31.2
Q ss_pred cccCCCeEEEEEcchhhHHHHHhhCCC--Cc----cc----cCCcCceeeHHHHHHHhh
Q psy12566 162 VFANDDLLKIGFNLMPDVSIIKTSLPF--SE----CS----SYNKTSYLDLQLLWSKLV 210 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~Dl~~L~~~~~~--~~----~~----~~~~~~~~DL~~l~~~l~ 210 (220)
|..+++|..|-|...-|+..|.+.+-. +. .| ..-..++.|+..+++...
T Consensus 135 lvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~ 193 (252)
T 2d5r_A 135 VVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCK 193 (252)
T ss_dssp SSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCT
T ss_pred cccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhc
Confidence 455688999999999998877765331 11 11 001127888888877654
No 27
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=22.52 E-value=1.1e+02 Score=16.96 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHH
Q psy12566 10 PELQKELIDLCVQYYDCKEAYY 31 (220)
Q Consensus 10 ~~Lq~~lv~~l~~~~d~~~A~~ 31 (220)
..||++++.-|..+|--.+++-
T Consensus 6 s~LQ~eLL~aLL~SGlsKe~Li 27 (32)
T 1g2y_A 6 SQLQTEMLAALLESGLSKEALI 27 (32)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHH
Confidence 5799999999999887666553
No 28
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=20.73 E-value=50 Score=22.88 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=24.7
Q ss_pred hhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhhccCccCCCC
Q psy12566 176 MPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK 220 (220)
Q Consensus 176 ~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~~~~~~~p~~ 220 (220)
.+++++..+++-. .-++-+-++.+-+..+.-.|-.+||+
T Consensus 11 ~e~V~k~iRslL~------S~k~gvtl~~L~~DYr~l~G~~iP~r 49 (89)
T 3rco_A 11 GDLVSKMLRAVLQ------SHKNGVALPRLQGEYRSLTGDWIPFK 49 (89)
T ss_dssp HHHHHHHHHHHHH------TCTTCEEHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHHHhh------cCCCCCCHHHHHHHHHHHhCCcCChh
Confidence 3445554444443 33455777888777777778888874
Done!