Query psy12566
Match_columns 220
No_of_seqs 205 out of 1063
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 22:39:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12566.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12566hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hbka2 c.55.3.5 (A:129-420) E 99.8 4E-21 2.9E-25 164.8 12.2 117 77-211 79-195 (292)
2 d1yt3a3 c.55.3.5 (A:1-193) Rib 99.8 1.2E-20 8.9E-25 152.7 11.2 111 82-211 2-112 (193)
3 d1vk0a_ c.55.3.5 (A:) Hypothet 99.8 1.8E-20 1.3E-24 153.4 9.3 117 82-211 20-146 (206)
4 d1kfsa1 c.55.3.5 (A:324-518) E 99.2 3.3E-11 2.4E-15 94.8 11.9 122 79-211 3-128 (195)
5 d2hhva1 c.55.3.5 (A:298-468) E 98.4 4.3E-07 3.2E-11 70.5 8.6 89 106-211 17-106 (171)
6 d1wlja_ c.55.3.5 (A:) Interfer 74.4 1.7 0.00012 31.0 4.4 43 159-207 72-114 (173)
7 d3b6oa1 c.55.3.5 (A:9-234) Thr 52.3 23 0.0017 25.8 7.4 46 166-211 109-156 (226)
8 d1s5ja1 c.55.3.5 (A:40-449) Ex 51.3 30 0.0022 28.1 8.6 83 103-187 184-288 (410)
9 d1x9ma1 c.55.3.5 (A:1-210) Exo 37.9 30 0.0022 24.5 5.8 91 107-209 1-98 (204)
10 d1uoca_ c.55.3.9 (A:) Pop2 RNa 31.9 17 0.0012 28.6 3.6 121 90-213 23-208 (286)
11 d1o51a_ d.58.5.4 (A:) Hypothet 28.4 34 0.0024 22.4 4.2 31 70-100 54-85 (102)
12 d1su3a1 a.20.1.2 (A:32-98) Fib 25.9 31 0.0023 20.9 3.3 36 175-216 29-64 (67)
13 d1tgoa1 c.55.3.5 (A:1-347) Exo 25.0 1.4E+02 0.01 22.9 10.4 79 104-184 134-221 (347)
14 d2d5ra1 c.55.3.9 (A:11-262) CC 24.6 26 0.0019 26.9 3.3 51 161-211 134-194 (252)
15 d1gq6a_ c.42.1.1 (A:) Proclava 21.7 18 0.0013 28.2 1.9 29 88-119 248-277 (301)
16 d1slma1 a.20.1.2 (A:16-80) Str 20.8 39 0.0028 20.3 3.0 36 175-216 28-63 (65)
No 1
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.84 E-value=4e-21 Score=164.81 Aligned_cols=117 Identities=22% Similarity=0.295 Sum_probs=103.9
Q ss_pred ccCCCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhH
Q psy12566 77 TLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCH 156 (220)
Q Consensus 77 ~l~~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~ 156 (220)
|++..+.+||+|.++++++++. |+.++.||||+||... .+..+++|||||||++.+||||+.+++... .
T Consensus 79 ~~~~t~~~~Vdt~e~L~~li~~---L~~~~~iavDtE~~~~--~s~~g~l~LiQiat~~~~~iiD~~~l~~~l---~--- 147 (292)
T d2hbka2 79 SWDDSVPIWVDTSTELESMLED---LKNTKEIAVDLEHHDY--RSYYGIVCLMQISTRERDYLVDTLKLRENL---H--- 147 (292)
T ss_dssp CGGGCCCEEECSHHHHHHHHHH---HTTCSEEEEEEEEECS--SSSSCEEEEEEEECSSCEEEEETTTTTTTG---G---
T ss_pred CCCCCCcEEeCCHHHHHHHHHH---HhcCCcEEEEEEeCcC--cccCCeEEEEEEEeCCccEEEEecccccch---H---
Confidence 4556778999999999999999 9999999999999875 357899999999999999999999885221 1
Q ss_pred HHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 157 DLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 157 ~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
.|+.+|+|++|+|||||++.|+..|++.++. .+.|++|++.+++.+..
T Consensus 148 -~L~~ll~d~~I~KV~H~~~~Di~~L~~~~g~------~~~n~fDT~~aa~~l~~ 195 (292)
T d2hbka2 148 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL------YVVGLFDTYHASKAIGL 195 (292)
T ss_dssp -GGHHHHTCTTSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHTC
T ss_pred -HHHHHHhccCeEEEeechHhhhhhhhhcccc------cccchHHHHHHHHHhCc
Confidence 3789999999999999999999999999998 89999999999888753
No 2
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=1.2e-20 Score=152.71 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=99.7
Q ss_pred cEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHh
Q psy12566 82 SIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELI 161 (220)
Q Consensus 82 ~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~ 161 (220)
++.+|+|.++++++++. +...++||||+||.+.. +..+++||||||+++++|+||+...+..+ .++.
T Consensus 2 ~y~~I~t~~~l~~~~~~---l~~~~~i~~DtE~~~~~--~~~~~l~liQi~~~~~~~~id~~~~~~~~--------~l~~ 68 (193)
T d1yt3a3 2 NYQMITTDDALASLCEA---VRAFPAIALDTEFVRTR--TYYPQLGLIQLFDGEHLALIDPLGITDWS--------PLKA 68 (193)
T ss_dssp CCEEECSHHHHHHHHHH---HTTSSEEEEEEEEECCS--CSSCEEEEEEEECSSCEEEECGGGCSCCH--------HHHH
T ss_pred eEEEECCHHHHHHHHHH---HhcCCeEEEECcccCCC--cCCCcEEEEEEecCCcceeehhcchhhhH--------HHHH
Confidence 57899999999999999 99999999999998763 57889999999999999999998875332 3689
Q ss_pred cccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 162 VFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
+|+|++|+||||+++.|+..|.+.++. .+.+++|++.+++.+..
T Consensus 69 ll~~~~i~Kv~hn~~~D~~~L~~~~g~------~~~~~~Dt~~~~~~l~~ 112 (193)
T d1yt3a3 69 ILRDPSITKFLHAGSEDLEVFLNVFGE------LPQPLIDTQILAAFCGR 112 (193)
T ss_dssp HHHCTTSEEEESSCHHHHHHHHHHHSS------CCSSEEEHHHHHHHTTC
T ss_pred HhcCCCceEEEecchhhhhhhhhhcCc------cccccchhhHHHhhhcc
Confidence 999999999999999999999999988 89999999999887664
No 3
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.81 E-value=1.8e-20 Score=153.39 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=94.3
Q ss_pred cEEEEeCHHHHHHHHHHHh---ccCCCCeEEEeeeeccCCCCCC------CCCceEEEeEeCCeEEEEEccCCC-CCCch
Q psy12566 82 SIILVDTADKFASALQDFA---RLDHNSHLGLDTEWKPNLSGGS------PPTLALLQIATRDRVYILDIITLS-KLPCY 151 (220)
Q Consensus 82 ~I~~Vdt~~~l~~~~~~l~---~l~~~~~VG~D~Ew~p~~~~~~------~~~vaLlQiat~~~v~LiD~~~l~-~~~~~ 151 (220)
+++.|.+.+++..++..+. .+...++||||+||+|.|..+. ..++|+|||||++.|||||+.... ..+
T Consensus 20 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~~~~~l~~l~~~~~~~~-- 97 (206)
T d1vk0a_ 20 KTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNL-- 97 (206)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGG--
T ss_pred eeEecCCHHHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeCCCEEEEECCccccccH--
Confidence 5667778777777777755 3456789999999999875322 346999999999999999998753 222
Q ss_pred hhhhHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 152 AQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 152 ~~~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
. .|.++|+|++|+||||++++|++.|++.|+. .++|++|++.++..+..
T Consensus 98 -~----~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi------~~~~~~Dl~~la~~~~~ 146 (206)
T d1vk0a_ 98 -K----DLYRFFASKFVTFVGVQIEEDLDLLRENHGL------VIRNAINVGKLAAEARG 146 (206)
T ss_dssp -H----HHHHHHTCSSSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHHT
T ss_pred -H----HHHHHhcCCCceEEEEeEHHHHHHHHHhcCC------cccceEEchHHHHHhhc
Confidence 2 3789999999999999999999999999998 89999999999887643
No 4
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=99.24 E-value=3.3e-11 Score=94.76 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=94.0
Q ss_pred CCCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCC--c--hhhh
Q psy12566 79 PPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLP--C--YAQL 154 (220)
Q Consensus 79 ~~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~--~--~~~~ 154 (220)
..+++.+|+|+++++++++. +.+.+.+|||+|.... ....++++.+|+++.+..+.+......... . -...
T Consensus 3 ~~~~y~~I~t~~~l~~~l~~---l~~~~~~a~DtEt~~l--~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (195)
T d1kfsa1 3 SYDNYVTILDEETLKAWIAK---LEKAPVFAFDTETDSL--DNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRER 77 (195)
T ss_dssp CTTTSEECCSHHHHHHHHHH---HHHSSSEEEEEEESCS--CTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHH
T ss_pred ccccceEECCHHHHHHHHHH---HhcCCeEEEEeeeCCC--CccccccccceeeccCCcccccccccccccccccccHHH
Confidence 45689999999999999999 8889999999999764 347899999999998776666654431110 0 0122
Q ss_pred hHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566 155 CHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 155 ~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~ 211 (220)
+-..++.+|+++++.|+||+.+.|+..|.+.... ....++|++..+..+.+
T Consensus 78 ~l~~l~~~le~~~i~ki~hn~~~d~~~l~~~~~~------~~~~~~Dt~~a~~l~~~ 128 (195)
T d1kfsa1 78 ALELLKPLLEDEKALKVGQNLKYDRGILANYGIE------LRGIAFDTMLESYILNS 128 (195)
T ss_dssp HHHHHHHHHTCTTSCEEESSHHHHHHHHHTTTCC------CCCEEEEHHHHHHHHCT
T ss_pred HHHHHHHHHhcccceeeechHHHHHHHHHHHhcc------ccCccHHHHHHHHHhcc
Confidence 3345899999999999999999999999865443 56678888888776654
No 5
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=98.41 E-value=4.3e-07 Score=70.50 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=71.2
Q ss_pred CeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcchhhHHHHHhh
Q psy12566 106 SHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTS 185 (220)
Q Consensus 106 ~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~ 185 (220)
.-++||+|.... ...+.++.-++||+++.+|.++....... . .|+.+|+|+++.||||+++.|+..|++
T Consensus 17 ~~~a~~~E~~~~--n~~~~~iiGi~i~~~~~~~~i~~~~~~~~----~----~l~~~l~~~~~~ki~hn~K~d~~~L~~- 85 (171)
T d2hhva1 17 DKAALVVEVVEE--NYHDAPIVGIAVVNEHGRFFLRPETALAD----P----QFVAWLGDETKKKSMFDSKRAAVALKW- 85 (171)
T ss_dssp SEEEEEEECCSS--SCTTCCCCEEEEEETTEEEEECHHHHTTC----H----HHHHHHHCTTSEEEESSHHHHHHHHHT-
T ss_pred CCeEEEEEcCCC--ccccCeEEEEEEEECCCEEEEechhhhhH----H----HHHHHHhCccceeeccchHHHHHHHHH-
Confidence 467999999753 23578899999999999999987543222 1 378899999999999999999999976
Q ss_pred CCCCccccCCcCc-eeeHHHHHHHhhh
Q psy12566 186 LPFSECSSYNKTS-YLDLQLLWSKLVA 211 (220)
Q Consensus 186 ~~~~~~~~~~~~~-~~DL~~l~~~l~~ 211 (220)
+++ .+.+ ++|++..+.-+.+
T Consensus 86 ~gi------~~~~~~fDt~laayll~p 106 (171)
T d2hhva1 86 KGI------ELCGVSFDLLLAAYLLDP 106 (171)
T ss_dssp TTC------CCCCEEEEHHHHHHHHCG
T ss_pred CCC------CCccccccHHHHHHHhcC
Confidence 687 5555 5899999888755
No 6
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.41 E-value=1.7 Score=30.98 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHH
Q psy12566 159 ELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWS 207 (220)
Q Consensus 159 l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~ 207 (220)
+..++++. + -|||++..|++.|.+.++... .....+|...+++
T Consensus 72 ~~~~~~~~-~-lv~hn~~fD~~~L~~~~~~~~----~~~~~~~~~~~~~ 114 (173)
T d1wlja_ 72 ILQLLKGK-L-VVGHDLKHDFQALKEDMSGYT----IYDTSTDRLLWRE 114 (173)
T ss_dssp HHHHHTTS-E-EEESSHHHHHHHTTCCCTTCE----EEEGGGCHHHHHH
T ss_pred HHhhcccc-e-EEeechHhHHHHHHHhhccCc----ccchhHHHHHHHH
Confidence 34555544 3 499999999999987766421 1223455555544
No 7
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=52.25 E-value=23 Score=25.83 Aligned_cols=46 Identities=17% Similarity=0.062 Sum_probs=30.5
Q ss_pred CCeEEEEEcc-hhhHHHHHhhCCCCc-cccCCcCceeeHHHHHHHhhh
Q psy12566 166 DDLLKIGFNL-MPDVSIIKTSLPFSE-CSSYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 166 ~~IlKvG~~~-~~Dl~~L~~~~~~~~-~~~~~~~~~~DL~~l~~~l~~ 211 (220)
...+-|||+. +-|...|++.+.-.+ ........++|+..+++.+..
T Consensus 109 ~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~~~~~~ 156 (226)
T d3b6oa1 109 QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQ 156 (226)
T ss_dssp SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHT
T ss_pred CCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHhcc
Confidence 5566799985 799999987644321 111123347999999887764
No 8
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=51.33 E-value=30 Score=28.14 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=50.1
Q ss_pred CCCCeEEEeeeeccC----CCCCCCCCceEEEeEeC-----CeEEEEEccCCCC-C-----------CchhhhhHHHHHh
Q psy12566 103 DHNSHLGLDTEWKPN----LSGGSPPTLALLQIATR-----DRVYILDIITLSK-L-----------PCYAQLCHDLELI 161 (220)
Q Consensus 103 ~~~~~VG~D~Ew~p~----~~~~~~~~vaLlQiat~-----~~v~LiD~~~l~~-~-----------~~~~~~~~~~l~~ 161 (220)
.+-++++||.|-... |........-++|||.. ..++++....... . +.-.+++..|+.
T Consensus 184 p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~sE~eLL~~F~~- 262 (410)
T d1s5ja1 184 PKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFD- 262 (410)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHH-
T ss_pred CCceEEEEEEEECCCCCCCCCCccccCceEEEEEEEcccCCEEEEEEccCCCccccccCCCeEEEEECCHHHHHHHHHh-
Confidence 456899999998532 22223445578888752 2355544322210 0 101345566654
Q ss_pred cccCCCeEEEEEcchh-hHHHHHhhCC
Q psy12566 162 VFANDDLLKIGFNLMP-DVSIIKTSLP 187 (220)
Q Consensus 162 ll~~~~IlKvG~~~~~-Dl~~L~~~~~ 187 (220)
++.+|+|+ +||++.+ |+..|.....
T Consensus 263 ~i~dpDii-~GyN~~~FD~pyL~~Ra~ 288 (410)
T d1s5ja1 263 ILLEYPIV-LTFNGDDFDLPYIYFRAL 288 (410)
T ss_dssp HHTTCSEE-EESSTTTTHHHHHHHHHH
T ss_pred hhcccceE-EEecccCCcHHHHHHHHH
Confidence 55799986 8999887 9999886543
No 9
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=37.89 E-value=30 Score=24.49 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=50.5
Q ss_pred eEEEeeeeccCCCCCCCCCceEEEeEe----CCeEEEEEccCCCCCCchhhhhHHHHHhcccCCCeEEEEEcc-hhhHHH
Q psy12566 107 HLGLDTEWKPNLSGGSPPTLALLQIAT----RDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNL-MPDVSI 181 (220)
Q Consensus 107 ~VG~D~Ew~p~~~~~~~~~vaLlQiat----~~~v~LiD~~~l~~~~~~~~~~~~~l~~ll~~~~IlKvG~~~-~~Dl~~ 181 (220)
++.||.|...-. ....++ .-|+. .++++.++.... ...... +..++.+++++ |||+. .-|+..
T Consensus 1 il~~DIET~gl~--~~~~~I--~ci~~~d~~~~~~~~~~~~~~------~~~l~~-~~~~l~~~D~i-vghN~~~FD~P~ 68 (204)
T d1x9ma1 1 MIVSDIEANALL--ESVTKF--HCGVIYDYSTAEYVSYRPSDF------GAYLDA-LEAEVARGGLI-VFHNGHKYDVPA 68 (204)
T ss_dssp CEEEEEEESSCG--GGCCCE--EEEEEEETTTTEEEEECGGGH------HHHHHH-HHHHHHTTCCE-EESSTTTTHHHH
T ss_pred CEEEEecCCCCC--CCCCEE--EEEEEEECCCCeEEEEeCCCc------hhHHHH-HHHHHhcCCEE-EEEccccccHHH
Confidence 578999985321 112344 23332 356776654321 122232 45667899986 99985 479999
Q ss_pred HHhhCCCC--ccccCCcCceeeHHHHHHHh
Q psy12566 182 IKTSLPFS--ECSSYNKTSYLDLQLLWSKL 209 (220)
Q Consensus 182 L~~~~~~~--~~~~~~~~~~~DL~~l~~~l 209 (220)
|.+.++.. ..........+|.....+..
T Consensus 69 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (204)
T d1x9ma1 69 LTKLAKLQLNREFHLPRENCIDTLVLSRLI 98 (204)
T ss_dssp HHHHHHHHHCCCCCCCGGGEEEHHHHHHHH
T ss_pred HHHHHHHhccCCcCcCcchhhhhhhhhhhc
Confidence 98655431 11112345567776665544
No 10
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.93 E-value=17 Score=28.59 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhccCCCCeEEEeeeeccCCCCC-----------------CCCCceEEEeEe----C--------CeEEEE
Q psy12566 90 DKFASALQDFARLDHNSHLGLDTEWKPNLSGG-----------------SPPTLALLQIAT----R--------DRVYIL 140 (220)
Q Consensus 90 ~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~-----------------~~~~vaLlQiat----~--------~~v~Li 140 (220)
+++..+.+. +.+.+.|++|+|+.....+. .-....+||+.. . -.+|-|
T Consensus 23 ~e~~~i~~~---i~~~~fvaiD~EF~Gi~~~~~~~~~~t~d~~Y~~lr~nvd~~~iiQlGlt~f~~~g~~~~~~~~~w~F 99 (286)
T d1uoca_ 23 SEFAVIRQL---VSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQF 99 (286)
T ss_dssp HHHHHHHHH---TTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEE
T ss_pred HHHHHHHHH---HhcCCEEEEeeeecCcccCCCCCCCCCHHHHHHHHHHhHhhcceeEEeeeeecccCCCCCCCceEEEE
Confidence 444444455 89999999999997643211 125678999863 1 136666
Q ss_pred Ecc-CCC-C-CC--------------------c-hhhhhHHHH--HhcccCCCeEEEEEcchhhHHHHHhhCCC--Ccc-
Q psy12566 141 DII-TLS-K-LP--------------------C-YAQLCHDLE--LIVFANDDLLKIGFNLMPDVSIIKTSLPF--SEC- 191 (220)
Q Consensus 141 D~~-~l~-~-~~--------------------~-~~~~~~~~l--~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~--~~~- 191 (220)
... ... . .. + ....+.+.+ +.+..++++..|.|...-|+-.|.+.+-. +..
T Consensus 100 NF~f~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~~ll~~s~l~~~~~~~wi~fhg~yD~~yl~k~l~~~~LP~~ 179 (286)
T d1uoca_ 100 NFEFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNN 179 (286)
T ss_dssp EBCCCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSS
T ss_pred EEEecCccccccHHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhccccccCCcceEEecchHHHHHHHHHHhCCCCCCC
Confidence 552 111 1 10 0 011122222 23446788888888778899888876532 211
Q ss_pred ---c----cCCcCceeeHHHHHHHhhhcc
Q psy12566 192 ---S----SYNKTSYLDLQLLWSKLVAET 213 (220)
Q Consensus 192 ---~----~~~~~~~~DL~~l~~~l~~~~ 213 (220)
| ......+.|+..+++.+....
T Consensus 180 ~~eF~~~v~~~FP~iyDtK~l~~~~~~~~ 208 (286)
T d1uoca_ 180 KEDFEWWVHQYMPNFYDLNLVYKIIQEFK 208 (286)
T ss_dssp HHHHHHHHHHHCSSEEEHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCcceeHHHHHHHhhccc
Confidence 1 111237999999988766533
No 11
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=28.41 E-value=34 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=19.2
Q ss_pred cccccccc-cCCCcEEEEeCHHHHHHHHHHHh
Q psy12566 70 AEEYYSLT-LPPNSIILVDTADKFASALQDFA 100 (220)
Q Consensus 70 ~~~y~~l~-l~~~~I~~Vdt~~~l~~~~~~l~ 100 (220)
+..++.+. -.+--|.+||+++.+++++..+.
T Consensus 54 ~~~~~~ls~dlPv~Ie~vd~~eki~~~l~~l~ 85 (102)
T d1o51a_ 54 RSDFFSLSPDLPIVLEIVDEEERINLFLKEID 85 (102)
T ss_dssp --------CCCEEEEEEEECHHHHHHHHHHHH
T ss_pred ccchhhhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 55677763 34556999999999999999976
No 12
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.91 E-value=31 Score=20.85 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=29.4
Q ss_pred chhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhhccCcc
Q psy12566 175 LMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQ 216 (220)
Q Consensus 175 ~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~~~~~~ 216 (220)
+..=++.+++.++. .+.|.+|-..+..=-++|+|+.
T Consensus 29 ~~~Aik~fQ~f~~L------~~TG~lD~~T~~~M~~PRCGvp 64 (67)
T d1su3a1 29 VVEKLKQMQEFFGL------KVTGKPDAETLKVMKQPRCGVP 64 (67)
T ss_dssp HHHHHHHHHHHTTC------CCCSSCCHHHHHHHTSCBCSSC
T ss_pred HHHHHHHHHHHcCC------CcccccCHHHHHHHCCCCCCCC
Confidence 45567888888887 8999999999977777799974
No 13
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=25.00 E-value=1.4e+02 Score=22.92 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCeEEEeeeeccCCCCCCCCCceEEEeEe--CCeEEEEEccCCCC-----CCchhhhhHHHHHhcc-cCCCeEEEEEcc
Q psy12566 104 HNSHLGLDTEWKPNLSGGSPPTLALLQIAT--RDRVYILDIITLSK-----LPCYAQLCHDLELIVF-ANDDLLKIGFNL 175 (220)
Q Consensus 104 ~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat--~~~v~LiD~~~l~~-----~~~~~~~~~~~l~~ll-~~~~IlKvG~~~ 175 (220)
+-++++||.|....- +...+.-.++|||. .+...++=...... .+.-.+++..|+..+- .||+|+ +||++
T Consensus 134 ~~r~~s~DIE~~~~~-g~~~~~~~I~~Is~~~~~~~~~~~~~~~~~~~v~~~~~E~~lL~~f~~~i~~~dPDii-~g~N~ 211 (347)
T d1tgoa1 134 ELKMLAFDIETLYHE-GEEFAEGPILMISYADEEGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDVL-ITYNG 211 (347)
T ss_dssp CCCEEEEEEEECCCS-SSSTTCSCEEEEEEEETTEEEEEESSCCCCTTEEECSSHHHHHHHHHHHHHHHCCSEE-EESSG
T ss_pred CceEEEEEEEeccCC-CCCcccCcEEEEEEecCCCcEEEEecCccCccceeeCCHHHHHHHHHHHHhhcCccce-eeccc
Confidence 447999999975321 11233446788885 33333332222210 1111233444433222 278876 99998
Q ss_pred hh-hHHHHHh
Q psy12566 176 MP-DVSIIKT 184 (220)
Q Consensus 176 ~~-Dl~~L~~ 184 (220)
.+ |+..|.+
T Consensus 212 ~~FD~pyL~~ 221 (347)
T d1tgoa1 212 DNFDFAYLKK 221 (347)
T ss_dssp GGTHHHHHHH
T ss_pred cCCchHHHHH
Confidence 65 9998875
No 14
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.55 E-value=26 Score=26.93 Aligned_cols=51 Identities=12% Similarity=-0.041 Sum_probs=34.4
Q ss_pred hcccCCCeEEEEEcchhhHHHHHhhCC--CCcc----c----cCCcCceeeHHHHHHHhhh
Q psy12566 161 IVFANDDLLKIGFNLMPDVSIIKTSLP--FSEC----S----SYNKTSYLDLQLLWSKLVA 211 (220)
Q Consensus 161 ~ll~~~~IlKvG~~~~~Dl~~L~~~~~--~~~~----~----~~~~~~~~DL~~l~~~l~~ 211 (220)
.+..++++..|+|...-|+-.|.+.+- -+.. | ..--..++|+..+++....
T Consensus 134 ~~~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP~vyDtK~l~~~~~~ 194 (252)
T d2d5ra1 134 GVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN 194 (252)
T ss_dssp TSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT
T ss_pred hhhhcCCCcEEEecchhHHHHHHHHHcCCCCCCCHHHHHHHHHHHCchHhhHHHHHhhccC
Confidence 345679999999999999998887652 1211 1 0112368999988766543
No 15
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=21.68 E-value=18 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhccCCCCeEEEe-eeeccCCC
Q psy12566 88 TADKFASALQDFARLDHNSHLGLD-TEWKPNLS 119 (220)
Q Consensus 88 t~~~l~~~~~~l~~l~~~~~VG~D-~Ew~p~~~ 119 (220)
++.++.++++. +.+.++||+| +|..|.+.
T Consensus 248 ~~~e~~~i~~~---l~~~~~vg~DivE~~P~~D 277 (301)
T d1gq6a_ 248 LSREVLALLRC---VGDLKPVGFDVMEVSPLYD 277 (301)
T ss_dssp CHHHHHHHGGG---GGGSEEEEEEEECBCGGGC
T ss_pred CHHHHHHHHHH---HcCCCeEEEEEEEECCCCC
Confidence 34566666666 7777899999 89999763
No 16
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=20.85 E-value=39 Score=20.25 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=28.4
Q ss_pred chhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhhccCcc
Q psy12566 175 LMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQ 216 (220)
Q Consensus 175 ~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~~~~~~ 216 (220)
+..=++.+++.++. .+.|.+|-..+..--.+|+|+.
T Consensus 28 l~~Ai~~~Q~f~~L------~~TG~lD~~T~~~M~~PRCGvp 63 (65)
T d1slma1 28 VVKKIREMQKFLGL------EVTGKLDSDTLEVMRKPRCGVP 63 (65)
T ss_dssp HHHHHHHHHHHTTC------CCCSSCCHHHHHHTTSCBCSSC
T ss_pred HHHHHHHHHHHcCC------CccccCCHHHHHHHCcCCCCCC
Confidence 44457888888887 8999999999876666699874
Done!