RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12566
         (220 letters)



>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 206

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 19/124 (15%)

Query: 82  SIILVDTADKFASALQDF---ARLDHNSHLGLDTEWKPNLSGGSPPT------LALLQIA 132
             I V ++   +  L      + L+ N  +  D  W          T      L+ ++++
Sbjct: 20  KTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLS 79

Query: 133 TRDRVYILDIITLSKLPCYAQLCHDLELI--VFANDDLLKIGFNLMPDVSIIKTSLPFSE 190
           TR+    L +              +L+ +   FA+  +  +G  +  D+ +++ +     
Sbjct: 80  TRNLCLFLRLPKP--------FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVI 131

Query: 191 CSSY 194
            ++ 
Sbjct: 132 RNAI 135


>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
           {Enterobacter cloacae [TaxId: 550]}
          Length = 161

 Score = 25.1 bits (54), Expect = 6.3
 Identities = 5/62 (8%), Positives = 14/62 (22%), Gaps = 2/62 (3%)

Query: 120 GGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDV 179
             +      ++ A  D V  +       L             +       ++G      +
Sbjct: 85  ASTGAVKEAIEGA--DTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGI 142

Query: 180 SI 181
            +
Sbjct: 143 PM 144


>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 340

 Score = 24.9 bits (54), Expect = 7.7
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 109 GLDTEWKPNLSGGSPPTLALLQIATRDR-------VYI-LDIITLSKLPCYAQLCHDLEL 160
           GLD      +    PPT++    ATR R       V I L+++ +   P   +   ++E 
Sbjct: 207 GLDQAADVKVPSVGPPTIS----ATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQ 262

Query: 161 IVFAN 165
            + ++
Sbjct: 263 WMRSH 267


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 853,538
Number of extensions: 38693
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 3
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)