BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12567
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC7|B Chain B, Crystal Structure Of The Full Dna Binding Domain Of
Gata3-Complex 2
pdb|4HC9|A Chain A, Dna Binding By Gata Transcription Factor-Complex 3
pdb|4HCA|A Chain A, Dna Binding By Gata Transcription Factor-Complex 1
Length = 115
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTE-G 78
GRECVNCGA STPLWRRDGTGHYLCNA G +R L P + G
Sbjct: 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIK--PKRRLSAARRAG 59
Query: 79 RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
C NC +T LWRR+ G +CNACGLY+K++ +NRPL
Sbjct: 60 TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLT 100
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/52 (84%), Positives = 45/52 (86%)
Query: 78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
GRECVNCGA STPLWRRDGTGHYLCNACGLYHKMNG NRPL+K RRL R
Sbjct: 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAAR 56
>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P21 Crystal Form
pdb|3VEK|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
pdb|3VEK|F Chain F, Both Zn Fingers Of Gata1 Bound To Palindromic Dna
Recognition Site, P1 Crystal Form
Length = 119
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 43/49 (87%)
Query: 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 125
E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL++ +R+
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRM 49
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 19 EGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEG 78
E RECVNCGA +TPLWRRD TGHYLCNA G +R L I G
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG---QNRPLIRP-KKRMIVSKRAG 56
Query: 79 RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
+C NC +T LWRR+ +G +CNACGLY K++ +NRPL
Sbjct: 57 TQCTNCQTTTTTLWRRNASGDPVCNACGLYFKLHQVNRPLT 97
>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural
Basis For The Gata-1FRIEND OF GATA INTERACTION
Length = 46
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 120
+E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL++
Sbjct: 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 18 TEGRECVNCGAISTPLWRRDGTGHYLCNA 46
+E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 2 SEARECVNCGATATPLWRRDRTGHYLCNA 30
>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine
Gata-1, Nmr, 25 Structures
Length = 46
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
+E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL+
Sbjct: 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 18 TEGRECVNCGAISTPLWRRDGTGHYLCNA 46
+E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 2 SEARECVNCGATATPLWRRDRTGHYLCNA 30
>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
pdb|2L6Z|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 39
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115
E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG N
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 19 EGRECVNCGAISTPLWRRDGTGHYLCNA 46
E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 1 EARECVNCGATATPLWRRDRTGHYLCNA 28
>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding
pdb|3DFV|C Chain C, Adjacent Gata Dna Binding
pdb|3DFX|A Chain A, Opposite Gata Dna Binding
pdb|3DFX|B Chain B, Opposite Gata Dna Binding
Length = 63
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
G C NC +T LWRR+ G +CNACGLY+K++ +NRPL
Sbjct: 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLT 48
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
G C NC +T LWRR+ G +CNA
Sbjct: 7 GTSCANCQTTTTTLWRRNANGDPVCNA 33
>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|J Chain J, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|K Chain K, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|L Chain L, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|M Chain M, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|N Chain N, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|O Chain O, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|P Chain P, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|I Chain I, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|J Chain J, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|K Chain K, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|L Chain L, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|M Chain M, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|N Chain N, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|O Chain O, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|P Chain P, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|I Chain I, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|J Chain J, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|K Chain K, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|L Chain L, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|M Chain M, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|N Chain N, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|O Chain O, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|P Chain P, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 43
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 81 CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
C NC +TPLWRR+ G LCNACGL+ K++G+ RPL
Sbjct: 4 CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 41
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 23 CVNCGAISTPLWRRDGTGHYLCNA 46
C NC +TPLWRR+ G LCNA
Sbjct: 4 CTNCFTQTTPLWRRNPEGQPLCNA 27
>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
Regularized Mean Structure
pdb|5GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain
Of Area Complexed To A 13bp Dna Containing A Cgata Site,
35 Structures
Length = 66
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 81 CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
C NC +TPLWRR+ G LCNACGL+ K++G+ RPL
Sbjct: 12 CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 49
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 23 CVNCGAISTPLWRRDGTGHYLCNA 46
C NC +TPLWRR+ G LCNA
Sbjct: 12 CTNCFTQTTPLWRRNPEGQPLCNA 35
>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc
Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
pdb|1GAU|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc
Containing Dna Binding Domain Of The Erythroid
Transcription Factor Gata-1 By Multidimensional Nmr
Length = 60
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
G C NC +T LWRR G +CNACGLY+K++ +NRPL
Sbjct: 4 GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLT 45
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
G C NC +T LWRR G +CNA
Sbjct: 4 GTVCSNCQTSTTTLWRRSPMGDPVCNA 30
>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of Chicken
Gata-1 Bound To Dna, 34 Structures
pdb|2GAT|A Chain A, Solution Structure Of The C-Terminal Domain Of Chicken
Gata- 1 Bound To Dna, Nmr, Regularized Mean Structure
Length = 66
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
G C NC +T LWRR G +CNACGLY+K++ +NRPL
Sbjct: 4 GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLT 45
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
G C NC +T LWRR G +CNA
Sbjct: 4 GTVCSNCQTSTTTLWRRSPMGDPVCNA 30
>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, 34 Structures
pdb|6GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding
Domain Of Area Complexed To A 13 Bp Dna Containing A
Tgata Site, Regularized Mean Structure
Length = 66
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 81 CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
C NC +TP+WRR+ G LCNACGL+ K++G+ RPL
Sbjct: 12 CTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPL 49
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 23 CVNCGAISTPLWRRDGTGHYLCNA 46
C NC +TP+WRR+ G LCNA
Sbjct: 12 CTNCFTQTTPVWRRNPEGQPLCNA 35
>pdb|2KAE|A Chain A, Data-Driven Model Of Med1:dna Complex
Length = 71
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 80 ECVNCGAISTPLWR--RDGTGHYLCNACGLYHKMNGMNRPLVK----QPRRLRFDRGN 131
+C NC T WR R G CNAC +Y + RP+ Q R+L+ N
Sbjct: 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETN 66
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone Acetyltransferase
3 In Complex With Acetylcoenzyme A
Length = 284
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 46 ARLFSTSFTGYFIMSRFLFASLPVEDIE------YFTEGREC-----VNCGAISTPLWRR 94
A+LF T Y+ + FLF L D++ YF++ + C V+C I P ++R
Sbjct: 101 AKLFLDHXTLYYDVEPFLFYVLTQNDVKGCHLVGYFSKEKHCQQKYNVSCIMI-LPQYQR 159
Query: 95 DGTGHYLCNACGLYHKMNG 113
G G +L + L K G
Sbjct: 160 KGYGRFLIDFSYLLSKREG 178
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 30.0 bits (66), Expect = 0.41, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 13 DIEYFTEGRECVNCG----AISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLP 68
+I+ F E C N G IST +RD HY+ L +TS + R L S
Sbjct: 200 NIDPFVEKYVCENLGLEAAPISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSET 259
Query: 69 VEDIEYFTEGRE 80
E E F +G++
Sbjct: 260 REVEEAFAKGQK 271
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 6 FASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFA 65
FA++P E IE + + +ST +RD +Y+ L +TS + + R L
Sbjct: 187 FANIPPE-IESYVCKHLGIGTAPVSTQTLQRDRHAYYIATLALIATSLEKFAVEIRNLQK 245
Query: 66 SLPVEDIEYFTEGRE 80
+ E E F +G++
Sbjct: 246 TETREVEEAFAKGQK 260
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 13 DIEYFTEGRECVNCG----AISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLP 68
+I+ F E C G IST +RD Y+ L +TS + + R L S
Sbjct: 189 NIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET 248
Query: 69 VEDIEYFTEGRE 80
E E+F +G++
Sbjct: 249 REVEEFFAKGQK 260
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 80 ECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD 128
+C +CG IS P W G +LC C H+ G++ +V R ++ D
Sbjct: 24 KCFDCG-ISNPDWVSVNHGIFLCINCSGVHRSLGVHISIV---RSIKMD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.143 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,650,432
Number of Sequences: 62578
Number of extensions: 188859
Number of successful extensions: 383
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 32
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)