Query psy12567
Match_columns 142
No_of_seqs 202 out of 914
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:40:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hc9_A Trans-acting T-cell-spe 100.0 8.1E-37 2.8E-41 225.2 5.5 110 18-131 3-112 (115)
2 3dfx_A Trans-acting T-cell-spe 99.8 1.2E-21 4.2E-26 130.9 4.4 55 76-130 5-59 (63)
3 4gat_A Nitrogen regulatory pro 99.8 1.7E-21 5.8E-26 131.2 4.2 57 76-132 7-63 (66)
4 1gnf_A Transcription factor GA 99.8 6.1E-21 2.1E-25 120.4 4.5 44 77-120 3-46 (46)
5 2vut_I AREA, nitrogen regulato 99.8 5.3E-21 1.8E-25 119.1 3.4 42 79-120 2-43 (43)
6 4hc9_A Trans-acting T-cell-spe 99.8 5.5E-19 1.9E-23 129.9 5.3 63 77-139 4-70 (115)
7 2kae_A GATA-type transcription 99.7 9.8E-20 3.3E-24 124.2 -0.6 59 76-135 6-67 (71)
8 1gnf_A Transcription factor GA 99.5 6.3E-15 2.2E-19 92.8 2.1 43 18-63 2-44 (46)
9 4gat_A Nitrogen regulatory pro 99.4 1.9E-13 6.3E-18 91.9 2.3 41 16-56 5-45 (66)
10 2vut_I AREA, nitrogen regulato 99.3 1.4E-13 4.9E-18 85.4 0.5 35 21-55 2-36 (43)
11 3dfx_A Trans-acting T-cell-spe 99.3 6.4E-13 2.2E-17 88.6 2.2 39 18-56 5-43 (63)
12 2kae_A GATA-type transcription 99.1 6E-12 2E-16 85.6 0.8 37 18-55 6-44 (71)
13 3h0g_I DNA-directed RNA polyme 91.4 0.16 5.5E-06 36.1 3.4 91 20-110 4-111 (113)
14 1twf_I B12.6, DNA-directed RNA 87.8 0.27 9.4E-06 35.4 2.3 93 20-112 4-113 (122)
15 3qt1_I DNA-directed RNA polyme 86.2 0.68 2.3E-05 34.1 3.7 93 17-111 21-132 (133)
16 1dl6_A Transcription factor II 85.2 0.52 1.8E-05 29.9 2.3 32 77-110 10-41 (58)
17 1dl6_A Transcription factor II 84.2 0.99 3.4E-05 28.5 3.3 31 17-49 8-38 (58)
18 2iqj_A Stromal membrane-associ 82.2 0.41 1.4E-05 35.3 1.0 29 18-47 25-53 (134)
19 2owa_A Arfgap-like finger doma 81.9 0.43 1.5E-05 35.5 1.0 30 18-48 34-63 (138)
20 1pft_A TFIIB, PFTFIIBN; N-term 80.7 0.49 1.7E-05 28.6 0.8 31 78-110 5-35 (50)
21 2crr_A Stromal membrane-associ 80.4 0.6 2E-05 34.7 1.4 29 18-47 27-55 (141)
22 2iqj_A Stromal membrane-associ 79.4 0.7 2.4E-05 34.0 1.4 41 74-115 23-63 (134)
23 3k7a_M Transcription initiatio 79.2 1.4 4.6E-05 36.4 3.3 33 17-49 18-50 (345)
24 2owa_A Arfgap-like finger doma 76.8 1.1 3.7E-05 33.3 1.8 42 73-115 31-72 (138)
25 2p57_A GTPase-activating prote 76.6 0.56 1.9E-05 35.2 0.2 30 18-48 35-64 (144)
26 3dwd_A ADP-ribosylation factor 76.6 1 3.5E-05 33.9 1.6 30 18-48 36-65 (147)
27 3k7a_M Transcription initiatio 76.1 1.3 4.5E-05 36.5 2.4 30 78-107 21-50 (345)
28 2crw_A ARF GAP 3, ADP-ribosyla 75.9 1.1 3.7E-05 33.7 1.7 29 18-47 27-55 (149)
29 2crr_A Stromal membrane-associ 73.7 1.5 5.1E-05 32.5 1.9 39 75-114 26-64 (141)
30 2b0o_E UPLC1; arfgap, structur 73.3 1.3 4.5E-05 34.9 1.6 29 18-47 40-68 (301)
31 2crw_A ARF GAP 3, ADP-ribosyla 73.2 1.4 4.7E-05 33.2 1.6 47 74-121 25-75 (149)
32 3dwd_A ADP-ribosylation factor 73.2 1.6 5.4E-05 32.9 1.9 43 72-115 32-74 (147)
33 2olm_A Nucleoporin-like protei 73.0 1.1 3.8E-05 33.2 1.1 30 18-48 23-52 (140)
34 3cw2_K Translation initiation 71.9 4.5 0.00015 29.9 4.2 34 18-51 101-134 (139)
35 1k81_A EIF-2-beta, probable tr 70.4 0.54 1.8E-05 27.2 -1.0 28 80-107 2-29 (36)
36 2zjr_Z 50S ribosomal protein L 70.2 1.6 5.6E-05 28.0 1.2 26 18-51 28-53 (60)
37 3sub_A ADP-ribosylation factor 69.9 1.4 4.9E-05 33.7 1.0 28 19-47 21-48 (163)
38 3v2d_5 50S ribosomal protein L 69.2 1.5 5.3E-05 28.1 0.9 25 19-51 29-53 (60)
39 2p57_A GTPase-activating prote 68.8 1 3.5E-05 33.7 0.0 41 74-115 33-73 (144)
40 4bbr_M Transcription initiatio 66.8 1.3 4.6E-05 36.7 0.3 28 80-107 23-50 (345)
41 3k1f_M Transcription initiatio 66.4 2 6.8E-05 33.8 1.2 32 77-108 20-51 (197)
42 2b0o_E UPLC1; arfgap, structur 65.5 2.7 9.4E-05 33.1 1.9 41 73-114 37-77 (301)
43 2fiy_A Protein FDHE homolog; F 64.8 3.1 0.00011 34.4 2.2 72 18-112 180-266 (309)
44 3cw2_K Translation initiation 64.6 3.1 0.00011 30.8 2.0 29 79-107 104-132 (139)
45 1zbd_B Rabphilin-3A; G protein 63.8 7.5 0.00026 28.3 3.9 25 19-47 54-78 (134)
46 2d74_B Translation initiation 63.8 2.9 9.8E-05 31.4 1.6 38 79-123 105-142 (148)
47 2olm_A Nucleoporin-like protei 63.2 2.5 8.4E-05 31.3 1.2 40 74-114 21-60 (140)
48 2d74_B Translation initiation 63.1 4.7 0.00016 30.2 2.7 31 21-51 105-135 (148)
49 3sub_A ADP-ribosylation factor 59.3 4.2 0.00015 31.0 1.9 39 76-115 20-58 (163)
50 1nee_A EIF-2-beta, probable tr 59.1 3.3 0.00011 30.6 1.2 29 79-107 103-131 (138)
51 1nee_A EIF-2-beta, probable tr 57.8 4.8 0.00017 29.7 2.0 31 21-51 103-133 (138)
52 3lju_X ARF-GAP with dual PH do 53.6 4.1 0.00014 34.1 1.1 28 19-47 33-60 (386)
53 3jue_A Arfgap with coiled-coil 52.3 6.1 0.00021 32.5 1.9 41 73-114 40-80 (368)
54 4bbr_M Transcription initiatio 51.9 4.4 0.00015 33.6 1.0 33 17-49 18-50 (345)
55 3k1f_M Transcription initiatio 51.8 5.9 0.0002 31.1 1.6 33 17-49 18-50 (197)
56 3jue_A Arfgap with coiled-coil 50.3 6.1 0.00021 32.5 1.6 29 18-47 43-71 (368)
57 3o47_A ADP-ribosylation factor 49.7 4.3 0.00015 32.6 0.6 29 18-47 35-63 (329)
58 1dcq_A PYK2-associated protein 48.1 7.1 0.00024 30.2 1.6 41 74-115 13-53 (278)
59 1dcq_A PYK2-associated protein 43.9 8.6 0.00029 29.7 1.5 29 18-47 15-43 (278)
60 1nui_A DNA primase/helicase; z 42.2 9.7 0.00033 29.4 1.5 33 18-52 12-44 (255)
61 3o47_A ADP-ribosylation factor 40.9 11 0.00037 30.2 1.7 41 74-115 33-73 (329)
62 2e9h_A EIF-5, eukaryotic trans 38.9 9 0.00031 28.9 0.8 29 79-107 104-134 (157)
63 3lvq_E ARF-GAP with SH3 domain 36.2 11 0.00038 31.5 1.0 29 18-47 21-49 (497)
64 2g2k_A EIF-5, eukaryotic trans 35.1 6.6 0.00023 30.1 -0.5 29 79-107 97-127 (170)
65 2csz_A Synaptotagmin-like prot 34.9 18 0.00063 24.2 1.8 35 75-109 22-60 (76)
66 2g2k_A EIF-5, eukaryotic trans 33.5 8.4 0.00029 29.5 -0.1 32 21-52 97-130 (170)
67 1qyp_A RNA polymerase II; tran 32.4 19 0.00064 21.9 1.4 9 20-28 15-23 (57)
68 2e9h_A EIF-5, eukaryotic trans 31.5 12 0.00041 28.3 0.4 32 20-51 103-136 (157)
69 1x4u_A Zinc finger, FYVE domai 30.7 31 0.0011 22.6 2.4 22 27-49 1-22 (84)
70 3lju_X ARF-GAP with dual PH do 30.2 16 0.00055 30.4 1.0 35 75-110 31-65 (386)
71 3j20_Y 30S ribosomal protein S 30.1 19 0.00066 21.9 1.2 29 18-49 17-45 (50)
72 2ecv_A Tripartite motif-contai 29.0 67 0.0023 19.6 3.7 39 10-49 9-47 (85)
73 1d4u_A Nucleotide excision rep 28.6 27 0.00093 24.8 1.9 31 19-49 4-34 (111)
74 2ysj_A Tripartite motif-contai 28.6 52 0.0018 19.3 3.0 35 14-49 14-48 (63)
75 3lpe_B DNA-directed RNA polyme 28.5 14 0.00048 23.5 0.3 13 22-34 15-27 (59)
76 1wfk_A Zinc finger, FYVE domai 28.3 31 0.0011 23.0 2.1 35 76-110 31-65 (88)
77 2uzg_A Ubiquitin carboxyl-term 28.2 29 0.00099 23.6 1.9 24 19-50 24-49 (97)
78 1z2q_A LM5-1; membrane protein 27.9 36 0.0012 22.3 2.3 17 31-48 12-28 (84)
79 2yur_A Retinoblastoma-binding 27.5 61 0.0021 19.9 3.3 41 8-49 3-44 (74)
80 1y02_A CARP2, FYVE-ring finger 27.5 33 0.0011 24.5 2.2 6 101-106 59-64 (120)
81 2yw8_A RUN and FYVE domain-con 27.3 36 0.0012 22.2 2.2 19 29-48 8-26 (82)
82 1ovx_A ATP-dependent CLP prote 26.9 29 0.00098 22.7 1.6 29 78-107 18-48 (67)
83 3h0g_L DNA-directed RNA polyme 26.6 52 0.0018 21.1 2.8 28 18-49 19-46 (63)
84 2yrc_A Protein transport prote 26.1 40 0.0014 21.2 2.1 36 18-53 7-45 (59)
85 2djb_A Polycomb group ring fin 25.9 46 0.0016 20.3 2.5 39 10-48 5-43 (72)
86 1twf_L ABC10-alpha, DNA-direct 25.5 19 0.00065 23.5 0.6 28 76-107 26-53 (70)
87 3p8b_A DNA-directed RNA polyme 25.0 27 0.00091 23.7 1.2 34 18-60 21-57 (81)
88 1ryq_A DNA-directed RNA polyme 24.4 28 0.00096 22.9 1.2 16 19-34 22-38 (69)
89 3lvq_E ARF-GAP with SH3 domain 23.9 34 0.0012 28.5 2.0 40 74-114 19-58 (497)
90 2ecn_A Ring finger protein 141 23.4 52 0.0018 19.7 2.3 37 11-49 6-42 (70)
91 2co8_A NEDD9 interacting prote 23.1 1.1E+02 0.0037 19.2 4.0 22 9-30 4-25 (82)
92 2kv1_A Methionine-R-sulfoxide 23.0 88 0.003 22.7 3.8 23 26-48 4-27 (124)
93 3c5k_A HD6, histone deacetylas 22.3 57 0.002 22.7 2.6 24 18-50 22-45 (109)
94 1vq8_Z 50S ribosomal protein L 22.2 18 0.00061 24.4 -0.1 28 20-50 27-54 (83)
95 2ecw_A Tripartite motif-contai 22.0 81 0.0028 19.2 3.1 39 10-49 9-47 (85)
96 1vfy_A Phosphatidylinositol-3- 21.8 47 0.0016 21.1 1.9 9 78-86 35-43 (73)
97 3hcj_A MSRB, peptide methionin 21.6 42 0.0014 25.3 1.8 91 30-121 39-145 (154)
98 2ds5_A CLPX, ATP-dependent CLP 21.4 46 0.0016 20.4 1.7 29 78-107 11-41 (51)
99 2ct2_A Tripartite motif protei 20.7 74 0.0025 19.7 2.7 40 9-48 4-46 (88)
100 1wig_A KIAA1808 protein; LIM d 20.2 39 0.0013 20.9 1.3 21 97-117 51-71 (73)
No 1
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=100.00 E-value=8.1e-37 Score=225.24 Aligned_cols=110 Identities=46% Similarity=0.876 Sum_probs=91.1
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccccccccccccccccccccCCCccccccCCCCccccccCCCCCCccccCCC
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGT 97 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~~~~~R~~~~~~~~~~~~~~~~~~~C~nC~tt~Tp~WRr~~~ 97 (142)
..+++|+|||++.||+||++++|++||||||+|.+.+| .+||.++.. .+..........|+||+|++||+||+|++
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G---~nRP~~KpK-KR~~~~~~~~~~C~~C~t~~tp~WRr~~~ 78 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIKPK-RRLSAARRAGTSCANCQTTTTTLWRRNAN 78 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS---SCCCCSSCC-CCCCCCCCTTCCCTTTCCSCCSSCEECTT
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcc---ccccccccc-ccccccccccccCCCcCCCCcceeEECCC
Confidence 35789999999999999999999999999999988887 466654422 22233446679999999999999999999
Q ss_pred CCcccchhhhhHHhcCCCCCCCCCCCCcccccCC
Q psy12567 98 GHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGN 131 (142)
Q Consensus 98 G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~~ 131 (142)
|++|||||||||++|+++||++|++..|...+|.
T Consensus 79 g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~ 112 (115)
T 4hc9_A 79 GDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 112 (115)
T ss_dssp SCEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence 9999999999999999999999999888776543
No 2
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.84 E-value=1.2e-21 Score=130.86 Aligned_cols=55 Identities=40% Similarity=0.899 Sum_probs=49.9
Q ss_pred CCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCcccccC
Q psy12567 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRG 130 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~ 130 (142)
.....|+||++++||+||+|++|.+|||||||||++|+++||+.|+++.|....|
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~R 59 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNR 59 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCccccccC
Confidence 5578999999999999999999999999999999999999999999988775543
No 3
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.83 E-value=1.7e-21 Score=131.24 Aligned_cols=57 Identities=40% Similarity=0.803 Sum_probs=51.8
Q ss_pred CCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCcccccCCC
Q psy12567 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNF 132 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~~~ 132 (142)
.....|+||+|++||+||+|++|.+|||||||||++|+++||+.|++..|....|..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~ 63 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS 63 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence 457999999999999999999999999999999999999999999998887665543
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.82 E-value=6.1e-21 Score=120.37 Aligned_cols=44 Identities=84% Similarity=1.639 Sum_probs=41.7
Q ss_pred CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCC
Q psy12567 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 120 (142)
Q Consensus 77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~ 120 (142)
+...|+||++++||+||++++|.+|||||||||++|+++||+++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCCC
Confidence 46889999999999999999999999999999999999999974
No 5
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.81 E-value=5.3e-21 Score=119.08 Aligned_cols=42 Identities=52% Similarity=1.092 Sum_probs=40.4
Q ss_pred ccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCC
Q psy12567 79 RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 120 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~ 120 (142)
..|++|++++||+||+|++|.+|||||||||++|+++||++|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence 579999999999999999999999999999999999999976
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.75 E-value=5.5e-19 Score=129.93 Aligned_cols=63 Identities=75% Similarity=1.345 Sum_probs=54.9
Q ss_pred CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCccccc----CCCCCCcccc
Q psy12567 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR----GNFNCYERST 139 (142)
Q Consensus 77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R----~~~n~~~~~~ 139 (142)
.+++|+||++++||+||++++|++||||||||+++|+++||+.+++++....+ ...||.+.+|
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~t 70 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTT 70 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCc
Confidence 46899999999999999999999999999999999999999998888776643 4488888765
No 7
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.74 E-value=9.8e-20 Score=124.21 Aligned_cols=59 Identities=24% Similarity=0.472 Sum_probs=45.9
Q ss_pred CCCccccccCCCCCCcccc--CCCCCcccchhhhhHHhcCCCCCCCCCCCCcccc-cCCCCCC
Q psy12567 76 TEGRECVNCGAISTPLWRR--DGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD-RGNFNCY 135 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr--~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~-R~~~n~~ 135 (142)
.....|+||+|++||+||+ ++.| +|||||||||++|+++||+.++++.+..+ +++.|-.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~~~~~~rq~~~~ 67 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETNG 67 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHHHHHTTCC----
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhhhhhhhccCCCC
Confidence 3468999999999999999 5667 99999999999999999999887665544 3344443
No 8
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.49 E-value=6.3e-15 Score=92.76 Aligned_cols=43 Identities=63% Similarity=1.134 Sum_probs=37.7
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccccccccccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFL 63 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~~~~~R~~ 63 (142)
++.++|+||+++.||+||++++|.+||||||+|.+.+| ..||+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~---~~RP~ 44 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG---QNRPL 44 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC---SCCCC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC---CCCCC
Confidence 46789999999999999999999999999999988777 35554
No 9
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.36 E-value=1.9e-13 Score=91.89 Aligned_cols=41 Identities=37% Similarity=0.630 Sum_probs=36.8
Q ss_pred cCCCCcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567 16 YFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY 56 (142)
Q Consensus 16 ~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~ 56 (142)
+.....+|+||+++.||+||++++|.+||||||+|.+.++.
T Consensus 5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 5 EQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp CSSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 44678999999999999999999999999999998877664
No 10
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.33 E-value=1.4e-13 Score=85.42 Aligned_cols=35 Identities=43% Similarity=0.817 Sum_probs=32.5
Q ss_pred cccccCCCCCCCCcccCCCCccccccccccccccc
Q psy12567 21 RECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTG 55 (142)
Q Consensus 21 ~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G 55 (142)
.+|++|+++.||+||++++|.+||||||++.+.+|
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG 36 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence 58999999999999999999999999999877766
No 11
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.30 E-value=6.4e-13 Score=88.58 Aligned_cols=39 Identities=33% Similarity=0.715 Sum_probs=34.9
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY 56 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~ 56 (142)
....+|+||+++.||+||+++.|.+||||||++.+..+.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 456799999999999999999999999999998776663
No 12
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.14 E-value=6e-12 Score=85.64 Aligned_cols=37 Identities=27% Similarity=0.525 Sum_probs=31.1
Q ss_pred CCCcccccCCCCCCCCccc--CCCCccccccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRR--DGTGHYLCNARLFSTSFTG 55 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~--~~~g~~lCnacg~~~k~~G 55 (142)
....+|+||+++.||+||+ ++.| +||||||+|.+..+
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~ 44 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYN 44 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhC
Confidence 5678999999999999999 5667 99999999877665
No 13
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=91.37 E-value=0.16 Score=36.13 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=49.7
Q ss_pred CcccccCCCCCCCCcccCC-CCcccccccccccccccccccccccccC-CCc--------cccccCCCCccccccCCCCC
Q psy12567 20 GRECVNCGAISTPLWRRDG-TGHYLCNARLFSTSFTGYFIMSRFLFAS-LPV--------EDIEYFTEGRECVNCGAIST 89 (142)
Q Consensus 20 ~~~C~nCgt~~TplWr~~~-~g~~lCnacg~~~k~~G~~~~~R~~~~~-~~~--------~~~~~~~~~~~C~nC~tt~T 89 (142)
-.-|.+||..-.|.=-.+. .-.+.|..|+|........+.......+ ..+ ...........|.+|+..+.
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a 83 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEA 83 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCceE
Confidence 3569999998887421111 1268999999865433211110011110 000 01112234578999998764
Q ss_pred Ccc----ccCCCCC---cccchhhhhHH
Q psy12567 90 PLW----RRDGTGH---YLCNACGLYHK 110 (142)
Q Consensus 90 p~W----Rr~~~G~---~lCNaCGly~k 110 (142)
-.| |..+++. +.|-.||-.|+
T Consensus 84 ~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 84 VFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp EEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred EEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 433 4555553 67999998765
No 14
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=87.75 E-value=0.27 Score=35.36 Aligned_cols=93 Identities=17% Similarity=0.373 Sum_probs=53.1
Q ss_pred CcccccCCCCCCCCcccCC-CCcccccccccccccccccccccccccCCC-cc--------ccccCCCCccccccCCCCC
Q psy12567 20 GRECVNCGAISTPLWRRDG-TGHYLCNARLFSTSFTGYFIMSRFLFASLP-VE--------DIEYFTEGRECVNCGAIST 89 (142)
Q Consensus 20 ~~~C~nCgt~~TplWr~~~-~g~~lCnacg~~~k~~G~~~~~R~~~~~~~-~~--------~~~~~~~~~~C~nC~tt~T 89 (142)
..-|..||..-.|.=-..+ .+.+.|..|++................... +. ..........|..|+-.+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a 83 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSREN 83 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCEE
Confidence 4579999998887432212 347899999986543321111111111110 00 0112234678999998865
Q ss_pred Ccc----ccCCCCC---cccchhhhhHHhc
Q psy12567 90 PLW----RRDGTGH---YLCNACGLYHKMN 112 (142)
Q Consensus 90 p~W----Rr~~~G~---~lCNaCGly~k~~ 112 (142)
-.| |..++|. +.|..||-.|+-+
T Consensus 84 ~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 84 VFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp EEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred EEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 433 5566663 7999999987754
No 15
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.15 E-value=0.68 Score=34.07 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=27.2
Q ss_pred CCCCcccccCCCCCCCCcccCC---CCcccccccccccccccccccccccccCC-----Ccccc----ccCCCCcccccc
Q psy12567 17 FTEGRECVNCGAISTPLWRRDG---TGHYLCNARLFSTSFTGYFIMSRFLFASL-----PVEDI----EYFTEGRECVNC 84 (142)
Q Consensus 17 ~~~~~~C~nCgt~~TplWr~~~---~g~~lCnacg~~~k~~G~~~~~R~~~~~~-----~~~~~----~~~~~~~~C~nC 84 (142)
....+-|..||..-.|. .+. ...+.|..|+|.............++.+. -+.++ ........|..|
T Consensus 21 ~~~~~FCPeCgNmL~pk--ed~~~~~l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkC 98 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPR--EDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKC 98 (133)
T ss_dssp -CCCCBCTTTCCBCBCC--BCTTTCCBCCBCSSSCCBCCCSCSEEEECCC------------------------------
T ss_pred ccCCeeCCCCCCEeeEC--ccCCCceeEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCC
Confidence 35578899999999884 332 22689999998654433211101111100 01111 112335789999
Q ss_pred CCCCCCcc----ccCCCC---CcccchhhhhHHh
Q psy12567 85 GAISTPLW----RRDGTG---HYLCNACGLYHKM 111 (142)
Q Consensus 85 ~tt~Tp~W----Rr~~~G---~~lCNaCGly~k~ 111 (142)
+-.+.-.| |..+++ -++|..||-.|+-
T Consensus 99 g~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 99 HSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp ----------------------------------
T ss_pred CCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 98765433 445555 3789999988763
No 16
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.17 E-value=0.52 Score=29.87 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 110 (142)
Q Consensus 77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k 110 (142)
....|.+|+.++ +-.....|.++|..||+.+.
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSCCEECTTTCCEEC
T ss_pred ccccCcCCCCCc--eeEeCCCCeEEeCCCCCEEe
Confidence 345799998765 44445678999999999644
No 17
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=84.19 E-value=0.99 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 17 FTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 17 ~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
+.+...|.+||..+ +-.....|.++|..||+
T Consensus 8 ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 8 ALPRVTCPNHPDAI--LVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred ccccccCcCCCCCc--eeEeCCCCeEEeCCCCC
Confidence 34566899998754 55555678999999975
No 18
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=82.20 E-value=0.41 Score=35.29 Aligned_cols=29 Identities=21% Similarity=0.659 Sum_probs=25.4
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
.+-..|.+||+.. |.|-.-.-|-++|..|
T Consensus 25 p~N~~CaDCg~~~-P~WaS~n~GvfiC~~C 53 (134)
T 2iqj_A 25 EDNKFCADCQSKG-PRWASWNIGVFICIRC 53 (134)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTTEEECHHH
T ss_pred cCCCcCCcCcCCC-CCeEEecCCEEEhHhh
Confidence 4567999999975 9998888899999999
No 19
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=81.91 E-value=0.43 Score=35.47 Aligned_cols=30 Identities=23% Similarity=0.616 Sum_probs=25.8
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg 48 (142)
..-..|.+||+.. |.|-.-.-|-++|..|-
T Consensus 34 p~N~~CaDCga~~-P~WaS~n~GvfiC~~Cs 63 (138)
T 2owa_A 34 PENRTCFDCESRN-PTWLSLSFAVFICLNCS 63 (138)
T ss_dssp GGGGBCTTTCCBS-CCEEETTTTEEECHHHH
T ss_pred cCCCcCCCCcCCC-CCeEEecCCEEEhHhhh
Confidence 4567999999875 99988888999999993
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=80.74 E-value=0.49 Score=28.58 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=21.8
Q ss_pred CccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567 78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 110 (142)
Q Consensus 78 ~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k 110 (142)
...|.+|+.+ ++-.....|..+|..||+.+.
T Consensus 5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCc--ceEEcCCCCeEECcccCCccc
Confidence 4579999774 454444567889999999554
No 21
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.40 E-value=0.6 Score=34.69 Aligned_cols=29 Identities=24% Similarity=0.673 Sum_probs=25.0
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+. -|.|-.-.-|-++|..|
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~C 55 (141)
T 2crr_A 27 EDNKYCADCEAK-GPRWASWNIGVFICIRC 55 (141)
T ss_dssp GGGSSCSSSCCS-SCCSEETTTTEECCHHH
T ss_pred ccCCcCCCCCCC-CCCeEEeccCeEEhhhh
Confidence 456799999986 48998888899999999
No 22
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=79.38 E-value=0.7 Score=34.04 Aligned_cols=41 Identities=22% Similarity=0.613 Sum_probs=34.0
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
.......|++|++.. |.|-.-..|-.||-.|.-..+.-|++
T Consensus 23 ~~p~N~~CaDCg~~~-P~WaS~n~GvfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 23 LEEDNKFCADCQSKG-PRWASWNIGVFICIRCAGIHRNLGVH 63 (134)
T ss_dssp TSGGGGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred cCcCCCcCCcCcCCC-CCeEEecCCEEEhHhhhHHHhcCCCC
Confidence 446789999999875 99999999999999998777766643
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=79.24 E-value=1.4 Score=36.43 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.2
Q ss_pred CCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 17 FTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 17 ~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
......|.+||...+.+-....+|.++|..||+
T Consensus 18 ~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred ccCCCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 345668999998754455556789999999985
No 24
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=76.76 E-value=1.1 Score=33.28 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=34.7
Q ss_pred ccCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 73 EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 73 ~~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
........|++|++.. |.|-.-.-|-.||-.|.-..|.-|++
T Consensus 31 ~~~p~N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 31 RNRPENRTCFDCESRN-PTWLSLSFAVFICLNCSSDHRKMGVH 72 (138)
T ss_dssp HHSGGGGBCTTTCCBS-CCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred HcCcCCCcCCCCcCCC-CCeEEecCCEEEhHhhhHHHhCCCCC
Confidence 3446789999999875 99999999999999998877776654
No 25
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=76.61 E-value=0.56 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.734 Sum_probs=25.5
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg 48 (142)
.+-+.|.+||+.. |.|-.-.-|-++|..|-
T Consensus 35 p~N~~CaDCga~~-P~WaS~n~GvfiC~~Cs 64 (144)
T 2p57_A 35 PTNKACFDCGAKN-PSWASITYGVFLCIDCS 64 (144)
T ss_dssp GGGGBCTTTCCBS-CCEEEGGGTEEECHHHH
T ss_pred CCCCcCCCCcCCC-CCeEEeccCEEEhhhch
Confidence 4568999999865 99988888999999993
No 26
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=76.57 E-value=1 Score=33.93 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=25.8
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg 48 (142)
..-..|.+||+.. |.|-.-.-|-+||..|-
T Consensus 36 p~N~~CaDCga~~-P~WaS~nlGvfiC~~CS 65 (147)
T 3dwd_A 36 DENNVCFECGAFN-PQWVSVTYGIWICLECS 65 (147)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHHH
T ss_pred cCCCccCCCCCCC-CCeEEecccEeEhHhhC
Confidence 4567999999975 99998888999999993
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=76.10 E-value=1.3 Score=36.50 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=14.9
Q ss_pred CccccccCCCCCCccccCCCCCcccchhhh
Q psy12567 78 GRECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 78 ~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
...|.+|+.+.+.+-.....|.++|..||+
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 345666665432222233455666666665
No 28
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.95 E-value=1.1 Score=33.72 Aligned_cols=29 Identities=31% Similarity=0.757 Sum_probs=25.3
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+. -|.|-.-.-|-++|..|
T Consensus 27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~C 55 (149)
T 2crw_A 27 PTNKVCFDCGAK-NPSWASITYGVFLCIDC 55 (149)
T ss_dssp TTTSBCSSSCCB-SCCCEETTTTEECCHHH
T ss_pred cCCCcCCCCcCC-CCCcEEeccCEEEchhc
Confidence 466899999985 58998888899999999
No 29
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.72 E-value=1.5 Score=32.50 Aligned_cols=39 Identities=26% Similarity=0.658 Sum_probs=32.7
Q ss_pred CCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567 75 FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 114 (142)
Q Consensus 75 ~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~ 114 (142)
......|++|++.. |.|-.-..|-.||-.|.-..+.-|+
T Consensus 26 ~p~N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 26 EEDNKYCADCEAKG-PRWASWNIGVFICIRCAGIHRNLGV 64 (141)
T ss_dssp SGGGSSCSSSCCSS-CCSEETTTTEECCHHHHHHHHHHCT
T ss_pred CccCCcCCCCCCCC-CCeEEeccCeEEhhhhhHhHhcCCC
Confidence 45678999999874 8999999999999999877776664
No 30
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=73.33 E-value=1.3 Score=34.91 Aligned_cols=29 Identities=28% Similarity=0.712 Sum_probs=25.5
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+.. |.|-.-.-|.++|..|
T Consensus 40 ~~n~~c~dc~~~~-p~w~s~~~g~~~c~~c 68 (301)
T 2b0o_E 40 PGNSQCCDCGAAD-PTWLSTNLGVLTCIQC 68 (301)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHH
T ss_pred CCCCcCCCCCCCC-CCeEEeecCeEEcHHH
Confidence 4567999999965 9999888899999999
No 31
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.23 E-value=1.4 Score=33.16 Aligned_cols=47 Identities=28% Similarity=0.613 Sum_probs=37.3
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC----CCCCCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN----RPLVKQ 121 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~----RP~~~~ 121 (142)
.......|++|+.. -|.|-.-.-|-.||-.|.-..|.-|++ |.+.|.
T Consensus 25 ~~p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD 75 (149)
T 2crw_A 25 SVPTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELD 75 (149)
T ss_dssp HSTTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSC
T ss_pred cCcCCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCCCCeeeccccC
Confidence 45678999999975 589999999999999998877776654 455543
No 32
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=73.19 E-value=1.6 Score=32.89 Aligned_cols=43 Identities=28% Similarity=0.669 Sum_probs=35.3
Q ss_pred cccCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 72 IEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 72 ~~~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
+........|++|++.. |.|-.-.-|-.||-.|.-..|.-|++
T Consensus 32 L~~~p~N~~CaDCga~~-P~WaS~nlGvfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 32 VRVQDENNVCFECGAFN-PQWVSVTYGIWICLECSGRHRGLGVH 74 (147)
T ss_dssp HHTSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred HHcCcCCCccCCCCCCC-CCeEEecccEeEhHhhChHHhcCCCC
Confidence 33457789999999975 99999999999999998877766654
No 33
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=73.04 E-value=1.1 Score=33.17 Aligned_cols=30 Identities=20% Similarity=0.614 Sum_probs=25.3
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg 48 (142)
.+-..|.+||+. -|.|-.-.-|-++|..|-
T Consensus 23 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~Cs 52 (140)
T 2olm_A 23 PHNRKCFDCDQR-GPTYVNMTVGSFVCTSCS 52 (140)
T ss_dssp GGGGSCTTTCSS-CCCEEETTTTEEECHHHH
T ss_pred cCCCcCCCCCCC-CCCceeeccCEEEchhcc
Confidence 345799999986 699988888999999993
No 34
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=71.94 E-value=4.5 Score=29.92 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFST 51 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~ 51 (142)
.+--.|..|+...|-+-..+..-..-|+|||...
T Consensus 101 ~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 101 KAYVECSTCKSLDTILKKEKKSWYIVCLACGAQT 134 (139)
T ss_dssp SCCSSCCSSSSSCCCSCSSCSTTTSSCCC-----
T ss_pred HHeeECCCCCCcCcEEEEeCCeEEEEecCCCCCC
Confidence 4456899999999999986555567899997543
No 35
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=70.45 E-value=0.54 Score=27.23 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=21.0
Q ss_pred cccccCCCCCCccccCCCCCcccchhhh
Q psy12567 80 ECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 80 ~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
.|..|+..+|-+=+++..=..-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence 5889999999987754222456999996
No 36
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=70.21 E-value=1.6 Score=27.95 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=19.8
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFST 51 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~ 51 (142)
..--+|.+||...=| |.+|..||+|.
T Consensus 28 p~l~~c~~cG~~~~p--------H~vc~~CG~Y~ 53 (60)
T 2zjr_Z 28 PNLTECPQCHGKKLS--------HHICPNCGYYD 53 (60)
T ss_dssp CCCEECTTTCCEECT--------TBCCTTTCBSS
T ss_pred CCceECCCCCCEeCC--------ceEcCCCCcCC
Confidence 334589999987544 67999999885
No 37
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=69.88 E-value=1.4 Score=33.70 Aligned_cols=28 Identities=29% Similarity=0.767 Sum_probs=24.6
Q ss_pred CCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
.-..|.+||+. -|.|-.-.-|-+||..|
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlGvflCi~C 48 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHGIFLCINC 48 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTTEEECHHH
T ss_pred CCCccccCCCC-CCCeEEecCCeeEHHhh
Confidence 35699999996 59999888899999999
No 38
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=69.19 E-value=1.5 Score=28.12 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=19.4
Q ss_pred CCcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNARLFST 51 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~ 51 (142)
.--+|.+||...=| |.+|..||+|.
T Consensus 29 ~l~~c~~cGe~~~~--------H~vc~~CG~Y~ 53 (60)
T 3v2d_5 29 TLVPCPECKAMKPP--------HTVCPECGYYA 53 (60)
T ss_dssp CCEECTTTCCEECT--------TSCCTTTCEET
T ss_pred ceeECCCCCCeecc--------eEEcCCCCcCC
Confidence 34589999886555 67999999885
No 39
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=68.76 E-value=1 Score=33.74 Aligned_cols=41 Identities=29% Similarity=0.719 Sum_probs=33.9
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
..+....|++|+... |.|-.-.-|-.||-.|.-..+.-|++
T Consensus 33 ~~p~N~~CaDCga~~-P~WaS~n~GvfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 33 AVPTNKACFDCGAKN-PSWASITYGVFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp HSGGGGBCTTTCCBS-CCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred cCCCCCcCCCCcCCC-CCeEEeccCEEEhhhchHHHcCCCCC
Confidence 356789999999865 89998899999999998877766653
No 40
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=66.76 E-value=1.3 Score=36.73 Aligned_cols=28 Identities=29% Similarity=0.727 Sum_probs=11.8
Q ss_pred cccccCCCCCCccccCCCCCcccchhhh
Q psy12567 80 ECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 80 ~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
.|.+|+...+-+--....|.++|..||+
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 4555554222222223344555555554
No 41
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=66.37 E-value=2 Score=33.75 Aligned_cols=32 Identities=25% Similarity=0.540 Sum_probs=20.4
Q ss_pred CCccccccCCCCCCccccCCCCCcccchhhhh
Q psy12567 77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLY 108 (142)
Q Consensus 77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly 108 (142)
....|..|+...+-+--....|.++|..||+.
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 34578888875443433345577888888874
No 42
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=65.49 E-value=2.7 Score=33.06 Aligned_cols=41 Identities=27% Similarity=0.639 Sum_probs=33.3
Q ss_pred ccCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567 73 EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 114 (142)
Q Consensus 73 ~~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~ 114 (142)
........|+.|+... |.|-.-.-|..+|-.|.-..+.-|+
T Consensus 37 ~~~~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 37 KSRPGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVHRELGV 77 (301)
T ss_dssp HTSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred hcCCCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHHHhhCC
Confidence 3456789999999965 9999999999999999766565454
No 43
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.77 E-value=3.1 Score=34.36 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=47.8
Q ss_pred CCCcccccCCCCCCCCcccC---CCC--cccccccccccccccccccccccccCCCccccccCCCCccccccCCCCCC-c
Q psy12567 18 TEGRECVNCGAISTPLWRRD---GTG--HYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTP-L 91 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~---~~g--~~lCnacg~~~k~~G~~~~~R~~~~~~~~~~~~~~~~~~~C~nC~tt~Tp-~ 91 (142)
-....|..||+..+-.+-+. ..| ...|.-|+..=. .....|.+||.+.-- .
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-----------------------~~R~~C~~Cg~~~~l~y 236 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-----------------------YVRIKCSHCEESKHLAY 236 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE-----------------------CCTTSCSSSCCCSCCEE
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-----------------------ecCcCCcCCCCCCCeeE
Confidence 45679999999887766552 356 567999953211 123689999998644 4
Q ss_pred cccCC-------CC--CcccchhhhhHHhc
Q psy12567 92 WRRDG-------TG--HYLCNACGLYHKMN 112 (142)
Q Consensus 92 WRr~~-------~G--~~lCNaCGly~k~~ 112 (142)
|.-.+ .+ -.+|..|+-|.|.-
T Consensus 237 ~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~ 266 (309)
T 2fiy_A 237 LSLEHDGQPAEKAVLRAETCPSCQGYLKQF 266 (309)
T ss_dssp ECCCC-CCCSTTCSEEEEEETTTTEEEEEE
T ss_pred EEecCccccCCCcceEEEEcccccchHhhh
Confidence 64443 33 26999999988753
No 44
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=64.64 E-value=3.1 Score=30.81 Aligned_cols=29 Identities=31% Similarity=0.627 Sum_probs=21.1
Q ss_pred ccccccCCCCCCccccCCCCCcccchhhh
Q psy12567 79 RECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
..|..|+..+|-+=+.+..=..-|+|||-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 132 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGA 132 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence 78999999999998754333578999996
No 45
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.82 E-value=7.5 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=14.3
Q ss_pred CCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
....|..|+.+-+.+. +.| .+|..|
T Consensus 54 ~~~~C~~C~~~~g~l~---~~g-~~C~~C 78 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLG---SAS-VVCEDC 78 (134)
T ss_dssp SSSBCSSSCCBCSTTS---CCE-EECTTT
T ss_pred CCccccccCCCccccc---CCC-CCCCCC
Confidence 4567888877665443 222 456665
No 46
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=63.79 E-value=2.9 Score=31.37 Aligned_cols=38 Identities=29% Similarity=0.584 Sum_probs=26.7
Q ss_pred ccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCC
Q psy12567 79 RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPR 123 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~ 123 (142)
..|..|+..+|-+=+.+..=..-|+|||- .+|+.+.|+
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa-------~~~V~~~k~ 142 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA-------ETPIQHLLE 142 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC-------CCCCCC---
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC-------Cccccchhh
Confidence 68999999999998754333578999985 456655543
No 47
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=63.17 E-value=2.5 Score=31.26 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=32.0
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 114 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~ 114 (142)
.......|++|++. -|.|-.-..|-.||-.|.-..+.-|+
T Consensus 21 ~~p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 21 GLPHNRKCFDCDQR-GPTYVNMTVGSFVCTSCSGSLRGLNP 60 (140)
T ss_dssp TSGGGGSCTTTCSS-CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred cCcCCCcCCCCCCC-CCCceeeccCEEEchhccchhccCCC
Confidence 34567999999986 58999999999999999776555443
No 48
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=63.12 E-value=4.7 Score=30.18 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=24.8
Q ss_pred cccccCCCCCCCCcccCCCCccccccccccc
Q psy12567 21 RECVNCGAISTPLWRRDGTGHYLCNARLFST 51 (142)
Q Consensus 21 ~~C~nCgt~~TplWr~~~~g~~lCnacg~~~ 51 (142)
-.|..|+...|-+-..+..-..-|+|||...
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCc
Confidence 4799999999999976544467899997654
No 49
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=59.33 E-value=4.2 Score=31.03 Aligned_cols=39 Identities=28% Similarity=0.740 Sum_probs=32.9
Q ss_pred CCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
.....|++|++. -|.|-.-.-|-.||-.|.-..|.-|++
T Consensus 20 p~N~~CaDCga~-~P~WaS~nlGvflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 20 ESNNKCFDCGIS-NPDWVSVNHGIFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred CCCCccccCCCC-CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence 457899999996 599999999999999998777766654
No 50
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=59.06 E-value=3.3 Score=30.61 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=23.4
Q ss_pred ccccccCCCCCCccccCCCCCcccchhhh
Q psy12567 79 RECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
..|..|+..+|-+=+.+..=..-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence 68999999999998754333478999985
No 51
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=57.83 E-value=4.8 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=24.9
Q ss_pred cccccCCCCCCCCcccCCCCccccccccccc
Q psy12567 21 RECVNCGAISTPLWRRDGTGHYLCNARLFST 51 (142)
Q Consensus 21 ~~C~nCgt~~TplWr~~~~g~~lCnacg~~~ 51 (142)
-.|..|+...|-+-..+..-..-|+|||...
T Consensus 103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTTEEECSTTSCCC
T ss_pred EECCCCCCcCcEEEEcCCeEEEEccCCCCCc
Confidence 4799999999999986655567899997543
No 52
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=53.62 E-value=4.1 Score=34.08 Aligned_cols=28 Identities=29% Similarity=0.748 Sum_probs=24.4
Q ss_pred CCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
+-..|.+||+. -|.|-.-.-|-+||..|
T Consensus 33 ~N~~C~dC~~~-~p~w~s~~~g~~~C~~C 60 (386)
T 3lju_X 33 GNARCADCGAP-DPDWASYTLGVFICLSC 60 (386)
T ss_dssp GGSBCTTTCCB-SCCEEETTTTEEECHHH
T ss_pred CCCcCccCCCC-CCCeEEecccEEEhhhh
Confidence 34589999996 78998888899999999
No 53
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=52.33 E-value=6.1 Score=32.46 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=33.4
Q ss_pred ccCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567 73 EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 114 (142)
Q Consensus 73 ~~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~ 114 (142)
........|++|+.. -|.|-.-.-|-.||-.|.-..+.-|+
T Consensus 40 ~~~~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c~~~hr~lg~ 80 (368)
T 3jue_A 40 QSVDGNAQCCDCREP-APEWASINLGVTLCIQCSGIHRSLGV 80 (368)
T ss_dssp HTSTTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred HcCCCcCcCCCCCCC-CCCeEEecCCeEEcHhHHHHHhccCC
Confidence 345678999999986 59999999999999999766665553
No 54
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=51.93 E-value=4.4 Score=33.58 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=23.2
Q ss_pred CCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 17 FTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 17 ~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
+.....|.+||...+.+-....+|.++|..||+
T Consensus 18 l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp ----CCCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cccCCcCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 344568999998656565566789999999985
No 55
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=51.76 E-value=5.9 Score=31.08 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 17 FTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 17 ~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
......|..||...+.+-.....|.++|..||+
T Consensus 18 ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cccCeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 345568999998655554455678999999986
No 56
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=50.28 E-value=6.1 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.568 Sum_probs=25.5
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+. -|.|-.-.-|-++|..|
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g~~~c~~c 71 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLGVTLCIQC 71 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTTEEECHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCCeEEcHhH
Confidence 456799999995 59999988999999999
No 57
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=49.71 E-value=4.3 Score=32.63 Aligned_cols=29 Identities=31% Similarity=0.765 Sum_probs=24.9
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+. -|.|-.-.-|-++|..|
T Consensus 35 ~~n~~c~dc~~~-~~~~~~~~~~~~~c~~c 63 (329)
T 3o47_A 35 DENNVCFECGAF-NPQWVSVTYGIWICLEC 63 (329)
T ss_dssp TTTTBCTTTCCB-SCCEEEGGGTEEECHHH
T ss_pred CCCCcCCCCCCC-CCCeEEecCCEEEChhh
Confidence 456799999985 57998888899999999
No 58
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=48.11 E-value=7.1 Score=30.18 Aligned_cols=41 Identities=29% Similarity=0.656 Sum_probs=33.4
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
.......|..||... |.|-.-.-|-.+|-.|.-..+.-|++
T Consensus 13 ~~~~n~~c~dc~~~~-p~w~s~~~g~~~c~~c~~~hr~lg~~ 53 (278)
T 1dcq_A 13 RMTGNDVCCDCGAPD-PTWLSTNLGILTCIECSGIHRELGVH 53 (278)
T ss_dssp HSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred cCCCCCcCCCCCCCC-CCeEEecCCeEEcHHHHHHHhhcCCC
Confidence 346689999999985 69999999999999997766666644
No 59
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=43.90 E-value=8.6 Score=29.70 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=25.0
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+.. |.|-.-.-|-++|..|
T Consensus 15 ~~n~~c~dc~~~~-p~w~s~~~g~~~c~~c 43 (278)
T 1dcq_A 15 TGNDVCCDCGAPD-PTWLSTNLGILTCIEC 43 (278)
T ss_dssp TTTTBCTTTCCBS-CCEEETTTTEEECHHH
T ss_pred CCCCcCCCCCCCC-CCeEEecCCeEEcHHH
Confidence 3456899999985 6999988999999999
No 60
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=42.23 E-value=9.7 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTS 52 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k 52 (142)
.....|..||.+.. +|-- .+|++.|+.||....
T Consensus 12 ~~~~~CP~Cg~~d~-~~~~-~dg~~~C~~Cg~~~~ 44 (255)
T 1nui_A 12 LYHIPCDNCGSSDG-NSLF-SDGHTFCYVCEKWTA 44 (255)
T ss_dssp EEEECCSSSCCSSC-EEEE-TTSCEEETTTCCEEC
T ss_pred ecCCcCCCCCCCCC-ceEe-CCCCeecccCCCcCC
Confidence 34668999999754 5533 467899999997643
No 61
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=40.91 E-value=11 Score=30.24 Aligned_cols=41 Identities=29% Similarity=0.670 Sum_probs=33.6
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~ 115 (142)
.......|++|+.. -|.|-.-.-|-.||-.|.-..+.-|++
T Consensus 33 ~~~~n~~c~dc~~~-~~~~~~~~~~~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 33 VQDENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH 73 (329)
T ss_dssp HSTTTTBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred cCCCCCcCCCCCCC-CCCeEEecCCEEEChhhhhhhcccCCC
Confidence 45678999999985 579999999999999998777766554
No 62
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.93 E-value=9 Score=28.93 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=22.6
Q ss_pred ccccccCCCCCCccccCCCC--Ccccchhhh
Q psy12567 79 RECVNCGAISTPLWRRDGTG--HYLCNACGL 107 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G--~~lCNaCGl 107 (142)
..|..|+..+|-+=.....+ ..-|+|||-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa 134 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGY 134 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence 68999999999997632333 468999986
No 63
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=36.17 E-value=11 Score=31.48 Aligned_cols=29 Identities=28% Similarity=0.728 Sum_probs=24.6
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR 47 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac 47 (142)
..-..|.+||+ .-|.|-.-.-|-++|..|
T Consensus 21 ~~n~~c~dc~~-~~p~w~s~~~~~~~c~~c 49 (497)
T 3lvq_E 21 PGNSQCCDCGA-ADPTWLSTNLGVLTCIQC 49 (497)
T ss_dssp TTTTBCTTTCC-BSCCEEETTTTEEECHHH
T ss_pred CCCCcccCCCC-CCCCEEEechhHHhHHhh
Confidence 34568999997 558999888899999999
No 64
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=35.14 E-value=6.6 Score=30.07 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=22.9
Q ss_pred ccccccCCCCCCccccCCCC--Ccccchhhh
Q psy12567 79 RECVNCGAISTPLWRRDGTG--HYLCNACGL 107 (142)
Q Consensus 79 ~~C~nC~tt~Tp~WRr~~~G--~~lCNaCGl 107 (142)
..|..|+..+|-|=+....+ ..-|+|||-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 68999999999997733344 468999985
No 65
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.88 E-value=18 Score=24.21 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=28.1
Q ss_pred CCCCccccccCCCCCCccccCCC--C--CcccchhhhhH
Q psy12567 75 FTEGRECVNCGAISTPLWRRDGT--G--HYLCNACGLYH 109 (142)
Q Consensus 75 ~~~~~~C~nC~tt~Tp~WRr~~~--G--~~lCNaCGly~ 109 (142)
....+.|+.|+..-..++-++.. + +-+|+.|+++.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccC
Confidence 46679999999999999877764 3 47899999864
No 66
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=33.49 E-value=8.4 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.2
Q ss_pred cccccCCCCCCCCcccCCCC--cccccccccccc
Q psy12567 21 RECVNCGAISTPLWRRDGTG--HYLCNARLFSTS 52 (142)
Q Consensus 21 ~~C~nCgt~~TplWr~~~~g--~~lCnacg~~~k 52 (142)
-.|..|+...|-+-.....+ ..-|+|||....
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 47999999999998732333 567999997543
No 67
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=32.39 E-value=19 Score=21.94 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=5.5
Q ss_pred CcccccCCC
Q psy12567 20 GRECVNCGA 28 (142)
Q Consensus 20 ~~~C~nCgt 28 (142)
...|.+||.
T Consensus 15 ~~~Cp~Cg~ 23 (57)
T 1qyp_A 15 KITCPKCGN 23 (57)
T ss_dssp ECCCTTTCC
T ss_pred EeECCCCCC
Confidence 345777766
No 68
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.54 E-value=12 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=24.0
Q ss_pred CcccccCCCCCCCCcccCCCC--ccccccccccc
Q psy12567 20 GRECVNCGAISTPLWRRDGTG--HYLCNARLFST 51 (142)
Q Consensus 20 ~~~C~nCgt~~TplWr~~~~g--~~lCnacg~~~ 51 (142)
--.|..|+..+|-+-.....+ ..-|.|||...
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 357999999999998632333 56799998654
No 69
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.70 E-value=31 Score=22.57 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=14.7
Q ss_pred CCCCCCCcccCCCCccccccccc
Q psy12567 27 GAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 27 gt~~TplWr~~~~g~~lCnacg~ 49 (142)
|+..++.|..|..- ..|..|..
T Consensus 1 ~~~~~~~W~pd~~~-~~C~~C~~ 22 (84)
T 1x4u_A 1 GSSGSSGRYPTNNF-GNCTGCSA 22 (84)
T ss_dssp CCCCCCCSCSCCCC-SSCSSSCC
T ss_pred CCCCCCccccCCCC-CcCcCcCC
Confidence 45678888776654 36777743
No 70
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=30.16 E-value=16 Score=30.42 Aligned_cols=35 Identities=29% Similarity=0.737 Sum_probs=29.2
Q ss_pred CCCCccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567 75 FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 110 (142)
Q Consensus 75 ~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k 110 (142)
......|++|++. -|.|-.-.-|-.||-.|.-..+
T Consensus 31 ~~~N~~C~dC~~~-~p~w~s~~~g~~~C~~Csg~hr 65 (386)
T 3lju_X 31 RPGNARCADCGAP-DPDWASYTLGVFICLSCSGIHR 65 (386)
T ss_dssp SGGGSBCTTTCCB-SCCEEETTTTEEECHHHHHHHH
T ss_pred CcCCCcCccCCCC-CCCeEEecccEEEhhhhchHhh
Confidence 4567889999997 6899999999999999976444
No 71
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.08 E-value=19 Score=21.87 Aligned_cols=29 Identities=17% Similarity=0.453 Sum_probs=18.8
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
..-+.|..||+.. .+ .+..+...|..||+
T Consensus 17 ~~~k~CP~CG~~~--fm-~~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 17 RKNKFCPRCGPGV--FM-ADHGDRWACGKCGY 45 (50)
T ss_dssp CSSEECSSSCSSC--EE-EECSSEEECSSSCC
T ss_pred EecccCCCCCCce--EE-ecCCCeEECCCCCC
Confidence 3467899998832 12 22335678999975
No 72
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=67 Score=19.56 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCccccCCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 10 PVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 10 ~~~~~~~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
+.+......+..+|..|...-...- .-+-||..|..|..
T Consensus 9 ~~~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~ 47 (85)
T 2ecv_A 9 ASGILVNVKEEVTCPICLELLTQPL-SLDCGHSFCQACLT 47 (85)
T ss_dssp CCCCCCCCCCCCCCTTTCSCCSSCB-CCSSSCCBCTTHHH
T ss_pred hHHHHHHccCCCCCCCCCcccCCce-eCCCCCHHHHHHHH
Confidence 3344455567789999987544322 23568999999953
No 73
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=28.63 E-value=27 Score=24.78 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=23.3
Q ss_pred CCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
+-..|..||......|-...=+..+|++|.-
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~ 34 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRD 34 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcc
Confidence 4567999998766655555668889999953
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=52 Score=19.32 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.1
Q ss_pred cccCCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 14 IEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 14 ~~~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
.....+..+|..|...-...-. -+-||..|..|..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~ 48 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCIT 48 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHH
T ss_pred HHhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHH
Confidence 3445667899999875443222 2568989998853
No 75
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=28.52 E-value=14 Score=23.51 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=11.6
Q ss_pred ccccCCCCCCCCc
Q psy12567 22 ECVNCGAISTPLW 34 (142)
Q Consensus 22 ~C~nCgt~~TplW 34 (142)
.|.||+..+|+.|
T Consensus 15 ~CpnC~~~tt~~~ 27 (59)
T 3lpe_B 15 ICPICHSPTSENW 27 (59)
T ss_dssp BCTTTCCBEESCE
T ss_pred CCCCCCCCccCCE
Confidence 6999999878888
No 76
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=28.32 E-value=31 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=18.2
Q ss_pred CCCccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK 110 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k 110 (142)
-....|..|-....++=..+..-.-+|+.|-....
T Consensus 31 CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 31 CGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp SCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 34567777766554442212111357888865433
No 77
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=28.20 E-value=29 Score=23.60 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=19.5
Q ss_pred CCcccccCCCCCCCCcccCCCCcccccc--cccc
Q psy12567 19 EGRECVNCGAISTPLWRRDGTGHYLCNA--RLFS 50 (142)
Q Consensus 19 ~~~~C~nCgt~~TplWr~~~~g~~lCna--cg~~ 50 (142)
....|..|++....+| +|.. ||..
T Consensus 24 ~~~~C~~C~~~~~~lw--------~CL~~~Cg~v 49 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLW--------ACLENRCSYV 49 (97)
T ss_dssp TTTCCSSSCCCCSSCE--------EECCTTCCCE
T ss_pred CCCcCcCcCCCCCCce--------eeecccCCCc
Confidence 4568999998888899 8998 8753
No 78
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.94 E-value=36 Score=22.27 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=9.1
Q ss_pred CCCcccCCCCcccccccc
Q psy12567 31 TPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 31 TplWr~~~~g~~lCnacg 48 (142)
.|.|..|... ..|..|.
T Consensus 12 ~~~W~pd~~~-~~C~~C~ 28 (84)
T 1z2q_A 12 KGYWQEDEDA-PACNGCG 28 (84)
T ss_dssp CSCCCCTTTC-CBCTTTC
T ss_pred CCccccCCCC-CCCcCcC
Confidence 4566655543 3566663
No 79
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=27.48 E-value=61 Score=19.90 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=27.7
Q ss_pred cCCCCccccCCCCcccccCCCCCCCCcccCC-CCccccccccc
Q psy12567 8 SLPVEDIEYFTEGRECVNCGAISTPLWRRDG-TGHYLCNARLF 49 (142)
Q Consensus 8 ~~~~~~~~~~~~~~~C~nCgt~~TplWr~~~-~g~~lCnacg~ 49 (142)
+.+........+...|..|...-+..-. -+ -||..|..|..
T Consensus 3 s~~~~~~~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~ 44 (74)
T 2yur_A 3 SGSSGEDDPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIR 44 (74)
T ss_dssp SSCCSCCCCSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHH
T ss_pred CCcccccccCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHH
Confidence 3445556666778899999875554333 34 58999999953
No 80
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.46 E-value=33 Score=24.52 Aligned_cols=6 Identities=50% Similarity=1.209 Sum_probs=3.3
Q ss_pred ccchhh
Q psy12567 101 LCNACG 106 (142)
Q Consensus 101 lCNaCG 106 (142)
+|+.|-
T Consensus 59 VC~~C~ 64 (120)
T 1y02_A 59 LCLLCQ 64 (120)
T ss_dssp EEHHHH
T ss_pred ECHHHH
Confidence 555553
No 81
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.29 E-value=36 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=6.4
Q ss_pred CCCCCcccCCCCcccccccc
Q psy12567 29 ISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 29 ~~TplWr~~~~g~~lCnacg 48 (142)
..-|.|..|..- ..|..|+
T Consensus 8 ~~~~~W~~d~~~-~~C~~C~ 26 (82)
T 2yw8_A 8 LKGHAWLKDDEA-THCRQCE 26 (82)
T ss_dssp -------CCCCC-CBCTTTC
T ss_pred cCCCccccCccC-CcccCcC
Confidence 344667655544 3566664
No 82
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=26.94 E-value=29 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=20.5
Q ss_pred CccccccCCCCCCc--cccCCCCCcccchhhh
Q psy12567 78 GRECVNCGAISTPL--WRRDGTGHYLCNACGL 107 (142)
Q Consensus 78 ~~~C~nC~tt~Tp~--WRr~~~G~~lCNaCGl 107 (142)
...|+-||-++..+ -=.|| |.++||.|.-
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-gvyICdeCI~ 48 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-SVYICDECVD 48 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-SCEEEHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-CCChhHHHHH
Confidence 36899999887543 11243 6789999975
No 83
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.57 E-value=52 Score=21.10 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=18.5
Q ss_pred CCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
.....|.+||+....- ..+..-|..||+
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----AKEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCC----SSSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecC----CCCceECCCCCc
Confidence 4567888888877643 223467888864
No 84
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=26.06 E-value=40 Score=21.16 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=29.6
Q ss_pred CCCccccc--CCCCCCCCcccCCCC-ccccccccccccc
Q psy12567 18 TEGRECVN--CGAISTPLWRRDGTG-HYLCNARLFSTSF 53 (142)
Q Consensus 18 ~~~~~C~n--Cgt~~TplWr~~~~g-~~lCnacg~~~k~ 53 (142)
.+...|.. |++.--|.++-+..| ...||-|.....+
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~ 45 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQF 45 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEEC
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCC
Confidence 55678988 999999999988876 7899999765443
No 85
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.89 E-value=46 Score=20.25 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=26.6
Q ss_pred CCCccccCCCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567 10 PVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARL 48 (142)
Q Consensus 10 ~~~~~~~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg 48 (142)
.........+...|..|...-.....-.+-||..|..|.
T Consensus 5 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci 43 (72)
T 2djb_A 5 SSGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCI 43 (72)
T ss_dssp CCCCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHH
T ss_pred chhhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHH
Confidence 344555666778999998765543333466898899885
No 86
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.50 E-value=19 Score=23.51 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=18.0
Q ss_pred CCCccccccCCCCCCccccCCCCCcccchhhh
Q psy12567 76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGL 107 (142)
Q Consensus 76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGl 107 (142)
...-.|.+||...... +....-|..||-
T Consensus 26 ~v~Y~C~~CG~~~e~~----~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLS----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCC----TTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeC----CCCCccCCCCCc
Confidence 3456788888876544 223456888885
No 87
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=24.97 E-value=27 Score=23.72 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccccc---cccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFS---TSFTGYFIMS 60 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~---~k~~G~~~~~ 60 (142)
..-+.|.+|+.+.+.. -|..|+.. ..+.|+..+.
T Consensus 21 m~~rAC~~C~~v~~~d---------~CPnCgs~~~T~~w~G~ViI~ 57 (81)
T 3p8b_A 21 MSEKACRHCHYITSED---------RCPVCGSRDLSEEWFDLVIIV 57 (81)
T ss_dssp -CCEEETTTCBEESSS---------SCTTTCCCCEESCEEEEEEES
T ss_pred hhHHHHhhCCCccCCC---------CCCCCCCCccCCccceEEEEe
Confidence 3457899999887752 38888753 3345654433
No 88
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=24.44 E-value=28 Score=22.87 Aligned_cols=16 Identities=25% Similarity=0.765 Sum_probs=8.3
Q ss_pred CCcccccCCCCC-CCCc
Q psy12567 19 EGRECVNCGAIS-TPLW 34 (142)
Q Consensus 19 ~~~~C~nCgt~~-TplW 34 (142)
+...|.|||.+. |+.|
T Consensus 22 ~~~~CPnC~s~~tS~~w 38 (69)
T 1ryq_A 22 SEDRCPVCGSRDLSEEW 38 (69)
T ss_dssp SSSSCTTTCCCCEESCE
T ss_pred cCCcCCCccCCccCCcc
Confidence 344566666544 4444
No 89
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=23.85 E-value=34 Score=28.46 Aligned_cols=40 Identities=28% Similarity=0.656 Sum_probs=31.7
Q ss_pred cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567 74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM 114 (142)
Q Consensus 74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~ 114 (142)
.......|..|+. .-|.|-.-..|-.+|-.|.=..|.-|+
T Consensus 19 ~~~~n~~c~dc~~-~~p~w~s~~~~~~~c~~c~~~hr~lg~ 58 (497)
T 3lvq_E 19 SRPGNSQCCDCGA-ADPTWLSTNLGVLTCIQCSGVHRELGV 58 (497)
T ss_dssp TSTTTTBCTTTCC-BSCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred cCCCCCcccCCCC-CCCCEEEechhHHhHHhhHHHHHhhcc
Confidence 4466899999996 458999999999999999765555443
No 90
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.44 E-value=52 Score=19.71 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCccccCCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 11 VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 11 ~~~~~~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
.+......+..+|..|-..-.. ..-+-||..|..|..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~ 42 (70)
T 2ecn_A 6 SGRVKQLTDEEECCICMDGRAD--LILPCAHSFCQKCID 42 (70)
T ss_dssp SCCCCCCCCCCCCSSSCCSCCS--EEETTTEEECHHHHH
T ss_pred hhhhhcCCCCCCCeeCCcCccC--cccCCCCcccHHHHH
Confidence 3444555677899999887666 555678888888853
No 91
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.15 E-value=1.1e+02 Score=19.22 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=10.7
Q ss_pred CCCCccccCCCCcccccCCCCC
Q psy12567 9 LPVEDIEYFTEGRECVNCGAIS 30 (142)
Q Consensus 9 ~~~~~~~~~~~~~~C~nCgt~~ 30 (142)
.|.+..........|..|+..-
T Consensus 4 ~~~~~~~~~~~~~~C~~C~~~I 25 (82)
T 2co8_A 4 GSSGQHQEAGAGDLCALCGEHL 25 (82)
T ss_dssp CCCCCCCCCCSSCBCSSSCCBC
T ss_pred CCCCCCcCCCCCCCCcccCCCc
Confidence 3444444444555566665533
No 92
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=22.98 E-value=88 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=15.3
Q ss_pred CCCCCCCC-cccCCCCcccccccc
Q psy12567 26 CGAISTPL-WRRDGTGHYLCNARL 48 (142)
Q Consensus 26 Cgt~~Tpl-Wr~~~~g~~lCnacg 48 (142)
|+.-+-.. |.....|.|+|..|+
T Consensus 4 C~~F~ge~y~~~~e~G~Y~C~~Cg 27 (124)
T 2kv1_A 4 CSFFGGEVFQNHFEPGVYVCAKCS 27 (124)
T ss_dssp CCCCCSCSGGGTTCCEEEEETTTC
T ss_pred ccCccCccccCCCCCEEEEecCCC
Confidence 55544553 444567899999997
No 93
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.31 E-value=57 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=17.9
Q ss_pred CCCcccccCCCCCCCCcccCCCCcccccccccc
Q psy12567 18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFS 50 (142)
Q Consensus 18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~ 50 (142)
.....|..|++.. .+| +|..||..
T Consensus 22 ~~~~~C~~C~~~~-~~W--------~CL~CG~v 45 (109)
T 3c5k_A 22 DVTQPCGDCGTIQ-ENW--------VCLSCYQV 45 (109)
T ss_dssp CTTCCCTTTCCCS-SEE--------EETTTCCE
T ss_pred CcCCcCccccCCC-Cee--------eeeecCcc
Confidence 3456799999875 357 79999764
No 94
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=22.20 E-value=18 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=20.5
Q ss_pred CcccccCCCCCCCCcccCCCCcccccccccc
Q psy12567 20 GRECVNCGAISTPLWRRDGTGHYLCNARLFS 50 (142)
Q Consensus 20 ~~~C~nCgt~~TplWr~~~~g~~lCnacg~~ 50 (142)
...|.+||. ++-.+.++|...|..|+.-
T Consensus 27 ~y~Cp~CG~---~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGE---DRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCC---EEEEEEETTEEEETTTCCE
T ss_pred cCcCCCCCC---cceeccCCCeEECCCCCCE
Confidence 568999997 2333555888899999753
No 95
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.98 E-value=81 Score=19.16 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCccccCCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567 10 PVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLF 49 (142)
Q Consensus 10 ~~~~~~~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~ 49 (142)
+........+..+|..|...-+..- .-+-||..|..|..
T Consensus 9 ~~~~~~~~~~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~ 47 (85)
T 2ecw_A 9 ASSVLEMIKEEVTCPICLELLKEPV-SADCNHSFCRACIT 47 (85)
T ss_dssp CCCCCCCCCTTTSCTTTCSCCSSCE-ECTTSCCBCHHHHH
T ss_pred hHHHHHhCccCCCCcCCChhhCcce-eCCCCCHHHHHHHH
Confidence 3344455566789999987544322 24568999999953
No 96
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.79 E-value=47 Score=21.08 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.9
Q ss_pred CccccccCC
Q psy12567 78 GRECVNCGA 86 (142)
Q Consensus 78 ~~~C~nC~t 86 (142)
...|..|-.
T Consensus 35 ~v~C~~Cs~ 43 (73)
T 1vfy_A 35 GVFCQEHSS 43 (73)
T ss_dssp CEECGGGSC
T ss_pred EEEcccccC
Confidence 344444443
No 97
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=21.60 E-value=42 Score=25.28 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCCCcccCCCCccccccccc--ccc------cccccccccccccCCCcccc-----ccCCCCccccccCCCCCCccccCC
Q psy12567 30 STPLWRRDGTGHYLCNARLF--STS------FTGYFIMSRFLFASLPVEDI-----EYFTEGRECVNCGAISTPLWRRDG 96 (142)
Q Consensus 30 ~TplWr~~~~g~~lCnacg~--~~k------~~G~~~~~R~~~~~~~~~~~-----~~~~~~~~C~nC~tt~Tp~WRr~~ 96 (142)
+.+.|.....|.|.|-.|+. +.+ ..|..-...+... ..+... .-.+....|.+|+..--=+...||
T Consensus 39 tg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~-~~v~~~~D~s~gm~RtEV~C~~Cg~HLGHVF~DGP 117 (154)
T 3hcj_A 39 CGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDP-AHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGP 117 (154)
T ss_dssp CCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCG-GGEEEECCTTTTTSCEEEEETTTCCEEEEEESCSC
T ss_pred cCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCc-cceEEeecCCCCceEEEEEeCCCCCccCCccCCCC
Confidence 45678888889999999983 322 2343111222111 111111 112345889999986544444443
Q ss_pred --CCCccc-chhhhhHHhcCCCCCCCCC
Q psy12567 97 --TGHYLC-NACGLYHKMNGMNRPLVKQ 121 (142)
Q Consensus 97 --~G~~lC-NaCGly~k~~~~~RP~~~~ 121 (142)
.|.--| |.-.|.+...+...|-.+.
T Consensus 118 ~ptg~RyCiNS~sL~F~p~~~~~p~~~~ 145 (154)
T 3hcj_A 118 PPTGERHCLNSVSLAFTEDGQPLPNPLQ 145 (154)
T ss_dssp TTTTCEEEECGGGEEEEETTSBCCCTTC
T ss_pred CCCCCEeeeceeeEEeeeCCCCCCCccc
Confidence 465445 7777765555555554443
No 98
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=21.38 E-value=46 Score=20.41 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=20.2
Q ss_pred CccccccCCCCCCc--cccCCCCCcccchhhh
Q psy12567 78 GRECVNCGAISTPL--WRRDGTGHYLCNACGL 107 (142)
Q Consensus 78 ~~~C~nC~tt~Tp~--WRr~~~G~~lCNaCGl 107 (142)
...|+-||-++..+ -=.|| |.++||.|.-
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-gv~IC~eCi~ 41 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-SVYICDECVD 41 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-SCEEEHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-CCEehHHHHH
Confidence 46799999877543 11243 6789999975
No 99
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.68 E-value=74 Score=19.67 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=26.3
Q ss_pred CCCCccccCCCCcccccCCCCCCCC---cccCCCCcccccccc
Q psy12567 9 LPVEDIEYFTEGRECVNCGAISTPL---WRRDGTGHYLCNARL 48 (142)
Q Consensus 9 ~~~~~~~~~~~~~~C~nCgt~~Tpl---Wr~~~~g~~lCnacg 48 (142)
.+..+.....+..+|..|...-... -..-+-||..|..|.
T Consensus 4 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci 46 (88)
T 2ct2_A 4 GSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCL 46 (88)
T ss_dssp CCCCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHH
T ss_pred CCccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHH
Confidence 3444555667788999998765431 122356898999885
No 100
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.20 E-value=39 Score=20.93 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=12.8
Q ss_pred CCCcccchhhhhHHhcCCCCC
Q psy12567 97 TGHYLCNACGLYHKMNGMNRP 117 (142)
Q Consensus 97 ~G~~lCNaCGly~k~~~~~RP 117 (142)
+|+++|..|....+.....||
T Consensus 51 ~~~~yC~~C~~~~~~~~~~r~ 71 (73)
T 1wig_A 51 GSSIWHPACRQAARTEDSGPS 71 (73)
T ss_dssp TTEEECTTHHHHTSSSSCCSC
T ss_pred CCEEEChHHChHhhcccccCC
Confidence 567889999764333344444
Done!