RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12567
         (142 letters)



>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 39

 Score = 72.8 bits (179), Expect = 4e-19
 Identities = 34/39 (87%), Positives = 35/39 (89%)

Query: 77  EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115
           E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG N
Sbjct: 1   EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39



 Score = 53.6 bits (129), Expect = 1e-11
 Identities = 24/28 (85%), Positives = 25/28 (89%)

Query: 19 EGRECVNCGAISTPLWRRDGTGHYLCNA 46
          E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 1  EARECVNCGATATPLWRRDRTGHYLCNA 28


>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 66

 Score = 68.9 bits (168), Expect = 3e-17
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           G  C NC   +T LWRR   G  +CNACGLY+K++ +NRPL
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPL 44



 Score = 49.2 bits (117), Expect = 1e-09
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
          G  C NC   +T LWRR   G  +CNA
Sbjct: 4  GTVCSNCQTSTTTLWRRSPMGDPVCNA 30


>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1
           {Emericella nidulans [TaxId: 162425]}
          Length = 42

 Score = 65.6 bits (160), Expect = 3e-16
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 81  CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 3   CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 40



 Score = 45.6 bits (108), Expect = 2e-08
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 23 CVNCGAISTPLWRRDGTGHYLCNA 46
          C NC   +TPLWRR+  G  LCNA
Sbjct: 3  CTNCFTQTTPLWRRNPEGQPLCNA 26


>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 26.3 bits (58), Expect = 0.39
 Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 2/28 (7%)

Query: 80  ECVNCGAISTPLWRRDGTGHYLCNACGL 107
            C N       L      G  +C  CGL
Sbjct: 13  TCPNHP--DAILVEDYRAGDMICPECGL 38


>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 58

 Score = 25.8 bits (57), Expect = 0.55
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 8/29 (27%)

Query: 80  ECVNCGAISTPLWRRDGTGHYLCNACGLY 108
           EC  C              H++C  CG Y
Sbjct: 31  ECPQCHGKKLS--------HHICPNCGYY 51


>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
           N-terminal domain {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 50

 Score = 24.3 bits (53), Expect = 1.5
 Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)

Query: 79  RECVNCGAISTPLWRRDGTGHYLCNACGL 107
           + C  C   S  L      G  +C  CG 
Sbjct: 6   KVCPACE--SAELIYDPERGEIVCAKCGY 32


>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
           initiation factor 2 beta {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 37

 Score = 23.8 bits (52), Expect = 2.2
 Identities = 8/27 (29%), Positives = 9/27 (33%)

Query: 80  ECVNCGAISTPLWRRDGTGHYLCNACG 106
            C  C    T + R        C ACG
Sbjct: 3   ICHECNRPDTRIIREGRISLLKCEACG 29


>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation
           factor 2 beta {Archaeon Methanococcus jannaschii [TaxId:
           2190]}
          Length = 36

 Score = 23.5 bits (51), Expect = 2.2
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 81  CVNCGAISTPLWRRDGTGHYLCNACG 106
           C  CG   T + +        C ACG
Sbjct: 3   CRECGKPDTKIIKEGRVHLLKCMACG 28


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta, AccD {Escherichia coli [TaxId:
           562]}
          Length = 263

 Score = 24.8 bits (53), Expect = 4.6
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 10/54 (18%)

Query: 81  CVNCGAISTPLWRRD-GTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFN 133
           C +CG +   L+R +      +C  C  + +M   NR           D G+  
Sbjct: 5   CDSCGQV---LYRAELERNLEVCPKCDHHMRMTARNR------LHSLLDEGSLV 49


>d1n7va_ b.126.1.1 (A:) Adsorption protein p2 {Bacteriophage prd1
           [TaxId: 10658]}
          Length = 555

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 100 YLCNACGLYHKMNGMNR-PLVKQPRR 124
           ++ N CGL+    G+++  L++ PRR
Sbjct: 409 WVANNCGLFPMSGGLDKTTLLEIPRR 434


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.480 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,956
Number of extensions: 26282
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 17
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.6 bits)