BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12568
(114 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383853373|ref|XP_003702197.1| PREDICTED: probable exonuclease mut-7 homolog [Megachile rotundata]
Length = 938
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+ QSLS LV C G+ LNK DQFSNWE RPLR QI+YAALDA+CLL++Y VL QC R
Sbjct: 525 TKQSLSKLVELCLGQKLNKSDQFSNWEQRPLRSGQITYAALDAYCLLEIYGVLEKQCERL 584
Query: 70 GIELGPLLTEVL----SSHAVTTKKSTILYF 96
I + TE+ S TKK+T Y+
Sbjct: 585 DIPFLEICTEIQHIPHRSPKRNTKKATPNYY 615
>gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior]
Length = 955
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 52/81 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SLS LV CFG+ L+K DQFSNWE RPLR SQI YAALDA+CLL++Y VL D A I
Sbjct: 482 RSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCLLEIYNVLADYSADMAI 541
Query: 72 ELGPLLTEVLSSHAVTTKKST 92
+ E+ TK +T
Sbjct: 542 PFEDICAEIQHIPHAHTKTNT 562
>gi|345496472|ref|XP_001601894.2| PREDICTED: probable exonuclease mut-7 homolog [Nasonia vitripennis]
Length = 978
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 46/62 (74%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
++LS LV C G+ LNK DQFSNWE RPLR SQI YA+LDA+CLL+VY VL QC R GI
Sbjct: 533 ENLSKLVELCLGQRLNKSDQFSNWERRPLRESQILYASLDAYCLLEVYNVLAVQCDRLGI 592
Query: 72 EL 73
Sbjct: 593 PF 594
>gi|350396853|ref|XP_003484688.1| PREDICTED: probable exonuclease mut-7 homolog [Bombus impatiens]
Length = 942
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+ +Q + ++LS LV C G+ LNK DQFSNWE RPLR SQI YAALDA+CLL++Y L
Sbjct: 533 ESDEQFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIYATLE 592
Query: 64 DQCARQGIELGPLLTEV 80
QC I + +EV
Sbjct: 593 IQCEHLDIPFYDVCSEV 609
>gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus]
Length = 1053
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 50/71 (70%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+ +SLS LV CFG+ L+K DQFSNWE RPLR SQI YAALDA+CLL++Y+VL D A
Sbjct: 518 TSKSLSKLVELCFGQRLDKSDQFSNWELRPLRESQIIYAALDAYCLLEIYKVLADYSADM 577
Query: 70 GIELGPLLTEV 80
I + E+
Sbjct: 578 DIPFEDICAEI 588
>gi|340716154|ref|XP_003396566.1| PREDICTED: probable exonuclease mut-7 homolog [Bombus terrestris]
Length = 943
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 50/77 (64%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+ +Q + ++LS LV C G+ LNK DQFSNWE RPLR SQI YAALDA+CLL++Y L
Sbjct: 534 ESDEQFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIYATLE 593
Query: 64 DQCARQGIELGPLLTEV 80
QC I + EV
Sbjct: 594 IQCEHLDIPFYDVCLEV 610
>gi|270003369|gb|EEZ99816.1| hypothetical protein TcasGA2_TC002596 [Tribolium castaneum]
Length = 1249
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
QGS SL TLV +C G+ L+K DQFSNWE RPLR SQ+ YAALDA+CL++VY V+ C
Sbjct: 891 QGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIKGCCE 950
Query: 68 R 68
+
Sbjct: 951 K 951
>gi|91079648|ref|XP_968350.1| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium
castaneum]
Length = 1009
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
QGS SL TLV +C G+ L+K DQFSNWE RPLR SQ+ YAALDA+CL++VY V+ C
Sbjct: 753 QGSGPSLGTLVNQCLGRPLDKSDQFSNWEKRPLRNSQLVYAALDAYCLIEVYDVIKGCCE 812
Query: 68 R 68
+
Sbjct: 813 K 813
>gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera]
Length = 954
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 44/59 (74%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
Q + ++LS LV C G+ LNK DQFSNWE RPLR SQI YAALDA+CLL++Y L QC
Sbjct: 529 QFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIYATLEIQC 587
>gi|380016821|ref|XP_003692371.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog
[Apis florea]
Length = 938
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+ Q + ++LS LV C G+ LNK DQFSNWE RPLR SQI YAALDA+CLL++Y L
Sbjct: 509 ESDDQFTKKNLSKLVELCLGQKLNKSDQFSNWEQRPLRESQIIYAALDAYCLLEIYATLE 568
Query: 64 DQC 66
QC
Sbjct: 569 IQC 571
>gi|405964657|gb|EKC30115.1| Putative exonuclease mut-7-like protein [Crassostrea gigas]
Length = 737
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS LV +CFGK LNK +Q S+WE RPLR +QI YAALDAF LL+VY+ L + R+ +
Sbjct: 420 RGLSELVRQCFGKPLNKGEQMSDWERRPLRNTQIQYAALDAFVLLEVYERLKETAKREKM 479
Query: 72 EL 73
E+
Sbjct: 480 EI 481
>gi|242000324|ref|XP_002434805.1| conserved hypothetical protein [Ixodes scapularis]
gi|215498135|gb|EEC07629.1| conserved hypothetical protein [Ixodes scapularis]
Length = 492
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS L G LNK +Q S+WENRPLR SQ+ YAALDAFCLLQVY+ L + + +
Sbjct: 392 KGLSELTRTLLGLPLNKDEQCSDWENRPLRSSQMRYAALDAFCLLQVYEELFKRAEGEDM 451
Query: 72 ELGPLLTEVLSSHAVTTKK 90
L L+ EV S AV K
Sbjct: 452 NLRELIQEVRDSEAVRRDK 470
>gi|242022456|ref|XP_002431656.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212516964|gb|EEB18918.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 734
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
+L++ + C G+ L+K +QFS+WE RPLR SQI YAALDA+CLL+ Y V+ + Q +
Sbjct: 494 TLNSFIEFCLGEKLDKSNQFSDWEKRPLRHSQIVYAALDAYCLLEAYDVILKESKNQNFD 553
Query: 73 LGPLLTEVLSSHAVTTK 89
+ ++ +V+ + VT K
Sbjct: 554 ILNVIQDVIKNKIVTVK 570
>gi|345315003|ref|XP_001510635.2| PREDICTED: probable exonuclease mut-7 homolog, partial
[Ornithorhynchus anatinus]
Length = 846
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS LV + GK L+K +Q S+WE RPLRP+QI YAA DA+CLL+VY+ L D AR G+
Sbjct: 610 KGLSLLVQRVLGKPLDKAEQLSDWERRPLRPAQILYAASDAYCLLEVYRALCDDPARFGL 669
Query: 72 ELGPLLTEVLSSHAVTTKKSTI 93
+ L EV+ + V I
Sbjct: 670 SVD--LREVVKLNTVARGPRLI 689
>gi|390337135|ref|XP_003724496.1| PREDICTED: probable exonuclease mut-7 homolog [Strongylocentrotus
purpuratus]
Length = 457
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L+ LV CFGK L+K+D+ S+WE RPLR +Q+ YAALDAFCLL+VY L ++ + G++
Sbjct: 23 GLTDLVHYCFGKYLDKRDRISDWERRPLRQAQMIYAALDAFCLLEVYAYLKEKVSYHGLQ 82
Query: 73 L 73
+
Sbjct: 83 I 83
>gi|357610676|gb|EHJ67090.1| hypothetical protein KGM_03049 [Danaus plexippus]
Length = 839
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SLS+LV CFG L K +Q SNWE RPLR +QI YAALDAF LL++Y+ L + C Q I
Sbjct: 517 NSLSSLVQTCFGLPLEKSEQCSNWELRPLRNTQIHYAALDAFVLLEIYKYLQNLCVEQHI 576
Query: 72 ELGPLLTEVL 81
+ +V+
Sbjct: 577 NFEEICNDVM 586
>gi|157110292|ref|XP_001651037.1| hypothetical protein AaeL_AAEL005527 [Aedes aegypti]
gi|122068562|sp|Q179T2.1|MUT7_AEDAE RecName: Full=Probable exonuclease mut-7 homolog; AltName:
Full=Exonuclease 3'-5' domain-containing protein 3
homolog
gi|108878761|gb|EAT42986.1| AAEL005527-PA [Aedes aegypti]
Length = 719
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
Q+L+ LV C GK L+K +QFSNW RPLR Q+ YAALDAFCLL++Y + Q I
Sbjct: 574 QNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTH--I 631
Query: 72 ELGPLLTEVLSS 83
+L P E+L++
Sbjct: 632 QLDP--NEILNA 641
>gi|346466963|gb|AEO33326.1| hypothetical protein [Amblyomma maculatum]
Length = 190
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ L+ L G LNK ++ SNWE RPLRPSQ YAALDA+CLLQ+Y+ L +C + +
Sbjct: 108 KGLAELTYSTLGLPLNKSERCSNWEKRPLRPSQTVYAALDAYCLLQIYEELKKRCEEEHL 167
Query: 72 ELGPLLTEVLSSHAVTTKKST 92
+ LL E + T+ T
Sbjct: 168 DFEMLLREAEETWTDMTRAKT 188
>gi|170051623|ref|XP_001861848.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872804|gb|EDS36187.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 925
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
Q+LS L C GK L+K +QFSNW RPLR QI YAALDA+ LLQ+Y V+ Q I
Sbjct: 569 QNLSNLSKLCLGKKLDKSNQFSNWAQRPLRREQIQYAALDAYVLLQIYDVIAKQLKAARI 628
Query: 72 ELGPLLTEVL 81
+L +L +L
Sbjct: 629 DLNEVLNGLL 638
>gi|427785563|gb|JAA58233.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 598
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 45/68 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS L G LNK +Q S+WENRPLR SQ+ YAALDAFCLLQ+Y+ L+ + Q I
Sbjct: 496 KGLSELTRTLLGLPLNKDEQCSDWENRPLRQSQMKYAALDAFCLLQLYEELYKRADAQQI 555
Query: 72 ELGPLLTE 79
L LL E
Sbjct: 556 NLRELLEE 563
>gi|427779777|gb|JAA55340.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 626
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 45/68 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS L G LNK +Q S+WENRPLR SQ+ YAALDAFCLLQ+Y+ L+ + Q I
Sbjct: 524 KGLSELTRTLLGLPLNKDEQCSDWENRPLRQSQMKYAALDAFCLLQLYEELYKRADAQQI 583
Query: 72 ELGPLLTE 79
L LL E
Sbjct: 584 NLRELLEE 591
>gi|291224294|ref|XP_002732140.1| PREDICTED: Probable exonuclease mut-7 homolog [Saccoglossus
kowalevskii]
Length = 1166
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 73
LS LV +C GK LNK ++ S+WE RPLR +Q+ YAALDA+CLL+VY + ++ G+++
Sbjct: 600 LSELVQRCLGKPLNKMERLSDWERRPLRQAQLIYAALDAYCLLEVYDHIRNKVKESGLDI 659
Query: 74 G 74
Sbjct: 660 N 660
>gi|346467133|gb|AEO33411.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ L+ L G LNK ++ S+WE RPLRPSQ YAALDA+CLLQ+Y+ L +C + +
Sbjct: 108 KGLAELTHLMLGLPLNKNERCSDWEKRPLRPSQTVYAALDAYCLLQIYEELVKRCEEEHL 167
Query: 72 ELGPLLTEVLSS 83
+ G LL E S
Sbjct: 168 DFGMLLQEAEES 179
>gi|301627207|ref|XP_002942768.1| PREDICTED: probable exonuclease mut-7 homolog [Xenopus (Silurana)
tropicalis]
Length = 654
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 10 SPQS---LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
+PQS LS LV GK L+K +Q SNW+ RPLR QI YAA DA+CLL+VY VL
Sbjct: 429 APQSEKGLSLLVRDILGKPLDKTEQLSNWDKRPLREQQILYAAADAYCLLEVYDVLRQDP 488
Query: 67 ARQGI 71
AR G+
Sbjct: 489 ARFGL 493
>gi|346466965|gb|AEO33327.1| hypothetical protein [Amblyomma maculatum]
Length = 182
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
+ L+ L G LNK ++ SNWENRPLRPSQ YAALDA+CLLQ+Y+ L +C
Sbjct: 108 KGLAELTYSTLGLPLNKSERCSNWENRPLRPSQTVYAALDAYCLLQIYEELKKRC 162
>gi|260802943|ref|XP_002596351.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
gi|229281606|gb|EEN52363.1| hypothetical protein BRAFLDRAFT_215559 [Branchiostoma floridae]
Length = 503
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+ S + LS LV +C G L K +Q S+WE RPLR +QI YA+LDA+CLL+VY VL
Sbjct: 157 EASAKSDAHGLSQLVQQCLGLPLAKTEQLSDWERRPLRKAQILYASLDAYCLLEVYDVLT 216
Query: 64 DQCARQGIEL 73
+ GI +
Sbjct: 217 KRVKDAGIAI 226
>gi|198438094|ref|XP_002131917.1| PREDICTED: similar to MUTator family member (mut-7) [Ciona
intestinalis]
Length = 921
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 1 MLTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
M D + LS L L+ G+ L+K +Q S+WE RPLR +Q++YAALDAFCLL++Y
Sbjct: 493 MENDADELCKHSGLSKLALQTLGQALDKSEQISDWERRPLRVTQVTYAALDAFCLLEIYD 552
Query: 61 VL 62
VL
Sbjct: 553 VL 554
>gi|195443106|ref|XP_002069280.1| GK21051 [Drosophila willistoni]
gi|194165365|gb|EDW80266.1| GK21051 [Drosophila willistoni]
Length = 587
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
++L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ VY +L D+
Sbjct: 500 EALTDLTLLCLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLVYNILIDR 553
>gi|334312267|ref|XP_001374708.2| PREDICTED: probable exonuclease mut-7 homolog [Monodelphis
domestica]
Length = 1091
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS LV GK L+K++Q SNWE RPLR QI YAA DA+CLL+VY+VL A G+
Sbjct: 553 KGLSLLVQNLLGKPLDKREQLSNWEKRPLREEQILYAASDAYCLLEVYEVLCKDPANFGL 612
>gi|326671072|ref|XP_003199355.1| PREDICTED: probable exonuclease mut-7 homolog [Danio rerio]
Length = 847
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 6 SQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
S+ + + LS LV + GK LNK +Q SNWE RPLR SQ+ YAA DA+CLL +Y +L
Sbjct: 578 SEGPAEKGLSLLVQQVLGKPLNKSEQLSNWERRPLRTSQLRYAAADAYCLLDIYLIL 634
>gi|410926767|ref|XP_003976844.1| PREDICTED: probable exonuclease mut-7 homolog [Takifugu rubripes]
Length = 898
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS LV + G+ L+K++Q SNW+ RPLR SQI YA DA+CLL+VY VL A G+
Sbjct: 493 KGLSLLVQQVLGRPLDKREQMSNWKKRPLRASQIRYAVADAYCLLEVYTVLKSNPAHFGL 552
>gi|194226096|ref|XP_001492084.2| PREDICTED: probable exonuclease mut-7 homolog [Equus caballus]
Length = 870
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
P+ LS LV + GK L+K+ Q SNW+ RPL +Q+ YAA DA+CLL+VY+VL
Sbjct: 518 GPRGLSLLVQQVLGKPLDKRQQLSNWDRRPLSEAQLVYAATDAYCLLEVYRVL 570
>gi|395506589|ref|XP_003757614.1| PREDICTED: probable exonuclease mut-7 homolog, partial [Sarcophilus
harrisii]
Length = 752
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 5 ESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+S + + + LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL+VY++L
Sbjct: 384 KSPRQAEKGLSLLVQNLLGKPLDKTEQLSNWEKRPLREEQILYAASDAYCLLEVYEMLCK 443
Query: 65 QCARQGI 71
A G+
Sbjct: 444 DPAHFGL 450
>gi|320165604|gb|EFW42503.1| hypothetical protein CAOG_07346 [Capsaspora owczarzaki ATCC 30864]
Length = 1153
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L+ LV KTL+K+ Q S+WE RPLRP+Q+ YAALDAFCLL+++ ++
Sbjct: 834 LAGLVRAVLKKTLDKRQQMSDWERRPLRPAQVHYAALDAFCLLKLHDLM 882
>gi|348513863|ref|XP_003444460.1| PREDICTED: probable exonuclease mut-7 homolog [Oreochromis
niloticus]
Length = 864
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS LV + G+ L+K +Q SNWE RPLR SQI YA DA+CLL+VY V+ A G+
Sbjct: 495 KGLSLLVQQVLGRPLDKTEQMSNWEKRPLRISQIRYAVADAYCLLEVYSVVSRNPASFGL 554
>gi|326930167|ref|XP_003211223.1| PREDICTED: probable exonuclease mut-7 homolog [Meleagris gallopavo]
Length = 916
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
DE + + LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL+VY+ L
Sbjct: 518 DEGLRQPEKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKL 576
>gi|195475951|ref|XP_002090246.1| GE12998 [Drosophila yakuba]
gi|194176347|gb|EDW89958.1| GE12998 [Drosophila yakuba]
Length = 625
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAMDARCLLLIYNTL 597
>gi|194878428|ref|XP_001974061.1| GG21519 [Drosophila erecta]
gi|190657248|gb|EDV54461.1| GG21519 [Drosophila erecta]
Length = 625
Score = 65.5 bits (158), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAMDARCLLLIYNTL 597
>gi|391336495|ref|XP_003742615.1| PREDICTED: probable exonuclease mut-7 homolog [Metaseiulus
occidentalis]
Length = 629
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LS L + G L+K +Q S+WENRPLRPSQ+ YAALDA CL++ + L +C + I+
Sbjct: 497 GLSRLTCRLLGYPLDKSEQCSDWENRPLRPSQVHYAALDAHCLIRCWDELARRCGDEDIK 556
>gi|125987467|ref|XP_001357496.1| GA21642 [Drosophila pseudoobscura pseudoobscura]
gi|54645828|gb|EAL34566.1| GA21642 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+LS L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 546 ALSDLSLVCLGKKLNKSNQCSNWANRPLRRDQILYAAIDARCLMLIYNTL 595
>gi|195352042|ref|XP_002042524.1| GM23271 [Drosophila sechellia]
gi|194124393|gb|EDW46436.1| GM23271 [Drosophila sechellia]
Length = 625
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLLLIYNTL 597
>gi|195580608|ref|XP_002080127.1| GD21649 [Drosophila simulans]
gi|194192136|gb|EDX05712.1| GD21649 [Drosophila simulans]
Length = 422
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 345 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLLLIYNTL 394
>gi|195051841|ref|XP_001993181.1| GH13217 [Drosophila grimshawi]
gi|193900240|gb|EDV99106.1| GH13217 [Drosophila grimshawi]
Length = 632
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L + C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 554 ALTDLTMLCLGKKLNKANQCSNWANRPLRREQILYAAIDARCLLHIYDCL 603
>gi|195155440|ref|XP_002018612.1| GL25861 [Drosophila persimilis]
gi|194114765|gb|EDW36808.1| GL25861 [Drosophila persimilis]
Length = 625
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+LS L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 546 ALSDLSLVCLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 595
>gi|449675992|ref|XP_002154256.2| PREDICTED: probable exonuclease mut-7 homolog [Hydra
magnipapillata]
Length = 610
Score = 64.3 bits (155), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+ LS L+ + G++L+K Q S+W+ RPL +QI YAALDAFCLL+VY+VL+
Sbjct: 495 KGLSLLIYRLLGQSLDKTFQVSDWDKRPLSTNQIQYAALDAFCLLEVYKVLN 546
>gi|21428342|gb|AAM49831.1| GM01690p [Drosophila melanogaster]
Length = 625
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 597
>gi|20129683|ref|NP_610094.1| nibbler [Drosophila melanogaster]
gi|75027007|sp|Q9VIF1.1|MUT7_DROME RecName: Full=Probable exonuclease mut-7 homolog; AltName:
Full=Exonuclease 3'-5' domain-containing protein 3
homolog
gi|7298759|gb|AAF53970.1| nibbler [Drosophila melanogaster]
gi|356461056|gb|AET07634.1| RE72821p1 [Drosophila melanogaster]
Length = 625
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 597
>gi|335281300|ref|XP_003122404.2| PREDICTED: probable exonuclease mut-7 homolog [Sus scrofa]
Length = 1150
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY L + AR
Sbjct: 796 GPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEEQLVYAAADAYCLLEVYWALCREPAR 854
>gi|359070742|ref|XP_002691738.2| PREDICTED: probable exonuclease mut-7 homolog [Bos taurus]
Length = 1026
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY L + AR
Sbjct: 570 GPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVYWALCREPAR 628
>gi|449477771|ref|XP_002190738.2| PREDICTED: probable exonuclease mut-7 homolog [Taeniopygia guttata]
Length = 837
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL++Y+ L
Sbjct: 521 KGLSLLVQHVLGKPLDKTEQLSNWEKRPLREEQILYAASDAYCLLEIYERL 571
>gi|363740369|ref|XP_415556.3| PREDICTED: probable exonuclease mut-7 homolog [Gallus gallus]
Length = 999
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL+VY+ L
Sbjct: 526 KGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKL 576
>gi|440894519|gb|ELR46950.1| Putative exonuclease mut-7-like protein, partial [Bos grunniens
mutus]
Length = 855
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY L + AR
Sbjct: 508 GPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVYWALCREPAR 566
>gi|449283146|gb|EMC89845.1| putative exonuclease mut-7 like protein [Columba livia]
Length = 730
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL++Y+ L
Sbjct: 485 KGLSLLVQHVLGKPLDKTEQLSNWEKRPLREEQILYAASDAYCLLEIYEKL 535
>gi|358422031|ref|XP_001788105.2| PREDICTED: probable exonuclease mut-7 homolog [Bos taurus]
Length = 952
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY L + AR
Sbjct: 570 GPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVYWALCREPAR 628
>gi|167516320|ref|XP_001742501.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779125|gb|EDQ92739.1| predicted protein [Monosiga brevicollis MX1]
Length = 880
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L T+V G+TL+K++Q SNW+ RPLRP Q YAA+DA+CL +Y+ L
Sbjct: 799 GLGTVVAAVLGQTLDKRNQCSNWDRRPLRPDQAEYAAIDAWCLAPLYEQL 848
>gi|195401270|ref|XP_002059237.1| GJ16284 [Drosophila virilis]
gi|194156111|gb|EDW71295.1| GJ16284 [Drosophila virilis]
Length = 621
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L + C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 543 ALTDLSMLCLGKKLNKANQCSNWANRPLRREQILYAAIDARCLLLIYDCL 592
>gi|195114732|ref|XP_002001921.1| GI14516 [Drosophila mojavensis]
gi|193912496|gb|EDW11363.1| GI14516 [Drosophila mojavensis]
Length = 625
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L + C GK LNK +Q SNW NRPLR QI YAA+DA CLL +Y L
Sbjct: 547 ALTDLSMLCLGKKLNKTNQCSNWANRPLRREQILYAAIDARCLLLIYACL 596
>gi|194759149|ref|XP_001961812.1| GF15154 [Drosophila ananassae]
gi|190615509|gb|EDV31033.1| GF15154 [Drosophila ananassae]
Length = 627
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
+LS L C GK LNK +Q SNW NRPLR QI YAA+DA CL +++ L +
Sbjct: 550 ALSDLSFLCLGKKLNKSNQCSNWTNRPLRHEQIIYAAIDARCLFLIFKTLQARI------ 603
Query: 73 LGPLLTEVLSSHAVTT 88
P+L +V+ T
Sbjct: 604 --PMLNKVIEKSIATN 617
>gi|326432840|gb|EGD78410.1| hypothetical protein PTSG_09106 [Salpingoeca sp. ATCC 50818]
Length = 1063
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
++G P SLS + FG+ LNK +Q SNWE RPLR Q+ YAA+DA+CL+ +Y
Sbjct: 1003 KKGQP-SLSLACERVFGRPLNKMEQCSNWERRPLRRDQLEYAAIDAWCLIGIY 1054
>gi|324504376|gb|ADY41890.1| Exonuclease mut-7, partial [Ascaris suum]
Length = 953
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 3 TDESQQGSPQ---SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
TDES Q L+ L + G+ L+K++Q NW RPLRP Q+ YAA+DA+CL+++Y
Sbjct: 565 TDESPSDEQQLHFKLTDLCYRILGEPLDKREQIGNWAMRPLRPEQMKYAAMDAYCLIKIY 624
>gi|390458575|ref|XP_002743563.2| PREDICTED: probable exonuclease mut-7 homolog [Callithrix jacchus]
Length = 846
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 6 SQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
++ G + LS LV + G TL+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L +
Sbjct: 529 ARAGGLRGLSLLVQQVLGTTLDKTQQLSNWDRRPLFEEQLIYAAADAYCLLEVHQALCRE 588
Query: 66 CAR 68
AR
Sbjct: 589 PAR 591
>gi|410979605|ref|XP_003996172.1| PREDICTED: probable exonuclease mut-7 homolog [Felis catus]
Length = 973
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L+ + A
Sbjct: 625 RGLSLLVQQVLGKPLDKTQQLSNWDRRPLSEGQLVYAAADAYCLLEVHQALNREPA 680
>gi|281345331|gb|EFB20915.1| hypothetical protein PANDA_015792 [Ailuropoda melanoleuca]
Length = 723
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL VYQ L
Sbjct: 485 RGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVYAAADAYCLLGVYQAL 535
>gi|301781518|ref|XP_002926188.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog
[Ailuropoda melanoleuca]
Length = 849
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL VYQ L
Sbjct: 524 RGLSLLVQQVLGKPLDKSQQLSNWDRRPLSEGQLVYAAADAYCLLGVYQAL 574
>gi|345806145|ref|XP_003435395.1| PREDICTED: probable exonuclease mut-7 homolog [Canis lupus
familiaris]
Length = 921
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS LV + G+ L+K Q SNW+ RPL Q+ YAA DA+CLL+VYQ L
Sbjct: 511 RGLSLLVQQVLGRPLDKAQQLSNWDRRPLSEEQLVYAAADAYCLLEVYQTL 561
>gi|348677647|gb|EGZ17464.1| hypothetical protein PHYSODRAFT_351203 [Phytophthora sojae]
Length = 406
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR- 68
+P SL LV + L K Q SNWE RPL SQ+ YAA DA L+ +Y L + ++
Sbjct: 155 NPLSLQKLVFFYLHRKLAKTQQMSNWERRPLTASQLHYAAADALVLIHLYDELLMRISKK 214
Query: 69 -QGIELGPLLTEVLSSHAVTTKKSTILYFSTVSGLDTKEHRQLC 111
QG EL +T VL + T K ++ + + + K+HR++C
Sbjct: 215 QQGFELSE-VTNVLDINLPRTPKCSLCFEVFDTAAELKKHRKIC 257
>gi|167535101|ref|XP_001749225.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772378|gb|EDQ86031.1| predicted protein [Monosiga brevicollis MX1]
Length = 411
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 4 DESQQGSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
D+ Q SP+ SL+ LV G +L K +Q ++WE RPLRP + YAALDA+ LLQV +L
Sbjct: 332 DKWQGSSPRISLADLVQGLVGVSLAKHEQLADWERRPLRPESLHYAALDAYVLLQVLDIL 391
>gi|119608788|gb|EAW88382.1| hypothetical protein FLJ20433, isoform CRA_b [Homo sapiens]
Length = 390
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 196 RGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCREPAR 252
>gi|21753501|dbj|BAC04356.1| unnamed protein product [Homo sapiens]
Length = 758
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCREPAR 572
>gi|16549645|dbj|BAB70838.1| unnamed protein product [Homo sapiens]
Length = 599
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 239 RGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCREPAR 295
>gi|119608789|gb|EAW88383.1| hypothetical protein FLJ20433, isoform CRA_c [Homo sapiens]
Length = 876
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCREPAR 572
>gi|346465417|gb|AEO32553.1| hypothetical protein [Amblyomma maculatum]
Length = 181
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS L G LNK + SNWE R LRPSQI D++CLLQ+Y+ L D+C + +
Sbjct: 108 KGLSELTYLTLGLPLNKSQRCSNWEKRSLRPSQI---VQDSYCLLQIYEELKDRCEEEHL 164
Query: 72 ELGPLLTEV 80
G LL E
Sbjct: 165 GFGMLLREA 173
>gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
Length = 1313
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
P LS LV GK L+K + S+W RPL SQ+ YAALDA+ L++V++ L + G
Sbjct: 506 PVGLSALVAAVLGKPLDKMMRMSDWSRRPLTQSQMEYAALDAWTLVEVHRTLLEA---HG 562
Query: 71 IELGPLLTEVLSSHAVTTKKSTILYFSTVSG 101
PLL V S+ T T T G
Sbjct: 563 AHYSPLLERVRKSYDYTRYARTASSMHTNGG 593
>gi|403301404|ref|XP_003941380.1| PREDICTED: probable exonuclease mut-7 homolog [Saimiri boliviensis
boliviensis]
Length = 874
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LS LV + G TL+K Q SNW+ RPL ++ YAA DA+CLL+V+Q L + AR
Sbjct: 513 GGLRGLSLLVQQVLGTTLDKTQQLSNWDRRPLCEEKLIYAAADAYCLLEVHQALCREPAR 572
>gi|321455674|gb|EFX66801.1| hypothetical protein DAPPUDRAFT_331718 [Daphnia pulex]
Length = 224
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 27 NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLSSH 84
+K++QFS+W+ RPLR SQ YAALDAFCLL+VY L + I+ +L ++ + H
Sbjct: 156 DKKEQFSDWQKRPLRTSQFIYAALDAFCLLEVYDYLQKRSQFLEIDWRGVLEKLGTVH 213
>gi|356550873|ref|XP_003543807.1| PREDICTED: probable exonuclease mut-7 homolog [Glycine max]
Length = 506
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SLST+ + G +L+K+ Q S+W +RPL QI+YAA+DA CLL +++V + ++G
Sbjct: 142 KSLSTICAEVLGFSLSKELQCSDWSHRPLTEEQITYAAMDAHCLLDIFEVFQAKVVKEG 200
>gi|145279204|ref|NP_060290.3| probable exonuclease mut-7 homolog [Homo sapiens]
gi|308153580|sp|Q8N9H8.3|MUT7_HUMAN RecName: Full=Probable exonuclease mut-7 homolog; AltName:
Full=Exonuclease 3'-5' domain-containing protein 3
Length = 876
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPAR 572
>gi|22759879|dbj|BAC10986.1| HBE269 [Homo sapiens]
Length = 514
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ L+ LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 196 RGLTLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCREPAR 252
>gi|308502918|ref|XP_003113643.1| hypothetical protein CRE_26057 [Caenorhabditis remanei]
gi|308263602|gb|EFP07555.1| hypothetical protein CRE_26057 [Caenorhabditis remanei]
Length = 752
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
D QQ + LS + K G+ L+K +Q S W+ RPLR Q+ YAA+DA+C+L +Y
Sbjct: 661 DGKQQFLNKGLSYICEKLLGRPLDKTEQCSVWDRRPLRHLQLRYAAMDAYCMLMLYDKCK 720
Query: 64 DQCARQGIELGPLLTE 79
D A+ G ++ L +
Sbjct: 721 DVFAKLGYDVREFLAK 736
>gi|441623909|ref|XP_003279887.2| PREDICTED: probable exonuclease mut-7 homolog [Nomascus leucogenys]
Length = 788
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 484 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQLIYAAADAYCLLEVHQALCREPAR 540
>gi|397492286|ref|XP_003817058.1| PREDICTED: probable exonuclease mut-7 homolog [Pan paniscus]
Length = 878
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCQEQVIYAAADAYCLLEVHQALCREPAR 572
>gi|428172826|gb|EKX41732.1| hypothetical protein GUITHDRAFT_112147 [Guillardia theta CCMP2712]
Length = 1559
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
S SL V C GK L+K+ Q S+WE RPL Q+ YAALDA CLL V+
Sbjct: 878 SGNSLKKTVQACLGKDLDKRMQISDWEARPLSEEQVQYAALDAHCLLSVF 927
>gi|268533174|ref|XP_002631715.1| Hypothetical protein CBG20916 [Caenorhabditis briggsae]
Length = 714
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
QQ + LS L K GK L+K +Q S W+ RPLR Q+ YAA+DA+C+L +Y +
Sbjct: 626 QQLMNKGLSYLCEKFLGKPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLMLYDKCSEVF 685
Query: 67 ARQGIELGPLL 77
++ G E+ L
Sbjct: 686 SKMGFEVKEFL 696
>gi|170596587|ref|XP_001902821.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158589271|gb|EDP28335.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 704
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS L + GK L+K +Q S W+ RPLR Q+ YAALDA+C+L +Y+ D +R
Sbjct: 622 RGLSALCERVLGKPLDKTEQCSVWDRRPLRDLQLRYAALDAYCMLMLYEKCVDWASR 678
>gi|393907978|gb|EJD74851.1| 3'-5' exonuclease [Loa loa]
Length = 728
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+ LS L + GK L+K +Q S W+ RPLR Q+ YAALDA+C+L +Y+ D +R +
Sbjct: 646 RGLSALCKRVLGKPLDKTEQCSVWDRRPLRDLQLRYAALDAYCMLMLYEKCVDWASRLDL 705
Query: 72 ELGPLLTE 79
+ + ++
Sbjct: 706 NINEICSK 713
>gi|357436407|ref|XP_003588479.1| hypothetical protein MTR_1g007660 [Medicago truncatula]
gi|355477527|gb|AES58730.1| hypothetical protein MTR_1g007660 [Medicago truncatula]
Length = 512
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SLST+ + G TL+K+ Q S+W RPL Q++YAA+DA CLL +++V A++G
Sbjct: 152 KSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIFKVFQATVAKEG 210
>gi|348677929|gb|EGZ17746.1| hypothetical protein PHYSODRAFT_560259 [Phytophthora sojae]
Length = 1489
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGP 75
T + + G L+K Q S+WE RPL P Q++YAALDA+CLL + + ++ E P
Sbjct: 1000 TYIKQALGYPLSKLQQKSDWERRPLTPQQVAYAALDAYCLLMLQDAVANKHPGTSQETSP 1059
Query: 76 LLTEVLSSHAVTTK 89
+SS A +
Sbjct: 1060 PFVRSMSSPATPAQ 1073
>gi|145546781|ref|XP_001459073.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426896|emb|CAK91676.1| unnamed protein product [Paramecium tetraurelia]
Length = 403
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 2 LTDESQQGSPQSLST-LVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQ 57
L++ QQ PQ T L +C GK L+K +Q SNW+ RPLR +QI YAALDA+ L
Sbjct: 337 LSELFQQKFPQEKKTNLSFQCSKLLGKELDKVEQISNWQRRPLRNAQIHYAALDAYICLH 396
Query: 58 VYQV 61
+Y +
Sbjct: 397 LYNL 400
>gi|221057512|ref|XP_002261264.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|194247269|emb|CAQ40669.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 738
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+SL+ L + GK LNKQ Q SNW RPL SQI YAA DA+ L+ + Q+L
Sbjct: 656 KSLNHLCQQILGKKLNKQLQLSNWSRRPLMESQICYAATDAYVLIVLEQLL 706
>gi|170590466|ref|XP_001899993.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158592625|gb|EDP31223.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 331
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
L+ L K G+ L+K +Q NW RPLR Q+ YAA+D +CLL +Y L + R
Sbjct: 196 LTDLCRKVLGQALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLNLYNKLKIRAER 250
>gi|145521320|ref|XP_001446515.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413993|emb|CAK79118.1| unnamed protein product [Paramecium tetraurelia]
Length = 513
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 QGSPQ--SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+G P+ SL+ + F K L+K D SNWE RPLR +QI YAALDA LQV+Q + ++
Sbjct: 439 EGDPKLRSLAYISEFYFKKKLSKYDTCSNWEYRPLRKAQIHYAALDAIASLQVFQTMKEK 498
>gi|402586210|gb|EJW80148.1| hypothetical protein WUBG_08943, partial [Wuchereria bancrofti]
Length = 483
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
L+ L K G+ L+K +Q NW RPLR Q+ YAA+D +CLL +Y L + R
Sbjct: 120 LTDLCQKVLGQALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLNLYNKLKIRAER 174
>gi|341888494|gb|EGT44429.1| hypothetical protein CAEBREN_01896 [Caenorhabditis brenneri]
Length = 728
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
QQ + LS L K G+ L+K +Q S W+ RPLR Q+ YAA+DA+C+L +Y+ +
Sbjct: 640 QQFLNKGLSFLCEKLLGRPLDKTEQCSVWDRRPLRNLQLRYAAMDAYCMLLLYEKCDEVF 699
Query: 67 ARQG 70
R G
Sbjct: 700 KRMG 703
>gi|255075999|ref|XP_002501674.1| predicted protein [Micromonas sp. RCC299]
gi|226516938|gb|ACO62932.1| predicted protein [Micromonas sp. RCC299]
Length = 725
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L + Q+ LS L GK L+K + S+W RPL P Q++YAALDA+ L+++ +
Sbjct: 645 LKEHYQRKHLVGLSHLTAAVLGKPLDKATRMSDWSKRPLTPRQVTYAALDAWVLVELMRT 704
Query: 62 LHDQCARQGIELGPLLTEV 80
L + A + L LT V
Sbjct: 705 LRENHAEELERLAGGLTHV 723
>gi|389584428|dbj|GAB67160.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 734
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+SLS L K GK LNK+ Q SNW RPL SQI YAA DA+ L+ + ++L
Sbjct: 652 KSLSHLCQKFLGKNLNKKLQLSNWSRRPLMESQIHYAATDAYVLIVLERLL 702
>gi|224135103|ref|XP_002321984.1| predicted protein [Populus trichocarpa]
gi|222868980|gb|EEF06111.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + G +L+K+ Q S+W +RPL Q +YAA DA CLL+++ V D ++G
Sbjct: 157 KSLATICKEVLGISLSKELQCSDWSHRPLTEEQKTYAAADAHCLLKIFNVFQDNIVKKG 215
>gi|17537593|ref|NP_496590.1| Protein Y57A10A.13 [Caenorhabditis elegans]
gi|6782292|emb|CAB55016.2| Protein Y57A10A.13 [Caenorhabditis elegans]
Length = 710
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
QQ + LS + K G+ L+K +Q S W+ RPLR Q+ YAA+DA+C+L +Y+
Sbjct: 622 QQFLNKGLSFICEKLLGRPLDKTEQCSVWDRRPLRCLQLRYAAMDAYCMLLLYEKCATIF 681
Query: 67 ARQGIELGPLLTE 79
A+ GI + +++
Sbjct: 682 AKLGINVNDFVSK 694
>gi|449456993|ref|XP_004146233.1| PREDICTED: probable exonuclease mut-7 homolog [Cucumis sativus]
gi|449522385|ref|XP_004168207.1| PREDICTED: probable exonuclease mut-7 homolog [Cucumis sativus]
Length = 524
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+ + + G +L+K+ Q S+W RPL QI+YAA+DA CLL+++ V + + ++G
Sbjct: 161 KSLTAICSEVLGFSLSKELQCSDWSVRPLTEEQIAYAAMDAHCLLEIFNVFYSKVLKEG 219
>gi|255549190|ref|XP_002515649.1| 3-5 exonuclease, putative [Ricinus communis]
gi|223545192|gb|EEF46701.1| 3-5 exonuclease, putative [Ricinus communis]
Length = 523
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL+T+ + G +L+K+ Q S+W +RPL Q +YAA+DA CLL+++ V +++G
Sbjct: 159 KSLATICNEVLGISLSKELQCSDWSHRPLTEEQKAYAAIDAHCLLEIFNVFRANVSKEG- 217
Query: 72 ELGPLLTEVLSSHAVTTKKSTIL 94
E + E+ SS+ ++ IL
Sbjct: 218 EFYNNVMELQSSNIISHGLKEIL 240
>gi|356554607|ref|XP_003545636.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog
[Glycine max]
Length = 499
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SLST+ + G +L+K+ Q S+W RPL QI+YAA+DA CLL +++V + ++
Sbjct: 141 KSLSTICTEVLGFSLSKELQCSDWSYRPLTEEQITYAAMDAHCLLDIFEVFQTKFVKKAF 200
>gi|357441841|ref|XP_003591198.1| hypothetical protein MTR_1g083820 [Medicago truncatula]
gi|355480246|gb|AES61449.1| hypothetical protein MTR_1g083820 [Medicago truncatula]
Length = 553
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G LNK + S+WE RPL P+Q+ YAALDA L+ +++ L DQ
Sbjct: 478 LAKLAEKILGAGLNKTRRNSDWEQRPLTPNQLEYAALDAVVLVHIFRQLPDQ 529
>gi|301095852|ref|XP_002897025.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108454|gb|EEY66506.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 414
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+P SL LV L K Q SNW RPL PSQ+ YAA DA L+ +Y L + +Q
Sbjct: 152 NPLSLQKLVFFYLHHKLTKTQQMSNWARRPLTPSQLHYAAADALVLIHLYDELLMRIQKQ 211
Query: 70 GIELGPLLTE---VLSSHAVTTKKSTILYFSTVSGLDTKEHRQLCL 112
L+E VL + + K ++ + + + K+HR+ CL
Sbjct: 212 RTTKKFRLSEVTNVLDVNLPPSPKCSLCFDVFETSKELKKHRKTCL 257
>gi|357441845|ref|XP_003591200.1| hypothetical protein MTR_1g083820 [Medicago truncatula]
gi|355480248|gb|AES61451.1| hypothetical protein MTR_1g083820 [Medicago truncatula]
Length = 519
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G LNK + S+WE RPL P+Q+ YAALDA L+ +++ L DQ
Sbjct: 444 LAKLAEKILGAGLNKTRRNSDWEQRPLTPNQLEYAALDAVVLVHIFRQLPDQ 495
>gi|302810633|ref|XP_002987007.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii]
gi|300145172|gb|EFJ11850.1| hypothetical protein SELMODRAFT_425875 [Selaginella moellendorffii]
Length = 797
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
G SLS + FG+ L K Q S+WE RPL QISYAA DA CLL + LH
Sbjct: 151 GDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALH 205
>gi|156101427|ref|XP_001616407.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148805281|gb|EDL46680.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 752
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+SLS L K GK LNKQ Q SNW RPL SQI YAA DA+ L+ + ++L
Sbjct: 670 KSLSHLCQKFLGKNLNKQLQLSNWSRRPLMESQIHYAATDAYVLIVLERLL 720
>gi|302807740|ref|XP_002985564.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii]
gi|300146770|gb|EFJ13438.1| hypothetical protein SELMODRAFT_122415 [Selaginella moellendorffii]
Length = 442
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 32/55 (58%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
G SLS + FG+ L K Q S+WE RPL QISYAA DA CLL + LH
Sbjct: 151 GDTPSLSHICRDVFGRPLCKSLQCSDWELRPLTEEQISYAAADAHCLLAILDALH 205
>gi|156380461|ref|XP_001631787.1| predicted protein [Nematostella vectensis]
gi|156218833|gb|EDO39724.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
P+SL + G+ L+K+ Q SNW+ L P Q++YAA DA+ L+VYQ + R G
Sbjct: 281 PRSLQAMCAIFLGEHLSKRHQQSNWKKSDLSPGQVAYAATDAWVSLRVYQEMKRHGERLG 340
Query: 71 IELGP 75
+++ P
Sbjct: 341 VDMMP 345
>gi|312068949|ref|XP_003137453.1| hypothetical protein LOAG_01867 [Loa loa]
Length = 911
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
++DE+ L +VL G+ L+K +Q NW RPLR Q+ YAA+D +CLL +Y
Sbjct: 543 VSDETVHFRLTDLCQMVL---GEALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLDLYDK 599
Query: 62 LHDQCARQ 69
L + R+
Sbjct: 600 LKIRAERE 607
>gi|348687564|gb|EGZ27378.1| hypothetical protein PHYSODRAFT_553959 [Phytophthora sojae]
Length = 588
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 3 TDESQQGSPQSLSTLVLKCFGKT-----LNKQDQFSNWENRPLRPSQISYAALDAFCLLQ 57
TDE Q +P S L L +T L+K+ + S+WE RPL P+Q+ YAALDA L+Q
Sbjct: 504 TDE--QDAPAKSSRLGLTAIAETYLGLPLDKRARMSDWERRPLTPAQLQYAALDAHVLVQ 561
Query: 58 VYQVLHDQ 65
+Y + +Q
Sbjct: 562 IYYKMQEQ 569
>gi|393911852|gb|EFO26611.2| hypothetical protein LOAG_01867 [Loa loa]
Length = 925
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
++DE+ L +VL G+ L+K +Q NW RPLR Q+ YAA+D +CLL +Y
Sbjct: 557 VSDETVHFRLTDLCQMVL---GEALDKTEQIGNWAMRPLRREQMKYAAMDGYCLLDLYDK 613
Query: 62 LHDQCARQ 69
L + R+
Sbjct: 614 LKIRAERE 621
>gi|356576837|ref|XP_003556536.1| PREDICTED: uncharacterized protein LOC100797818 [Glycine max]
Length = 571
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G +LNK + SNWE RPL P+Q+ YAALDA L+ ++ L Q
Sbjct: 481 GLAGLAEKILGASLNKTRRNSNWEQRPLTPNQLEYAALDAVVLVHIFHHLPGQ 533
>gi|359490814|ref|XP_002271858.2| PREDICTED: probable exonuclease mut-7 homolog [Vitis vinifera]
Length = 513
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+++ + G +L+K+ Q S+W +RPL Q +YAA DA CLL+++ + H + A +G
Sbjct: 153 KSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIFNIFHFKVAEKG 211
>gi|388502398|gb|AFK39265.1| unknown [Medicago truncatula]
Length = 553
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G LNK + S+WE RPL P+Q+ YAALDA L+ ++ L DQ
Sbjct: 478 LAKLAEKILGAGLNKTRRNSDWEQRPLTPNQLEYAALDAVVLVHIFPQLPDQ 529
>gi|302143936|emb|CBI23041.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+++ + G +L+K+ Q S+W +RPL Q +YAA DA CLL+++ + H + A +G
Sbjct: 153 KSLASICKELLGISLSKELQCSDWSHRPLTEEQKTYAATDAHCLLEIFNIFHFKVAEKG 211
>gi|17557121|ref|NP_499104.1| Protein ZK1098.3 [Caenorhabditis elegans]
gi|732219|sp|P34603.2|YO63_CAEEL RecName: Full=Uncharacterized protein ZK1098.3
gi|3881492|emb|CAA80141.1| Protein ZK1098.3 [Caenorhabditis elegans]
Length = 784
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 73
LS L G ++K +Q NW+ RPLR +QI YA +DA + +V+Q + + + ++
Sbjct: 567 LSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEVVRKHELDA 626
Query: 74 GPLLTEVLSSHAVTTKKSTI 93
LL E SH +T KK +
Sbjct: 627 EKLLVE---SHMITVKKEKV 643
>gi|301091688|ref|XP_002896023.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095658|gb|EEY53710.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 575
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
D S S L+ + G L+K+ + SNWE RPL +Q+ YAALDA L+Q+Y +
Sbjct: 495 DASANSSRLGLAAIAATYLGLPLDKRARMSNWERRPLTQAQLHYAALDAHVLVQIYYKMQ 554
Query: 64 DQ 65
+Q
Sbjct: 555 EQ 556
>gi|403357653|gb|EJY78455.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 678
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L+ + K FGK + K++Q SNWE RPLR SQ Y ALDAF L+ + L
Sbjct: 465 LAKVSEKVFGKPICKREQMSNWERRPLRLSQQHYGALDAFILVDLINKL 513
>gi|449435970|ref|XP_004135767.1| PREDICTED: uncharacterized protein LOC101205010 [Cucumis sativus]
Length = 580
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
LS L K G LNK + S+WE RPL +Q+ YAALDA L+ ++Q + DQ
Sbjct: 482 GLSGLAQKVLGAGLNKTRRNSDWEQRPLTVNQLEYAALDAVVLVHIFQHVRDQ 534
>gi|449520229|ref|XP_004167136.1| PREDICTED: uncharacterized LOC101205010 [Cucumis sativus]
Length = 580
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
LS L K G LNK + S+WE RPL +Q+ YAALDA L+ ++Q + DQ
Sbjct: 482 GLSGLAQKVLGAGLNKTRRNSDWEQRPLTVNQLEYAALDAVVLVHIFQHVRDQ 534
>gi|118361377|ref|XP_001013917.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89295684|gb|EAR93672.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1490
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL +V K ++K +Q SNW+ RPLR SQI YAA+DAF ++++Y+ L
Sbjct: 505 SLKFMVQKLLNLQMSKFEQISNWDRRPLRKSQIHYAAVDAFIVIKLYEKL 554
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL + + + ++K +Q S+W RPLR QI YAALDA L +Y+
Sbjct: 1232 SLKQMCYQILKQKISKYEQISDWSKRPLRKCQIHYAALDALLPLMLYE 1279
>gi|356535024|ref|XP_003536049.1| PREDICTED: uncharacterized protein LOC100788595 [Glycine max]
Length = 566
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L+ L K G +LNK + SNWE RPL P Q+ YAALDA L+ +++ L
Sbjct: 482 LAGLTEKILGASLNKTRRNSNWEQRPLTPHQLEYAALDAVVLVHIFRHL 530
>gi|145550275|ref|XP_001460816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428647|emb|CAK93419.1| unnamed protein product [Paramecium tetraurelia]
Length = 720
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL+ V + FGK L+K++ FSNW+ RPLR Q+ Y A+DA+ + +Y L+
Sbjct: 456 SLANQVYQLFGKKLSKKECFSNWQRRPLRKCQLHYGAMDAYICIALYLKLN 506
>gi|86158027|ref|YP_464812.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774538|gb|ABC81375.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-C]
Length = 294
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LS LV FG L+K Q S+W RPL P Q++YAALD LL ++ +L + A +G
Sbjct: 124 GLSALVESHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELAARG 181
>gi|197122666|ref|YP_002134617.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
gi|196172515|gb|ACG73488.1| 3'-5' exonuclease [Anaeromyxobacter sp. K]
Length = 288
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P LS LV FG L+K Q S+W RPL P Q++YAALD LL ++ +L + A
Sbjct: 115 GRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYAALDTHFLLPLFDLLTGELA 174
Query: 68 RQG 70
+G
Sbjct: 175 TRG 177
>gi|407974482|ref|ZP_11155391.1| ribonuclease D [Nitratireductor indicus C115]
gi|407430171|gb|EKF42846.1| ribonuclease D [Nitratireductor indicus C115]
Length = 392
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G ++K +F++W RPL Q+SYAA D L+ VY+ L ++ R
Sbjct: 112 GDSVSYDQLVSKITGAHIDKSSRFTDWRRRPLTDKQLSYAAADVTHLIDVYKHLREELQR 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|374585390|ref|ZP_09658482.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
gi|373874251|gb|EHQ06245.1| 3'-5' exonuclease [Leptonema illini DSM 21528]
Length = 377
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL LV + G L K++Q SNW RPL SQ+ YA LD L Q+ Q + ++ R G+
Sbjct: 117 SLLALVQRYVGVELEKKEQKSNWMKRPLTKSQLDYAHLDTVYLYQIMQQMKEELERAGV 175
>gi|224123698|ref|XP_002330186.1| predicted protein [Populus trichocarpa]
gi|222871642|gb|EEF08773.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LS L K G LNK + SNWE RPL +Q+ YAALDA L+ ++ H+ G
Sbjct: 480 GLSGLAEKILGTGLNKTRRNSNWELRPLGHNQLEYAALDAAVLVHIFHHFHNHSQSAGFP 539
Query: 73 LG 74
G
Sbjct: 540 DG 541
>gi|325186923|emb|CCA21467.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 1069
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ LS L G L K+ Q S+WE RPL +QI YAALDA+ LL +Y+ L +
Sbjct: 1012 RGLSDLAKSSLGFPLCKRMQRSDWEQRPLSSAQIEYAALDAYVLLMIYERLRE 1064
>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
Length = 399
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+LV G L K D F++W RPL SQISYAA D L Q+Y + D+ R G
Sbjct: 135 SLVSAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLG 189
>gi|307544648|ref|YP_003897127.1| ribonuclease D [Halomonas elongata DSM 2581]
gi|307216672|emb|CBV41942.1| ribonuclease D [Halomonas elongata DSM 2581]
Length = 395
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
G+TL K + SNW RPL +Q +YAALD LL+V+QV D R G
Sbjct: 148 GETLPKDETRSNWLERPLSETQTTYAALDVIYLLEVWQVQRDALERYG 195
>gi|303277603|ref|XP_003058095.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460752|gb|EEH58046.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 891
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 58
TL+K++Q SNW+ RPLR SQI+YAALDA LL++
Sbjct: 854 TLDKREQRSNWDRRPLRGSQIAYAALDAEVLLRL 887
>gi|429740976|ref|ZP_19274645.1| 3'-5' exonuclease [Porphyromonas catoniae F0037]
gi|429159645|gb|EKY02142.1| 3'-5' exonuclease [Porphyromonas catoniae F0037]
Length = 254
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
F + ++K + SNWE++ L P+QI YAALDA+ L++YQ L
Sbjct: 200 FAERMSKAQRMSNWEDKVLSPAQIHYAALDAWASLRIYQTL 240
>gi|348687566|gb|EGZ27380.1| hypothetical protein PHYSODRAFT_321189 [Phytophthora sojae]
Length = 337
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+ LS + G L+K+ + S+WE RPL +Q+ YAALDA LLQ+Y + +Q
Sbjct: 265 EGLSAVAETYLGLPLDKRVRMSDWEGRPLTRAQLHYAALDAHVLLQIYDKMQEQ 318
>gi|395786188|ref|ZP_10465915.1| ribonuclease D [Bartonella tamiae Th239]
gi|423716919|ref|ZP_17691109.1| ribonuclease D [Bartonella tamiae Th307]
gi|395422486|gb|EJF88682.1| ribonuclease D [Bartonella tamiae Th239]
gi|395428993|gb|EJF95068.1| ribonuclease D [Bartonella tamiae Th307]
Length = 386
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S +V + G T++K +F++W RPL +Q+SYA D L QVY+VL+++ +
Sbjct: 112 GETISYDQIVNRITGDTIDKTSRFTDWSARPLSENQLSYALADVTYLRQVYRVLNEELEK 171
Query: 69 QG 70
+G
Sbjct: 172 KG 173
>gi|296536446|ref|ZP_06898543.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
gi|296263225|gb|EFH09753.1| ribonuclease D [Roseomonas cervicalis ATCC 49957]
Length = 394
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S +LV G ++K +FS+W RPL P+QI+YAA D L +VY L ++ +
Sbjct: 123 GDQASYDSLVRALAGAQIDKAHRFSDWAARPLSPAQINYAAADVTHLRRVYTALVERLTQ 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|293334477|ref|NP_001168997.1| uncharacterized protein LOC100382828 [Zea mays]
gi|223974363|gb|ACN31369.1| unknown [Zea mays]
Length = 98
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G LS L + G LNK + SNWE RPL +Q YAALDA L+ ++ H+
Sbjct: 10 KGVTGGLSGLSKEILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIF---HEHMR 66
Query: 68 RQ 69
RQ
Sbjct: 67 RQ 68
>gi|307103312|gb|EFN51573.1| hypothetical protein CHLNCDRAFT_140064 [Chlorella variabilis]
Length = 969
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY----QVLHDQCAR 68
SLS L GK L+K Q S+W RPL Q+ YAALDA + ++ Q+ H R
Sbjct: 544 SLSVLAQSVLGKPLDKSQQVSDWGRRPLSSQQLEYAALDAHAAVLIFRGMGQLHHPYRTR 603
Query: 69 QGIEL 73
QG+ L
Sbjct: 604 QGLAL 608
>gi|220917449|ref|YP_002492753.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955303|gb|ACL65687.1| 3'-5' exonuclease [Anaeromyxobacter dehalogenans 2CP-1]
Length = 288
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P LS LV FG L+K Q S+W RPL P Q++YA+LD LL ++ +L + A
Sbjct: 115 GRPGLGLSALVEAHFGVRLSKAFQRSDWGRRPLTPDQLAYASLDTHFLLPLFDLLTGELA 174
Query: 68 RQG 70
+G
Sbjct: 175 TRG 177
>gi|68074623|ref|XP_679228.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499925|emb|CAH95040.1| conserved hypothetical protein [Plasmodium berghei]
Length = 661
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+SL+ L + K L+K+ Q SNW RPL QI YA LDA+ L+ + + L D+
Sbjct: 578 KSLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGLDAYVLIPIEEKLIDE 631
>gi|296117272|ref|ZP_06835863.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
gi|295976165|gb|EFG82952.1| ribonuclease D [Gluconacetobacter hansenii ATCC 23769]
Length = 421
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G ++K +FS+W RPL +QI YAA D L +VYQ L Q R
Sbjct: 144 GDQVGYDSLVASVVGAQIDKSHRFSDWAARPLSAAQIEYAAADVTYLREVYQRLVAQLDR 203
Query: 69 QG 70
+G
Sbjct: 204 EG 205
>gi|145352962|ref|XP_001420802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581037|gb|ABO99095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+++V + G L+K+ Q SNW+ RPL +QI+YAALDA +VL D +R GI
Sbjct: 61 NSLASIVSETLGYALDKRCQRSNWDARPLAQAQITYAALDA-------EVLLDIASRLGI 113
Query: 72 ELG 74
G
Sbjct: 114 IAG 116
>gi|374335828|ref|YP_005092515.1| ribonuclease D [Oceanimonas sp. GK1]
gi|372985515|gb|AEY01765.1| ribonuclease D [Oceanimonas sp. GK1]
Length = 366
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ + LV + G +L+K ++W RPL +Q+SYAA D L +YQ LH+Q A+
Sbjct: 111 GAQLGFAPLVEQLLGVSLDKAHARTDWLARPLSAAQLSYAADDVIYLYPLYQQLHEQLAQ 170
Query: 69 QGI 71
+G+
Sbjct: 171 KGL 173
>gi|255542852|ref|XP_002512489.1| 3-5 exonuclease, putative [Ricinus communis]
gi|223548450|gb|EEF49941.1| 3-5 exonuclease, putative [Ricinus communis]
Length = 570
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LS L K G LNK + SNWE RPL Q+ YAALDA L+ ++ + + I
Sbjct: 476 GLSGLAKKLLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAVVLIHIFHHIRNHSEPADIS 535
Query: 73 LG 74
G
Sbjct: 536 EG 537
>gi|82793580|ref|XP_728099.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23484273|gb|EAA19664.1| Streptococcus pyogenes AMV256, putative [Plasmodium yoelii yoelii]
Length = 713
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+SL+ L + K L+K+ Q SNW RPL QI YA LDA+ L+ + + L D+
Sbjct: 630 KSLNDLCFQFLRKKLSKKLQLSNWNKRPLSKEQIEYAGLDAYVLIPIEEKLIDE 683
>gi|303272145|ref|XP_003055434.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463408|gb|EEH60686.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 590
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
L+TL G TL+K +Q S+W RPL +Q+SYAA DAF L V+ D+C
Sbjct: 239 LATLTKFTLGATLSKAEQCSDWSRRPLTAAQLSYAAADAFYLC----VIFDKC 287
>gi|383457201|ref|YP_005371190.1| ATP-dependent helicase [Corallococcus coralloides DSM 2259]
gi|380733211|gb|AFE09213.1| ATP-dependent helicase [Corallococcus coralloides DSM 2259]
Length = 917
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL+ + + G L+K Q SNW RPL Q+SYAALDA LL +Y D
Sbjct: 854 HSLAMVCERELGIVLDKSSQTSNWSRRPLEADQLSYAALDAEILLALYDRFKD 906
>gi|145525585|ref|XP_001448609.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416164|emb|CAK81212.1| unnamed protein product [Paramecium tetraurelia]
Length = 498
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 20 KCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
+ GK L+K +Q S+W+ RPLR +QI YAALDA L +Y
Sbjct: 454 RLLGKELDKVEQISHWQKRPLRSAQIHYAALDAIICLHLY 493
>gi|115463391|ref|NP_001055295.1| Os05g0357100 [Oryza sativa Japonica Group]
gi|55168078|gb|AAV43946.1| unknown protein [Oryza sativa Japonica Group]
gi|113578846|dbj|BAF17209.1| Os05g0357100 [Oryza sativa Japonica Group]
gi|215716995|dbj|BAG95358.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196622|gb|EEC79049.1| hypothetical protein OsI_19612 [Oryza sativa Indica Group]
gi|222631262|gb|EEE63394.1| hypothetical protein OsJ_18206 [Oryza sativa Japonica Group]
Length = 580
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+G+ LS L K G LNK + SNWE RPL +Q YAALDA L+ ++ + Q
Sbjct: 493 KGTTGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQ 550
>gi|167536930|ref|XP_001750135.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771297|gb|EDQ84965.1| predicted protein [Monosiga brevicollis MX1]
Length = 1125
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL +L FG+ LNK D+ S+W RPL Q+ YAALDA+ +++ + L
Sbjct: 569 SLGSLTATVFGRHLNKVDRMSDWSQRPLTKRQLHYAALDAWICVKLLERL 618
>gi|433775810|ref|YP_007306277.1| ribonuclease D [Mesorhizobium australicum WSM2073]
gi|433667825|gb|AGB46901.1| ribonuclease D [Mesorhizobium australicum WSM2073]
Length = 383
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L+ + AR
Sbjct: 112 GDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELAR 171
Query: 69 Q 69
+
Sbjct: 172 E 172
>gi|308501869|ref|XP_003113119.1| CRE-MUT-7 protein [Caenorhabditis remanei]
gi|308265420|gb|EFP09373.1| CRE-MUT-7 protein [Caenorhabditis remanei]
Length = 943
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L G+TL+K +Q SNW++RPLR +Q+ YAALDA ++ ++
Sbjct: 567 LADLTQSLLGQTLDKTEQCSNWQSRPLRKNQLLYAALDAVVVVLTFE 613
>gi|242087595|ref|XP_002439630.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
gi|241944915|gb|EES18060.1| hypothetical protein SORBIDRAFT_09g017250 [Sorghum bicolor]
Length = 562
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G LS L + G LNK + SNWE RPL +Q YAALDA L+ ++ H+
Sbjct: 474 KGVTGGLSGLSKEILGAGLNKSRRNSNWEQRPLTQNQKEYAALDAVVLVHIF---HEHMR 530
Query: 68 RQG 70
RQ
Sbjct: 531 RQA 533
>gi|337269427|ref|YP_004613482.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
gi|336029737|gb|AEH89388.1| ribonuclease D [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L+ + AR
Sbjct: 112 GDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLNAELAR 171
Query: 69 Q 69
+
Sbjct: 172 E 172
>gi|255089332|ref|XP_002506588.1| predicted protein [Micromonas sp. RCC299]
gi|226521860|gb|ACO67846.1| predicted protein [Micromonas sp. RCC299]
Length = 1038
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 5 ESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ Q+ + L+TLV G ++K +Q S+WE RPL Q+ YAA DA V VL D
Sbjct: 731 DKQKLTRVGLATLVASVLGAYVDKTEQCSDWERRPLTTDQVDYAAADA----HVLTVLFD 786
Query: 65 QC 66
+C
Sbjct: 787 RC 788
>gi|412985693|emb|CCO19139.1| predicted protein [Bathycoccus prasinos]
Length = 686
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 1 MLTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
+L E + P LS L K L+K + S+W +RPL SQ +YAALDA L+ +Q
Sbjct: 619 LLEKELNRHQPIGLSNLCSVLLSKPLDKSVRMSDWSSRPLSESQTAYAALDAQVLVDCHQ 678
Query: 61 VL 62
+L
Sbjct: 679 IL 680
>gi|390364698|ref|XP_798576.3| PREDICTED: probable exonuclease mut-7 homolog [Strongylocentrotus
purpuratus]
Length = 207
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
L+ LV CFGK L+K+D+ S+WE RPL +Q++YA ++ V+ L Q + G+
Sbjct: 111 LTDLVHFCFGKNLDKRDRMSDWEKRPLSQAQMTYAGINEEA---VWNRLQQQISALGV 165
>gi|440802927|gb|ELR23842.1| hypothetical protein ACA1_123200 [Acanthamoeba castellanii str.
Neff]
Length = 236
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
L++L + G+ L K SNW NR L P Q+SYAA DAF L VY L
Sbjct: 12 LASLAQELLGQRLAKGKARSNWANRQLTPEQLSYAATDAFATLLVYNELE 61
>gi|294084191|ref|YP_003550949.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663764|gb|ADE38865.1| ribonuclease D [Candidatus Puniceispirillum marinum IMCC1322]
Length = 409
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +LV GK ++K +F++W RPL QISYA D L Q+Y ++ D+ A
Sbjct: 138 HGDQIGYDSLVKSILGKNVDKTSRFTDWSKRPLTDRQISYALDDVIYLAQIYPIMLDKIA 197
Query: 68 RQ 69
+
Sbjct: 198 SE 199
>gi|349700964|ref|ZP_08902593.1| ribonuclease D [Gluconacetobacter europaeus LMG 18494]
Length = 395
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G ++K +FS+W RPL P+QI YAA D L VY+ L Q R
Sbjct: 123 GDQVGYDNLVSSLLGVQIDKSHRFSDWAARPLSPAQIGYAAADVTYLRLVYEKLLVQLER 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|349687992|ref|ZP_08899134.1| ribonuclease D [Gluconacetobacter oboediens 174Bp2]
Length = 395
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G ++K +FS+W RPL P+QI YAA D L VY+ L Q R
Sbjct: 123 GDQVGYDNLVSSLLGVQIDKSHRFSDWAARPLSPAQIGYAAADVTYLRLVYEKLLVQLER 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|115471903|ref|NP_001059550.1| Os07g0452400 [Oryza sativa Japonica Group]
gi|113611086|dbj|BAF21464.1| Os07g0452400 [Oryza sativa Japonica Group]
Length = 501
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + G L+K+ Q S+W RPL QI YAA DA+ LL ++ + H + +G
Sbjct: 181 KSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEG 239
>gi|125558189|gb|EAZ03725.1| hypothetical protein OsI_25856 [Oryza sativa Indica Group]
Length = 501
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + G L+K+ Q S+W RPL QI YAA DA+ LL ++ + H + +G
Sbjct: 181 KSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEG 239
>gi|162146523|ref|YP_001600982.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209543478|ref|YP_002275707.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|342179222|sp|A9H9B7.1|RND_GLUDA RecName: Full=Ribonuclease D; Short=RNase D
gi|161785098|emb|CAP54642.1| putative Ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
gi|209531155|gb|ACI51092.1| ribonuclease D [Gluconacetobacter diazotrophicus PAl 5]
Length = 393
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G ++K +FS+W RPL +QI+YAA D L VYQ+L ++ R
Sbjct: 123 GDQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLER 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|34394896|dbj|BAC84412.1| unknown protein [Oryza sativa Japonica Group]
Length = 501
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + G L+K+ Q S+W RPL QI YAA DA+ LL ++ + H + +G
Sbjct: 181 KSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEG 239
>gi|390451812|ref|ZP_10237379.1| ribonuclease D [Nitratireductor aquibiodomus RA22]
gi|389660595|gb|EIM72266.1| ribonuclease D [Nitratireductor aquibiodomus RA22]
Length = 392
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+SYA D L+ VYQ L + R
Sbjct: 112 GDSVSYDQLVSRITGARIDKSSRFTDWRRRPLSDKQLSYALADVTHLIDVYQHLKTELER 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|13476899|ref|NP_108468.1| ribonuclease D [Mesorhizobium loti MAFF303099]
gi|14027660|dbj|BAB53929.1| ribonuclease D [Mesorhizobium loti MAFF303099]
Length = 383
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L + AR
Sbjct: 112 GDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELAR 171
Query: 69 Q 69
+
Sbjct: 172 E 172
>gi|301100864|ref|XP_002899521.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103829|gb|EEY61881.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 1101
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 58
+ LST + + L+K Q S+WE RPL Q+ YAALDA+CLL +
Sbjct: 1048 KGLSTYIKQALELPLSKLQQKSDWERRPLTTQQVGYAALDAYCLLML 1094
>gi|342179228|sp|Q0BVP4.2|RND_GRABC RecName: Full=Ribonuclease D; Short=RNase D
Length = 395
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI YAA D L VY+ L D+ +
Sbjct: 123 GDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEK 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|297848138|ref|XP_002891950.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337792|gb|EFH68209.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 569
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
L+ L K G +LNK + S+WE RPL +Q+ YAALDA L+ +++ + D
Sbjct: 484 GLAGLTKKILGVSLNKTRRNSDWEQRPLTQNQLEYAALDAAVLIHIFRHVRD 535
>gi|225450638|ref|XP_002278277.1| PREDICTED: uncharacterized protein LOC100254615 [Vitis vinifera]
gi|296089752|emb|CBI39571.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
LS L K G LNK + SNWE RPL Q+ YAALDA L+ ++
Sbjct: 480 GLSGLAKKVLGAGLNKTRRNSNWEQRPLSQHQLEYAALDAAVLVHIF 526
>gi|313887168|ref|ZP_07820864.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
gi|332300419|ref|YP_004442340.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
gi|312923397|gb|EFR34210.1| 3'-5' exonuclease [Porphyromonas asaccharolytica PR426713P-I]
gi|332177482|gb|AEE13172.1| 3'-5' exonuclease [Porphyromonas asaccharolytica DSM 20707]
Length = 206
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
FG+ ++K+ Q +NWE L P+Q SYAALDA+ L++Y L +
Sbjct: 147 FGEKISKRAQLTNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190
>gi|119775068|ref|YP_927808.1| ribonuclease D [Shewanella amazonensis SB2B]
gi|119767568|gb|ABM00139.1| ribonuclease D [Shewanella amazonensis SB2B]
Length = 371
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 6 SQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
S G + LV +C G+TL+K + ++W RPL +Q+ YAA D F L Q+Y L +
Sbjct: 111 SGMGHGLGYAKLVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFYLYQLYPQLEQK 170
Query: 66 CARQG-----IELGPLLTE 79
G +E G LTE
Sbjct: 171 LKTLGRFDWVLEEGARLTE 189
>gi|145344201|ref|XP_001416625.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576851|gb|ABO94918.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 614
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+E + P LST+V GK L+K + S+W RPL Q YAALDA+ L++ ++ L
Sbjct: 534 EELSRYQPVGLSTMVAAVLGKPLDKTMRMSDWSKRPLTAQQRVYAALDAWTLVESHRSL 592
>gi|114326875|ref|YP_744031.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
gi|114315049|gb|ABI61109.1| ribonuclease D [Granulibacter bethesdensis CGDNIH1]
Length = 429
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI YAA D L VY+ L D+ +
Sbjct: 157 GDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEK 216
Query: 69 QG 70
+G
Sbjct: 217 EG 218
>gi|12321757|gb|AAG50917.1|AC069159_18 3'-5' exonuclease, putative [Arabidopsis thaliana]
Length = 582
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G +LNK + S+WE RPL +Q+ YAALDA L+ +++ + D
Sbjct: 498 LAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRHVRDH 549
>gi|334183377|ref|NP_176027.2| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
gi|332195255|gb|AEE33376.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
Length = 589
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L+ L K G +LNK + S+WE RPL +Q+ YAALDA L+ +++ + D
Sbjct: 484 LAGLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIFRHVRDH 535
>gi|402849302|ref|ZP_10897541.1| Ribonuclease D [Rhodovulum sp. PH10]
gi|402500432|gb|EJW12105.1| Ribonuclease D [Rhodovulum sp. PH10]
Length = 406
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W RPL P+QI YA D L VY L A+
Sbjct: 136 GDAISYDQLVQRVCGTNLDKSHRFTDWSRRPLTPAQIMYATSDVTHLRDVYVALSADLAK 195
Query: 69 QG 70
+G
Sbjct: 196 RG 197
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G++++K +FS+W RPL +QI+YAA D L VY L Q A
Sbjct: 122 GDQVGYDSLVGAITGRSIDKAHRFSDWSARPLSKAQIAYAATDVTHLRTVYDALRKQLAE 181
Query: 69 Q 69
Q
Sbjct: 182 Q 182
>gi|326435716|gb|EGD81286.1| hypothetical protein PTSG_11323 [Salpingoeca sp. ATCC 50818]
Length = 1526
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 11 PQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDA-FCLLQVYQVLHDQCA 67
P+S L LV K L+K +Q SNW RPL PSQ+ YAALDA C+ ++L
Sbjct: 737 PKSGGLKELVRHFMHKPLDKTEQMSNWNRRPLTPSQLHYAALDAHVCVSLAERMLQALAT 796
Query: 68 RQG 70
R G
Sbjct: 797 RTG 799
>gi|384244778|gb|EIE18276.1| hypothetical protein COCSUDRAFT_68365 [Coccomyxa subellipsoidea
C-169]
Length = 840
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
LS + C G+ L+K Q S W RPL Q++YAALDA + +Y L
Sbjct: 744 LSAMAEACLGRPLDKSMQMSRWNRRPLSERQLTYAALDALASVLIYDSL 792
>gi|145476719|ref|XP_001424382.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391446|emb|CAK56984.1| unnamed protein product [Paramecium tetraurelia]
Length = 510
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 26/38 (68%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
F K L+K D SNWE RPLR +Q YAALDA LQ+Y
Sbjct: 452 FKKKLSKFDTCSNWEYRPLRKAQAHYAALDAIISLQIY 489
>gi|340776383|ref|ZP_08696326.1| ribonuclease D [Acetobacter aceti NBRC 14818]
Length = 408
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G +++K +F++W RPL P+Q++YAA D L VY+ L Q R
Sbjct: 123 GDQVGYDNLVGAVTGASIDKSHRFTDWSVRPLSPAQLTYAAADVTYLRLVYESLLKQLER 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|299473101|emb|CBN77494.1| 3\'-5\' exonuclease family protein [Ectocarpus siliculosus]
Length = 192
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 6 SQQGSPQSLS--TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ QG P+ L L G++L+K+ Q S W RPL+ +Q++YAA DA L+V+ L
Sbjct: 112 NDQGIPRDLGLRKLASMYLGRSLSKRQQMSRWARRPLQSAQVNYAACDALVALRVFDAL 170
>gi|347760629|ref|YP_004868190.1| ribonuclease D [Gluconacetobacter xylinus NBRC 3288]
gi|347579599|dbj|BAK83820.1| ribonuclease D [Gluconacetobacter xylinus NBRC 3288]
Length = 395
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 31/63 (49%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G LV G ++K +FS+W RPL P+QI YAA D L VY L Q
Sbjct: 122 HGDQVGYDNLVWSLLGVQIDKSHRFSDWSARPLSPAQIGYAAADVTYLRLVYDKLLTQLQ 181
Query: 68 RQG 70
++G
Sbjct: 182 QEG 184
>gi|365858694|ref|ZP_09398611.1| ribonuclease D [Acetobacteraceae bacterium AT-5844]
gi|363713764|gb|EHL97341.1| ribonuclease D [Acetobacteraceae bacterium AT-5844]
Length = 394
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S +LV +++K +FS+W RPL P+QI+YAA D L +VY L ++ +
Sbjct: 123 GDQASYDSLVRGLANASIDKAHRFSDWAARPLSPAQIAYAAADVTHLRRVYTALVERLTQ 182
Query: 69 QG 70
G
Sbjct: 183 DG 184
>gi|357030453|ref|ZP_09092397.1| ribonuclease D [Gluconobacter morbifer G707]
gi|356415147|gb|EHH68790.1| ribonuclease D [Gluconobacter morbifer G707]
Length = 398
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G++++K +FS+W RPL +QI+YAA D L VY L Q
Sbjct: 124 GDQVGYDSLVGAITGRSIDKAHRFSDWAARPLTKAQIAYAAADVTHLRTVYLALRKQLEE 183
Query: 69 QG 70
QG
Sbjct: 184 QG 185
>gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479]
Length = 653
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 9 GSP--QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P L+ + G L+K +Q +W++ L SQ++YAALDA+ LL++Y V++
Sbjct: 189 GGPLKAGLAVVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLL 248
Query: 67 ARQGI 71
AR G+
Sbjct: 249 ARHGL 253
>gi|117928598|ref|YP_873149.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
gi|117649061|gb|ABK53163.1| 3'-5' exonuclease [Acidothermus cellulolyticus 11B]
Length = 416
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L+ +V + G LNK +W RPL S + YAALD L+++ ++LH +
Sbjct: 128 GYPRVGLAAMVEELLGFRLNKDHARVDWSRRPLPESWLRYAALDVEVLVELREILHTELQ 187
Query: 68 RQG 70
RQG
Sbjct: 188 RQG 190
>gi|341877604|gb|EGT33539.1| CBN-MUT-7 protein [Caenorhabditis brenneri]
Length = 862
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L L TL+K +Q SNW+ RPLR +QI YAALDA ++ ++
Sbjct: 549 LADLTLHFLNVTLDKTEQCSNWQCRPLRKNQIIYAALDAVVVVDTFR 595
>gi|357134047|ref|XP_003568631.1| PREDICTED: probable exonuclease mut-7 homolog [Brachypodium
distachyon]
Length = 523
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
LS L K G LNK + SNWE RPL +Q YAALDA L+ ++ + Q
Sbjct: 441 GLSGLSKKILGAGLNKTRRNSNWEKRPLSQNQKEYAALDAVVLVHIFHHVRGQ 493
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLS 82
L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ A++ LL E LS
Sbjct: 133 LSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELAKR-----KLLEEALS 184
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLS 82
L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ A++ LL E LS
Sbjct: 133 LSKKEQKSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELAKR-----KLLEEALS 184
>gi|441502165|ref|ZP_20984176.1| Ribonuclease D [Photobacterium sp. AK15]
gi|441429912|gb|ELR67363.1| Ribonuclease D [Photobacterium sp. AK15]
Length = 395
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G L+K + +NW RPL Q+ YAA D F LL +Y+ L++Q
Sbjct: 135 GVSAGFGTLVNDFLGIELDKGEARTNWLARPLTTKQLDYAAADVFYLLPLYEKLYEQVEA 194
Query: 69 QG 70
+G
Sbjct: 195 KG 196
>gi|307946769|ref|ZP_07662104.1| ribonuclease D [Roseibium sp. TrichSKD4]
gi|307770433|gb|EFO29659.1| ribonuclease D [Roseibium sp. TrichSKD4]
Length = 330
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G ++K +F++W RPL Q+ YA D L VYQ L A
Sbjct: 44 GDSISYDQLVYKVTGAQIDKSSRFTDWSRRPLTQKQLEYALADVTHLRDVYQFLKANLAE 103
Query: 69 QG 70
QG
Sbjct: 104 QG 105
>gi|384083552|ref|ZP_09994727.1| ribonuclease D [gamma proteobacterium HIMB30]
Length = 360
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SLS LV + GK L+K++ S+W RPL +Q YA D L +Y++L Q G
Sbjct: 117 SLSGLVAEVLGKELSKEETRSDWTKRPLSEAQCQYAKEDVLVLEPIYEILCQQLEEAG 174
>gi|328770378|gb|EGF80420.1| hypothetical protein BATDEDRAFT_88588 [Batrachochytrium
dendrobatidis JAM81]
Length = 715
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
LS LVL KTL+K+ + ++W RPLR Q++YAA D+ L+ +Y+
Sbjct: 663 LSDLVLVVLDKTLDKRVRLTDWNRRPLRQCQLTYAASDSDVLIDIYK 709
>gi|308501811|ref|XP_003113090.1| hypothetical protein CRE_25297 [Caenorhabditis remanei]
gi|308265391|gb|EFP09344.1| hypothetical protein CRE_25297 [Caenorhabditis remanei]
Length = 793
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD---QCARQG 70
L TLV + T++K +Q NW+ RPLR +QI YA+LDA +L +++ + + Q +Q
Sbjct: 570 LITLVEELLNLTMDKTEQTGNWQCRPLRKNQIVYASLDAVIVLDLFRKIFEIVKQYEKQ- 628
Query: 71 IELGPLLTEVLS 82
+E+ LL E S
Sbjct: 629 VEIDKLLDESRS 640
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + D+ ++ +
Sbjct: 98 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKDELIKRNL 156
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + D+ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKDELIKRNL 178
>gi|228471306|ref|ZP_04056112.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
gi|228306948|gb|EEK16046.1| 3- 5 exonuclease domain protein [Porphyromonas uenonis 60-3]
Length = 206
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
F + ++K+ Q SNWE L P+Q SYAALDA+ L++Y L +
Sbjct: 147 FAEKISKRAQLSNWEAATLTPAQQSYAALDAYACLRIYHRLESE 190
>gi|359790885|ref|ZP_09293762.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253146|gb|EHK56314.1| ribonuclease D, partial [Mesorhizobium alhagi CCNWXJ12-2]
Length = 355
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L Q R
Sbjct: 112 GDSVSYDQLVQRITGAHLDKSSRFTDWRHRPLSDKQLEYALADVTHLIEVYQHLKTQLER 171
>gi|284046840|ref|YP_003397180.1| ribonuclease D [Conexibacter woesei DSM 14684]
gi|283951061|gb|ADB53805.1| Ribonuclease D [Conexibacter woesei DSM 14684]
Length = 396
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ G+ + K ++ W+ RPL Q+SYAA D LLQ+ LHD+ +
Sbjct: 123 GAQTGYGNLLGAALGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSA 182
Query: 69 QG 70
G
Sbjct: 183 HG 184
>gi|71027523|ref|XP_763405.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350358|gb|EAN31122.1| hypothetical protein TP03_0385 [Theileria parva]
Length = 996
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
QSL+ L+ K F LNK+ Q S+W RPL + YA D+ L+ +Y L D+
Sbjct: 585 QSLAKLIQKYFNIKLNKRFQLSDWSKRPLDAEMLDYACCDSHYLIPLYSALKDE 638
>gi|268573488|ref|XP_002641721.1| C. briggsae CBR-MUT-7 protein [Caenorhabditis briggsae]
Length = 896
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L G+ L+K +Q SNW+ RPLR QI YAALDA ++ ++
Sbjct: 550 LADLTQYLLGQVLDKTEQCSNWQCRPLRKKQILYAALDAVVVVNTFK 596
>gi|357029287|ref|ZP_09091290.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
gi|355535902|gb|EHH05184.1| ribonuclease D [Mesorhizobium amorphae CCNWGS0123]
Length = 383
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L + R
Sbjct: 112 GDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELVR 171
Query: 69 Q 69
+
Sbjct: 172 E 172
>gi|407777000|ref|ZP_11124271.1| ribonuclease D [Nitratireductor pacificus pht-3B]
gi|407301165|gb|EKF20286.1| ribonuclease D [Nitratireductor pacificus pht-3B]
Length = 392
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+SYA D L+ VY L ++ R
Sbjct: 112 GDSISYDQLVSRITGAHIDKSSRFTDWRRRPLTDKQLSYALADVTHLIDVYAHLKEELTR 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|75906891|ref|YP_321187.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
gi|75700616|gb|ABA20292.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
Length = 302
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
QSL+TL+ C ++KQ+Q SNW RPL QI YA LD L Q+++ L D
Sbjct: 126 QSLATLL--CNFNNIDKQEQSSNWGRRPLSEEQIEYAYLDCIYLAQIHRRLLD 176
>gi|159464515|ref|XP_001690487.1| hypothetical protein CHLREDRAFT_169205 [Chlamydomonas
reinhardtii]
gi|158279987|gb|EDP05746.1| predicted protein [Chlamydomonas reinhardtii]
Length = 185
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
GK L+K+ Q S+W RPL SQ++YAA D CL+ V+ L
Sbjct: 36 LGKPLDKEQQRSDWAARPLSESQLAYAAADVACLVSVFDAL 76
>gi|156095069|ref|XP_001613570.1| DNA binding protein [Plasmodium vivax Sal-1]
gi|148802444|gb|EDL43843.1| DNA binding protein, putative [Plasmodium vivax]
Length = 481
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 30/54 (55%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
P SL LV K L KQ + SNW + LR QI YAA DA+ +VY VL D
Sbjct: 214 PPSLQFLVKLFLKKNLEKQFRLSNWLSDDLREEQILYAAADAYASREVYMVLRD 267
>gi|294944235|ref|XP_002784154.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239897188|gb|EER15950.1| 3-5 exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 368
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+P+SL L K L K ++ SNWE PL PSQ+ YAA DA+ QV + +
Sbjct: 176 TPRSLQGLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAM 228
>gi|299473129|emb|CBN78705.1| Similarity to ribonuclease D (RNase D) [Ectocarpus siliculosus]
Length = 1260
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 6 SQQGSPQ----SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
S +G P SLS L GK L+K +Q S+W NRPL Q YAALDA L V++
Sbjct: 791 SLRGKPADEKASLSRLCNVVLGKPLDKSEQCSDWGNRPLSGRQKRYAALDARATLLVHRE 850
Query: 62 LHDQCARQGIE 72
L + + +E
Sbjct: 851 LAPEVPPERME 861
>gi|118340523|gb|ABK80573.1| putative ribonuclease D [uncultured marine Nitrospinaceae
bacterium]
Length = 386
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ S + +V K GK ++K + +++W RPL SQI YA D L+ VY L ++ +
Sbjct: 110 GTQISFAKIVYKALGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKK 169
Query: 69 QG 70
G
Sbjct: 170 MG 171
>gi|431805515|ref|YP_007232416.1| ribonuclease D [Liberibacter crescens BT-1]
gi|430799490|gb|AGA64161.1| Ribonuclease D [Liberibacter crescens BT-1]
Length = 383
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
S TLV K G+ ++K +F+NW RPL Q+ YA D L ++Y +L
Sbjct: 116 SYDTLVRKLLGQQIDKSSRFTNWHQRPLSSKQLDYALADVTYLCEIYTIL 165
>gi|168037922|ref|XP_001771451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677178|gb|EDQ63651.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 565
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G SL+ + G L K Q SNWE RPL QI YAA D CLL ++ L
Sbjct: 180 GGTHSLTAISKAVLGHPLCKDAQCSNWEQRPLSQDQILYAAADTHCLLALFDTL 233
>gi|338983706|ref|ZP_08632871.1| Ribonuclease D [Acidiphilium sp. PM]
gi|338207356|gb|EGO95328.1| Ribonuclease D [Acidiphilium sp. PM]
Length = 392
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI+YAA D L VY+ L + R
Sbjct: 121 GDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTR 180
Query: 69 QG 70
+G
Sbjct: 181 EG 182
>gi|326404838|ref|YP_004284920.1| ribonuclease D [Acidiphilium multivorum AIU301]
gi|325051700|dbj|BAJ82038.1| ribonuclease D [Acidiphilium multivorum AIU301]
Length = 392
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI+YAA D L VY+ L + R
Sbjct: 121 GDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTR 180
Query: 69 QG 70
+G
Sbjct: 181 EG 182
>gi|148261351|ref|YP_001235478.1| ribonuclease D [Acidiphilium cryptum JF-5]
gi|342179221|sp|A5G127.1|RND_ACICJ RecName: Full=Ribonuclease D; Short=RNase D
gi|146403032|gb|ABQ31559.1| ribonuclease D [Acidiphilium cryptum JF-5]
Length = 392
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI+YAA D L VY+ L + R
Sbjct: 121 GDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTR 180
Query: 69 QG 70
+G
Sbjct: 181 EG 182
>gi|319784197|ref|YP_004143673.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170085|gb|ADV13623.1| ribonuclease D [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 383
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L+K +F++W +RPL Q+ YA D L++VYQ L + R
Sbjct: 112 GDSVSYDQLVQRITGARLDKSSRFTDWRHRPLSDKQLDYALADVTHLIEVYQHLSAELER 171
Query: 69 Q 69
+
Sbjct: 172 E 172
>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
Length = 384
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G L+K +F++W RPL P Q+ YA D L VYQ L +
Sbjct: 112 GDSISYVNLVKKTTGADLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDK 171
Query: 69 QG 70
G
Sbjct: 172 TG 173
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ SL+ L+ C G T NKQ Q ++W RPL I YA D LL VY L ++
Sbjct: 340 GLPRYSLAFLLSYCCGVTANKQYQLADWRIRPLPEDMIKYAREDTHYLLYVYDRLRNELI 399
Query: 68 RQGIELGPLLTEVLSS 83
R+ L+ VL +
Sbjct: 400 RRSNSQSNLINAVLKN 415
>gi|299472524|emb|CBN77309.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 648
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
S SLS GK L+K + S W+ RPL Q+ YAALDA CL+ +++
Sbjct: 551 STPSLSKTCEAWLGKPLDKTECASKWDVRPLTADQVRYAALDAHCLVGIFE 601
>gi|118582016|ref|YP_903266.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
gi|118504726|gb|ABL01209.1| 3'-5' exonuclease [Pelobacter propionicus DSM 2379]
Length = 382
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ FG LNK+ Q ++W RPL P +YA D LL++Y +L D+ +G
Sbjct: 125 LAALLKARFGIELNKKYQKADWSKRPLSPEMRAYAVADTADLLRLYDMLRDELLEKG 181
>gi|449137949|ref|ZP_21773255.1| ribonuclease D [Rhodopirellula europaea 6C]
gi|448883406|gb|EMB13933.1| ribonuclease D [Rhodopirellula europaea 6C]
Length = 404
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
P SL+TLV K G+TL K + +NW +RPL Q++YA D L +++ L
Sbjct: 120 PASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKL 171
>gi|62289703|ref|YP_221496.1| RND, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148560669|ref|YP_001258731.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163843022|ref|YP_001627426.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189023953|ref|YP_001934721.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225627251|ref|ZP_03785288.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237815192|ref|ZP_04594190.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|256369183|ref|YP_003106691.1| ribonuclease D [Brucella microti CCM 4915]
gi|260545541|ref|ZP_05821282.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260757729|ref|ZP_05870077.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260761554|ref|ZP_05873897.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260883537|ref|ZP_05895151.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|261213756|ref|ZP_05928037.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|261218885|ref|ZP_05933166.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261314491|ref|ZP_05953688.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261317409|ref|ZP_05956606.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261321616|ref|ZP_05960813.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261324867|ref|ZP_05964064.1| ribonuclease D [Brucella neotomae 5K33]
gi|261752075|ref|ZP_05995784.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|261757962|ref|ZP_06001671.1| ribonuclease D [Brucella sp. F5/99]
gi|265988446|ref|ZP_06101003.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297248110|ref|ZP_06931828.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340790381|ref|YP_004755846.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|376273517|ref|YP_005152095.1| ribonuclease D [Brucella abortus A13334]
gi|423167117|ref|ZP_17153820.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|423170507|ref|ZP_17157182.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|423173412|ref|ZP_17160083.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|423177302|ref|ZP_17163948.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|423179938|ref|ZP_17166579.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|423183070|ref|ZP_17169707.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|423185988|ref|ZP_17172602.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
gi|423189128|ref|ZP_17175738.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|62195835|gb|AAX74135.1| Rnd, ribonuclease D [Brucella abortus bv. 1 str. 9-941]
gi|148371926|gb|ABQ61905.1| ribonuclease D [Brucella ovis ATCC 25840]
gi|163673745|gb|ABY37856.1| ribonuclease D [Brucella suis ATCC 23445]
gi|189019525|gb|ACD72247.1| Rnd, ribonuclease D [Brucella abortus S19]
gi|225617256|gb|EEH14301.1| ribonuclease D [Brucella ceti str. Cudo]
gi|237790029|gb|EEP64239.1| ribonuclease D [Brucella abortus str. 2308 A]
gi|255999343|gb|ACU47742.1| ribonuclease D [Brucella microti CCM 4915]
gi|260096948|gb|EEW80823.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260668047|gb|EEX54987.1| ribonuclease D [Brucella abortus bv. 4 str. 292]
gi|260671986|gb|EEX58807.1| ribonuclease D [Brucella abortus bv. 2 str. 86/8/59]
gi|260873065|gb|EEX80134.1| ribonuclease D [Brucella abortus bv. 9 str. C68]
gi|260915363|gb|EEX82224.1| ribonuclease D [Brucella abortus bv. 3 str. Tulya]
gi|260923974|gb|EEX90542.1| ribonuclease D [Brucella ceti M13/05/1]
gi|261294306|gb|EEX97802.1| ribonuclease D [Brucella ceti M644/93/1]
gi|261296632|gb|EEY00129.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|261300847|gb|EEY04344.1| ribonuclease D [Brucella neotomae 5K33]
gi|261303517|gb|EEY07014.1| ribonuclease D [Brucella pinnipedialis M163/99/10]
gi|261737946|gb|EEY25942.1| ribonuclease D [Brucella sp. F5/99]
gi|261741828|gb|EEY29754.1| ribonuclease D [Brucella suis bv. 5 str. 513]
gi|264660643|gb|EEZ30904.1| ribonuclease D [Brucella pinnipedialis M292/94/1]
gi|297175279|gb|EFH34626.1| ribonuclease D [Brucella abortus bv. 5 str. B3196]
gi|340558840|gb|AEK54078.1| ribonuclease D [Brucella pinnipedialis B2/94]
gi|363401123|gb|AEW18093.1| ribonuclease D [Brucella abortus A13334]
gi|374540555|gb|EHR12055.1| ribonuclease D [Brucella abortus bv. 1 str. NI474]
gi|374542005|gb|EHR13495.1| ribonuclease D [Brucella abortus bv. 1 str. NI435a]
gi|374542741|gb|EHR14228.1| ribonuclease D [Brucella abortus bv. 1 str. NI486]
gi|374549783|gb|EHR21225.1| ribonuclease D [Brucella abortus bv. 1 str. NI010]
gi|374550302|gb|EHR21741.1| ribonuclease D [Brucella abortus bv. 1 str. NI016]
gi|374550586|gb|EHR22022.1| ribonuclease D [Brucella abortus bv. 1 str. NI488]
gi|374558786|gb|EHR30179.1| ribonuclease D [Brucella abortus bv. 1 str. NI259]
gi|374559376|gb|EHR30764.1| ribonuclease D [Brucella abortus bv. 1 str. NI021]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|17987486|ref|NP_540120.1| ribonuclease D [Brucella melitensis bv. 1 str. 16M]
gi|225852267|ref|YP_002732500.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|256264225|ref|ZP_05466757.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|260563791|ref|ZP_05834277.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265990860|ref|ZP_06103417.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|265994696|ref|ZP_06107253.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|384211128|ref|YP_005600210.1| ribonuclease D [Brucella melitensis M5-90]
gi|384408226|ref|YP_005596847.1| ribonuclease D [Brucella melitensis M28]
gi|384444837|ref|YP_005603556.1| ribonuclease D [Brucella melitensis NI]
gi|17983183|gb|AAL52384.1| ribonuclease d [Brucella melitensis bv. 1 str. 16M]
gi|225640632|gb|ACO00546.1| ribonuclease D [Brucella melitensis ATCC 23457]
gi|260153807|gb|EEW88899.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|262765809|gb|EEZ11598.1| ribonuclease D [Brucella melitensis bv. 3 str. Ether]
gi|263001644|gb|EEZ14219.1| ribonuclease D [Brucella melitensis bv. 1 str. Rev.1]
gi|263094471|gb|EEZ18293.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326408773|gb|ADZ65838.1| ribonuclease D [Brucella melitensis M28]
gi|326538491|gb|ADZ86706.1| ribonuclease D [Brucella melitensis M5-90]
gi|349742833|gb|AEQ08376.1| ribonuclease D [Brucella melitensis NI]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|23501637|ref|NP_697764.1| ribonuclease D [Brucella suis 1330]
gi|261754734|ref|ZP_05998443.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|376280430|ref|YP_005154436.1| ribonuclease D [Brucella suis VBI22]
gi|384224424|ref|YP_005615588.1| ribonuclease D [Brucella suis 1330]
gi|23347555|gb|AAN29679.1| ribonuclease D [Brucella suis 1330]
gi|261744487|gb|EEY32413.1| ribonuclease D [Brucella suis bv. 3 str. 686]
gi|343382604|gb|AEM18096.1| ribonuclease D [Brucella suis 1330]
gi|358258029|gb|AEU05764.1| ribonuclease D [Brucella suis VBI22]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|82699633|ref|YP_414207.1| 3'-5' exonuclease [Brucella melitensis biovar Abortus 2308]
gi|82615734|emb|CAJ10730.1| HRDC domain:3'-5' exonuclease:Ribonuclease D [Brucella melitensis
biovar Abortus 2308]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|306842001|ref|ZP_07474675.1| ribonuclease D [Brucella sp. BO2]
gi|306843696|ref|ZP_07476296.1| ribonuclease D [Brucella inopinata BO1]
gi|306276006|gb|EFM57715.1| ribonuclease D [Brucella inopinata BO1]
gi|306287929|gb|EFM59346.1| ribonuclease D [Brucella sp. BO2]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|265983854|ref|ZP_06096589.1| ribonuclease D [Brucella sp. 83/13]
gi|306837628|ref|ZP_07470498.1| ribonuclease D [Brucella sp. NF 2653]
gi|264662446|gb|EEZ32707.1| ribonuclease D [Brucella sp. 83/13]
gi|306407277|gb|EFM63486.1| ribonuclease D [Brucella sp. NF 2653]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|260754508|ref|ZP_05866856.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
gi|260674616|gb|EEX61437.1| ribonuclease D [Brucella abortus bv. 6 str. 870]
Length = 384
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|303286635|ref|XP_003062607.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456124|gb|EEH53426.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 720
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
LS + GK L+K + S+W RPL Q YAALDA+ L++V +VL ++
Sbjct: 658 LSHVARVVLGKPLDKSTRMSDWSARPLTERQRHYAALDAWVLVEVMRVLREE 709
>gi|161618719|ref|YP_001592606.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260566676|ref|ZP_05837146.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|376274500|ref|YP_005114939.1| ribonuclease D [Brucella canis HSK A52141]
gi|161335530|gb|ABX61835.1| ribonuclease D [Brucella canis ATCC 23365]
gi|260156194|gb|EEW91274.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|363403067|gb|AEW13362.1| ribonuclease D [Brucella canis HSK A52141]
Length = 382
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 140 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 195
>gi|407785630|ref|ZP_11132777.1| ribonuclease D [Celeribacter baekdonensis B30]
gi|407202580|gb|EKE72570.1| ribonuclease D [Celeribacter baekdonensis B30]
Length = 385
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L D+ R
Sbjct: 116 GEQVGYETLVRKIAKENLDKTSRFTDWSRRPLTTAQENYALADVTHLRVIYEFLRDEIKR 175
Query: 69 QGIE 72
+G E
Sbjct: 176 EGRE 179
>gi|421609533|ref|ZP_16050723.1| ribonuclease D [Rhodopirellula baltica SH28]
gi|408499629|gb|EKK04098.1| ribonuclease D [Rhodopirellula baltica SH28]
Length = 433
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
P SL+TLV K G+TL K + +NW +RPL Q++YA D L +++ L
Sbjct: 149 PASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKL 200
>gi|417306209|ref|ZP_12093130.1| ribonuclease D [Rhodopirellula baltica WH47]
gi|440714849|ref|ZP_20895418.1| ribonuclease D [Rhodopirellula baltica SWK14]
gi|327537477|gb|EGF24200.1| ribonuclease D [Rhodopirellula baltica WH47]
gi|436440221|gb|ELP33573.1| ribonuclease D [Rhodopirellula baltica SWK14]
Length = 433
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
P SL+TLV K G+TL K + +NW +RPL Q++YA D L +++ L
Sbjct: 149 PASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKL 200
>gi|330991792|ref|ZP_08315742.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
gi|329761260|gb|EGG77754.1| Ribonuclease D [Gluconacetobacter sp. SXCC-1]
Length = 395
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G ++K +FS+W RPL +QI YAA D L QVY L Q +
Sbjct: 123 GDQVGYDNLVWSLLGVQIDKSHRFSDWSVRPLSAAQIGYAAADVTYLRQVYGQLLAQLEK 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>gi|389746389|gb|EIM87569.1| hypothetical protein STEHIDRAFT_139203 [Stereum hirsutum FP-91666
SS1]
Length = 1192
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 13 SLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ +V +TLNK + SNWE +PL Q+ YAA DA+C L VY+ L
Sbjct: 357 SLAKVVAFYLRRTLNKGPVRTSNWERKPLSKEQMEYAANDAYCALLVYKKL 407
>gi|341877730|gb|EGT33665.1| hypothetical protein CAEBREN_26343 [Caenorhabditis brenneri]
Length = 790
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
++ LV G ++K +Q NW+ RPLR +QI YAALDA +++++
Sbjct: 569 MAVLVENLIGWKMDKSEQCGNWQARPLRKNQIVYAALDAVAVVELF 614
>gi|17554336|ref|NP_499105.1| Protein MUT-7 [Caenorhabditis elegans]
gi|466063|sp|P34607.1|MUT7_CAEEL RecName: Full=Probable exonuclease mut-7; AltName: Full=Exonuclease
3'-5' domain-containing protein 3 homolog
gi|3881488|emb|CAA80137.1| Protein MUT-7 [Caenorhabditis elegans]
Length = 910
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L G L+K +Q SNW+ RPLR QI YAALDA +++ ++
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFK 598
>gi|325578461|ref|ZP_08148596.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
gi|325160197|gb|EGC72326.1| ribonuclease D [Haemophilus parainfluenzae ATCC 33392]
Length = 383
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L+ LVL G ++K +NW RPL P Q+ YAA D + LL VYQ + + A+
Sbjct: 125 GLAKLVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQ---- 180
Query: 73 LGPLLTEVLSSHAVTTKKSTIL 94
P L V+ + K++ L
Sbjct: 181 -SPWLQAVIDDCQLAISKTSKL 201
>gi|345430292|ref|YP_004823412.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
gi|301156355|emb|CBW15826.1| ribonuclease D [Haemophilus parainfluenzae T3T1]
Length = 383
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L+ LVL G ++K +NW RPL P Q+ YAA D + LL VYQ + + A+
Sbjct: 125 GLAKLVLHYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQ---- 180
Query: 73 LGPLLTEVLSSHAVTTKKSTIL 94
P L V+ + K++ L
Sbjct: 181 -SPWLQAVIDDCQLAISKTSKL 201
>gi|117920828|ref|YP_870020.1| ribonuclease D [Shewanella sp. ANA-3]
gi|342179224|sp|A0KXU5.1|RND_SHESA RecName: Full=Ribonuclease D; Short=RNase D
gi|117613160|gb|ABK48614.1| ribonuclease D [Shewanella sp. ANA-3]
Length = 388
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG 74
+ LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L D+ Q LG
Sbjct: 139 AKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQD-RLG 197
Query: 75 PLLT--EVLSSHAVTTKKSTILYFSTVSGLDTKEHR 108
L E ++ + T Y + EH+
Sbjct: 198 WLYEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQ 233
>gi|342179229|sp|B8EN54.2|RND_METSB RecName: Full=Ribonuclease D; Short=RNase D
Length = 399
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV +L+K +F++W RPL P+Q+ YA D L +Y +L D+
Sbjct: 112 GDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKE 171
Query: 69 QGIELGPLLTEV 80
G LG L E+
Sbjct: 172 TG-RLGWLSDEM 182
>gi|217976404|ref|YP_002360551.1| ribonuclease D [Methylocella silvestris BL2]
gi|217501780|gb|ACK49189.1| ribonuclease D [Methylocella silvestris BL2]
Length = 405
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV +L+K +F++W RPL P+Q+ YA D L +Y +L D+
Sbjct: 118 GDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKE 177
Query: 69 QGIELGPLLTEV 80
G LG L E+
Sbjct: 178 TG-RLGWLSDEM 188
>gi|308809972|ref|XP_003082295.1| ankyrin-like protein (ISS) [Ostreococcus tauri]
gi|116060763|emb|CAL57241.1| ankyrin-like protein (ISS) [Ostreococcus tauri]
Length = 876
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+++V G L+K+ Q SNW+ RPL Q+ YAALDA +VL D R+GI
Sbjct: 684 SLASVVADTLGFALDKRCQRSNWDARPLSQQQLFYAALDA-------EVLLDIAFRRGI 735
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 114 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 114 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
S L+ L+ + FG TL+K+ Q +NW RPL P+ ++YA LD L+ + L + A +
Sbjct: 119 SEVGLAALLEEHFGVTLDKRYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAER 178
Query: 70 GI 71
G+
Sbjct: 179 GL 180
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 114 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 114 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 98 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 156
>gi|145352247|ref|XP_001420464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580698|gb|ABO98757.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 389
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 13 SLSTLVLKCFGKTLNK-QDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ L GKTL K + + SNWE L SQI YAA+DA+ L VY+ L
Sbjct: 148 SLARLCEHVLGKTLPKDKTRMSNWEREELNESQIKYAAMDAWASLLVYRAL 198
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 114 SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 178
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 111 TQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|268573492|ref|XP_002641723.1| Hypothetical protein CBG10060 [Caenorhabditis briggsae]
Length = 729
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD--QCARQGIELGPLLTE 79
T++K +Q NW +RPLR SQI YA +D+ +L+V++ + + Q Q +E+ L+ E
Sbjct: 521 TIDKSEQNGNWMSRPLRKSQIVYATMDSVVVLKVFEKVLELAQKYEQPLEIDKLMEE 577
>gi|339242529|ref|XP_003377190.1| putative exonuclease mut-7-like protein [Trichinella spiralis]
gi|316974026|gb|EFV57565.1| putative exonuclease mut-7-like protein [Trichinella spiralis]
Length = 576
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 21 CF---GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
CF G L+K ++ SNW+ RPLR Q+ YAALDA+ ++ + L D
Sbjct: 513 CFVYLGYWLSKSERMSNWQRRPLREMQMQYAALDAYSVISICDRLED 559
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 111 TQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q A+
Sbjct: 111 TQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLAK 169
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 178
>gi|451981521|ref|ZP_21929873.1| putative ribonuclease D [Nitrospina gracilis 3/211]
gi|451761194|emb|CCQ91137.1| putative ribonuclease D [Nitrospina gracilis 3/211]
Length = 393
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G+ S + LV + GK L+K + +S+W RPL P+QI YA D L+ VY+
Sbjct: 110 GAQISFAKLVKRATGKRLHKNETYSDWCRRPLSPNQIEYALDDVRFLVPVYE 161
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 178
>gi|343517668|ref|ZP_08754665.1| ribonuclease D [Haemophilus pittmaniae HK 85]
gi|343395104|gb|EGV07649.1| ribonuclease D [Haemophilus pittmaniae HK 85]
Length = 261
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L+ LV G ++K +NW RPL P+Q+ YAA D + LL +YQ + RQ ++
Sbjct: 2 GLAKLVQHYLGLEIDKGATRTNWLKRPLSPAQLQYAAGDVWYLLPIYQQM-----RQALQ 56
Query: 73 LGPLLTEVLSSHAVTTKKSTIL 94
P L V + K+T L
Sbjct: 57 QTPWLEAVYDDCRLALMKTTKL 78
>gi|268532256|ref|XP_002631256.1| C. briggsae CBR-CRN-3 protein [Caenorhabditis briggsae]
Length = 868
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SL+ L + L+KQ Q ++W RPLR + I+YA D LL Y +L +Q +QG
Sbjct: 385 SLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLQQG 442
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 178
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+K+ QF++W RPL P QI YA D L VY L +Q A+ G
Sbjct: 125 SLSKKQQFTDWTRRPLLPEQIEYALNDVRYLFPVYDGLLEQLAQHG 170
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 178
>gi|153009869|ref|YP_001371084.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
gi|404320174|ref|ZP_10968107.1| ribonuclease D [Ochrobactrum anthropi CTS-325]
gi|151561757|gb|ABS15255.1| ribonuclease D [Ochrobactrum anthropi ATCC 49188]
Length = 385
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK ++K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTGKQIDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELEK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|32473842|ref|NP_866836.1| ribonuclease D [Rhodopirellula baltica SH 1]
gi|32444378|emb|CAD74377.1| ribonuclease D [Rhodopirellula baltica SH 1]
Length = 493
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
P SL+TLV K G+TL K + +NW +RPL Q++YA D L +++ L
Sbjct: 209 PASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKL 260
>gi|317484427|ref|ZP_07943341.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
gi|316924315|gb|EFV45487.1| 3'-5' exonuclease [Bilophila wadsworthia 3_1_6]
Length = 198
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
Q L TL + G ++K Q SNW + L P QI YAA DA+ ++Y + DQ
Sbjct: 144 QGLRTLAAQLMGCRISKAAQCSNWAKKTLTPQQIRYAATDAWIGREIYLCMMDQ 197
>gi|113970513|ref|YP_734306.1| ribonuclease D [Shewanella sp. MR-4]
gi|113885197|gb|ABI39249.1| ribonuclease D [Shewanella sp. MR-4]
Length = 384
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG 74
+ LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L D+ Q LG
Sbjct: 135 AKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQD-RLG 193
Query: 75 PLLTE 79
L E
Sbjct: 194 WLYEE 198
>gi|126174091|ref|YP_001050240.1| ribonuclease D [Shewanella baltica OS155]
gi|386340851|ref|YP_006037217.1| ribonuclease D [Shewanella baltica OS117]
gi|125997296|gb|ABN61371.1| ribonuclease D [Shewanella baltica OS155]
gi|334863252|gb|AEH13723.1| ribonuclease D [Shewanella baltica OS117]
Length = 369
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L + +
Sbjct: 114 GHGVGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSA 173
Query: 69 QG 70
QG
Sbjct: 174 QG 175
>gi|114047748|ref|YP_738298.1| ribonuclease D [Shewanella sp. MR-7]
gi|113889190|gb|ABI43241.1| ribonuclease D [Shewanella sp. MR-7]
Length = 384
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG 74
+ LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L D+ Q LG
Sbjct: 135 AKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQD-RLG 193
Query: 75 PLLTE 79
L E
Sbjct: 194 WLYEE 198
>gi|448747752|ref|ZP_21729407.1| Ribonuclease D [Halomonas titanicae BH1]
gi|445564695|gb|ELY20812.1| Ribonuclease D [Halomonas titanicae BH1]
Length = 383
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
G+TL K++ SNW RPL P+Q YAALD LL+V+ + ++ A G
Sbjct: 139 GETLPKEETRSNWLLRPLSPAQCQYAALDVIYLLKVWTLQAEKLAMLG 186
>gi|374291597|ref|YP_005038632.1| Ribonuclease D [Azospirillum lipoferum 4B]
gi|357423536|emb|CBS86395.1| Ribonuclease D [Azospirillum lipoferum 4B]
Length = 396
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K G ++K +F++W +RPL Q++YA D L Y+ L + AR
Sbjct: 112 GESVGYETLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLAR 171
Query: 69 QG 70
G
Sbjct: 172 SG 173
>gi|297184397|gb|ADI20513.1| ribonuclease d [uncultured alpha proteobacterium EB080_L58F04]
Length = 387
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K +++K +F++W RPL +Q SYA D L QVY+ L + +
Sbjct: 116 GEQVGYETLVRKITKNSIDKSSRFTDWSRRPLTEAQKSYALADVTHLRQVYEFLRAKIEK 175
Query: 69 QGIELGPLLTEVL 81
G GP + E L
Sbjct: 176 TG--RGPWVEEEL 186
>gi|288958469|ref|YP_003448810.1| ribonuclease D [Azospirillum sp. B510]
gi|288910777|dbj|BAI72266.1| ribonuclease D [Azospirillum sp. B510]
Length = 396
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K G ++K +F++W +RPL Q++YA D L Y+ L + AR
Sbjct: 112 GESVGYETLVTKLAGARIDKSSRFTDWSHRPLTERQLTYALSDVIHLRPAYEKLKRRLAR 171
Query: 69 QG 70
G
Sbjct: 172 SG 173
>gi|153000417|ref|YP_001366098.1| ribonuclease D [Shewanella baltica OS185]
gi|160875014|ref|YP_001554330.1| ribonuclease D [Shewanella baltica OS195]
gi|217973594|ref|YP_002358345.1| ribonuclease D [Shewanella baltica OS223]
gi|378708257|ref|YP_005273151.1| ribonuclease D [Shewanella baltica OS678]
gi|418024903|ref|ZP_12663884.1| ribonuclease D [Shewanella baltica OS625]
gi|151365035|gb|ABS08035.1| ribonuclease D [Shewanella baltica OS185]
gi|160860536|gb|ABX49070.1| ribonuclease D [Shewanella baltica OS195]
gi|217498729|gb|ACK46922.1| ribonuclease D [Shewanella baltica OS223]
gi|315267246|gb|ADT94099.1| ribonuclease D [Shewanella baltica OS678]
gi|353535758|gb|EHC05319.1| ribonuclease D [Shewanella baltica OS625]
Length = 369
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L + +
Sbjct: 114 GHGVGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSA 173
Query: 69 QG 70
QG
Sbjct: 174 QG 175
>gi|110633474|ref|YP_673682.1| ribonuclease D [Chelativorans sp. BNC1]
gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
Length = 392
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LVL+ G+ ++K +F++W +RPL Q+ YA D L+ VY L + R
Sbjct: 112 GDSISYDQLVLRITGEHIDKTSRFTDWRHRPLSEKQLRYALADVTHLIPVYAHLTTELQR 171
Query: 69 QGIE 72
G E
Sbjct: 172 GGRE 175
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L ++ + D+ ++ +
Sbjct: 98 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNL 156
>gi|414589140|tpg|DAA39711.1| TPA: hypothetical protein ZEAMMB73_184842 [Zea mays]
Length = 618
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + G L+K+ Q S+W RPL QI YAA DA+ LL ++ + + +G
Sbjct: 298 KSLATICEELLGILLSKELQCSDWSCRPLSEGQIQYAASDAYYLLDIFDLFQKRITMEG 356
>gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1]
Length = 585
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+++ G++++K++QFSNW ++ L SQI YAA D L +Y+ L ++ ++
Sbjct: 110 SLASVYNHFTGESIDKKEQFSNWSSKELTESQIFYAAKDVEVLRLLYEKLKNELNKE--- 166
Query: 73 LGPLLTEVLSSHAV 86
P + E+L V
Sbjct: 167 --PTIIEILQKSRV 178
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L ++ + D+ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNL 178
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L ++ + D+ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNL 178
>gi|381397371|ref|ZP_09922783.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
gi|380775356|gb|EIC08648.1| 3'-5' exonuclease [Microbacterium laevaniformans OR221]
Length = 398
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L +V G TL K ++W RPL + YAALD L+ V++VL D+ QG
Sbjct: 117 LGAVVEDTLGITLAKAHSAADWSTRPLPQPWLEYAALDVLHLVDVFEVLRDELEEQG 173
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG--PLLTEVLSS 83
L+K++Q SNWE RPL SQ+ YAALD L ++ + G ELG LL E +S
Sbjct: 116 LSKKEQKSNWEKRPLEKSQLQYAALDTVYLESIW-------TKMGEELGKRKLLDEAVSE 168
Query: 84 HA 85
A
Sbjct: 169 FA 170
>gi|294951230|ref|XP_002786896.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC
50983]
gi|239901447|gb|EER18692.1| hypothetical protein Pmar_PMAR011449 [Perkinsus marinus ATCC
50983]
Length = 94
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+P+SL L K L K ++ SNWE PL PSQ+ YAA DA+ QV + +
Sbjct: 33 TPRSLQGLCALFLHKRLLKAERISNWEQVPLSPSQLEYAATDAWVSRQVLEAMR 86
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 171 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNL 229
>gi|449015749|dbj|BAM79151.1| unknown ribonuclease [Cyanidioschyzon merolae strain 10D]
Length = 1224
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
L+ LV G+ +K+ + S+WE RPL +QI YAALDA+ LL + + H CA
Sbjct: 715 LAQLVAVFLGRAFDKRPRCSDWEARPLTRAQIEYAALDAWVLLALRR--HVPCA 766
>gi|391325253|ref|XP_003737153.1| PREDICTED: uncharacterized protein LOC100901281 [Metaseiulus
occidentalis]
Length = 452
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFS--NWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ LS L G+ LNK + S NWE RPL S + YAALDA CL+ ++ L
Sbjct: 370 RGLSRLCNILLGRPLNKSKKLSMTNWEKRPLARSSLEYAALDAHCLVLCWKEL 422
>gi|419801555|ref|ZP_14326779.1| ribonuclease D [Haemophilus parainfluenzae HK262]
gi|419845060|ref|ZP_14368347.1| ribonuclease D [Haemophilus parainfluenzae HK2019]
gi|385193471|gb|EIF40833.1| ribonuclease D [Haemophilus parainfluenzae HK262]
gi|386416986|gb|EIJ31478.1| ribonuclease D [Haemophilus parainfluenzae HK2019]
Length = 383
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 73
L+ LVL G ++K +NW RPL P Q+ YAA D + LL VYQ + + A+
Sbjct: 126 LAKLVLNYLGIEMDKGATRTNWLKRPLSPVQLQYAAGDVWYLLPVYQKMQIELAQS---- 181
Query: 74 GPLLTEVLSSHAVTTKKSTIL 94
P L V+ + K++ L
Sbjct: 182 -PWLQAVIDDCQLAISKTSKL 201
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG--PLLTEVLSS 83
L+K++Q SNWE RPL SQ+ YAALD L ++ + G ELG LL E +S
Sbjct: 133 LSKKEQKSNWEKRPLEKSQLQYAALDTVYLESIW-------TKMGEELGKRKLLDEAVSE 185
Query: 84 HA 85
A
Sbjct: 186 FA 187
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 98 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMREELIKRNL 156
>gi|17531757|ref|NP_496283.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|3874231|emb|CAA90108.1| Protein CRN-3, isoform a [Caenorhabditis elegans]
gi|31747255|gb|AAP57299.1| cell death-related nuclease 3 [Caenorhabditis elegans]
Length = 876
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
SL+ L L+ L+KQ Q ++W RPLR + I+YA D LL Y +L +Q +Q
Sbjct: 392 SLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 448
>gi|359787365|ref|ZP_09290421.1| ribonuclease D [Halomonas sp. GFAJ-1]
gi|359295382|gb|EHK59652.1| ribonuclease D [Halomonas sp. GFAJ-1]
Length = 377
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
G+TL K++ SNW RPL PSQ YAALD LL+V+ + ++ G
Sbjct: 132 GETLPKEETRSNWLVRPLTPSQCEYAALDVIYLLKVWSLQAEKLEELG 179
>gi|452943739|ref|YP_007499904.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. HO]
gi|452882157|gb|AGG14861.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. HO]
Length = 585
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+++ G++++K++QFSNW ++ L SQI YAA D L +Y+ L ++ ++
Sbjct: 110 SLASVYNYFTGESIDKKEQFSNWSSKELTESQIFYAAKDVEVLRLLYEKLKNELNKE--- 166
Query: 73 LGPLLTEVLSSHAV 86
P + E+L V
Sbjct: 167 --PTIVEILQKSRV 178
>gi|375264824|ref|YP_005022267.1| ribonuclease D [Vibrio sp. EJY3]
gi|369840148|gb|AEX21292.1| ribonuclease D [Vibrio sp. EJY3]
Length = 388
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y++L D+
Sbjct: 128 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEILLDKVT 187
Query: 68 RQG 70
G
Sbjct: 188 EAG 190
>gi|308809271|ref|XP_003081945.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri]
gi|116060412|emb|CAL55748.1| Werner Syndrome-like exonuclease (ISS) [Ostreococcus tauri]
Length = 455
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 13 SLSTLVLKCFGKTLNK-QDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ L GKTL K + + SNWE L +QI YAA+DA+ L VY+ L
Sbjct: 220 SLARLCEHVLGKTLPKDKTRMSNWEREKLNENQIKYAAMDAWASLMVYRAL 270
>gi|391232023|ref|ZP_10268229.1| ribonuclease D [Opitutaceae bacterium TAV1]
gi|391221684|gb|EIQ00105.1| ribonuclease D [Opitutaceae bacterium TAV1]
Length = 375
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ FG TL+K Q +NW RPL + YA+LD + L ++ +L + AR G
Sbjct: 125 LAALLSDHFGVTLDKGGQKANWSRRPLTAKLLDYASLDVWHLFELRDILTRELARLG 181
>gi|373949231|ref|ZP_09609192.1| ribonuclease D [Shewanella baltica OS183]
gi|386324929|ref|YP_006021046.1| ribonuclease D [Shewanella baltica BA175]
gi|333819074|gb|AEG11740.1| ribonuclease D [Shewanella baltica BA175]
gi|373885831|gb|EHQ14723.1| ribonuclease D [Shewanella baltica OS183]
Length = 369
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L + +
Sbjct: 114 GHGVGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLSYAANDVLYLYQLYPQLEAKLSV 173
Query: 69 QG 70
QG
Sbjct: 174 QG 175
>gi|409400585|ref|ZP_11250609.1| ribonuclease D [Acidocella sp. MX-AZ02]
gi|409130471|gb|EKN00236.1| ribonuclease D [Acidocella sp. MX-AZ02]
Length = 387
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G ++K +FS+W RPL SQI+YAA D L VY+ L + A
Sbjct: 117 GDQVGYDSLVNALTGAHIDKAHRFSDWSARPLSKSQINYAAADVTHLRDVYEKLSAKLAA 176
Query: 69 QG 70
+G
Sbjct: 177 EG 178
>gi|383761955|ref|YP_005440937.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381382223|dbj|BAL99039.1| ribonuclease D [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 395
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ ++ K FG NK+ Q ++W RPL P QI+YA +D LL + L ++ R+G
Sbjct: 129 LAAILEKHFGIVSNKRMQRTDWGKRPLTPEQIAYAQMDTHYLLPLRDRLAEELRRKG 185
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI------ELGPL 76
G TL K + ++W RPL P QI YA D L++ Y V+ ++ + G E+ PL
Sbjct: 124 GVTLPKSESLTDWSRRPLTPEQIEYALDDVRYLIKAYDVIMERLDKSGRASWVLDEIKPL 183
Query: 77 LTEVLSSHAVTTKKSTILYFSTVSGLDTKEHRQLCL 112
SH V ++ + F V +++ RQL +
Sbjct: 184 TDR---SHYVVDRR---VAFKRVKRVNSLTRRQLAV 213
>gi|386286585|ref|ZP_10063773.1| ribonuclease D [gamma proteobacterium BDW918]
gi|385280382|gb|EIF44306.1| ribonuclease D [gamma proteobacterium BDW918]
Length = 371
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
S L+++C G + K + S+W RPL SQ +YAALD L +VY +L + +G
Sbjct: 122 SYQKLIMECLGIHVEKGETRSDWLRRPLSESQCTYAALDVLYLQKVYPLLKQRLEAKG 179
>gi|421504183|ref|ZP_15951127.1| ribonuclease D [Pseudomonas mendocina DLHK]
gi|400345284|gb|EJO93650.1| ribonuclease D [Pseudomonas mendocina DLHK]
Length = 377
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV G L K + S+W RPL +QISYAA D L++VYQVL
Sbjct: 115 GFSMGYSRLVQTLLGIELPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQVL 168
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNL 178
>gi|254473302|ref|ZP_05086699.1| ribonuclease D [Pseudovibrio sp. JE062]
gi|374331117|ref|YP_005081301.1| Ribonuclease D [Pseudovibrio sp. FO-BEG1]
gi|211957418|gb|EEA92621.1| ribonuclease D [Pseudovibrio sp. JE062]
gi|359343905|gb|AEV37279.1| Ribonuclease D [Pseudovibrio sp. FO-BEG1]
Length = 405
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G+ ++K +F++W RPL Q++YA D L +VY L Q +
Sbjct: 112 GDSVSYDQLVSKVTGERIDKSSRFTDWSRRPLTNKQLAYALADVTHLREVYLFLKKQLEQ 171
Query: 69 QG 70
+G
Sbjct: 172 KG 173
>gi|353241035|emb|CCA72874.1| hypothetical protein PIIN_06810 [Piriformospora indica DSM 11827]
Length = 525
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+G P L+ LV + GK L+K Q SNW PL QI YAA D L VY L
Sbjct: 340 KGRPIGLARLVARYQGKKLDKGSQLSNWAA-PLNKKQIDYAANDGCAGLDVYNTL 393
>gi|72388593|gb|AAZ67939.1| At5g24340 [Arabidopsis thaliana]
gi|72388595|gb|AAZ67940.1| At5g24340 [Arabidopsis thaliana]
gi|72388597|gb|AAZ67941.1| At5g24340 [Arabidopsis thaliana]
gi|72388599|gb|AAZ67942.1| At5g24340 [Arabidopsis thaliana]
gi|72388601|gb|AAZ67943.1| At5g24340 [Arabidopsis thaliana]
gi|72388603|gb|AAZ67944.1| At5g24340 [Arabidopsis thaliana]
gi|72388609|gb|AAZ67947.1| At5g24340 [Arabidopsis thaliana]
gi|72388611|gb|AAZ67948.1| At5g24340 [Arabidopsis thaliana]
Length = 163
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 21 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEA 80
Query: 65 QCARQGIELGPL------LTEVLSSHAVTTKKSTI 93
+GI + L L E+L+ ++K T+
Sbjct: 81 HLV-EGITVQDLRVINVGLQEILTESDYSSKIVTV 114
>gi|72388605|gb|AAZ67945.1| At5g24340 [Arabidopsis thaliana]
gi|72388607|gb|AAZ67946.1| At5g24340 [Arabidopsis thaliana]
Length = 163
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 21 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEA 80
Query: 65 QCARQGIELGPL------LTEVLSSHAVTTKKSTI 93
+GI + L L E+L+ ++K T+
Sbjct: 81 HLV-EGITVQDLRVINVGLQEILTESDYSSKIVTV 114
>gi|408791723|ref|ZP_11203333.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463133|gb|EKJ86858.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 406
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
TL+K +Q SNWE RPL+ Q+ YAALD L ++ + ++ R+G+
Sbjct: 132 TLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEELKRRGL 178
>gi|72388613|gb|AAZ67949.1| At5g24340 [Arabidopsis thaliana]
gi|72388615|gb|AAZ67950.1| At5g24340 [Arabidopsis thaliana]
gi|72388617|gb|AAZ67951.1| At5g24340 [Arabidopsis thaliana]
gi|72388619|gb|AAZ67952.1| At5g24340 [Arabidopsis thaliana]
Length = 163
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 21 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEA 80
Query: 65 QCARQGIELGPL------LTEVLSSHAVTTKKSTI 93
+GI + L L E+L+ ++K T+
Sbjct: 81 HLV-EGITVQDLRVINVGLQEILTESYYSSKIVTV 114
>gi|414341731|ref|YP_006983252.1| ribonuclease D [Gluconobacter oxydans H24]
gi|411027066|gb|AFW00321.1| ribonuclease D [Gluconobacter oxydans H24]
gi|453329592|dbj|GAC88242.1| ribonuclease D [Gluconobacter thailandicus NBRC 3255]
Length = 400
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G+ ++K +FS+W RPL +QI+YAA D L VY L Q
Sbjct: 122 GDQVGYDSLVGAITGQAIDKAHRFSDWSARPLTKAQIAYAAADVTHLRTVYLALRQQLED 181
Query: 69 QG 70
+G
Sbjct: 182 EG 183
>gi|407775184|ref|ZP_11122479.1| ribonuclease D [Thalassospira profundimaris WP0211]
gi|407281609|gb|EKF07170.1| ribonuclease D [Thalassospira profundimaris WP0211]
Length = 371
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K K+++K +F++W RPL QISYA D L +Y+ H++
Sbjct: 99 GDQVGYETLVNKVARKSIDKSMRFTDWSRRPLSTKQISYALSDVTHLRVIYEAFHERLEA 158
Query: 69 QG 70
G
Sbjct: 159 NG 160
>gi|261221947|ref|ZP_05936228.1| ribonuclease D [Brucella ceti B1/94]
gi|265997910|ref|ZP_06110467.1| ribonuclease D [Brucella ceti M490/95/1]
gi|260920531|gb|EEX87184.1| ribonuclease D [Brucella ceti B1/94]
gi|262552378|gb|EEZ08368.1| ribonuclease D [Brucella ceti M490/95/1]
Length = 385
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L+ K GK L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLMQKVTGKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNL 178
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNL 178
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNL 178
>gi|225156183|ref|ZP_03724663.1| 3'-5' exonuclease [Diplosphaera colitermitum TAV2]
gi|224803073|gb|EEG21316.1| 3'-5' exonuclease [Diplosphaera colitermitum TAV2]
Length = 389
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ + FG TL+K Q +NW RPL P + YA+LD + L + +L + +R G
Sbjct: 141 LAALLSEHFGVTLDKGGQKANWSKRPLTPKLLDYASLDVWHLPALRDILTRELSRLG 197
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+ L+ K G T +KQ Q ++W RPL I YA D LL ++ L ++ R G E
Sbjct: 364 SLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNELIRTGNE 423
Query: 73 LGPLLTEVLS-SHAVTTKKSTILYFSTVSGLD--TKEHRQL 110
LL V S S V K F++ S ++ TK+ R L
Sbjct: 424 NNNLLLSVYSRSTEVCQKHYEKPLFTSESYMNLYTKQRRPL 464
>gi|357122944|ref|XP_003563173.1| PREDICTED: probable exonuclease mut-7 homolog [Brachypodium
distachyon]
Length = 492
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+SL+T+ + +L+K+ Q S+W RPL QI YAA DA+ LL ++ + H
Sbjct: 173 KSLATICEELLNVSLSKELQCSDWSCRPLSEGQIQYAASDAYYLLDIFDLFH 224
>gi|410944601|ref|ZP_11376342.1| ribonuclease D [Gluconobacter frateurii NBRC 101659]
Length = 401
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +LV G+ ++K +FS+W RPL +QI+YAA D L VY L Q
Sbjct: 122 GDQVGYDSLVGAITGQAIDKAHRFSDWSARPLTKAQIAYAAADVTHLRTVYLALRKQLED 181
Query: 69 QG 70
+G
Sbjct: 182 EG 183
>gi|430003114|emb|CCF18897.1| Ribonuclease D (RNase D) [Rhizobium sp.]
Length = 381
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSVSYDQLVQRTTGAHIDKTSRFTDWSRRPLSDKQLEYALADVTHLRDVYAALKAQLER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|444311740|ref|ZP_21147342.1| ribonuclease D [Ochrobactrum intermedium M86]
gi|443484862|gb|ELT47662.1| ribonuclease D [Ochrobactrum intermedium M86]
Length = 385
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK ++K +F++W RPL Q+ YA D L +Y L + +
Sbjct: 112 GDAISYDQLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|239831578|ref|ZP_04679907.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
gi|239823845|gb|EEQ95413.1| ribonuclease D [Ochrobactrum intermedium LMG 3301]
Length = 385
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K GK ++K +F++W RPL Q+ YA D L +Y L + +
Sbjct: 112 GDAISYDQLVQKVTGKHIDKSSRFTDWRRRPLSEKQLDYALADVTYLRDIYLYLKQELEK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ SL TL+ + + K+ QFS+W NRPL +Q++Y+ D L+Q+ + L Q A+
Sbjct: 111 TQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYSIKDVEYLIQLKEYLQQQLAK 169
>gi|336311686|ref|ZP_08566647.1| ribonuclease D [Shewanella sp. HN-41]
gi|335864800|gb|EGM69869.1| ribonuclease D [Shewanella sp. HN-41]
Length = 378
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV C G+ ++K + ++W RPL +Q++YAA D L Q+Y L + +
Sbjct: 123 GHGVGYAKLVETCLGEVIDKGESRTDWIRRPLSEAQLTYAANDVLFLYQLYPQLEAKLSA 182
Query: 69 QG 70
QG
Sbjct: 183 QG 184
>gi|428170043|gb|EKX38971.1| hypothetical protein GUITHDRAFT_143786 [Guillardia theta CCMP2712]
Length = 694
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
Q S LS VL G LNK+ S+W RPL Q+ YAALDA LL +++
Sbjct: 627 QSSLAGLSREVLD--GAELNKEQAMSDWSQRPLSAPQLRYAALDALVLLPLFK 677
>gi|326508692|dbj|BAJ95868.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 562
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
LS L K G LNK + S+WE RPL +Q YAALDA L+ ++ + Q
Sbjct: 481 LSGLSKKILGAGLNKTRRNSDWEQRPLSQNQKEYAALDAAVLVHIFHHVRGQ 532
>gi|297626438|ref|YP_003688201.1| ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922203|emb|CBL56771.1| Ribonuclease D (3-5 exonuclease) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 445
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ SL T++ + FG L K+ ++W RPL P I+YAALD L+++ ++ D+
Sbjct: 150 GFPRVSLGTMIEQHFGVHLLKEHSAADWSRRPLPPDWIAYAALDVELLIELRNLVADELV 209
Query: 68 RQG 70
G
Sbjct: 210 AAG 212
>gi|149196457|ref|ZP_01873512.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
gi|149140718|gb|EDM29116.1| hypothetical protein LNTAR_14907 [Lentisphaera araneosa HTCC2155]
Length = 372
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 9 GSPQ--SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G+P+ SL+ L L+ ++K Q S+W RPL+ SQ++YAA D L+++ + L ++
Sbjct: 110 GAPKQVSLAKLCLEMMDIEISKTQQVSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKL 169
Query: 67 ARQG 70
G
Sbjct: 170 KENG 173
>gi|319405613|emb|CBI79236.1| Ribonuclease D [Bartonella sp. AR 15-3]
Length = 383
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L +VY VL Q
Sbjct: 112 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLVLKKQ 168
>gi|15237941|ref|NP_197822.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
gi|10177895|dbj|BAB11227.1| unnamed protein product [Arabidopsis thaliana]
gi|30102678|gb|AAP21257.1| At5g24340 [Arabidopsis thaliana]
gi|110743600|dbj|BAE99637.1| hypothetical protein [Arabidopsis thaliana]
gi|332005912|gb|AED93295.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
Length = 505
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 144 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEA 203
Query: 65 QCARQGIELGPL------LTEVLSSHAVTTKKSTI 93
+GI + L L E+L+ ++K T+
Sbjct: 204 HLV-EGITVQDLRVINVGLQEILTESDYSSKIVTV 237
>gi|325282020|ref|YP_004254562.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
gi|324313829|gb|ADY34382.1| 3'-5' exonuclease [Odoribacter splanchnicus DSM 20712]
Length = 203
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+S S L+ FG ++K+ + SNWE L +QI YAA DA+ L++YQ L
Sbjct: 140 KSFSKLMAIIFGVKISKRQRTSNWEAPALTEAQIRYAATDAWGALKMYQRL 190
>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
Length = 925
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
L + + G+ L+K +Q S+W RPL Q+ YAALDA LL VLH++ R+
Sbjct: 868 HGLGAVCARELGRELDKHEQRSDWTLRPLTQRQLDYAALDAEVLL----VLHERFTRE 921
>gi|218129756|ref|ZP_03458560.1| hypothetical protein BACEGG_01335 [Bacteroides eggerthii DSM 20697]
gi|217987866|gb|EEC54191.1| 3'-5' exonuclease [Bacteroides eggerthii DSM 20697]
Length = 210
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L PSQ YAA DA+ L +Y L +
Sbjct: 138 RSLQKIYAILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE 190
>gi|317475897|ref|ZP_07935153.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
gi|316907930|gb|EFV29628.1| 3'-5' exonuclease [Bacteroides eggerthii 1_2_48FAA]
Length = 210
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L PSQ YAA DA+ L +Y L +
Sbjct: 138 RSLQKIYAILFGEKISKSQRLSNWEAEMLTPSQQQYAATDAWACLNIYNRLQE 190
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ YAALD L +++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQFQYAALDTVYLETIWEKMKEELIKRNL 178
>gi|294673634|ref|YP_003574250.1| 3'-5' exonuclease [Prevotella ruminicola 23]
gi|294472246|gb|ADE81635.1| 3'-5' exonuclease [Prevotella ruminicola 23]
Length = 217
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
QSL+ L FG+ ++K++Q +NWE L Q YAA DA+ +Q+Y
Sbjct: 140 QSLAKLYANVFGERISKREQLTNWERDVLDDHQKRYAATDAWACVQLY 187
>gi|373500567|ref|ZP_09590947.1| hypothetical protein HMPREF9140_01065 [Prevotella micans F0438]
gi|371953370|gb|EHO71197.1| hypothetical protein HMPREF9140_01065 [Prevotella micans F0438]
Length = 213
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL L FG+ + K++Q SNWEN+ L Q Y A DA+ +++Y+ L +
Sbjct: 140 KSLQKLYANIFGERIVKREQLSNWENQVLTDKQKIYGATDAWTCIRIYERLQE 192
>gi|336124579|ref|YP_004566627.1| ribonuclease D [Vibrio anguillarum 775]
gi|335342302|gb|AEH33585.1| Ribonuclease D [Vibrio anguillarum 775]
Length = 372
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G ++K + ++W RPL Q+ YAA D F LL +Y+ L D+ +
Sbjct: 113 GLSTGFAALVNEFLGIEIDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQ 172
Query: 69 QG 70
G
Sbjct: 173 AG 174
>gi|335043651|ref|ZP_08536678.1| ribonuclease D [Methylophaga aminisulfidivorans MP]
gi|333790265|gb|EGL56147.1| ribonuclease D [Methylophaga aminisulfidivorans MP]
Length = 381
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV +C G L+K ++W RPL +Q+ YAA D L Q+Y L D+ R
Sbjct: 113 GDQIGYGNLVKQCLGVELDKGQARTDWRQRPLSEAQVDYAADDVRYLRQLYLQLVDELNR 172
Query: 69 QG 70
G
Sbjct: 173 TG 174
>gi|283781120|ref|YP_003371875.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
gi|283439573|gb|ADB18015.1| 3'-5' exonuclease [Pirellula staleyi DSM 6068]
Length = 399
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
P S TL + GK+L K + ++W RPL Q+ YA LD L Q+ VL + + G
Sbjct: 115 PASYGTLAQRLIGKSLPKDETRTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLG 174
>gi|359395589|ref|ZP_09188641.1| Ribonuclease D [Halomonas boliviensis LC1]
gi|357969854|gb|EHJ92301.1| Ribonuclease D [Halomonas boliviensis LC1]
Length = 378
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
G+TL K++ SNW RPL P+Q YAALD LL+V+ +
Sbjct: 133 GETLPKEETRSNWLVRPLSPAQCHYAALDVIYLLKVWTL 171
>gi|340027471|ref|ZP_08663534.1| ribonuclease D [Paracoccus sp. TRP]
Length = 404
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W +RPL +Q SYA D L +Y+ L Q +
Sbjct: 133 GEQVGYETLVRKIARQPLDKSSRFTDWSHRPLSDAQASYALADVTHLRAIYEFLSAQLEK 192
Query: 69 QGIELGPLLTE 79
G P L E
Sbjct: 193 TG--RAPWLAE 201
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
SL TL+ + + K+ QFS+W NRPL Q++YA D L+Q+ + L Q
Sbjct: 114 SLKTLLKEILDIEMEKESQFSDWRNRPLTQKQLNYAIKDVEYLIQLKEYLQQQ 166
>gi|375256792|ref|YP_005015959.1| 3'-5' exonuclease [Tannerella forsythia ATCC 43037]
gi|363407096|gb|AEW20782.1| 3'-5' exonuclease [Tannerella forsythia ATCC 43037]
Length = 198
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
SL + FGK ++K+ + +NW+ L +Q +YAALDA+ L++YQ+L +
Sbjct: 144 SLQKIYAILFGKKISKRTRLTNWDADILTDAQQNYAALDAWACLRIYQLLKSE 196
>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
Length = 292
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 129 GLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTE 188
Query: 69 QG 70
G
Sbjct: 189 AG 190
>gi|72388621|gb|AAZ67953.1| At5g24340-like protein [Arabidopsis lyrata]
Length = 163
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 21 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKA 80
Query: 65 --------QCARQ-GIELGPLLTEVLSSHAVTTKK 90
Q +R+ + L +LTE S + T K
Sbjct: 81 HLVEGITVQDSREKNVGLQEILTESDYSSKIVTAK 115
>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
Length = 925
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
L + + G+ L+K +Q S+W RPL Q+ YAALDA LL LH++ R+
Sbjct: 868 HGLGAVCARELGRELDKHEQRSDWTQRPLTQRQLDYAALDAEVLL----ALHERFTRE 921
>gi|402829193|ref|ZP_10878069.1| ribonuclease D [Slackia sp. CM382]
gi|402284174|gb|EJU32677.1| ribonuclease D [Slackia sp. CM382]
Length = 397
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
TLVL G L K D F++W RPL SQI+YA D L ++Y+ L ++
Sbjct: 117 TLVLNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTER 166
>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
Length = 399
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
TLVL G L K D F++W RPL SQI+YA D L ++Y+ L ++
Sbjct: 119 TLVLNECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTER 168
>gi|399992523|ref|YP_006572763.1| ribonuclease D [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398657078|gb|AFO91044.1| putative ribonuclease D [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 385
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L + R
Sbjct: 116 GEQVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKR 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ SL TL+ + + K+ QFS+W NRPL +Q++YA D L+Q+ + L Q +
Sbjct: 111 TQSSLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLKEYLQQQLVK 169
>gi|167765134|ref|ZP_02437247.1| hypothetical protein BACSTE_03520 [Bacteroides stercoris ATCC
43183]
gi|167696762|gb|EDS13341.1| 3'-5' exonuclease [Bacteroides stercoris ATCC 43183]
Length = 210
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L PSQ YAA DA+ L +Y L +
Sbjct: 138 RSLQKIYAILFGEKISKSQRLSNWEADVLTPSQQQYAATDAWACLNIYNRLQE 190
>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
Length = 325
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 129 GLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTE 188
Query: 69 QG 70
G
Sbjct: 189 AG 190
>gi|153840116|ref|ZP_01992783.1| ribonuclease D, partial [Vibrio parahaemolyticus AQ3810]
gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
Length = 341
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 129 GLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTE 188
Query: 69 QG 70
G
Sbjct: 189 AG 190
>gi|400754205|ref|YP_006562573.1| ribonuclease D [Phaeobacter gallaeciensis 2.10]
gi|398653358|gb|AFO87328.1| putative ribonuclease D [Phaeobacter gallaeciensis 2.10]
Length = 385
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L + R
Sbjct: 116 GEQVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELKR 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|255086371|ref|XP_002509152.1| predicted protein [Micromonas sp. RCC299]
gi|226524430|gb|ACO70410.1| predicted protein [Micromonas sp. RCC299]
Length = 1227
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 58
GS LS++ G+ L+K+++ +W RPL SQ++Y A DA LL++
Sbjct: 622 HGSQPGLSSVCQALLGQPLDKRERCGDWSRRPLTESQVAYGAQDARVLLRI 672
>gi|357043134|ref|ZP_09104833.1| hypothetical protein HMPREF9138_01305 [Prevotella histicola F0411]
gi|355368730|gb|EHG16143.1| hypothetical protein HMPREF9138_01305 [Prevotella histicola F0411]
Length = 228
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN L Q YA+ DA+ +++Y+ LH+
Sbjct: 145 SLQKLYANVFHERITKREQLSNWENEILNDKQKIYASTDAWTCIKLYERLHE 196
>gi|352106222|ref|ZP_08961273.1| ribonuclease D [Halomonas sp. HAL1]
gi|350597870|gb|EHA13995.1| ribonuclease D [Halomonas sp. HAL1]
Length = 377
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
G+TL K++ SNW RPL P+Q YAALD LL+V+ +
Sbjct: 133 GETLPKEETRSNWLVRPLSPAQCHYAALDVIYLLKVWTL 171
>gi|365538247|ref|ZP_09363422.1| ribonuclease D [Vibrio ordalii ATCC 33509]
Length = 371
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G ++K + ++W RPL Q+ YAA D F LL +Y+ L D+ +
Sbjct: 113 GLSTGFAALVNEFLGIEVDKSESRTDWLARPLSQKQLDYAAADVFYLLPIYEKLLDKVTQ 172
Query: 69 QG 70
G
Sbjct: 173 AG 174
>gi|392377579|ref|YP_004984738.1| ribonuclease D [Azospirillum brasilense Sp245]
gi|356879060|emb|CCC99956.1| ribonuclease D [Azospirillum brasilense Sp245]
Length = 388
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K G ++K +F++W RPL Q++YA D L Y+ L + R
Sbjct: 112 GESVGYETLVTKLAGARIDKSSRFTDWSQRPLTERQLTYALSDVIHLRPAYEKLKRRLVR 171
Query: 69 QG 70
G
Sbjct: 172 SG 173
>gi|342179231|sp|A7HYE5.2|RND_PARL1 RecName: Full=Ribonuclease D; Short=RNase D
Length = 384
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G TLV K G +++K +F++W RPL Q+ YA D L +Y+VL
Sbjct: 112 GDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL 165
>gi|154253761|ref|YP_001414585.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
gi|154157711|gb|ABS64928.1| ribonuclease D [Parvibaculum lavamentivorans DS-1]
Length = 427
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G TLV K G +++K +F++W RPL Q+ YA D L +Y+VL
Sbjct: 155 GDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL 208
>gi|386313555|ref|YP_006009720.1| ribonuclease D [Shewanella putrefaciens 200]
gi|319426180|gb|ADV54254.1| ribonuclease D [Shewanella putrefaciens 200]
Length = 369
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV C G+ ++K + ++W RPL +Q++YAA D L Q+Y L +
Sbjct: 114 GHGVGYAKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVA 173
Query: 69 QG 70
QG
Sbjct: 174 QG 175
>gi|406962736|gb|EKD89001.1| hypothetical protein ACD_34C00239G0001 [uncultured bacterium]
Length = 380
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G+PQ L +L+ F L+K+ Q +NW RPL P + YA LD + L ++ L + +
Sbjct: 117 GAPQVGLGSLLQNYFDINLDKKYQRANWGLRPLPPEMLDYARLDTYYLFKLRDRLESELS 176
Query: 68 RQGI 71
G+
Sbjct: 177 NHGL 180
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L ++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEELIKRNL 178
>gi|156089519|ref|XP_001612166.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
gi|154799420|gb|EDO08598.1| 3'-5' exonuclease domain containing protein [Babesia bovis]
Length = 230
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 5 ESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
E Q P SL ++V + G L+K+ Q SNWE L QI YAA DA+ L + L
Sbjct: 151 EELQLRPCSLKSVVQRVLGLRLSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAFLKLKP 210
Query: 65 QCARQGI--ELG 74
+ R+ + ELG
Sbjct: 211 KSLRKLVVNELG 222
>gi|374299652|ref|YP_005051291.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
Length = 409
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+LV FG L+K + SNW RPL SQ+ YAA D L +Y +L QG
Sbjct: 143 SLVKALFGVELDKDETRSNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQG 197
>gi|407770436|ref|ZP_11117805.1| ribonuclease D [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286459|gb|EKF11946.1| ribonuclease D [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 389
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K K ++K +F++W +RPL Q+SYA D L +Y+ H++
Sbjct: 115 GDQVGYETLVNKVVRKNIDKSMRFTDWSHRPLSTKQLSYALSDVTHLRVIYEAFHERLEA 174
Query: 69 QG 70
G
Sbjct: 175 NG 176
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ LV L+K++Q SNWE RPL SQ+ YAALD L ++ + ++ ++ +
Sbjct: 120 SLTYLVDYYHKIKLSKKEQKSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEELIKRNL 178
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG---- 70
+ LV LNK ++W RPL +I YAA D L ++YQ++ D+ + G
Sbjct: 122 AMLVSHLLNVNLNKAHTRADWSKRPLTEEEIQYAADDVIYLCRIYQLMRDKLSALGRLDW 181
Query: 71 -----IELG-PLLTEVLSSHA 85
EL P L EVL HA
Sbjct: 182 LQPDFAELSNPALYEVLPEHA 202
>gi|294852115|ref|ZP_06792788.1| ribonuclease D [Brucella sp. NVSL 07-0026]
gi|294820704|gb|EFG37703.1| ribonuclease D [Brucella sp. NVSL 07-0026]
Length = 385
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K K L+K +F++W RPL Q+ YA D L +Y L ++ +
Sbjct: 112 GDAISYDQLVQKVTSKHLDKSSRFTDWRRRPLSDKQLDYALADVTYLRDIYLYLKEELQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|221503925|gb|EEE29602.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii VEG]
Length = 1048
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL + + L+K +Q SNW RPL SQ YAALDA+ L+ + L Q G
Sbjct: 942 SLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLILLEAALRRQGWIPGNI 1001
Query: 73 LGPL 76
LG L
Sbjct: 1002 LGGL 1005
>gi|350530651|ref|ZP_08909592.1| ribonuclease D [Vibrio rotiferianus DAT722]
Length = 382
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 122 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 181
Query: 68 RQG 70
G
Sbjct: 182 EAG 184
>gi|409436727|ref|ZP_11263897.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
gi|408751651|emb|CCM75051.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
Length = 381
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+ YA D L VY L + AR
Sbjct: 110 GDSVSYDQLVSRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAELAR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|383501632|ref|YP_005414991.1| ribonuclease D [Rickettsia australis str. Cutlack]
gi|378932643|gb|AFC71148.1| ribonuclease D [Rickettsia australis str. Cutlack]
Length = 281
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++YQ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYQELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|406883317|gb|EKD30934.1| hypothetical protein ACD_77C00446G0004 [uncultured bacterium]
Length = 200
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
S +S+ + G ++K Q SNWE L P QI+YAA+DA+ Q+Y
Sbjct: 138 SEKSVRKMAAIILGVRVSKSQQLSNWEADELSPGQINYAAIDAWVCQQMY 187
>gi|327314590|ref|YP_004330027.1| 3'-5' exonuclease [Prevotella denticola F0289]
gi|326944244|gb|AEA20129.1| 3'-5' exonuclease [Prevotella denticola F0289]
Length = 224
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN+ L Q YA+ DA+ + +Y+ LH+
Sbjct: 141 SLQKLYANVFHERITKREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE 192
>gi|288800138|ref|ZP_06405597.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299
str. F0039]
gi|288333386|gb|EFC71865.1| 3'-5' exonuclease domain protein [Prevotella sp. oral taxon 299
str. F0039]
Length = 210
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL L FG+ ++K+ + SNW++ L Q +YAA+DA+ +Q+Y+
Sbjct: 141 SLQKLYANVFGEKISKRQRLSNWDHEVLNDKQKTYAAIDAWACIQLYE 188
>gi|221482990|gb|EEE21314.1| 3'-5' exonuclease domain-containing protein, putative [Toxoplasma
gondii GT1]
Length = 1048
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL + + L+K +Q SNW RPL SQ YAALDA+ L+ + L Q G
Sbjct: 942 SLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLILLEAALRRQGWIPGNI 1001
Query: 73 LGPL 76
LG L
Sbjct: 1002 LGGL 1005
>gi|325856853|ref|ZP_08172351.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
gi|325483226|gb|EGC86203.1| 3'-5' exonuclease [Prevotella denticola CRIS 18C-A]
Length = 224
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN+ L Q YA+ DA+ + +Y+ LH+
Sbjct: 141 SLQKLYANVFHERITKREQLSNWENQILNDKQKLYASTDAWTCINLYERLHE 192
>gi|254461790|ref|ZP_05075206.1| ribonuclease D [Rhodobacterales bacterium HTCC2083]
gi|206678379|gb|EDZ42866.1| ribonuclease D [Rhodobacteraceae bacterium HTCC2083]
Length = 385
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + ++K +F++W RPL +Q YA D L QVY+ L +
Sbjct: 116 GEQVGYETLVRKIAKQEIDKSSRFTDWSRRPLSDAQAKYALADVTHLRQVYEFLAKKLKD 175
Query: 69 QG 70
QG
Sbjct: 176 QG 177
>gi|189460764|ref|ZP_03009549.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136]
gi|189432483|gb|EDV01468.1| hypothetical protein BACCOP_01411 [Bacteroides coprocola DSM 17136]
Length = 146
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + FGK ++K + SNWE L +Q YAA DA+ +++Y L D + G
Sbjct: 76 KSLQKIYALLFGKKISKSQRLSNWEAEVLTEAQQLYAATDAWACVEIYNYLDDLRSTGGY 135
Query: 72 EL 73
E+
Sbjct: 136 EI 137
>gi|392397230|ref|YP_006433831.1| ribonuclease D [Flexibacter litoralis DSM 6794]
gi|390528308|gb|AFM04038.1| ribonuclease D [Flexibacter litoralis DSM 6794]
Length = 449
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L +LV + L KQ+Q S+W RPL SQ+ YAA D L +++++L +
Sbjct: 172 LQSLVEEKLNIELEKQEQVSDWAKRPLSKSQLIYAATDVIYLFELFEILKKE 223
>gi|237844623|ref|XP_002371609.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49]
gi|211969273|gb|EEB04469.1| 3'-5' exonuclease domain-containing protein [Toxoplasma gondii ME49]
Length = 1045
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL + + L+K +Q SNW RPL SQ YAALDA+ L+ + L Q G
Sbjct: 939 SLQEMCRQVLHADLDKSEQRSNWNMRPLTASQAHYAALDAYVLILLEAALRRQGWIPGNI 998
Query: 73 LGPL 76
LG L
Sbjct: 999 LGGL 1002
>gi|348029631|ref|YP_004872317.1| ribonuclease D [Glaciecola nitratireducens FR1064]
gi|347946974|gb|AEP30324.1| ribonuclease D [Glaciecola nitratireducens FR1064]
Length = 388
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV K ++K + ++W RPL P Q+ YAA D F LL VY+ Q A
Sbjct: 113 GQTLGYANLVEKILDIHVDKGESRTDWIARPLSPEQLVYAAADVFHLLPVYR----QIAE 168
Query: 69 QGIELG 74
Q ELG
Sbjct: 169 QVEELG 174
>gi|443673262|ref|ZP_21138330.1| putative RNase D [Rhodococcus sp. AW25M09]
gi|443414077|emb|CCQ16668.1| putative RNase D [Rhodococcus sp. AW25M09]
Length = 433
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L +V + G L K ++W RPL S ++YAALD LL++ + D+ RQG
Sbjct: 150 LGAIVERTLGLALQKGHGAADWSTRPLPDSWLNYAALDVEVLLELRDAMADELERQG 206
>gi|373853941|ref|ZP_09596739.1| 3'-5' exonuclease [Opitutaceae bacterium TAV5]
gi|372471808|gb|EHP31820.1| 3'-5' exonuclease [Opitutaceae bacterium TAV5]
Length = 375
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ FG TL+K Q +NW RPL + YA+LD + L ++ +L + R G
Sbjct: 125 LAALLSDHFGVTLDKGGQKANWSRRPLTAKLLDYASLDVWHLFELRDILTRELGRLG 181
>gi|389581891|dbj|GAB64612.1| DNA binding protein [Plasmodium cynomolgi strain B]
Length = 430
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
P SL LV K L K + SNW + L+ QI YAA DA+ +VY VL
Sbjct: 134 PPSLQFLVKLFLKKNLEKHFRLSNWLSDDLKEEQILYAAADAYASREVYMVLK------- 186
Query: 71 IELGPLLTEVLSSHAVTTKKSTILYFSTV 99
ELG L + K+S +L S V
Sbjct: 187 -ELGKLKQSCVPKQPCVLKQSCVLKQSCV 214
>gi|302346700|ref|YP_003814998.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
gi|302150614|gb|ADK96875.1| 3'-5' exonuclease [Prevotella melaninogenica ATCC 25845]
Length = 217
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L F + + K++Q SNWEN L Q YA+ DA+ +++Y+ LH+ E
Sbjct: 141 SLQKLYANVFHERITKREQLSNWENEILSDKQKIYASTDAWTCIKLYERLHELKHSGNYE 200
Query: 73 LGPLLTEVLSSHAVTTK 89
L + +V + VT++
Sbjct: 201 LVVVPPKVKPTPEVTSE 217
>gi|84501108|ref|ZP_00999343.1| ribonuclease D [Oceanicola batsensis HTCC2597]
gi|84391175|gb|EAQ03593.1| ribonuclease D [Oceanicola batsensis HTCC2597]
Length = 385
Score = 43.5 bits (101), Expect = 0.019, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q YA D L ++Y+ L D+ R
Sbjct: 116 GEQVGYETLVKRIAKQQLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLADKLRR 175
Query: 69 QGIE 72
Q E
Sbjct: 176 QKRE 179
>gi|308473314|ref|XP_003098882.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
gi|308268021|gb|EFP11974.1| hypothetical protein CRE_31359 [Caenorhabditis remanei]
Length = 860
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
SL+ L + L+KQ Q ++W RPLR + I+YA D LL Y +L +Q +Q
Sbjct: 382 SLAYLAFRFADVILDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 438
>gi|297808445|ref|XP_002872106.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
lyrata]
gi|297317943|gb|EFH48365.1| hypothetical protein ARALYDRAFT_489298 [Arabidopsis lyrata subsp.
lyrata]
Length = 508
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 8 QGSPQSLSTLVLKC---FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ +P+ + +L C +L+K+ Q S+W RPL Q YAA DA CLLQ++ V
Sbjct: 147 RKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFKA 206
Query: 65 QCA---------RQGIELGPLLTEVLSSHAVTTKK 90
+ + L +LTE S + T K
Sbjct: 207 HLVEGITVQDSREKNVGLQEILTESDYSSKIVTAK 241
>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
Length = 381
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPL 76
G TL K D F++W RPL SQ+ YAA D L ++Y+ + Q +ELG L
Sbjct: 124 GVTLKKIDSFTDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQL----VELGRL 173
>gi|153005072|ref|YP_001379397.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
gi|152028645|gb|ABS26413.1| 3'-5' exonuclease [Anaeromyxobacter sp. Fw109-5]
Length = 296
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
LS LV FG L+K Q S+W RPL +Q++YAALD LL + +L
Sbjct: 121 GLSALVEAHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDML 170
>gi|288802306|ref|ZP_06407746.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
gi|288335273|gb|EFC73708.1| 3'-5' exonuclease domain protein [Prevotella melaninogenica D18]
Length = 224
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN L Q YA+ DA+ +++Y+ LH+
Sbjct: 141 SLQKLYANVFQERITKREQLSNWENEILSDKQKIYASTDAWTCIKLYERLHE 192
>gi|146306804|ref|YP_001187269.1| ribonuclease D [Pseudomonas mendocina ymp]
gi|145575005|gb|ABP84537.1| ribonuclease D [Pseudomonas mendocina ymp]
Length = 377
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV G L K + S+W RPL +QISYAA D L++VYQ L
Sbjct: 115 GFSMGYSRLVQTLLGIELPKGETRSDWLQRPLSATQISYAAEDVLHLVEVYQAL 168
>gi|294868076|ref|XP_002765369.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
gi|239865388|gb|EEQ98086.1| hypothetical protein Pmar_PMAR002368 [Perkinsus marinus ATCC 50983]
Length = 1005
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 6 SQQGSPQ---SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQ 57
S++GS + L+ +V GK L+K + SNW RPL Q+ YA+LDA LL+
Sbjct: 572 SRKGSSKHQRGLTEVVKYFLGKPLSKVMRLSNWRRRPLSYRQVEYASLDAIVLLK 626
>gi|410621252|ref|ZP_11332101.1| 3'-5' exonuclease [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410159256|dbj|GAC27475.1| 3'-5' exonuclease [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 212
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 24 KTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
K L+K Q SNW RPL P QI YA+ DA+ L Y D
Sbjct: 152 KKLSKIVQMSNWSARPLNPKQIQYASNDAYSALVTYMRFMD 192
>gi|302803390|ref|XP_002983448.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii]
gi|300148691|gb|EFJ15349.1| hypothetical protein SELMODRAFT_118353 [Selaginella moellendorffii]
Length = 200
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQF--SNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SLS+L + K ++K +WE +PL P+Q+SYAA DAF L +YQV ++
Sbjct: 140 SLSSLAEELTCKVIDKPTDIRCGDWELQPLSPAQLSYAATDAFASLHLYQVRNE 193
>gi|310815760|ref|YP_003963724.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
gi|385233276|ref|YP_005794618.1| ribonuclease D [Ketogulonicigenium vulgare WSH-001]
gi|308754495|gb|ADO42424.1| ribonuclease D [Ketogulonicigenium vulgare Y25]
gi|343462187|gb|AEM40622.1| Ribonuclease D [Ketogulonicigenium vulgare WSH-001]
Length = 388
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S TL K ++K +F++W RPL +Q YA D L Q+Y+ L Q A+
Sbjct: 115 GEQVSYETLARKIAKADIDKTSRFTDWSRRPLSEAQKEYALADVTHLRQIYENLSAQIAK 174
Query: 69 QG 70
G
Sbjct: 175 SG 176
>gi|188995460|ref|YP_001929712.1| 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
gi|334147267|ref|YP_004510196.1| 3'-5' exonuclease domain-containing protein [Porphyromonas
gingivalis TDC60]
gi|419970137|ref|ZP_14485647.1| 3'-5' exonuclease [Porphyromonas gingivalis W50]
gi|188595140|dbj|BAG34115.1| probable 3'-5' exonuclease [Porphyromonas gingivalis ATCC 33277]
gi|333804423|dbj|BAK25630.1| 3'-5' exonuclease domain-containing protein [Porphyromonas
gingivalis TDC60]
gi|392611552|gb|EIW94288.1| 3'-5' exonuclease [Porphyromonas gingivalis W50]
Length = 200
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL + FG+ ++K + +NWE R L +Q SYAALDA+ L+++ L
Sbjct: 137 SLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 186
>gi|24374123|ref|NP_718166.1| ribonuclease D Rnd [Shewanella oneidensis MR-1]
gi|24348616|gb|AAN55610.1| ribonuclease D Rnd [Shewanella oneidensis MR-1]
Length = 367
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+ LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L ++ Q
Sbjct: 118 AKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQ 172
>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|417320410|ref|ZP_12106956.1| ribonuclease D [Vibrio parahaemolyticus 10329]
gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
Length = 388
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 68 RQG 70
G
Sbjct: 188 EAG 190
>gi|433657124|ref|YP_007274503.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
gi|432507812|gb|AGB09329.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
Length = 388
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 68 RQG 70
G
Sbjct: 188 EAG 190
>gi|404401962|ref|ZP_10993546.1| ribonuclease D [Pseudomonas fuscovaginae UPB0736]
Length = 377
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV + G L K + S+W RPL +Q+SYAA DA L +VY L Q
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDALHLAEVYSRLRPQ 171
>gi|163792851|ref|ZP_02186827.1| Ribonuclease D [alpha proteobacterium BAL199]
gi|159181497|gb|EDP66009.1| Ribonuclease D [alpha proteobacterium BAL199]
Length = 386
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV G L+K +F++W +RPL QI YA D L Y+ LH + +
Sbjct: 112 GDAVSYDRLVRGLTGVKLDKTSRFTDWSHRPLSSRQIEYALADVIHLRPAYEKLHRKLEK 171
Query: 69 QG 70
G
Sbjct: 172 TG 173
>gi|118590153|ref|ZP_01547556.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
gi|118437125|gb|EAV43763.1| probable ribonuclease d protein [Stappia aggregata IAM 12614]
Length = 394
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G ++K +F++W RPL Q+ YA D L YQ L A
Sbjct: 112 GDSISYDQLVYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAYQFLKANLAE 171
Query: 69 Q 69
Q
Sbjct: 172 Q 172
>gi|302784546|ref|XP_002974045.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii]
gi|300158377|gb|EFJ25000.1| hypothetical protein SELMODRAFT_100501 [Selaginella moellendorffii]
Length = 200
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQF--SNWENRPLRPSQISYAALDAFCLLQVYQV 61
SLS+L + K ++K +WE +PL P+Q+SYAA DAF L +YQV
Sbjct: 140 SLSSLAEELTCKVIDKPTDIRCGDWELQPLSPAQLSYAATDAFASLHLYQV 190
>gi|182412681|ref|YP_001817747.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
gi|177839895|gb|ACB74147.1| 3'-5' exonuclease [Opitutus terrae PB90-1]
Length = 391
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L++L+ FG L+K+ Q +NW RPL + YAALD F L + +L + + G
Sbjct: 137 LASLLEDHFGVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLG 193
>gi|365118495|ref|ZP_09337059.1| hypothetical protein HMPREF1033_00405 [Tannerella sp.
6_1_58FAA_CT1]
gi|363649538|gb|EHL88649.1| hypothetical protein HMPREF1033_00405 [Tannerella sp.
6_1_58FAA_CT1]
Length = 209
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
SL + FGK ++K + SNWE L +Q YAA DA+ +++Y+ L +C
Sbjct: 141 SLQKIYAILFGKKISKSQRLSNWEADILSDAQKRYAATDAWACVRIYKSLSTEC 194
>gi|416158145|ref|ZP_11605584.1| ribonuclease D [Moraxella catarrhalis 101P30B1]
gi|416225038|ref|ZP_11626778.1| ribonuclease D [Moraxella catarrhalis 103P14B1]
gi|416229459|ref|ZP_11628056.1| ribonuclease D [Moraxella catarrhalis 46P47B1]
gi|416242581|ref|ZP_11633617.1| ribonuclease D [Moraxella catarrhalis BC7]
gi|416254805|ref|ZP_11638907.1| ribonuclease D [Moraxella catarrhalis O35E]
gi|326561643|gb|EGE11980.1| ribonuclease D [Moraxella catarrhalis 103P14B1]
gi|326562606|gb|EGE12917.1| ribonuclease D [Moraxella catarrhalis 46P47B1]
gi|326571165|gb|EGE21189.1| ribonuclease D [Moraxella catarrhalis BC7]
gi|326573455|gb|EGE23423.1| ribonuclease D [Moraxella catarrhalis 101P30B1]
gi|326577111|gb|EGE27005.1| ribonuclease D [Moraxella catarrhalis O35E]
Length = 407
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L+ + Q G Q+L+ ++ G ++K + SNW RPL Q +YAA D LL++Y+V
Sbjct: 129 LSGKLQAGYSQALNEML----GIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEV 184
Query: 62 LHDQCARQGI 71
+ + A +GI
Sbjct: 185 VRTELAARGI 194
>gi|416217690|ref|ZP_11624423.1| ribonuclease D [Moraxella catarrhalis 7169]
gi|416240506|ref|ZP_11632477.1| ribonuclease D [Moraxella catarrhalis BC1]
gi|416246669|ref|ZP_11635127.1| ribonuclease D [Moraxella catarrhalis BC8]
gi|421779889|ref|ZP_16216379.1| ribonuclease D [Moraxella catarrhalis RH4]
gi|326560439|gb|EGE10821.1| ribonuclease D [Moraxella catarrhalis 7169]
gi|326565826|gb|EGE15988.1| ribonuclease D [Moraxella catarrhalis BC1]
gi|326570481|gb|EGE20521.1| ribonuclease D [Moraxella catarrhalis BC8]
gi|407812683|gb|EKF83467.1| ribonuclease D [Moraxella catarrhalis RH4]
Length = 407
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L+ + Q G Q+L+ ++ G ++K + SNW RPL Q +YAA D LL++Y+V
Sbjct: 129 LSGKLQAGYSQALNEML----GIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEV 184
Query: 62 LHDQCARQGI 71
+ + A +GI
Sbjct: 185 VRTELAARGI 194
>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
Length = 372
Score = 43.1 bits (100), Expect = 0.023, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 68 RQG 70
G
Sbjct: 188 EAG 190
>gi|383812289|ref|ZP_09967727.1| 3'-5' exonuclease [Prevotella sp. oral taxon 306 str. F0472]
gi|383354849|gb|EID32395.1| 3'-5' exonuclease [Prevotella sp. oral taxon 306 str. F0472]
Length = 222
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN L Q YA+ DA+ +++Y+ LH+
Sbjct: 143 SLQKLYANVFHERIAKREQLSNWENEVLNDKQKLYASTDAWTCIKLYERLHE 194
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
S SL++L++K G T +K+ Q ++W RPL + YA D LL +Y +L + +
Sbjct: 314 SQHSLASLLIKFCGYTPDKRYQRADWRKRPLTNKMLEYARSDTHYLLYIYDMLRNTLIEK 373
Query: 70 GIELGPLLTEVL 81
+ +L +VL
Sbjct: 374 SSKKNDMLKDVL 385
>gi|307565057|ref|ZP_07627570.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A]
gi|307346226|gb|EFN91550.1| 3'-5' exonuclease domain protein [Prevotella amnii CRIS 21A-A]
Length = 153
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL + FGK + K++Q +NWEN L Q YA++DA+ + +Y+
Sbjct: 74 SLQKIYANIFGKKIVKREQLTNWENIELTDKQKQYASIDAWACINLYE 121
>gi|294955496|ref|XP_002788534.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983]
gi|239904075|gb|EER20330.1| hypothetical protein Pmar_PMAR010065 [Perkinsus marinus ATCC 50983]
Length = 663
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLL 56
SL V G L+K +Q S W +RPL SQ +YAALDA+ LL
Sbjct: 599 SLQRHVAGQLGAYLDKTEQCSEWADRPLSESQKNYAALDAYTLL 642
>gi|416249475|ref|ZP_11636572.1| ribonuclease D [Moraxella catarrhalis CO72]
gi|326575647|gb|EGE25570.1| ribonuclease D [Moraxella catarrhalis CO72]
Length = 407
Score = 43.1 bits (100), Expect = 0.024, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L+ + Q G Q+L+ ++ G ++K + SNW RPL Q +YAA D LL++Y+V
Sbjct: 129 LSGKLQAGYSQALNEML----GIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEV 184
Query: 62 LHDQCARQGI 71
+ + A +GI
Sbjct: 185 VRTELAARGI 194
>gi|91228923|ref|ZP_01262822.1| ribonuclease D, partial [Vibrio alginolyticus 12G01]
gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
Length = 277
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G ++LV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+ +
Sbjct: 126 GLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVTQ 185
Query: 69 QG 70
G
Sbjct: 186 AG 187
>gi|296113063|ref|YP_003627001.1| ribonuclease D [Moraxella catarrhalis RH4]
gi|416235897|ref|ZP_11630366.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
gi|295920757|gb|ADG61108.1| ribonuclease D [Moraxella catarrhalis BBH18]
gi|326563584|gb|EGE13838.1| ribonuclease D [Moraxella catarrhalis 12P80B1]
Length = 407
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L+ + Q G Q+L+ ++ G ++K + SNW RPL Q +YAA D LL++Y+V
Sbjct: 129 LSGKLQAGYSQALNEML----GIEIDKGESQSNWLARPLSYEQETYAANDVRYLLKLYEV 184
Query: 62 LHDQCARQGI 71
+ + A +GI
Sbjct: 185 VRTELAARGI 194
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ + FG L+K+ Q ++W RPL + YAA D LL + LHD+ ++G
Sbjct: 120 LAALLEQFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKG 176
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 9 GSPQS-LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G PQ+ L+ L+ FG L K+ Q NW RPL P ++YAA D LL++ ++L +
Sbjct: 123 GEPQTGLAPLLESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKE 180
>gi|34540197|ref|NP_904676.1| 3'-5' exonuclease [Porphyromonas gingivalis W83]
gi|34396509|gb|AAQ65575.1| 3'-5' exonuclease domain protein [Porphyromonas gingivalis W83]
Length = 188
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL + FG+ ++K + +NWE R L +Q SYAALDA+ L+++ L
Sbjct: 125 SLQKIYAILFGRRISKSQRLTNWEARTLTAAQQSYAALDAWACLRIFNQL 174
>gi|359407673|ref|ZP_09200148.1| ribonuclease D [SAR116 cluster alpha proteobacterium HIMB100]
gi|356677306|gb|EHI49652.1| ribonuclease D [SAR116 cluster alpha proteobacterium HIMB100]
Length = 387
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
LV GK+++K +F+NW RPL QI YAA D L ++Y + D
Sbjct: 124 LVQHYTGKSIDKSSRFTNWAERPLTDRQIKYAADDVIYLAEIYPRIVD 171
>gi|145345029|ref|XP_001417026.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577252|gb|ABO95319.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 497
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
L+ L + G L+K++Q S+W RPL SQ++YAA D + L ++ D+C
Sbjct: 213 LAVLTRQVIGCLLDKKEQCSDWGKRPLTESQMAYAAADGYSLCLIF----DKC 261
>gi|326513036|dbj|BAK03425.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+SL+++ + +L+K+ Q S+W RPL QI YAA DA+ LL ++ + H
Sbjct: 171 KSLASICEELLNVSLSKELQCSDWSCRPLSEGQIQYAASDAYYLLYIFDLFH 222
>gi|294940026|ref|XP_002782641.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983]
gi|239894493|gb|EER14436.1| hypothetical protein Pmar_PMAR021190 [Perkinsus marinus ATCC 50983]
Length = 1103
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLL 56
SL V G L+K +Q S W +RPL SQ +YAALDA+ LL
Sbjct: 1039 SLQRHVAGQLGAYLDKTEQCSEWADRPLSESQKNYAALDAYTLL 1082
>gi|254480593|ref|ZP_05093840.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
gi|214039176|gb|EEB79836.1| ribonuclease D [marine gamma proteobacterium HTCC2148]
Length = 373
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 16 TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
++VL+ + L K + S+W RPL SQ YAA D LL YQ++ ++C
Sbjct: 125 SMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERC 175
>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
Length = 281
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S + K G T++K Q SNW RP+ ++YA LD L ++YQ L++ R
Sbjct: 111 GKQLSYDDICYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVKYLYKIYQELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
Length = 354
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 68 RQG 70
G
Sbjct: 188 EAG 190
>gi|418054044|ref|ZP_12692100.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
gi|353211669|gb|EHB77069.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
Length = 384
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G L+K +F++W RPL P Q+ YA D L VY L +
Sbjct: 112 GDSISYVNLVKKTTGTDLDKSSRFTDWSRRPLSPKQLDYALADVTYLRDVYVRLRQTLDK 171
Query: 69 QGIELGPLLTEVLSSHAVTTKKST 92
E P L E + AV T +T
Sbjct: 172 T--ERTPWLQEEM---AVLTNPAT 190
>gi|110679520|ref|YP_682527.1| ribonuclease D [Roseobacter denitrificans OCh 114]
gi|109455636|gb|ABG31841.1| ribonuclease D [Roseobacter denitrificans OCh 114]
Length = 387
Score = 42.7 bits (99), Expect = 0.027, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + K L+K +F++W RPL +Q+ YA D L +VY+ L ++
Sbjct: 116 GEQVGYETLVRRIAKKPLDKTSRFTDWSRRPLTDAQMKYALADVTHLREVYEFLAEKLEE 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|118379202|ref|XP_001022768.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89304535|gb|EAS02523.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 645
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 13 SLSTLVLKCFGKTLNKQD----QFSNWENRPLRPSQISYAALDAFCLLQV-YQVLHDQCA 67
SL+ L+ K TL K++ Q S W +RPL Q++YAALD+ L+++ Y++LH+
Sbjct: 86 SLTYLLQKYCDYTLEKKEKKQLQLSEWSDRPLSEEQLNYAALDSHFLIKIRYELLHEMIK 145
Query: 68 R 68
R
Sbjct: 146 R 146
>gi|428314448|ref|YP_007125424.1| DNA polymerase I family protein [Microcoleus sp. PCC 7113]
gi|428256060|gb|AFZ22018.1| DNA polymerase I family protein with 3'-5'-exonuclease and
polymerase domains [Microcoleus sp. PCC 7113]
Length = 601
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G SL L +K +TL+K +Q NW + L SQ+ YAA DA LL + +L Q
Sbjct: 140 RGIDHSLEALSIKYLQQTLDKTEQTGNWSSGELTDSQLEYAARDAAILLPLSSILSQQLE 199
Query: 68 RQGI 71
G+
Sbjct: 200 AAGL 203
>gi|345888291|ref|ZP_08839391.1| hypothetical protein HMPREF0178_02165 [Bilophila sp. 4_1_30]
gi|345040888|gb|EGW45105.1| hypothetical protein HMPREF0178_02165 [Bilophila sp. 4_1_30]
Length = 176
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
Q L TL + G ++K Q SNW + L P Q+ YAA DA+ ++Y + +Q
Sbjct: 122 QGLRTLAAQLMGCRISKAAQCSNWAKKTLTPQQVRYAATDAWIGREIYLRMAEQ 175
>gi|424841170|ref|ZP_18265795.1| ribonuclease D [Saprospira grandis DSM 2844]
gi|395319368|gb|EJF52289.1| ribonuclease D [Saprospira grandis DSM 2844]
Length = 194
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
QQ ++L+ + L GK ++K Q SNWE PL +Q YAA DA+ L++Y + +
Sbjct: 136 QQMGARNLTAIFL---GKRISKSQQTSNWEREPLSQAQNFYAATDAYLGLKIYTLFEE 190
>gi|308509326|ref|XP_003116846.1| CRE-CRN-3 protein [Caenorhabditis remanei]
gi|308241760|gb|EFO85712.1| CRE-CRN-3 protein [Caenorhabditis remanei]
Length = 488
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
SL+ L + L+KQ Q ++W RPLR + I+YA D LL Y +L +Q +Q
Sbjct: 10 SLAYLAFRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 66
>gi|308802033|ref|XP_003078330.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
gi|116056782|emb|CAL53071.1| 3'-5' exonuclease, putative (ISS) [Ostreococcus tauri]
Length = 1013
Score = 42.7 bits (99), Expect = 0.029, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 2 LTDESQQGSPQSLSTLVLKC---------FGKTLNKQDQFSNWENRPLRPSQISYAALDA 52
L D Q S S + L+C G TL+K++Q S+W RPL QI+YAA D
Sbjct: 497 LVDVKQLAFASSPSKMSLRCGLAVLTRQVTGFTLDKKEQCSDWGKRPLTEGQIAYAAADG 556
Query: 53 FCLLQVYQVLHDQC 66
L ++ D+C
Sbjct: 557 HSLCLIF----DKC 566
>gi|451975380|ref|ZP_21926571.1| ribonuclease D [Vibrio alginolyticus E0666]
gi|451930692|gb|EMD78395.1| ribonuclease D [Vibrio alginolyticus E0666]
Length = 388
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G ++LV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 187
Query: 68 RQG 70
+ G
Sbjct: 188 QAG 190
>gi|372280705|ref|ZP_09516741.1| ribonuclease D [Oceanicola sp. S124]
Length = 386
Score = 42.7 bits (99), Expect = 0.030, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++L+K +F++W RPL +Q YA D L ++Y+ L Q +
Sbjct: 116 GEQVGYETLVRKIARESLDKSSRFTDWSRRPLTEAQKKYALADVTHLRKIYEYLSGQLKK 175
Query: 69 QG 70
G
Sbjct: 176 DG 177
>gi|345884427|ref|ZP_08835834.1| hypothetical protein HMPREF0666_02010 [Prevotella sp. C561]
gi|345042815|gb|EGW46908.1| hypothetical protein HMPREF0666_02010 [Prevotella sp. C561]
Length = 228
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN L Q YA+ DA+ +++Y+ LH+
Sbjct: 145 SLQKLYANVFHERIVKREQLSNWENEVLNDKQKLYASTDAWTCIKLYERLHE 196
>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
Length = 388
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G ++LV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 187
Query: 68 RQG 70
+ G
Sbjct: 188 QAG 190
>gi|120599067|ref|YP_963641.1| ribonuclease D [Shewanella sp. W3-18-1]
gi|120559160|gb|ABM25087.1| ribonuclease D [Shewanella sp. W3-18-1]
Length = 367
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ LV C G+ ++K + ++W RPL +Q++YAA D L Q+Y L + QG
Sbjct: 118 AKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQG 173
>gi|146292862|ref|YP_001183286.1| ribonuclease D [Shewanella putrefaciens CN-32]
gi|145564552|gb|ABP75487.1| ribonuclease D [Shewanella putrefaciens CN-32]
Length = 367
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ LV C G+ ++K + ++W RPL +Q++YAA D L Q+Y L + QG
Sbjct: 118 AKLVETCLGEVIDKGESRTDWIRRPLTEAQLAYAANDVLYLHQLYPQLEAKLVAQG 173
>gi|17229189|ref|NP_485737.1| hypothetical protein all1697 [Nostoc sp. PCC 7120]
gi|17135517|dbj|BAB78063.1| all1697 [Nostoc sp. PCC 7120]
Length = 302
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
QSL+ L+ C ++KQ+Q SNW RPL QI YA LD L Q+++ L
Sbjct: 126 QSLAKLL--CNFNNIDKQEQGSNWGQRPLSEEQIEYAYLDCIYLAQIHRRL 174
>gi|389694811|ref|ZP_10182905.1| ribonuclease D [Microvirga sp. WSM3557]
gi|388588197|gb|EIM28490.1| ribonuclease D [Microvirga sp. WSM3557]
Length = 386
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
++K +F++W RPL +Q++YA D L+QVY+ L Q + G
Sbjct: 131 IDKSSRFTDWSRRPLTDAQLTYALSDVTHLVQVYEALMAQLQKNG 175
>gi|402846843|ref|ZP_10895152.1| 3'-5' exonuclease [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267535|gb|EJU16930.1| 3'-5' exonuclease [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 186
Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
F + ++K + S+WE + L P+Q YAALDA+ L++Y L
Sbjct: 132 FAERMSKSQRMSDWEAKKLSPAQAHYAALDAWASLRIYTTL 172
>gi|395790953|ref|ZP_10470412.1| ribonuclease D [Bartonella alsatica IBS 382]
gi|395409249|gb|EJF75848.1| ribonuclease D [Bartonella alsatica IBS 382]
Length = 384
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 113 GDSISYDQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQ 169
>gi|158425285|ref|YP_001526577.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
gi|158332174|dbj|BAF89659.1| ribonuclease D [Azorhizobium caulinodans ORS 571]
Length = 383
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL +Q++YA D L VY+ L +
Sbjct: 112 GDSISYDQLVQRITGHAIDKSSRFTDWSRRPLSQAQLTYAVADVTHLRDVYKKLMEDLES 171
Query: 69 QG 70
+G
Sbjct: 172 RG 173
>gi|325269880|ref|ZP_08136490.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM
16608]
gi|324987853|gb|EGC19826.1| hypothetical protein HMPREF9141_1700 [Prevotella multiformis DSM
16608]
Length = 224
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K++Q SNWEN+ L Q YA+ DA+ + +Y+ LH+
Sbjct: 141 SLQKLYANVFHERITKREQLSNWENQILSDKQKLYASTDAWTCINLYERLHE 192
>gi|238650864|ref|YP_002916719.1| ribonuclease D [Rickettsia peacockii str. Rustic]
gi|238624962|gb|ACR47668.1| ribonuclease D [Rickettsia peacockii str. Rustic]
Length = 281
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|54308269|ref|YP_129289.1| ribonuclease D [Photobacterium profundum SS9]
gi|46912697|emb|CAG19487.1| hypothetical ribonuclease D [Photobacterium profundum SS9]
Length = 374
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +LV + G L K + +NW RPL Q+ YAA D F LL +Y+ L ++
Sbjct: 112 HGVSAGFGSLVSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVK 171
Query: 68 RQG 70
+G
Sbjct: 172 AKG 174
>gi|90411623|ref|ZP_01219633.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
gi|90327513|gb|EAS43866.1| hypothetical ribonuclease D [Photobacterium profundum 3TCK]
Length = 374
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +LV + G L K + +NW RPL Q+ YAA D F LL +Y+ L ++
Sbjct: 112 HGVSAGFGSLVSEYVGVDLEKGEARTNWLARPLTDKQLDYAAADVFYLLPLYETLLEKVK 171
Query: 68 RQG 70
+G
Sbjct: 172 AKG 174
>gi|338997813|ref|ZP_08636500.1| ribonuclease D [Halomonas sp. TD01]
gi|338765274|gb|EGP20219.1| ribonuclease D [Halomonas sp. TD01]
Length = 403
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY-------------QVLH 63
LV G+TL K++ SNW RPL SQ YAALD LL+V+ + L+
Sbjct: 153 LVEHWMGETLPKEETRSNWLERPLTLSQCEYAALDVIYLLKVWGFQAEKLEQLGRREWLN 212
Query: 64 DQCA 67
D+CA
Sbjct: 213 DECA 216
>gi|260576346|ref|ZP_05844337.1| ribonuclease D [Rhodobacter sp. SW2]
gi|259021417|gb|EEW24722.1| ribonuclease D [Rhodobacter sp. SW2]
Length = 385
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q YA D L VY+ L Q A+
Sbjct: 116 GEQVGYETLVKKIAKENLDKTSRFTDWSRRPLSEAQSDYALADVTHLRVVYESLAAQIAK 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
Length = 404
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 133 GDSISYDQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQ 189
>gi|126737525|ref|ZP_01753255.1| ribonuclease D [Roseobacter sp. SK209-2-6]
gi|126720918|gb|EBA17622.1| ribonuclease D [Roseobacter sp. SK209-2-6]
Length = 388
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++L+K +F++W RPL +Q +YA D L ++Y+ L + +
Sbjct: 116 GEQVGYETLVRKIAKQSLDKSSRFTDWSRRPLSGAQKTYALADVTHLRRIYEFLAKELEK 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|395787746|ref|ZP_10467338.1| ribonuclease D [Bartonella birtlesii LL-WM9]
gi|395410368|gb|EJF76923.1| ribonuclease D [Bartonella birtlesii LL-WM9]
Length = 420
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L +VY +L Q
Sbjct: 149 GDSISYDQIVQRCTGHKLDKSSRFTDWSCRPLSEKQLLYALADVTYLREVYLLLKKQ 205
>gi|157803677|ref|YP_001492226.1| ribonuclease D [Rickettsia canadensis str. McKiel]
gi|157784940|gb|ABV73441.1| Ribonuclease D [Rickettsia canadensis str. McKiel]
Length = 284
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K FG ++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLFGIAIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI------ELGPLL 77
+ LG LL
Sbjct: 171 SNLVNKYQTTLGSLL 185
>gi|54025710|ref|YP_119952.1| RNase D [Nocardia farcinica IFM 10152]
gi|54017218|dbj|BAD58588.1| putative RNase D [Nocardia farcinica IFM 10152]
Length = 424
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G+TL K ++W RPL ++YAALD LL++ + + RQG
Sbjct: 142 LAAMVERLLGRTLRKGHGAADWSTRPLPAEWLNYAALDVELLLELRDAVAAELQRQG 198
>gi|260592844|ref|ZP_05858302.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
gi|260535214|gb|EEX17831.1| 3'-5' exonuclease domain protein [Prevotella veroralis F0319]
Length = 220
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K+ Q SNWEN L Q YA+ DA+ +++Y+ LH+
Sbjct: 141 SLQKLYANVFHERITKRQQLSNWENEVLNDKQKLYASTDAWTCIKLYERLHE 192
>gi|262166840|ref|ZP_06034571.1| ribonuclease D [Vibrio cholerae RC27]
gi|379022859|ref|YP_005299520.1| ribonuclease D [Rickettsia canadensis str. CA410]
gi|262024728|gb|EEY43402.1| ribonuclease D [Vibrio cholerae RC27]
gi|376323797|gb|AFB21038.1| ribonuclease D [Rickettsia canadensis str. CA410]
Length = 284
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K FG ++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLFGIAIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 SNL 173
>gi|239946745|ref|ZP_04698498.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921021|gb|EER21045.1| ribonuclease D [Rickettsia endosymbiont of Ixodes scapularis]
Length = 281
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S + L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYNDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|121601718|ref|YP_989156.1| ribonuclease D [Bartonella bacilliformis KC583]
gi|421760967|ref|ZP_16197774.1| ribonuclease D [Bartonella bacilliformis INS]
gi|120613895|gb|ABM44496.1| ribonuclease D [Bartonella bacilliformis KC583]
gi|411173800|gb|EKS43841.1| ribonuclease D [Bartonella bacilliformis INS]
Length = 391
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V C G+ L+K +F++W RPL QI YA D L VY L Q
Sbjct: 112 GDSISYDQIVYHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQ 168
>gi|392560526|gb|EIW53709.1| ribonuclease H-like protein [Trametes versicolor FP-101664 SS1]
Length = 487
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 5 ESQQGSPQSLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
++ + S SL+ +V KTL+K + SNWE +PL SQ YAA DA C L VY L
Sbjct: 232 KAHKRSIVSLAKVVETYTQKTLSKGPVRTSNWETKPLSESQKFYAANDAHCALVVYNRLV 291
Query: 64 DQCARQGIELGP 75
G+ L P
Sbjct: 292 SLAEDAGLTLEP 303
>gi|269103055|ref|ZP_06155752.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
gi|268162953|gb|EEZ41449.1| ribonuclease D [Photobacterium damselae subsp. damselae CIP 102761]
Length = 382
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G LV + G L+K + +NW RPL Q++YAA D F LL +Y+ L ++
Sbjct: 112 HGVSTGFGALVKEYVGVELDKGEARTNWLARPLTDRQLNYAAADVFYLLPLYETLLEKVG 171
Query: 68 RQG 70
G
Sbjct: 172 AAG 174
>gi|84517066|ref|ZP_01004422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
gi|84508961|gb|EAQ05422.1| ribonuclease D [Loktanella vestfoldensis SKA53]
Length = 385
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++K +F++W RPL +Q YA D L VY+ L ++ A+
Sbjct: 116 GEQAGYETLVRKIAKAEVDKSSRFTDWSRRPLTDAQAEYALADVTHLRDVYEYLANRLAK 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|317051081|ref|YP_004112197.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
gi|316946165|gb|ADU65641.1| 3'-5' exonuclease [Desulfurispirillum indicum S5]
Length = 213
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L TL FGK L+K+ + S+W + L QI YAA DA+ ++Y L+ +Q
Sbjct: 146 GLRTLCALLFGKRLSKKARCSDWSRKHLSAEQIKYAAADAWISRELYMALNSLLEKQNAS 205
Query: 73 LGPLLT 78
P+++
Sbjct: 206 AEPMVS 211
>gi|339252698|ref|XP_003371572.1| exosome component 10 [Trichinella spiralis]
gi|316968157|gb|EFV52483.1| exosome component 10 [Trichinella spiralis]
Length = 827
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 11 PQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
PQ SL LV + G L+K Q ++W RPL ++YA D+ LL + VL +Q +
Sbjct: 364 PQRSLKFLVKELVGVNLDKSYQTADWRIRPLGSKMLAYARSDSHYLLYCWDVLRNQLLNR 423
Query: 70 GIELGPLLTEVLSSHAVT 87
G E L+ VL + T
Sbjct: 424 GNEYNDLMMIVLKRSSDT 441
>gi|119384625|ref|YP_915681.1| ribonuclease D [Paracoccus denitrificans PD1222]
gi|119374392|gb|ABL69985.1| ribonuclease D [Paracoccus denitrificans PD1222]
Length = 401
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W +RPL +Q +YA D L +Y+ L Q +
Sbjct: 133 GEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDK 192
Query: 69 QGIELGPLLTE 79
G P L E
Sbjct: 193 TG--RAPWLAE 201
>gi|196232584|ref|ZP_03131436.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
gi|196223346|gb|EDY17864.1| 3'-5' exonuclease [Chthoniobacter flavus Ellin428]
Length = 352
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
SL+ L+ + F L K Q +NW RPL P YA D LL++ +L + R
Sbjct: 113 SLAALIKRYFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTR 168
>gi|409078186|gb|EKM78550.1| hypothetical protein AGABI1DRAFT_92822 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1353
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 14 LSTLVLKCFGKTLNKQDQFSN---WENRPLRPSQISYAALDAFCLLQVYQVL 62
LS +VL GK LNK WENR L QISYAALDA+ L +Y+ L
Sbjct: 692 LSAIVL---GKRLNKNTPLRTSQAWENRVLSDEQISYAALDAYASLLIYEEL 740
>gi|403530625|ref|YP_006665154.1| ribonuclease D [Bartonella quintana RM-11]
gi|403232696|gb|AFR26439.1| ribonuclease D [Bartonella quintana RM-11]
Length = 419
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 148 GDSISYDQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQ 204
>gi|157964642|ref|YP_001499466.1| ribonuclease D [Rickettsia massiliae MTU5]
gi|157844418|gb|ABV84919.1| Ribonuclease D [Rickettsia massiliae MTU5]
Length = 284
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 114 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 173
Query: 69 QGI 71
+
Sbjct: 174 NNL 176
>gi|379713763|ref|YP_005302101.1| ribonuclease D [Rickettsia massiliae str. AZT80]
gi|383481663|ref|YP_005390578.1| ribonuclease D [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|376334409|gb|AFB31641.1| ribonuclease D [Rickettsia massiliae str. AZT80]
gi|378934002|gb|AFC72505.1| ribonuclease D [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 281
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|399910265|ref|ZP_10778579.1| ribonuclease D [Halomonas sp. KM-1]
Length = 376
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+TL K + S+W RPL SQ YAALD LL+V++ H+ R
Sbjct: 130 GETLPKDETRSDWLQRPLSESQRLYAALDVVYLLKVWERQHEALER 175
>gi|281420237|ref|ZP_06251236.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205]
gi|281405732|gb|EFB36412.1| 3'-5' exonuclease domain protein [Prevotella copri DSM 18205]
Length = 205
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+ SL L F + ++K + SNWE L+ SQ YAA DA+C + +Y+ A
Sbjct: 137 ADMSLQKLYANLFHQKISKAQRLSNWEASDLKESQALYAATDAWCCINLYEEFKRLSATG 196
Query: 70 GIELGPL 76
EL L
Sbjct: 197 DYELDEL 203
>gi|384260875|ref|YP_005416061.1| Ribonuclease D [Rhodospirillum photometricum DSM 122]
gi|378401975|emb|CCG07091.1| Ribonuclease D [Rhodospirillum photometricum DSM 122]
Length = 386
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV ++K +F++W RPL P Q+ YA D L VYQ L +Q
Sbjct: 112 GDSVGYETLVSSLTRARIDKSMRFTDWSRRPLTPRQVEYALGDVIHLRTVYQRLQEQLTV 171
Query: 69 QG 70
G
Sbjct: 172 SG 173
>gi|341583944|ref|YP_004764435.1| ribonuclease D [Rickettsia heilongjiangensis 054]
gi|340808170|gb|AEK74758.1| ribonuclease D [Rickettsia heilongjiangensis 054]
Length = 281
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|319898851|ref|YP_004158944.1| Ribonuclease D [Bartonella clarridgeiae 73]
gi|319402815|emb|CBI76366.1| Ribonuclease D [Bartonella clarridgeiae 73]
Length = 385
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S +V +C G L+K +F++W RPL Q+ YA D L VY L Q +
Sbjct: 112 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLTLKKQLEK 171
Query: 69 Q 69
+
Sbjct: 172 K 172
>gi|242048348|ref|XP_002461920.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
gi|241925297|gb|EER98441.1| hypothetical protein SORBIDRAFT_02g010640 [Sorghum bicolor]
Length = 505
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+T+ + L+K+ Q S+W RPL QI YAA DA+ LL ++ + + +G
Sbjct: 185 KSLATICEELLSVFLSKELQCSDWSCRPLSEGQIQYAASDAYYLLGIFDLFQKKITMEG 243
>gi|350273593|ref|YP_004884906.1| ribonuclease D [Rickettsia japonica YH]
gi|348592806|dbj|BAK96767.1| ribonuclease D [Rickettsia japonica YH]
Length = 281
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|255261512|ref|ZP_05340854.1| ribonuclease D [Thalassiobium sp. R2A62]
gi|255103847|gb|EET46521.1| ribonuclease D [Thalassiobium sp. R2A62]
Length = 385
Score = 42.0 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K L+K +F++W RPL +Q YA D L ++Y+ L D+ A+
Sbjct: 116 GEQVGYETLVRKIAKAPLDKSSRFTDWSRRPLSDAQKKYALGDVTYLREIYEFLADKLAK 175
>gi|384489817|gb|EIE81039.1| hypothetical protein RO3G_05744 [Rhizopus delemar RA 99-880]
Length = 326
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 31 QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGP---LLTEVLSSHAVT 87
+ SNW L P+Q YAALDA+ Q+YQ + ++GIE P LL + LS+ V
Sbjct: 235 RMSNWSAPVLSPNQKKYAALDAYASYQIYQTI----KKEGIENVPIEHLLHQNLSTPKVE 290
Query: 88 TKKST 92
K T
Sbjct: 291 KKPKT 295
>gi|308049432|ref|YP_003912998.1| ribonuclease D [Ferrimonas balearica DSM 9799]
gi|307631622|gb|ADN75924.1| ribonuclease D [Ferrimonas balearica DSM 9799]
Length = 374
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G L+ G L+K + ++W RPL Q++YAA D + LLQVY+++
Sbjct: 117 GGAMGYGKLIHHYLGLELDKGEARTDWLKRPLSEKQLTYAAADVYYLLQVYRMMRPAIEE 176
Query: 69 QG 70
G
Sbjct: 177 MG 178
>gi|313674143|ref|YP_004052139.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
gi|312940841|gb|ADR20031.1| 3'-5' exonuclease [Marivirga tractuosa DSM 4126]
Length = 194
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
Q ++L+ + L K ++K Q SNWE L +QI YAA DA+ L+VY+V
Sbjct: 137 QSGAKNLTAIFL---NKRISKAQQTSNWEKSELTQAQIDYAATDAYLGLKVYEVFE 189
>gi|313205201|ref|YP_004043858.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
gi|312444517|gb|ADQ80873.1| 3'-5' exonuclease [Paludibacter propionicigenes WB4]
Length = 231
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
FGK ++K + +NWEN L Q YAA DA+ LQ+Y
Sbjct: 147 FGKKISKSQRLTNWENPELTEQQQRYAATDAWASLQIY 184
>gi|67459201|ref|YP_246825.1| ribonuclease D [Rickettsia felis URRWXCal2]
gi|67004734|gb|AAY61660.1| Ribonuclease D [Rickettsia felis URRWXCal2]
Length = 281
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|379731252|ref|YP_005323448.1| 3'-5' exonuclease [Saprospira grandis str. Lewin]
gi|378576863|gb|AFC25864.1| 3'-5' exonuclease [Saprospira grandis str. Lewin]
Length = 194
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
QQ ++L+ + L GK ++K Q SNWE PL +Q YAA DA+ L++Y +
Sbjct: 136 QQMGARNLTAIFL---GKRISKSQQTSNWEREPLSQAQNFYAATDAYLGLKIYTLFQ 189
>gi|401398319|ref|XP_003880270.1| hypothetical protein NCLIV_007100 [Neospora caninum Liverpool]
gi|325114680|emb|CBZ50235.1| hypothetical protein NCLIV_007100 [Neospora caninum Liverpool]
Length = 1189
Score = 42.0 bits (97), Expect = 0.047, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLL 56
SL + + L+K +Q SNW RPL SQ YAALDA+ L+
Sbjct: 1044 SLQEMCRQVLHADLDKAEQRSNWNMRPLTVSQTRYAALDAYVLI 1087
>gi|238063529|ref|ZP_04608238.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
gi|237885340|gb|EEP74168.1| 3'-5' exonuclease [Micromonospora sp. ATCC 39149]
Length = 442
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G +L K ++W +RPL S ++YAALD L + L + ARQG
Sbjct: 166 LAALTEQLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELARQG 222
>gi|339444858|ref|YP_004710862.1| ribonuclease D [Eggerthella sp. YY7918]
gi|338904610|dbj|BAK44461.1| ribonuclease D [Eggerthella sp. YY7918]
Length = 381
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G TL K D F++W RPL SQ+ YAA D L ++Y+ + Q
Sbjct: 124 GVTLKKIDSFTDWSRRPLSESQLEYAADDVVYLPRMYERMRGQ 166
>gi|254466167|ref|ZP_05079578.1| ribonuclease D [Rhodobacterales bacterium Y4I]
gi|206687075|gb|EDZ47557.1| ribonuclease D [Rhodobacterales bacterium Y4I]
Length = 385
Score = 42.0 bits (97), Expect = 0.048, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L ++Y+ L + +
Sbjct: 116 GEQAGYETLVRKIVKQGLDKTSRFTDWSRRPLSEAQKTYALADVTHLRKIYEFLAAELEK 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|383482302|ref|YP_005391216.1| ribonuclease D [Rickettsia montanensis str. OSU 85-930]
gi|378934656|gb|AFC73157.1| ribonuclease D [Rickettsia montanensis str. OSU 85-930]
Length = 281
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|209964842|ref|YP_002297757.1| ribonuclease D [Rhodospirillum centenum SW]
gi|209958308|gb|ACI98944.1| ribonuclease D, putative [Rhodospirillum centenum SW]
Length = 385
Score = 42.0 bits (97), Expect = 0.049, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TL+ K ++K +F++W RPL Q+SYA D L Y+ L + A+
Sbjct: 112 GDSVGYETLITKLTSARIDKSSRFTDWSQRPLTERQLSYALSDVTHLRPAYEKLRRRLAK 171
Query: 69 QGIE 72
G E
Sbjct: 172 TGRE 175
>gi|395766197|ref|ZP_10446774.1| ribonuclease D [Bartonella sp. DB5-6]
gi|395409707|gb|EJF76293.1| ribonuclease D [Bartonella sp. DB5-6]
Length = 384
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L +Y +L Q
Sbjct: 113 GDSISYDQIVQRCTGHQLDKSSRFTDWSYRPLSEKQLLYALADVTYLRDIYLLLKKQ 169
>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
Length = 388
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G ++LV + G L+K + ++W RPL Q+ YAA D LL +Y+ L D+
Sbjct: 128 HGLSTGFASLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 68 RQG 70
+ G
Sbjct: 188 QAG 190
>gi|354593277|ref|ZP_09011322.1| ribonuclease D [Commensalibacter intestini A911]
gi|353673342|gb|EHD15036.1| ribonuclease D [Commensalibacter intestini A911]
Length = 391
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G+ +LV G ++K +FS+W RPL +Q YAA D L VYQVL
Sbjct: 121 GNQIGYDSLVDSLLGVAIDKSHRFSDWAMRPLTAAQQHYAAADVTYLWDVYQVL 174
>gi|302383325|ref|YP_003819148.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
gi|302193953|gb|ADL01525.1| ribonuclease D [Brevundimonas subvibrioides ATCC 15264]
Length = 382
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + L+K +F++W RPL +Q++YA D L +Y L D+ AR
Sbjct: 111 GDQVAYDGLVRQMLKIDLDKGSRFTDWSRRPLSDAQLTYAIGDVTHLAALYPKLRDRLAR 170
Query: 69 QG 70
+G
Sbjct: 171 EG 172
>gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor]
Length = 239
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQ--FSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L LV + G + K S W RPL P Q+ YAA+DAF +V ++L
Sbjct: 160 GLKALVREVMGVVMEKPKHVTMSRWSRRPLSPEQVRYAAIDAFVSYEVGRLL 211
>gi|429332849|ref|ZP_19213559.1| ribonuclease D [Pseudomonas putida CSV86]
gi|428762403|gb|EKX84607.1| ribonuclease D [Pseudomonas putida CSV86]
Length = 377
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV + G L K + S+W RPL +Q+SYAA DA L ++Y+ L Q
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSQTQVSYAAEDAVHLAELYERLRPQ 171
>gi|260433597|ref|ZP_05787568.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
gi|260417425|gb|EEX10684.1| ribonuclease D [Silicibacter lacuscaerulensis ITI-1157]
Length = 424
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L + +
Sbjct: 155 GEQVGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEK 214
Query: 69 QG 70
G
Sbjct: 215 TG 216
>gi|56697032|ref|YP_167394.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
gi|56678769|gb|AAV95435.1| ribonuclease D [Ruegeria pomeroyi DSS-3]
Length = 385
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L A+
Sbjct: 116 GEQVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAK 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|15964944|ref|NP_385297.1| ribonuclease D protein [Sinorhizobium meliloti 1021]
gi|384528902|ref|YP_005712990.1| ribonuclease D [Sinorhizobium meliloti BL225C]
gi|384536902|ref|YP_005720987.1| ribonuclease D protein [Sinorhizobium meliloti SM11]
gi|433612962|ref|YP_007189760.1| ribonuclease D [Sinorhizobium meliloti GR4]
gi|15074123|emb|CAC45770.1| Probable ribonuclease D [Sinorhizobium meliloti 1021]
gi|333811078|gb|AEG03747.1| ribonuclease D [Sinorhizobium meliloti BL225C]
gi|336033794|gb|AEH79726.1| ribonuclease D protein [Sinorhizobium meliloti SM11]
gi|429551152|gb|AGA06161.1| ribonuclease D [Sinorhizobium meliloti GR4]
Length = 383
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + ++K +F++W RPL Q+ YA D L +YQ L + R
Sbjct: 110 GDSVSYDQLVNRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|334315734|ref|YP_004548353.1| ribonuclease D [Sinorhizobium meliloti AK83]
gi|407720134|ref|YP_006839796.1| ribonuclease D [Sinorhizobium meliloti Rm41]
gi|418401289|ref|ZP_12974820.1| ribonuclease D [Sinorhizobium meliloti CCNWSX0020]
gi|334094728|gb|AEG52739.1| ribonuclease D [Sinorhizobium meliloti AK83]
gi|359504807|gb|EHK77338.1| ribonuclease D [Sinorhizobium meliloti CCNWSX0020]
gi|407318366|emb|CCM66970.1| Ribonuclease D [Sinorhizobium meliloti Rm41]
Length = 383
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + ++K +F++W RPL Q+ YA D L +YQ L + R
Sbjct: 110 GDSVSYDQLVNRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYQYLTKELDR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|291299881|ref|YP_003511159.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
gi|290569101|gb|ADD42066.1| 3'-5' exonuclease [Stackebrandtia nassauensis DSM 44728]
Length = 407
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ LV K G TL K ++W RPL ++YAALD L+++ +L + QG
Sbjct: 137 LAALVEKLLGFTLEKHHSAADWSTRPLPADWLTYAALDVELLVELRDILDAELRLQG 193
>gi|256375684|ref|YP_003099344.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
gi|255919987|gb|ACU35498.1| 3'-5' exonuclease [Actinosynnema mirum DSM 43827]
Length = 414
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L TLV G L K ++W RPL ++YAALD L+Q+ VL ++ +QG
Sbjct: 140 ALGTLVELLLGYRLEKGHGAADWSRRPLPADWLNYAALDVELLVQLRDVLEEELRQQG 197
>gi|319404161|emb|CBI77754.1| Ribonuclease D [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 42.0 bits (97), Expect = 0.052, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY L Q
Sbjct: 112 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQ 168
>gi|392545413|ref|ZP_10292550.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
rubra ATCC 29570]
Length = 377
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G+ + +V L+K ++W RPL+ SQ+ YAA D F LL Y+ L + A
Sbjct: 112 EGNCVGFANMVKMMLDVELDKSMSRTDWLKRPLQASQLEYAAADVFYLLPCYESLSKKIA 171
Query: 68 RQGI 71
+G+
Sbjct: 172 EKGL 175
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|34581576|ref|ZP_00143056.1| ribonuclease D [Rickettsia sibirica 246]
gi|383484103|ref|YP_005393016.1| ribonuclease D [Rickettsia parkeri str. Portsmouth]
gi|28262961|gb|EAA26465.1| ribonuclease D [Rickettsia sibirica 246]
gi|378936457|gb|AFC74957.1| ribonuclease D [Rickettsia parkeri str. Portsmouth]
Length = 281
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ +++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKEINNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|388599678|ref|ZP_10158074.1| ribonuclease D [Vibrio campbellii DS40M4]
Length = 372
Score = 41.6 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 112 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 68 RQG 70
G
Sbjct: 172 EAG 174
>gi|319901369|ref|YP_004161097.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
gi|319416400|gb|ADV43511.1| 3'-5' exonuclease [Bacteroides helcogenes P 36-108]
Length = 220
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + FG+ ++K + SNWE L SQ YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYGILFGEKISKSQRLSNWEADMLSESQKQYAATDAWACLNIYNRLQELKRTGDF 197
Query: 72 ELGP 75
E+ P
Sbjct: 198 EIAP 201
>gi|427383689|ref|ZP_18880409.1| hypothetical protein HMPREF9447_01442 [Bacteroides oleiciplenus YIT
12058]
gi|425728394|gb|EKU91252.1| hypothetical protein HMPREF9447_01442 [Bacteroides oleiciplenus YIT
12058]
Length = 215
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQELKTTGDY 197
Query: 72 ELGPLLTEVLSSH 84
EL P E L++H
Sbjct: 198 ELAP--DEPLANH 208
>gi|335035213|ref|ZP_08528556.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
gi|333793644|gb|EGL64998.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
Length = 388
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
Length = 382
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 122 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 181
Query: 68 RQG 70
G
Sbjct: 182 EAG 184
>gi|229586838|ref|YP_002845339.1| Ribonuclease D [Rickettsia africae ESF-5]
gi|228021888|gb|ACP53596.1| Ribonuclease D [Rickettsia africae ESF-5]
Length = 281
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ +++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKEINNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|444428716|ref|ZP_21224024.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238052|gb|ELU49683.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 372
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 112 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 68 RQG 70
G
Sbjct: 172 EAG 174
>gi|436735997|ref|YP_007318125.1| DNA-directed DNA polymerase [Gloeocapsa sp. PCC 7428]
gi|428267598|gb|AFZ33542.1| DNA-directed DNA polymerase [Gloeocapsa sp. PCC 7428]
Length = 598
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
SL ++ K G LNK Q SN+ L Q+ YAA+DA LL +Y +LH +
Sbjct: 135 SLKSVASKLLGVKLNKSLQHSNFAQAELTSQQLRYAAIDAAILLDLYPILHGR 187
>gi|424033629|ref|ZP_17773042.1| ribonuclease D [Vibrio cholerae HENC-01]
gi|408874288|gb|EKM13462.1| ribonuclease D [Vibrio cholerae HENC-01]
Length = 372
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 112 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 68 RQG 70
G
Sbjct: 172 EAG 174
>gi|319407179|emb|CBI80818.1| Ribonuclease D [Bartonella sp. 1-1C]
Length = 383
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY L Q
Sbjct: 112 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVSDVTYLRDVYLALKKQ 168
>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
gi|424036272|ref|ZP_17775343.1| ribonuclease D [Vibrio cholerae HENC-02]
gi|424047109|ref|ZP_17784670.1| ribonuclease D [Vibrio cholerae HENC-03]
gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
gi|408884407|gb|EKM23151.1| ribonuclease D [Vibrio cholerae HENC-03]
gi|408896827|gb|EKM32789.1| ribonuclease D [Vibrio cholerae HENC-02]
Length = 372
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 112 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 68 RQG 70
G
Sbjct: 172 EAG 174
>gi|395789430|ref|ZP_10468950.1| ribonuclease D [Bartonella taylorii 8TBB]
gi|395429973|gb|EJF96025.1| ribonuclease D [Bartonella taylorii 8TBB]
Length = 384
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L +Y +L Q
Sbjct: 113 GDSISYDQIVQRCTGHQLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQ 169
>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
Length = 372
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G +TLV + G L+K + ++W RPL Q+ YAA D L+ +Y+ L D+
Sbjct: 112 HGLSTGFATLVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 68 RQG 70
+ G
Sbjct: 172 QAG 174
>gi|414075695|ref|YP_006995013.1| 3'-5' exonuclease [Anabaena sp. 90]
gi|413969111|gb|AFW93200.1| 3'-5' exonuclease [Anabaena sp. 90]
Length = 304
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 LSTLVLK-CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
L TL K C +NKQ+Q S+W RPL QI YA LD L QV+
Sbjct: 125 LKTLATKLCNFHDINKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQVH 171
>gi|259416057|ref|ZP_05739977.1| ribonuclease D [Silicibacter sp. TrichCH4B]
gi|259347496|gb|EEW59273.1| ribonuclease D [Silicibacter sp. TrichCH4B]
Length = 385
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L + +
Sbjct: 116 GEQVGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKELDK 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|88705065|ref|ZP_01102777.1| ribonuclease D [Congregibacter litoralis KT71]
gi|88700760|gb|EAQ97867.1| ribonuclease D [Congregibacter litoralis KT71]
Length = 370
Score = 41.6 bits (96), Expect = 0.058, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L+K + S+W RPL SQ YAALD L+ +++L + QG
Sbjct: 121 LVKELLGVELDKGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQG 174
>gi|159037106|ref|YP_001536359.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
gi|157915941|gb|ABV97368.1| 3'-5' exonuclease [Salinispora arenicola CNS-205]
Length = 451
Score = 41.6 bits (96), Expect = 0.060, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L G +L K ++W +RPL S ++YAALD L+++ L + RQG
Sbjct: 174 LAALTEHLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALEAELTRQG 230
>gi|221052342|ref|XP_002257747.1| dna binding protein [Plasmodium knowlesi strain H]
gi|193807578|emb|CAQ38083.1| dna binding protein, putative [Plasmodium knowlesi strain H]
Length = 470
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
P SL LV K L K + SNW + L+ QI YAA DA+ +VY VL +
Sbjct: 222 PPSLQFLVKLFLKKNLEKHFRLSNWLSHDLKEEQILYAAADAYASREVYMVLKE 275
>gi|114562909|ref|YP_750422.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
gi|114334202|gb|ABI71584.1| ribonuclease D [Shewanella frigidimarina NCIMB 400]
Length = 370
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+ LV C ++K + ++W NRPL +Q+ YAA D F L Q+Y L + A
Sbjct: 120 AKLVDACLQVEIDKGESRTDWMNRPLSDAQLQYAANDVFYLYQLYPQLQQKLA 172
>gi|451942118|ref|YP_007462755.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901505|gb|AGF75967.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 384
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G ++K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 113 GDSISYDQIVQRCTGHHIDKSSRFTDWSYRPLSEKQLLYALADVTYLRDVYLLLKKQ 169
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 41.6 bits (96), Expect = 0.061, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|237721388|ref|ZP_04551869.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449184|gb|EEO54975.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 219
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQELKQTGDW 197
Query: 72 ELGPLLTEVLSSHAVTTKK 90
E+ PL V + V + K
Sbjct: 198 EVSPLTATVSPAEEVISNK 216
>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
gi|81647819|sp|Q6G329.1|RND_BARHE RecName: Full=Ribonuclease D; Short=RNase D
gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
Length = 406
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 135 GDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQ 191
>gi|294677027|ref|YP_003577642.1| ribonuclease D [Rhodobacter capsulatus SB 1003]
gi|294475847|gb|ADE85235.1| ribonuclease D-2 [Rhodobacter capsulatus SB 1003]
Length = 384
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++L+K +F++W RPL +Q +YA D L +Y+ L + +
Sbjct: 115 GEQVGYETLVKKIAKQSLDKTSRFTDWSRRPLTDAQKAYALADVTHLRVIYEFLSKELRK 174
Query: 69 QGIE 72
G E
Sbjct: 175 SGRE 178
>gi|302866117|ref|YP_003834754.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
gi|315502675|ref|YP_004081562.1| 3'-5' exonuclease [Micromonospora sp. L5]
gi|302568976|gb|ADL45178.1| 3'-5' exonuclease [Micromonospora aurantiaca ATCC 27029]
gi|315409294|gb|ADU07411.1| 3'-5' exonuclease [Micromonospora sp. L5]
Length = 439
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G +L K ++W +RPL S ++YAALD L+ + L ++ RQG
Sbjct: 166 LAALTEQLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVDLRDSLDEELQRQG 222
>gi|389877692|ref|YP_006371257.1| Ribonuclease D [Tistrella mobilis KA081020-065]
gi|388528476|gb|AFK53673.1| Ribonuclease D [Tistrella mobilis KA081020-065]
Length = 422
Score = 41.6 bits (96), Expect = 0.062, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G TLV K +++K +F++W RPL P QI+YA D L VY
Sbjct: 110 GESVGYETLVNKLAKASIDKSSRFTDWSRRPLTPKQIAYALADVTHLRTVY 160
>gi|350563555|ref|ZP_08932376.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
gi|349778690|gb|EGZ33041.1| ribonuclease D [Thioalkalimicrobium aerophilum AL3]
Length = 390
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S + L+ K G+ +NK + W +RPL Q+ YAA D + L Q Y +L
Sbjct: 114 GDQASYARLIEKLCGENINKDQARTQWLDRPLLDEQLEYAAADVWHLAQAYPIL 167
>gi|160887119|ref|ZP_02068122.1| hypothetical protein BACOVA_05135 [Bacteroides ovatus ATCC 8483]
gi|293370879|ref|ZP_06617424.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
gi|299148614|ref|ZP_07041676.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
gi|336414892|ref|ZP_08595235.1| hypothetical protein HMPREF1017_02343 [Bacteroides ovatus
3_8_47FAA]
gi|423288786|ref|ZP_17267637.1| hypothetical protein HMPREF1069_02680 [Bacteroides ovatus
CL02T12C04]
gi|423295051|ref|ZP_17273178.1| hypothetical protein HMPREF1070_01843 [Bacteroides ovatus
CL03T12C18]
gi|156107530|gb|EDO09275.1| 3'-5' exonuclease [Bacteroides ovatus ATCC 8483]
gi|292634095|gb|EFF52639.1| 3'-5' exonuclease [Bacteroides ovatus SD CMC 3f]
gi|298513375|gb|EFI37262.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_23]
gi|335941753|gb|EGN03604.1| hypothetical protein HMPREF1017_02343 [Bacteroides ovatus
3_8_47FAA]
gi|392669984|gb|EIY63470.1| hypothetical protein HMPREF1069_02680 [Bacteroides ovatus
CL02T12C04]
gi|392674074|gb|EIY67524.1| hypothetical protein HMPREF1070_01843 [Bacteroides ovatus
CL03T12C18]
Length = 219
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQELKQTGDW 197
Query: 72 ELGPLLTEVLSSHAVTTKK 90
E+ PL V + V + K
Sbjct: 198 EVSPLTATVSPAEEVISNK 216
>gi|443289631|ref|ZP_21028725.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
gi|385887246|emb|CCH16799.1| 3'-5' exonuclease [Micromonospora lupini str. Lupac 08]
Length = 441
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G TL K ++W +RPL S ++YAALD L + L + RQG
Sbjct: 166 LAALTEQLLGFTLEKHHSAADWSSRPLPESWLTYAALDVEMLTDLRDALDAELTRQG 222
>gi|409422781|ref|ZP_11259865.1| ribonuclease D [Pseudomonas sp. HYS]
Length = 377
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV + G L K + S+W RPL +Q+SYAA DA L ++Y+ L Q
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELYERLRPQ 171
>gi|383114532|ref|ZP_09935294.1| hypothetical protein BSGG_1297 [Bacteroides sp. D2]
gi|313693762|gb|EFS30597.1| hypothetical protein BSGG_1297 [Bacteroides sp. D2]
Length = 219
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQELKQTGDW 197
Query: 72 ELGPLLTEVLSSHAVTTKK 90
E+ PL V + V + K
Sbjct: 198 EVSPLTATVSPAEEVMSNK 216
>gi|17509615|ref|NP_493360.1| Protein W05H12.2 [Caenorhabditis elegans]
gi|3880545|emb|CAB04921.1| Protein W05H12.2 [Caenorhabditis elegans]
Length = 329
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
Q S SL L L+ G LNK++ S+W LR QI YA +DA L +Y
Sbjct: 261 QPRSMPSLKQLALEVTGIILNKEESLSDWVREVLRIDQIHYACMDAVILHHIY 313
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 41.6 bits (96), Expect = 0.063, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ + K FG L+K+ Q ++W RP P I YA D L+++Y L D+ +G
Sbjct: 150 LAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKG 206
>gi|393767902|ref|ZP_10356446.1| ribonuclease D [Methylobacterium sp. GXF4]
gi|392726713|gb|EIZ84034.1| ribonuclease D [Methylobacterium sp. GXF4]
Length = 395
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q+SYA D L++VY+VL
Sbjct: 113 GDSVSYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLVKVYEVL 166
>gi|433603682|ref|YP_007036051.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
gi|407881535|emb|CCH29178.1| 3'-5' exonuclease [Saccharothrix espanaensis DSM 44229]
Length = 428
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L TLV + G L K ++W RPL ++YAALD L+++ VL + +QG
Sbjct: 140 ALGTLVERLLGYRLEKGHGAADWSRRPLPADWLNYAALDVELLVELRDVLEAELKKQG 197
>gi|92113585|ref|YP_573513.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
gi|91796675|gb|ABE58814.1| ribonuclease D [Chromohalobacter salexigens DSM 3043]
Length = 375
Score = 41.6 bits (96), Expect = 0.065, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 5 ESQQGSPQSL--STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+S G+ SL LV G L K++ S+W RPL +Q+ YAALD L ++++
Sbjct: 112 QSLLGTQASLGYQRLVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQ 171
Query: 63 HDQCARQG 70
D R+G
Sbjct: 172 RDALMREG 179
>gi|428304463|ref|YP_007141288.1| 3'-5' exonuclease [Crinalium epipsammum PCC 9333]
gi|428245998|gb|AFZ11778.1| 3'-5' exonuclease [Crinalium epipsammum PCC 9333]
Length = 307
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 73
L TLV + L+K +Q SNW RPL Q+ Y +D + Q++ L D R
Sbjct: 125 LKTLVTELCDINLDKSEQGSNWGRRPLTAKQLQYVKMDTVYVAQIHSRLQDLMTRC---Y 181
Query: 74 GPLLTEVLSSHAV 86
P+ TE L + AV
Sbjct: 182 PPIETEDLEALAV 194
>gi|395215204|ref|ZP_10400856.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
gi|394455924|gb|EJF10318.1| 3'-5' exonuclease [Pontibacter sp. BAB1700]
Length = 395
Score = 41.6 bits (96), Expect = 0.066, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 58
SL+T++ + F K ++K Q SNW RPL Q+ YAA+D L ++
Sbjct: 127 SLATVLKEEFDKEIDKSQQSSNWNKRPLTEDQLRYAAIDVIYLHKI 172
>gi|428301369|ref|YP_007139675.1| 3'-5' exonuclease [Calothrix sp. PCC 6303]
gi|428237913|gb|AFZ03703.1| 3'-5' exonuclease [Calothrix sp. PCC 6303]
Length = 303
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
C ++K Q S+W RPL QI YA LD L QVYQ L D
Sbjct: 133 CNFTDIDKLQQTSDWAQRPLTDEQIDYAYLDCIYLAQVYQALLD 176
>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
Length = 384
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV K G L+K ++W RPL QI YAA D L ++YQ L + R
Sbjct: 114 GDQMGYAKLVEKICGVQLDKSQSRTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELER 173
Query: 69 QG 70
G
Sbjct: 174 LG 175
>gi|410616461|ref|ZP_11327453.1| ribonuclease D [Glaciecola polaris LMG 21857]
gi|410164170|dbj|GAC31591.1| ribonuclease D [Glaciecola polaris LMG 21857]
Length = 385
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV G ++K + ++W RPL P Q YAA D L Q+Y L D+
Sbjct: 113 GPSLGYAKLVETMLGVQVDKGESRTDWLARPLSPEQCQYAAYDVLYLFQLYPALRDKTIA 172
Query: 69 Q 69
Q
Sbjct: 173 Q 173
>gi|374623203|ref|ZP_09695717.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
gi|373942318|gb|EHQ52863.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
Length = 381
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ G L K ++W RPL P Q++YAA D L Q Y ++ D R G
Sbjct: 122 LIQAVLGVELEKGHSRTDWARRPLDPEQLTYAADDVRYLAQAYPLIRDALERSG 175
>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+ YA D L VY+ L A
Sbjct: 112 GDSISYDQLVQRITGARIDKSSRFTDWARRPLTQKQLDYALADVTYLRDVYRFLKANLAE 171
Query: 69 Q 69
Q
Sbjct: 172 Q 172
>gi|145594075|ref|YP_001158372.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
gi|145303412|gb|ABP53994.1| 3'-5' exonuclease [Salinispora tropica CNB-440]
Length = 451
Score = 41.6 bits (96), Expect = 0.068, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L G +L K ++W +RPL S ++YAALD L+++ L + RQG
Sbjct: 174 LAALTENLLGFSLEKHHSAADWSSRPLPESWLTYAALDVELLVELRDALDAELTRQG 230
>gi|197105155|ref|YP_002130532.1| ribonuclease D [Phenylobacterium zucineum HLK1]
gi|196478575|gb|ACG78103.1| ribonuclease D [Phenylobacterium zucineum HLK1]
Length = 392
Score = 41.6 bits (96), Expect = 0.069, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + ++K +F++W RPL SQ++YA D L ++Y +L + R
Sbjct: 111 GEQIAYDALVRQMLKIEIDKSSRFTDWARRPLSDSQLTYALADVTHLAKLYPLLRQRLER 170
Query: 69 QG 70
+G
Sbjct: 171 EG 172
>gi|189467792|ref|ZP_03016577.1| hypothetical protein BACINT_04184 [Bacteroides intestinalis DSM
17393]
gi|189436056|gb|EDV05041.1| 3'-5' exonuclease [Bacteroides intestinalis DSM 17393]
Length = 210
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQELKISGDY 197
Query: 72 ELGPLLTE 79
EL P TE
Sbjct: 198 ELAPDETE 205
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 41.6 bits (96), Expect = 0.070, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
TL+K +Q SNWE RPL+ Q+ YAALD L ++ + + R+ +
Sbjct: 132 TLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSL 178
>gi|374319417|ref|YP_005065916.1| Ribonuclease D [Rickettsia slovaca 13-B]
gi|383751408|ref|YP_005426509.1| ribonuclease D [Rickettsia slovaca str. D-CWPP]
gi|360041966|gb|AEV92348.1| Ribonuclease D [Rickettsia slovaca 13-B]
gi|379774422|gb|AFD19778.1| ribonuclease D [Rickettsia slovaca str. D-CWPP]
Length = 281
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ +++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKEVNNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|303284465|ref|XP_003061523.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456853|gb|EEH54153.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 161
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 3 TDESQQGSPQSLSTLVLKCFGKTLNKQD--QFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
+D ++ SL+ LV G+ L K + + S+WE L Q YAALDAF L+VYQ
Sbjct: 100 SDAAKGPRAFSLAALVEWTLGRALPKTNSARISDWEAPVLSEEQQRYAALDAFAGLKVYQ 159
Query: 61 VL 62
L
Sbjct: 160 AL 161
>gi|398964229|ref|ZP_10680176.1| ribonuclease D [Pseudomonas sp. GM30]
gi|398148804|gb|EJM37472.1| ribonuclease D [Pseudomonas sp. GM30]
Length = 377
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF--------- 165
Query: 69 QGIELGPLLTE 79
++LGP L++
Sbjct: 166 --VQLGPKLSD 174
>gi|88857337|ref|ZP_01131980.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
tunicata D2]
gi|88820534|gb|EAR30346.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
tunicata D2]
Length = 375
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ +V + G T++K + +NW RPL SQ+ YAA D F LL ++ + + G
Sbjct: 116 GFAIMVERFLGLTIDKSESRTNWLQRPLSASQLEYAAGDVFYLLPCFEKIRAEIEALG 173
>gi|83942499|ref|ZP_00954960.1| ribonuclease D [Sulfitobacter sp. EE-36]
gi|83846592|gb|EAP84468.1| ribonuclease D [Sulfitobacter sp. EE-36]
Length = 385
Score = 41.2 bits (95), Expect = 0.074, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q YA D L Q+Y+ L + +
Sbjct: 116 GEQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQ 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|15892619|ref|NP_360333.1| ribonuclease D [Rickettsia conorii str. Malish 7]
gi|15619787|gb|AAL03234.1| ribonuclease D [Rickettsia conorii str. Malish 7]
Length = 281
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ +++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKEVNNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|83953718|ref|ZP_00962439.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
gi|83841663|gb|EAP80832.1| ribonuclease D [Sulfitobacter sp. NAS-14.1]
Length = 385
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q YA D L Q+Y+ L + +
Sbjct: 116 GEQVGYETLVRKIAHQPLDKTSRFTDWSRRPLSDAQAKYALADVTHLRQIYEFLARKLEQ 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|348578015|ref|XP_003474779.1| PREDICTED: Werner syndrome ATP-dependent helicase-like [Cavia
porcellus]
Length = 1486
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL+ LV FGK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 176 SLNGLVKHLFGKQLLKDKSVRCSNWSNFPLSEDQKLYAATDAYAGLIIYQKLE 228
>gi|329956986|ref|ZP_08297554.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056]
gi|328523743|gb|EGF50835.1| 3'-5' exonuclease [Bacteroides clarus YIT 12056]
Length = 210
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + F + ++K + SNWE L PSQ YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEAEVLTPSQQQYAATDAWACLNIYNRLQE 190
>gi|289740869|gb|ADD19182.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
Length = 568
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFS--NWENRPLRPSQISYAALDAFCLLQVYQVL 62
P+ L+ L L TL+K + S NWE + L QI YAA DAF ++++++L
Sbjct: 171 PEGLAKLSLSVLKVTLDKHWRLSCSNWEAKDLTEKQIEYAANDAFVAVEIFKIL 224
>gi|134098409|ref|YP_001104070.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
gi|291003374|ref|ZP_06561347.1| ribonuclease D [Saccharopolyspora erythraea NRRL 2338]
gi|133911032|emb|CAM01145.1| putative ribonuclease D (partial match) [Saccharopolyspora
erythraea NRRL 2338]
Length = 419
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
SL LV + G L K ++W RPL ++YAALD L+ + + +H + RQ
Sbjct: 142 SLGALVERMLGYRLEKGHSAADWSRRPLPADWLAYAALDVELLVALREAMHAELERQ 198
>gi|383312776|ref|YP_005365577.1| ribonuclease D [Candidatus Rickettsia amblyommii str. GAT-30V]
gi|378931436|gb|AFC69945.1| ribonuclease D [Candidatus Rickettsia amblyommii str. GAT-30V]
Length = 281
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L+ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELNHVIIR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|440789808|gb|ELR11100.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 223
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
L +L GK + K SNW + L P Q+SYAA DAF L +Y+ L
Sbjct: 59 GLQSLAQDLLGKHVAKGKARSNWGSDQLTPGQLSYAATDAFATLLIYKQLE 109
>gi|254502050|ref|ZP_05114201.1| ribonuclease D [Labrenzia alexandrii DFL-11]
gi|222438121|gb|EEE44800.1| ribonuclease D [Labrenzia alexandrii DFL-11]
Length = 392
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G ++K +F++W RPL Q+ YA D L +Q L A
Sbjct: 112 GDSISYDQLVYKVTGARIDKSSRFTDWARRPLTAKQLDYALADVTHLRDAFQFLKANLAE 171
Query: 69 Q 69
Q
Sbjct: 172 Q 172
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+L G T K+ Q ++W +RPL I YA D LL +Y ++ + R+
Sbjct: 266 SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRESTF 325
Query: 73 LGPLLTEV 80
LL EV
Sbjct: 326 ENDLLLEV 333
>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
Length = 386
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 15 STLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
S LV + G +L+K + SNW RPL P +I YA D L ++YQ+L+D G
Sbjct: 121 SRLVEQFLGISLDKLSLKRSNWMLRPLSPDKIQYALNDVIYLHELYQILYDNLVDSG 177
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 41.2 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|94987515|ref|YP_595448.1| ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
gi|442556368|ref|YP_007366193.1| 3'-5' exonuclease domain protein [Lawsonia intracellularis N343]
gi|94731764|emb|CAJ55127.1| Ribonuclease D [Lawsonia intracellularis PHE/MN1-00]
gi|441493815|gb|AGC50509.1| 3'-5' exonuclease domain protein [Lawsonia intracellularis N343]
Length = 198
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
Q Q L TL G ++K Q SNWE + L P Q+ YAA DA+ ++Y
Sbjct: 139 QLKAQGLRTLAANILGCRVSKAVQCSNWEKKELSPQQVLYAATDAWVGRELY 190
>gi|296004476|ref|XP_001350990.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
gi|224591370|emb|CAD49018.2| DNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 448
Score = 41.2 bits (95), Expect = 0.084, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
P SL +LV K L+K+ + SNW N L QI YAA+DA+ Q+Y
Sbjct: 214 PPSLQSLVKIYLNKFLDKKFRLSNWLNYSLLQEQILYAAVDAYASRQIY 262
>gi|423713103|ref|ZP_17687363.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395424729|gb|EJF90909.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 384
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G ++K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 113 GDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQ 169
>gi|329850483|ref|ZP_08265328.1| ribonuclease D [Asticcacaulis biprosthecum C19]
gi|328840798|gb|EGF90369.1| ribonuclease D [Asticcacaulis biprosthecum C19]
Length = 417
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + +LV + ++K +F++W RPL Q+ YA D L ++Y L D+ AR
Sbjct: 111 GDQVAYDSLVRQKLKIDIDKGSRFTDWSRRPLSDQQLQYALGDVTHLAKLYPKLRDRLAR 170
Query: 69 QG 70
+G
Sbjct: 171 EG 172
>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
Length = 386
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + +T++K +F++W RPL +Q +YA D L VY+ L + A
Sbjct: 117 GEQVGYETLVKRIAKQTVDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKLAS 176
Query: 69 QG 70
G
Sbjct: 177 SG 178
>gi|395793332|ref|ZP_10472737.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395431646|gb|EJF97664.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 384
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G ++K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 113 GDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKKQ 169
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|452752255|ref|ZP_21951998.1| Ribonuclease D -like protein [alpha proteobacterium JLT2015]
gi|451960331|gb|EMD82744.1| Ribonuclease D -like protein [alpha proteobacterium JLT2015]
Length = 205
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L L + G+ ++KQ Q S+W L +Q+ YAA D L ++ QVL ++ AR+G
Sbjct: 115 HGLRDLARETIGQDISKQQQSSDWGAPRLTDAQVEYAASDVRYLHEIKQVLDERLAREG 173
>gi|326388611|ref|ZP_08210204.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
gi|326206862|gb|EGD57686.1| 3'-5' exonuclease [Novosphingobium nitrogenifigens DSM 19370]
Length = 205
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L LV + GK ++KQ Q S+W L +Q+ YAA D L + VL D+ AR+G
Sbjct: 115 HGLKELVRELAGKEISKQQQSSDWGGANLSDAQLEYAASDVRYLHTCHAVLVDRLAREG 173
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+L G T K+ Q ++W +RPL I YA D LL +Y ++ + R+
Sbjct: 266 SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRESTF 325
Query: 73 LGPLLTEV 80
LL EV
Sbjct: 326 ENDLLLEV 333
>gi|90419527|ref|ZP_01227437.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
gi|90336464|gb|EAS50205.1| ribonuclease D [Aurantimonas manganoxydans SI85-9A1]
Length = 385
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + ++K +F++W RPL Q++YA D L VY+ L Q A
Sbjct: 114 GESIAYDQLVARTTDGRIDKTSRFTDWRRRPLSDQQLAYALADVTYLRDVYRFLSAQLAE 173
Query: 69 QG 70
+G
Sbjct: 174 KG 175
>gi|85000709|ref|XP_955073.1| 3'-5' exonuclease [Theileria annulata strain Ankara]
gi|65303219|emb|CAI75597.1| 3'-5' exonuclease, putative [Theileria annulata]
Length = 790
Score = 41.2 bits (95), Expect = 0.088, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWEN---------RPLRPSQISYAALDAFCLLQVYQVL 62
QSL+ LV K F LNK+ Q SNW RPL + YA D+ L+ +Y L
Sbjct: 590 QSLAKLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTL 649
Query: 63 HDQ 65
D+
Sbjct: 650 KDE 652
>gi|261880482|ref|ZP_06006909.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332821|gb|EFA43607.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 253
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL L FGK ++K+ + SNWE L Q YAA+DA+ + +Y+
Sbjct: 141 SLQKLYANFFGKKISKRQRLSNWEAAVLSDKQKQYAAIDAWSCIHLYE 188
>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium fabrum str. C58]
gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium fabrum str. C58]
Length = 388
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|82753264|ref|XP_727606.1| ribonuclease D [Plasmodium yoelii yoelii 17XNL]
gi|23483534|gb|EAA19171.1| Ribonuclease D [Plasmodium yoelii yoelii]
Length = 510
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
P SL LV K K L+K+ + SNW + L QI YAA D++ +VY L Q
Sbjct: 255 PPSLQNLVKKYLKKHLDKEYRLSNWLCKNLNEEQIMYAANDSYASREVYISLEKQ 309
>gi|254514489|ref|ZP_05126550.1| ribonuclease D [gamma proteobacterium NOR5-3]
gi|219676732|gb|EED33097.1| ribonuclease D [gamma proteobacterium NOR5-3]
Length = 372
Score = 41.2 bits (95), Expect = 0.090, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
G L+K + S+W RPL SQ YAALD L+ +++L D QG
Sbjct: 126 LGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQG 174
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 41.2 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + G ++K +F++W RPL Q+ YA D L VY L + R
Sbjct: 110 GDSVSYDQLVNRTKGVQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
Length = 389
Score = 41.2 bits (95), Expect = 0.091, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV ++K +F++W RPL +Q+SYA D L++VY+ L Q
Sbjct: 113 GDSVSYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLSYALSDVTHLIKVYEALARQ 169
>gi|300784546|ref|YP_003764837.1| ribonuclease D [Amycolatopsis mediterranei U32]
gi|384147815|ref|YP_005530631.1| ribonuclease D [Amycolatopsis mediterranei S699]
gi|399536431|ref|YP_006549093.1| ribonuclease D [Amycolatopsis mediterranei S699]
gi|299794060|gb|ADJ44435.1| ribonuclease D [Amycolatopsis mediterranei U32]
gi|340525969|gb|AEK41174.1| ribonuclease D [Amycolatopsis mediterranei S699]
gi|398317201|gb|AFO76148.1| ribonuclease D [Amycolatopsis mediterranei S699]
Length = 407
Score = 41.2 bits (95), Expect = 0.092, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L TLV G TL K ++W RPL ++YAALD L+Q+ + L + QG
Sbjct: 133 ALGTLVELLLGYTLEKGHSAADWSKRPLPVDWLNYAALDVELLIQLREKLEAELGAQG 190
>gi|163746426|ref|ZP_02153784.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
gi|161380311|gb|EDQ04722.1| ribonuclease D [Oceanibulbus indolifex HEL-45]
Length = 385
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L +
Sbjct: 116 GEQVGYETLVRKIAHQALDKTSRFTDWSRRPLTDAQKTYALADVTHLRQIYEFLARKLEE 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
Length = 388
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQKIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLSLKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|89094008|ref|ZP_01166952.1| ribonuclease D [Neptuniibacter caesariensis]
gi|89081682|gb|EAR60910.1| ribonuclease D [Oceanospirillum sp. MED92]
Length = 397
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G L ++ C L K + SNW RPL SQ YAALD L +Y++ +
Sbjct: 129 GFSMGLQRMLESCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLS 188
Query: 69 QG 70
+G
Sbjct: 189 RG 190
>gi|429769081|ref|ZP_19301206.1| ribonuclease D [Brevundimonas diminuta 470-4]
gi|429187954|gb|EKY28848.1| ribonuclease D [Brevundimonas diminuta 470-4]
Length = 384
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + L+K +F++W RPL +Q++YA D L +Y L D+ +
Sbjct: 112 GDQVSYEALVRQMLRQELDKGSRFTDWARRPLSDAQLTYALGDVTHLSALYPKLRDRLQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|329890110|ref|ZP_08268453.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
gi|328845411|gb|EGF94975.1| ribonuclease D [Brevundimonas diminuta ATCC 11568]
Length = 384
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + L+K +F++W RPL +Q++YA D L +Y L D+ +
Sbjct: 112 GDQVSYEALVRQMLRQELDKGSRFTDWARRPLSDAQLTYALGDVTHLSALYPKLRDRLQK 171
Query: 69 QG 70
+G
Sbjct: 172 EG 173
>gi|37523316|ref|NP_926693.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter violaceus PCC 7421]
Length = 195
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 6 SQQGSPQ--SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
S++G+ + SL L G L+K+ Q SNW RPL Q+ YAALD + +++
Sbjct: 121 SRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWE 177
>gi|398377727|ref|ZP_10535899.1| ribonuclease D, partial [Rhizobium sp. AP16]
gi|397726334|gb|EJK86772.1| ribonuclease D, partial [Rhizobium sp. AP16]
Length = 207
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L +Q R
Sbjct: 110 GDSVSYDQLVSRIKNIQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLSLKEQLER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|152965548|ref|YP_001361332.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
gi|151360065|gb|ABS03068.1| 3'-5' exonuclease [Kineococcus radiotolerans SRS30216]
Length = 427
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L +V + G L K+ +W RPL ++YAALD L+QV L ++ A
Sbjct: 136 GLPRVGLGAVVEELLGLRLAKEHSAVDWSTRPLPEPWLTYAALDVEVLVQVRDALAERLA 195
Query: 68 RQGIELGPLLTEVLSSHAVTTKKSTILYFSTVSGLD-TKEHRQLCL 112
QG +L L E + + VSGL + RQL +
Sbjct: 196 AQG-KLEWALEEFAAVADAPAPVPPAEPWRRVSGLHAVRSRRQLAV 240
>gi|428770946|ref|YP_007162736.1| 3'-5' exonuclease [Cyanobacterium aponinum PCC 10605]
gi|428685225|gb|AFZ54692.1| 3'-5' exonuclease [Cyanobacterium aponinum PCC 10605]
Length = 517
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L+ E S + L TL G T+ + +Q S+W RPL QI YA +D L QV+Q
Sbjct: 224 LSLEQLGTSNRQLKTLASYLCGFTIEENEQGSDWAMRPLTEKQIKYAVMDIIFLTQVHQK 283
Query: 62 L 62
L
Sbjct: 284 L 284
>gi|395766735|ref|ZP_10447273.1| ribonuclease D [Bartonella doshiae NCTC 12862]
gi|395415347|gb|EJF81781.1| ribonuclease D [Bartonella doshiae NCTC 12862]
Length = 383
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L +
Sbjct: 112 GDSISYEQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLLKQK 168
>gi|423196701|ref|ZP_17183284.1| ribonuclease D [Aeromonas hydrophila SSU]
gi|404632155|gb|EKB28784.1| ribonuclease D [Aeromonas hydrophila SSU]
Length = 370
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G LV + G TL K ++W RPL P Q+ YAA D F LL +Y
Sbjct: 110 HGVSVGFGALVNEFLGVTLEKDQARTDWLARPLTPRQLEYAAADVFYLLPLY 161
>gi|451940751|ref|YP_007461389.1| ribonuclease D [Bartonella australis Aust/NH1]
gi|451900138|gb|AGF74601.1| ribonuclease D [Bartonella australis Aust/NH1]
Length = 383
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY L Q
Sbjct: 112 GDSISYDQIVQRCTGHRLDKSSRFTDWSCRPLSKKQLLYALADVTHLRDVYISLKKQ 168
>gi|339017958|ref|ZP_08644103.1| ribonuclease D [Acetobacter tropicalis NBRC 101654]
gi|338752961|dbj|GAA07407.1| ribonuclease D [Acetobacter tropicalis NBRC 101654]
Length = 437
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +LV G ++K +F++W RPL P+Q++YAA D L VY+ L
Sbjct: 160 GDQVGYDSLVGSLTGHAIDKSHRFTDWSVRPLTPAQLTYAAGDVTWLRLVYERL 213
>gi|298291118|ref|YP_003693057.1| ribonuclease D [Starkeya novella DSM 506]
gi|296927629|gb|ADH88438.1| ribonuclease D [Starkeya novella DSM 506]
Length = 385
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G S LV + G+ L+K +F++W RPL +QI+YA D L V+ L
Sbjct: 111 HGDSISYDQLVQRITGEVLDKSLRFTDWSRRPLSAAQIAYAEADVTHLRDVFLKLDADLK 170
Query: 68 RQG 70
++G
Sbjct: 171 KRG 173
>gi|78048167|ref|YP_364342.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78036597|emb|CAJ24288.1| ribonuclease D [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 363
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQG 172
>gi|254474856|ref|ZP_05088242.1| ribonuclease D [Ruegeria sp. R11]
gi|214029099|gb|EEB69934.1| ribonuclease D [Ruegeria sp. R11]
Length = 385
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L + R
Sbjct: 116 GEQVGYETLVRKIVKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAAELKR 175
>gi|395779818|ref|ZP_10460287.1| ribonuclease D [Bartonella washoensis 085-0475]
gi|395420193|gb|EJF86478.1| ribonuclease D [Bartonella washoensis 085-0475]
Length = 384
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G ++K +F++W RPL Q+ YA D L +Y +L Q
Sbjct: 113 GDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQ 169
>gi|423712809|ref|ZP_17687107.1| ribonuclease D [Bartonella washoensis Sb944nv]
gi|395410505|gb|EJF77059.1| ribonuclease D [Bartonella washoensis Sb944nv]
Length = 384
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G ++K +F++W RPL Q+ YA D L +Y +L Q
Sbjct: 113 GDSISYDQIVQRCTGHHIDKSSRFTDWSCRPLSEKQLLYALADVTYLRDIYLLLKKQ 169
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + FG T++K + +W RPL +SYAALD L+ +Y L ++ + G
Sbjct: 123 LNDVVNRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMG 179
>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
Length = 381
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
Q G+ L+TL+ F ++K +NW RPL Q+ YAA D + LL +YQ + +
Sbjct: 122 QHGNSIGLATLLKHYFKLEIDKGISRTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
Length = 383
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S +V +C G L+K +F++W +RPL Q+ YA D L VY L
Sbjct: 112 GDSISYDQIVQRCTGHHLDKSSRFTDWSHRPLSEKQLLYALADVTYLRDVYLSL 165
>gi|346725309|ref|YP_004851978.1| ribonuclease D [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650056|gb|AEO42680.1| ribonuclease D [Xanthomonas axonopodis pv. citrumelo F1]
Length = 363
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQG 172
>gi|255083480|ref|XP_002504726.1| predicted protein [Micromonas sp. RCC299]
gi|226519994|gb|ACO65984.1| predicted protein [Micromonas sp. RCC299]
Length = 1648
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G+ ++K Q S+W RPL +QISYAALDA + + L
Sbjct: 1283 GRAIDKSQQRSDWGARPLTRAQISYAALDALAPAMILRAL 1322
>gi|317508452|ref|ZP_07966122.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
gi|316253299|gb|EFV12699.1| 3'-5' exonuclease [Segniliparus rugosus ATCC BAA-974]
Length = 470
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ LV G L K ++W RPL P ++YAALD LL + + L + A QG
Sbjct: 166 LAALVETLLGVGLAKGHGAADWSQRPLPPEWLNYAALDVELLLPMREALLEALAEQG 222
>gi|386010914|ref|YP_005929191.1| Rnd [Pseudomonas putida BIRD-1]
gi|313497620|gb|ADR58986.1| Rnd [Pseudomonas putida BIRD-1]
Length = 377
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFSVL 168
>gi|378825464|ref|YP_005188196.1| hypothetical protein SFHH103_00872 [Sinorhizobium fredii HH103]
gi|365178516|emb|CCE95371.1| rnd [Sinorhizobium fredii HH103]
Length = 383
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + ++K +F++W RPL Q+ YA D L +Y L + R
Sbjct: 110 GDSVSYDQLVSRIKNEQIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDIYHYLKAELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|411009262|ref|ZP_11385591.1| ribonuclease D [Aeromonas aquariorum AAK1]
Length = 379
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G LV + G TL K ++W RPL P Q+ YAA D F LL +Y
Sbjct: 119 HGVSVGFGALVNEFLGVTLEKDQARTDWLARPLTPRQLEYAAADVFYLLPLY 170
>gi|398863884|ref|ZP_10619426.1| ribonuclease D [Pseudomonas sp. GM78]
gi|398246299|gb|EJN31795.1| ribonuclease D [Pseudomonas sp. GM78]
Length = 377
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV + G L K + S+W RPL +QISYAA DA L +V+ L Q
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVKLRPQ 171
>gi|325928069|ref|ZP_08189282.1| ribonuclease D [Xanthomonas perforans 91-118]
gi|325541567|gb|EGD13096.1| ribonuclease D [Xanthomonas perforans 91-118]
Length = 363
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQG 172
>gi|212556582|gb|ACJ29036.1| Ribonuclease D [Shewanella piezotolerans WP3]
Length = 369
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ LV + TL+K + ++W RPL +Q++YAA D + L ++Y L D+ QG
Sbjct: 120 AKLVEQTLDITLDKGESRTDWLKRPLSEAQLNYAANDVYYLYELYPQLVDKLESQG 175
>gi|389876040|ref|YP_006369605.1| 3'-5' exonuclease [Tistrella mobilis KA081020-065]
gi|388526824|gb|AFK52021.1| 3'-5' exonuclease [Tistrella mobilis KA081020-065]
Length = 203
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L L+ + G ++KQ Q S+W L P Q SYAA D L V +VL + AR+G
Sbjct: 114 HGLRDLLRETIGVEISKQQQSSDWGADQLTPEQQSYAAGDVLHLHAVKRVLDEMLAREG 172
>gi|222085490|ref|YP_002544020.1| ribonuclease D [Agrobacterium radiobacter K84]
gi|221722938|gb|ACM26094.1| ribonuclease D [Agrobacterium radiobacter K84]
Length = 381
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L +Q R
Sbjct: 110 GDSVSYDQLVSRIKNIQIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLSLKEQLER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|46204778|ref|ZP_00049503.2| COG0349: Ribonuclease D [Magnetospirillum magnetotacticum MS-1]
Length = 214
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL + R
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSDAQLAYALSDVTHLVTIYQVLAAELVR 172
Query: 69 QGIELGPLLTEVLSSHAVTTKKSTI 93
+ G L E + AV T TI
Sbjct: 173 T--DRGLWLDEEM---AVLTSPETI 192
>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
Length = 388
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 9 GSPQSL--STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P+ + ++LV G T++K+ ++W RPL +Q YAA D L +Y + +Q
Sbjct: 117 GHPEQVGYASLVSAMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQL 176
Query: 67 ARQG 70
R G
Sbjct: 177 ERLG 180
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
+L+ LV + L+KQ Q ++W RPL + I+YA D LL Y +L +Q +Q
Sbjct: 385 NLAYLVSRFADVILDKQYQLADWRARPLSKAMINYAREDTHYLLYCYDMLREQLLKQ 441
>gi|296171911|ref|ZP_06852975.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295893910|gb|EFG73681.1| ribonuclease D [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 430
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A+QG
Sbjct: 149 NLATMVERLLGSGLAKGHGAADWSKRPLPEEWLNYAALDVELLIELRGAIADVLAQQG 206
>gi|254486025|ref|ZP_05099230.1| ribonuclease D [Roseobacter sp. GAI101]
gi|214042894|gb|EEB83532.1| ribonuclease D [Roseobacter sp. GAI101]
Length = 385
Score = 40.8 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + ++K +F++W RPL +Q YA D L QVY+ L +
Sbjct: 116 GEQVGYETLVRKIAHQAVDKTSRFTDWSRRPLTDAQAKYALADVTHLRQVYEFLARKLEE 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|118387584|ref|XP_001026896.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89308663|gb|EAS06651.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 567
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 30 DQFSNWENRPLRPSQISYAALDAFCLLQVY 59
+Q SNW RPLR +QI Y ALDA+ + +Y
Sbjct: 519 EQTSNWSQRPLREAQIHYGALDAYISIALY 548
>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|418406679|ref|ZP_12979998.1| ribonuclease D [Agrobacterium tumefaciens 5A]
gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|358007172|gb|EHJ99495.1| ribonuclease D [Agrobacterium tumefaciens 5A]
Length = 386
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSISYDQLVQRIKNVQIDKSSRFTDWSRRPLTEKQLDYALADVTHLRDVYLALKAQLER 169
Query: 69 QGIEL 73
+G L
Sbjct: 170 EGRSL 174
>gi|86138715|ref|ZP_01057288.1| ribonuclease D [Roseobacter sp. MED193]
gi|85824775|gb|EAQ44977.1| ribonuclease D [Roseobacter sp. MED193]
Length = 385
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + ++K +F++W RPL +Q +YA D L +VY+ L R
Sbjct: 116 GDQVGYETLVRKIVKEGVDKSSRFTDWSRRPLSEAQQAYALADVTHLRRVYEYLAADLER 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|298245785|ref|ZP_06969591.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
gi|297553266|gb|EFH87131.1| 3'-5' exonuclease [Ktedonobacter racemifer DSM 44963]
Length = 402
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ ++ + F L+K Q ++W RPL P+ ++YAA DA L +Y L
Sbjct: 157 SLAAMLWRAFHMRLDKSLQRTDWTRRPLPPAMVAYAARDAEATLALYSWL 206
>gi|126735792|ref|ZP_01751537.1| ribonuclease D [Roseobacter sp. CCS2]
gi|126714979|gb|EBA11845.1| ribonuclease D [Roseobacter sp. CCS2]
Length = 385
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K L+K +F++W RPL +Q YA D L +Y+ L + A+
Sbjct: 116 GEQVGYETLVRKITKSDLDKSSRFTDWSRRPLTDAQAKYALADVTHLRDIYEHLSARLAK 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|386834151|ref|YP_006239466.1| ribonuclease D [Pasteurella multocida subsp. multocida str. 3480]
gi|385200852|gb|AFI45707.1| ribonuclease D [Pasteurella multocida subsp. multocida str. 3480]
Length = 383
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + ++
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEEL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|395778089|ref|ZP_10458602.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|423715652|ref|ZP_17689876.1| ribonuclease D [Bartonella elizabethae F9251]
gi|395418398|gb|EJF84725.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|395429779|gb|EJF95840.1| ribonuclease D [Bartonella elizabethae F9251]
Length = 384
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L
Sbjct: 113 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYAVADVTHLRDVYLLL 166
>gi|332307210|ref|YP_004435061.1| ribonuclease D [Glaciecola sp. 4H-3-7+YE-5]
gi|410645786|ref|ZP_11356244.1| ribonuclease D [Glaciecola agarilytica NO2]
gi|332174539|gb|AEE23793.1| ribonuclease D [Glaciecola sp. 4H-3-7+YE-5]
gi|410134672|dbj|GAC04643.1| ribonuclease D [Glaciecola agarilytica NO2]
Length = 391
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
++K + ++W RPL P Q YAA D L Q+Y L D+ QG
Sbjct: 130 VDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQG 174
>gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas putida KT2440]
gi|24986330|gb|AAN70164.1|AE016655_9 ribonuclease D [Pseudomonas putida KT2440]
Length = 377
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVL 168
>gi|313145540|ref|ZP_07807733.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|423279805|ref|ZP_17258718.1| hypothetical protein HMPREF1203_02935 [Bacteroides fragilis HMW
610]
gi|424662129|ref|ZP_18099166.1| hypothetical protein HMPREF1205_02515 [Bacteroides fragilis HMW
616]
gi|313134307|gb|EFR51667.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577918|gb|EKA82654.1| hypothetical protein HMPREF1205_02515 [Bacteroides fragilis HMW
616]
gi|404584793|gb|EKA89437.1| hypothetical protein HMPREF1203_02935 [Bacteroides fragilis HMW
610]
Length = 215
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L +Q YAA DA+ L +Y +L D
Sbjct: 138 KSLQKIYGILFREKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYHLLQDLKRTGNY 197
Query: 72 ELGP 75
EL P
Sbjct: 198 ELAP 201
>gi|103487237|ref|YP_616798.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
gi|98977314|gb|ABF53465.1| ribonuclease D [Sphingopyxis alaskensis RB2256]
Length = 395
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
Q S LV G L+K +F++W RPL QI YA D L +++ ++ D+
Sbjct: 115 QAEQVGYSNLVEAWLGLQLDKGARFTDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLI 174
Query: 68 RQG 70
R G
Sbjct: 175 RTG 177
>gi|51473650|ref|YP_067407.1| ribonuclease D [Rickettsia typhi str. Wilmington]
gi|383752428|ref|YP_005427528.1| ribonuclease D [Rickettsia typhi str. TH1527]
gi|383843265|ref|YP_005423768.1| ribonuclease D [Rickettsia typhi str. B9991CWPP]
gi|51459962|gb|AAU03925.1| ribonuclease D [Rickettsia typhi str. Wilmington]
gi|380759071|gb|AFE54306.1| ribonuclease D [Rickettsia typhi str. TH1527]
gi|380759912|gb|AFE55146.1| ribonuclease D [Rickettsia typhi str. B9991CWPP]
Length = 281
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++
Sbjct: 111 GQQLSYDNLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAILDVEYLYKIYKELNN 166
>gi|330466515|ref|YP_004404258.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
gi|328809486|gb|AEB43658.1| 3'-5' exonuclease [Verrucosispora maris AB-18-032]
Length = 438
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G +L K ++W +RPL S ++YAALD L + L + RQG
Sbjct: 166 LAALTEQLLGYSLEKHHSAADWSSRPLPESWLTYAALDVELLTDLRDALDAELTRQG 222
>gi|330808098|ref|YP_004352560.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|423695883|ref|ZP_17670373.1| ribonuclease D [Pseudomonas fluorescens Q8r1-96]
gi|327376206|gb|AEA67556.1| ribonuclease D [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|388009164|gb|EIK70415.1| ribonuclease D [Pseudomonas fluorescens Q8r1-96]
Length = 377
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +QISYAA DA L +V+ +L
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVLL 168
>gi|319786955|ref|YP_004146430.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
gi|317465467|gb|ADV27199.1| ribonuclease D [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
LV + G TL K + S+W RPL P+Q+ YAA D L VYQ
Sbjct: 120 LVAQVTGTTLAKGETRSDWMRRPLSPAQLEYAADDVRHLDAVYQ 163
>gi|222148187|ref|YP_002549144.1| ribonuclease D [Agrobacterium vitis S4]
gi|221735175|gb|ACM36138.1| ribonuclease D [Agrobacterium vitis S4]
Length = 384
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K ++K +F++W RPL Q+ YA D L VY L+ + R
Sbjct: 110 GDSVSYDQLVQKIKNIHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLNAELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|452960708|gb|EME66023.1| ribonuclease D [Rhodococcus ruber BKS 20-38]
Length = 412
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G L K ++W RPL + ++YAALD L+++ + D+ RQG
Sbjct: 138 LAAIVERTLGFELRKGHGAADWSTRPLPDAWLNYAALDVEILVELRDAMADELERQG 194
>gi|407768139|ref|ZP_11115518.1| 3'-5' exonuclease [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288852|gb|EKF14329.1| 3'-5' exonuclease [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 203
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG- 70
L LV + G L+KQ Q S+W + L QI+YAA D L + + L + AR+G
Sbjct: 114 HGLKDLVRELVGINLDKQQQSSDWGSSDLSDEQIAYAASDVLYLHKAKEELDRRLAREGR 173
Query: 71 IELGPLLTEVLSSHA 85
EL E L + A
Sbjct: 174 TELAQACFEFLPTRA 188
>gi|407275534|ref|ZP_11104004.1| ribonuclease D [Rhodococcus sp. P14]
Length = 412
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G L K ++W RPL + ++YAALD L+++ + D+ RQG
Sbjct: 138 LAAIVERTLGFELRKGHGAADWSTRPLPDAWLNYAALDVEILVELRDAMADELERQG 194
>gi|395447806|ref|YP_006388059.1| ribonuclease D [Pseudomonas putida ND6]
gi|397695883|ref|YP_006533766.1| ribonuclease D [Pseudomonas putida DOT-T1E]
gi|388561803|gb|AFK70944.1| ribonuclease D [Pseudomonas putida ND6]
gi|397332613|gb|AFO48972.1| ribonuclease D [Pseudomonas putida DOT-T1E]
Length = 377
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVL 168
>gi|378949376|ref|YP_005206864.1| ribonuclease D [Pseudomonas fluorescens F113]
gi|359759390|gb|AEV61469.1| Ribonuclease D [Pseudomonas fluorescens F113]
Length = 377
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +QISYAA DA L +V+ +L
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVFVLL 168
>gi|296446899|ref|ZP_06888835.1| ribonuclease D [Methylosinus trichosporium OB3b]
gi|296255574|gb|EFH02665.1| ribonuclease D [Methylosinus trichosporium OB3b]
Length = 388
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV ++L+K +F++W RPL +QI YA D L Q+Y L + R
Sbjct: 112 GDQASYVELVKAIAKESLDKSSRFTDWSKRPLSVAQIDYAIADVTHLRQIYTHLRQRLER 171
>gi|399156026|ref|ZP_10756093.1| 3'-5' exonuclease [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 218
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L L L+ G LNK+ Q +NW L Q+ YAA D L+Q+Y L
Sbjct: 116 HGLKDLCLELLGHELNKEQQQTNWSQNDLTQKQLEYAAKDVLDLIQIYHKL 166
>gi|148546540|ref|YP_001266642.1| ribonuclease D [Pseudomonas putida F1]
gi|421524076|ref|ZP_15970703.1| ribonuclease D [Pseudomonas putida LS46]
gi|148510598|gb|ABQ77458.1| ribonuclease D [Pseudomonas putida F1]
gi|402752321|gb|EJX12828.1| ribonuclease D [Pseudomonas putida LS46]
Length = 377
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVL 168
>gi|410640439|ref|ZP_11350971.1| ribonuclease D [Glaciecola chathamensis S18K6]
gi|410139972|dbj|GAC09158.1| ribonuclease D [Glaciecola chathamensis S18K6]
Length = 391
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
++K + ++W RPL P Q YAA D L Q+Y L D+ QG
Sbjct: 130 VDKGESRTDWLARPLSPEQCRYAAYDVLYLYQLYPTLRDKARAQG 174
>gi|410626348|ref|ZP_11337111.1| ribonuclease D [Glaciecola mesophila KMM 241]
gi|410154168|dbj|GAC23880.1| ribonuclease D [Glaciecola mesophila KMM 241]
Length = 390
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
++K + ++W RPL P Q YAA D L Q+Y L D+ QG
Sbjct: 130 VDKGESRTDWLARPLSPEQCQYAAYDVLYLFQLYPTLRDKTLAQG 174
>gi|392532926|ref|ZP_10280063.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
arctica A 37-1-2]
Length = 376
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G+ + +V + G ++K + +NW RPL Q+ YAA D F LL ++++ D+
Sbjct: 112 EGNCMGFALMVKELQGIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRIN 171
Query: 68 RQG 70
G
Sbjct: 172 AAG 174
>gi|359441689|ref|ZP_09231579.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
gi|358036517|dbj|GAA67828.1| ribonuclease D [Pseudoalteromonas sp. BSi20429]
Length = 376
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G+ + +V + G ++K + +NW RPL Q+ YAA D F LL ++++ D+
Sbjct: 112 EGNCMGFALMVKELQGIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIDRIN 171
Query: 68 RQG 70
G
Sbjct: 172 AAG 174
>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
Length = 379
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV +C L+K ++W RPL P QI YAA D L ++Y L +
Sbjct: 113 GDQIGYGNLVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVD 172
Query: 69 QG 70
G
Sbjct: 173 TG 174
>gi|359406866|ref|ZP_09199511.1| 3'-5' exonuclease [Prevotella stercorea DSM 18206]
gi|357554666|gb|EHJ36378.1| 3'-5' exonuclease [Prevotella stercorea DSM 18206]
Length = 206
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL L FG+ ++K+ + +NWE L Q YAA+DA+ +++Y + A
Sbjct: 139 KSLQKLYANLFGEKISKRQRLTNWEADVLTDKQKEYAAIDAWACIKLYNEIMQLMATHDY 198
Query: 72 EL 73
EL
Sbjct: 199 EL 200
>gi|409080167|gb|EKM80528.1| hypothetical protein AGABI1DRAFT_91692 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 920
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 13 SLSTLVLKCFGKTLNKQ--DQFSN-WENRPLRPSQISYAALDAFCLLQVYQVLH 63
SLS + G+ LNK ++ SN WEN L P Q++YAA D + L +Y+ L+
Sbjct: 642 SLSDICASVLGRRLNKNVSERLSNQWENDNLTPQQLNYAAQDVYAALCIYKSLY 695
>gi|348171326|ref|ZP_08878220.1| ribonuclease D [Saccharopolyspora spinosa NRRL 18395]
Length = 415
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SL LV + G L K ++W RPL + YAALD L + + D+ RQG
Sbjct: 140 SLGALVERMLGYRLEKGHSAADWSRRPLPQDWLVYAALDVELLTALRDAMRDELERQG 197
>gi|339503781|ref|YP_004691201.1| ribonuclease D [Roseobacter litoralis Och 149]
gi|338757774|gb|AEI94238.1| putative ribonuclease D [Roseobacter litoralis Och 149]
Length = 387
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q+ YA D L VY+ L ++
Sbjct: 116 GEQVGYETLVRRIAKQPLDKTSRFTDWSRRPLTDAQMKYALADVTHLRDVYEFLAEKLEE 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|89054329|ref|YP_509780.1| ribonuclease D [Jannaschia sp. CCS1]
gi|122498832|sp|Q28RA7.1|RND_JANSC RecName: Full=Ribonuclease D; Short=RNase D
gi|88863878|gb|ABD54755.1| ribonuclease D [Jannaschia sp. CCS1]
Length = 386
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + L+K +F++W RPL +Q YA D L ++Y+ L + AR
Sbjct: 117 GDQVGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELAR 176
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
LS ++ FG +LNK+ Q +W RPL P Q+ YA LD L+ + +L
Sbjct: 118 LSKILETHFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHML 166
>gi|150007050|ref|YP_001301793.1| hypothetical protein BDI_0393 [Parabacteroides distasonis ATCC
8503]
gi|256840209|ref|ZP_05545717.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262381047|ref|ZP_06074185.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298377471|ref|ZP_06987423.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
gi|301311285|ref|ZP_07217213.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
gi|423331015|ref|ZP_17308799.1| hypothetical protein HMPREF1075_00812 [Parabacteroides distasonis
CL03T12C09]
gi|423338251|ref|ZP_17315994.1| hypothetical protein HMPREF1059_01919 [Parabacteroides distasonis
CL09T03C24]
gi|149935474|gb|ABR42171.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737481|gb|EEU50807.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|262296224|gb|EEY84154.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298265490|gb|EFI07151.1| 3'-5' exonuclease domain protein [Bacteroides sp. 3_1_19]
gi|300830859|gb|EFK61501.1| 3'-5' exonuclease domain protein [Bacteroides sp. 20_3]
gi|409231323|gb|EKN24177.1| hypothetical protein HMPREF1075_00812 [Parabacteroides distasonis
CL03T12C09]
gi|409234995|gb|EKN27818.1| hypothetical protein HMPREF1059_01919 [Parabacteroides distasonis
CL09T03C24]
Length = 193
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + +NWE L SQ YAALDA+ L++Y +L+
Sbjct: 141 SLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLN 191
>gi|392537406|ref|ZP_10284543.1| putative RNase D, processing tRNA precursors [Pseudoalteromonas
marina mano4]
Length = 376
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+G+ + +V G ++K + +NW RPL Q+ YAA D F LL ++++ D+
Sbjct: 112 EGNCMGFALMVKTLLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFELIIDR 169
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ + K FG LNK+ Q ++W RP I YA +D L+++Y L ++ +G
Sbjct: 134 LAAALKKRFGVELNKKYQKADWSKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAKG 190
>gi|255015322|ref|ZP_05287448.1| hypothetical protein B2_15541 [Bacteroides sp. 2_1_7]
gi|410104298|ref|ZP_11299211.1| hypothetical protein HMPREF0999_02983 [Parabacteroides sp. D25]
gi|409234107|gb|EKN26937.1| hypothetical protein HMPREF0999_02983 [Parabacteroides sp. D25]
Length = 193
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + +NWE L SQ YAALDA+ L++Y +L+
Sbjct: 141 SLQKIYAILFQKKISKGQRLTNWEADVLTDSQKKYAALDAWACLRIYNLLN 191
>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
Length = 384
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L
Sbjct: 113 GDSISYDQIVQRCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLL 166
>gi|114775667|ref|ZP_01451235.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
gi|114553778|gb|EAU56159.1| ribonuclease D [Mariprofundus ferrooxydans PV-1]
Length = 398
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G LV + K L K + F++W+ RPL Q++YAA D L+ V+Q L ++
Sbjct: 116 GQQVGFGNLVQRITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKER 172
>gi|395784188|ref|ZP_10464027.1| ribonuclease D [Bartonella melophagi K-2C]
gi|395423943|gb|EJF90131.1| ribonuclease D [Bartonella melophagi K-2C]
Length = 383
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S +V +C G L+K +F++W +RPL Q+ YA D L VY
Sbjct: 112 GDSISYDQIVKRCTGHHLDKSSRFTDWSHRPLSEKQLLYALADVTYLRDVY 162
>gi|359450878|ref|ZP_09240297.1| ribonuclease D [Pseudoalteromonas sp. BSi20480]
gi|358043252|dbj|GAA76546.1| ribonuclease D [Pseudoalteromonas sp. BSi20480]
Length = 376
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+G+ + +V G ++K + +NW RPL Q+ YAA D F LL ++++ D+
Sbjct: 112 EGNCMGFALMVKTLLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFELIIDR 169
>gi|15604326|ref|NP_220842.1| ribonuclease D (RND) [Rickettsia prowazekii str. Madrid E]
gi|383487295|ref|YP_005404975.1| ribonuclease D [Rickettsia prowazekii str. GvV257]
gi|383487873|ref|YP_005405552.1| ribonuclease D [Rickettsia prowazekii str. Chernikova]
gi|383488720|ref|YP_005406398.1| ribonuclease D [Rickettsia prowazekii str. Katsinyian]
gi|383489559|ref|YP_005407236.1| ribonuclease D [Rickettsia prowazekii str. Dachau]
gi|383499699|ref|YP_005413060.1| ribonuclease D [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500535|ref|YP_005413895.1| ribonuclease D [Rickettsia prowazekii str. RpGvF24]
gi|386082314|ref|YP_005998891.1| Ribonuclease D [Rickettsia prowazekii str. Rp22]
gi|3861018|emb|CAA14918.1| RIBONUCLEASE D (rnd) [Rickettsia prowazekii str. Madrid E]
gi|292572078|gb|ADE29993.1| Ribonuclease D [Rickettsia prowazekii str. Rp22]
gi|380757660|gb|AFE52897.1| ribonuclease D [Rickettsia prowazekii str. GvV257]
gi|380758232|gb|AFE53468.1| ribonuclease D [Rickettsia prowazekii str. RpGvF24]
gi|380760752|gb|AFE49274.1| ribonuclease D [Rickettsia prowazekii str. Chernikova]
gi|380761599|gb|AFE50120.1| ribonuclease D [Rickettsia prowazekii str. Katsinyian]
gi|380762445|gb|AFE50965.1| ribonuclease D [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763282|gb|AFE51801.1| ribonuclease D [Rickettsia prowazekii str. Dachau]
Length = 281
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L++
Sbjct: 111 GQQLSYDNLCYKLIGITIDKTHQKSNWLKRPITNDMLNYAILDVEYLYKIYKELNN 166
>gi|326332250|ref|ZP_08198530.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
gi|325949956|gb|EGD42016.1| putative ribonuclease D [Nocardioidaceae bacterium Broad-1]
Length = 422
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L TLV G T+ K+ ++W RPL + + YAALD L+++ + L +
Sbjct: 138 GYPRVGLGTLVETVLGFTMLKEHSAADWSTRPLPDAWLEYAALDVEVLVELREALAAELV 197
Query: 68 RQG 70
QG
Sbjct: 198 AQG 200
>gi|119470938|ref|ZP_01613522.1| putative RNase D, processing tRNA precursors [Alteromonadales
bacterium TW-7]
gi|119445960|gb|EAW27240.1| putative RNase D, processing tRNA precursors [Alteromonadales
bacterium TW-7]
Length = 376
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+G+ + +V G ++K + +NW RPL Q+ YAA D F LL ++++ D+
Sbjct: 112 EGNCMGFALMVKTLLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFELIIDR 169
>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
Length = 382
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L+K +F++W RPL +QI YA D L +Y
Sbjct: 112 GDSISYDQLVQRVTGHALDKSSRFTDWSRRPLSQAQIVYAVADVTHLRDIY 162
>gi|440226136|ref|YP_007333227.1| ribonuclease D [Rhizobium tropici CIAT 899]
gi|440037647|gb|AGB70681.1| ribonuclease D [Rhizobium tropici CIAT 899]
Length = 381
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L +Q R
Sbjct: 110 GDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLSLKEQLQR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|70728873|ref|YP_258622.1| ribonuclease D [Pseudomonas protegens Pf-5]
gi|68343172|gb|AAY90778.1| ribonuclease D [Pseudomonas protegens Pf-5]
Length = 377
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L QV+ L
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAQVFTEL 168
>gi|388543349|ref|ZP_10146640.1| ribonuclease D [Pseudomonas sp. M47T1]
gi|388278661|gb|EIK98232.1| ribonuclease D [Pseudomonas sp. M47T1]
Length = 377
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV L K + S+W RPL +QISYAA DA L +VY+ L Q +
Sbjct: 115 GFSMGYSRLVQAVLDIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVYEKLRPQLSD 174
Query: 69 Q 69
+
Sbjct: 175 E 175
>gi|393777200|ref|ZP_10365493.1| 3'-5' exonuclease [Ralstonia sp. PBA]
gi|392715901|gb|EIZ03482.1| 3'-5' exonuclease [Ralstonia sp. PBA]
Length = 197
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
+++ ++ + F K+ K+ SNW LRP+Q+ YAA DA+ L VY+ LH
Sbjct: 148 AVAMVLQQAFQKS--KRISTSNWAAERLRPNQLLYAANDAYAALMVYRALH 196
>gi|240139668|ref|YP_002964145.1| ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
gi|418059465|ref|ZP_12697413.1| ribonuclease D [Methylobacterium extorquens DSM 13060]
gi|240009642|gb|ACS40868.1| Ribonuclease D (RNase D) [Methylobacterium extorquens AM1]
gi|373567006|gb|EHP92987.1| ribonuclease D [Methylobacterium extorquens DSM 13060]
Length = 384
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVL 166
>gi|188582284|ref|YP_001925729.1| ribonuclease D [Methylobacterium populi BJ001]
gi|179345782|gb|ACB81194.1| ribonuclease D [Methylobacterium populi BJ001]
Length = 384
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVL 166
>gi|126731278|ref|ZP_01747085.1| ribonuclease D [Sagittula stellata E-37]
gi|126708189|gb|EBA07248.1| ribonuclease D [Sagittula stellata E-37]
Length = 385
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q SYA D L ++Y+ L +
Sbjct: 116 GEQVGYETLVKRIAKQQLDKSSRFTDWSRRPLTDAQKSYALADVTHLREIYEFLAAKLEE 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|383782002|ref|YP_005466569.1| putative ribonuclease D [Actinoplanes missouriensis 431]
gi|381375235|dbj|BAL92053.1| putative ribonuclease D [Actinoplanes missouriensis 431]
Length = 387
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G +L K ++W RPL S ++YAALD L + +L + RQG
Sbjct: 111 LAALTEQLLGYSLEKHHSAADWSTRPLPDSWLTYAALDVELLTDLRDLLAAELERQG 167
>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
Length = 406
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +LV G ++K +F++W RPL P+Q++YAA D L VY+ L
Sbjct: 127 GDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERL 180
>gi|218531091|ref|YP_002421907.1| ribonuclease D [Methylobacterium extorquens CM4]
gi|218523394|gb|ACK83979.1| ribonuclease D [Methylobacterium extorquens CM4]
Length = 384
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVL 166
>gi|282860304|ref|ZP_06269373.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
gi|424899382|ref|ZP_18322924.1| ribonuclease D [Prevotella bivia DSM 20514]
gi|282586901|gb|EFB92137.1| 3'-5' exonuclease [Prevotella bivia JCVIHMP010]
gi|388591582|gb|EIM31821.1| ribonuclease D [Prevotella bivia DSM 20514]
Length = 225
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
SL L FG+ + K++Q +NWEN L Q YA+ DA+ + +Y
Sbjct: 141 SLQKLYANVFGEKIVKREQLTNWENTELTDKQKRYASTDAWTCINLY 187
>gi|304391965|ref|ZP_07373907.1| ribonuclease D [Ahrensia sp. R2A130]
gi|303296194|gb|EFL90552.1| ribonuclease D [Ahrensia sp. R2A130]
Length = 383
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G + + LV + G ++K +F++W RPL Q+ YA D L VYQ L
Sbjct: 112 GDSVAYNALVSRITGGVIDKSSRFTDWARRPLTTKQLDYALADVTHLRDVYQSL 165
>gi|432099984|gb|ELK28878.1| Werner syndrome ATP-dependent helicase [Myotis davidii]
Length = 1398
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL+ LV FGK L +K + SNW+N PL Q YAA DA+ +YQ L
Sbjct: 187 SLNGLVKHLFGKQLLKDKSIRCSNWKNYPLTEVQKLYAATDAYAGFIIYQKLQ 239
>gi|393718410|ref|ZP_10338337.1| ribonuclease D [Sphingomonas echinoides ATCC 14820]
Length = 395
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
QG S LV G T++K +F++W RPL QI YA D L +++ + ++
Sbjct: 115 QGEQVGYSNLVDAYLGITVDKGARFTDWSRRPLDARQIEYAIGDVTHLAKIFPKMLERLR 174
Query: 68 RQG 70
R G
Sbjct: 175 RTG 177
>gi|421853080|ref|ZP_16285760.1| ribonuclease D [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478657|dbj|GAB30963.1| ribonuclease D [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 402
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +LV G ++K +F++W RPL P+Q++YAA D L VY+ L
Sbjct: 123 GDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERL 176
>gi|163852332|ref|YP_001640375.1| ribonuclease D [Methylobacterium extorquens PA1]
gi|163663937|gb|ABY31304.1| ribonuclease D [Methylobacterium extorquens PA1]
Length = 384
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVL 166
>gi|424513358|emb|CCO65980.1| predicted protein [Bathycoccus prasinos]
Length = 568
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ +LKC L+K+ Q S+W RPL Q YAA DA+ L+ + V+
Sbjct: 274 ALTRDILKC---NLDKKCQVSDWSQRPLSDPQQRYAATDAYSLISILDVV 320
>gi|254562078|ref|YP_003069173.1| ribonuclease D [Methylobacterium extorquens DM4]
gi|254269356|emb|CAX25322.1| Ribonuclease D (RNase D) [Methylobacterium extorquens DM4]
Length = 384
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+ +YQVL
Sbjct: 113 GDSVSYEQLVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVL 166
>gi|150396023|ref|YP_001326490.1| ribonuclease D [Sinorhizobium medicae WSM419]
gi|150027538|gb|ABR59655.1| ribonuclease D [Sinorhizobium medicae WSM419]
Length = 383
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + + ++K +F++W RPL Q+ YA D L +Y L + R
Sbjct: 110 GDSVSYDQLVSRIKNEQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDIYHYLVQELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|340345979|ref|ZP_08669109.1| 3'-5' exonuclease domain protein [Prevotella dentalis DSM 3688]
gi|433651659|ref|YP_007278038.1| ribonuclease D [Prevotella dentalis DSM 3688]
gi|339612966|gb|EGQ17762.1| 3'-5' exonuclease domain protein [Prevotella dentalis DSM 3688]
gi|433302192|gb|AGB28008.1| ribonuclease D [Prevotella dentalis DSM 3688]
Length = 271
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL L FG+ ++K+ + SNWE L Q YAA+DA+ + +Y+
Sbjct: 141 SLQKLYANFFGRKISKRQRLSNWEAPILDERQKQYAAIDAWACIHLYE 188
>gi|77462516|ref|YP_352020.1| ribonuclease D [Rhodobacter sphaeroides 2.4.1]
gi|126461450|ref|YP_001042564.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
gi|77386934|gb|ABA78119.1| Ribonuclease D [Rhodobacter sphaeroides 2.4.1]
gi|126103114|gb|ABN75792.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17029]
Length = 385
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L Q +
Sbjct: 116 GEQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|393724858|ref|ZP_10344785.1| ribonuclease D [Sphingomonas sp. PAMC 26605]
Length = 392
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
QG S LV G T++K +F++W RPL QI YA D L +++ + ++
Sbjct: 115 QGEQVGYSNLVDAWLGITVDKGARFTDWSRRPLDARQIEYAIGDVTHLARIFPKMLERLR 174
Query: 68 RQG 70
R G
Sbjct: 175 RTG 177
>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|384041146|ref|YP_005479890.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
gi|384049661|ref|YP_005476724.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|384052771|ref|YP_005485865.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|384056003|ref|YP_005488670.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|384058644|ref|YP_005497772.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|384061938|ref|YP_005482580.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|384118014|ref|YP_005500638.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
Length = 402
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +LV G ++K +F++W RPL P+Q++YAA D L VY+ L
Sbjct: 123 GDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERL 176
>gi|421849279|ref|ZP_16282261.1| ribonuclease D [Acetobacter pasteurianus NBRC 101655]
gi|371459917|dbj|GAB27464.1| ribonuclease D [Acetobacter pasteurianus NBRC 101655]
Length = 402
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +LV G ++K +F++W RPL P+Q++YAA D L VY+ L
Sbjct: 123 GDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERL 176
>gi|146279098|ref|YP_001169257.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
gi|145557339|gb|ABP71952.1| ribonuclease D [Rhodobacter sphaeroides ATCC 17025]
Length = 385
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L Q +
Sbjct: 116 GEQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|397641401|gb|EJK74630.1| hypothetical protein THAOC_03681 [Thalassiosira oceanica]
Length = 819
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 69
GK L+K +Q S+W RPL Q YAALDA+ +Y + + A +
Sbjct: 772 LGKKLDKNEQCSDWLARPLTIEQREYAALDAWACASIYHEMRQRKATK 819
>gi|332557401|ref|ZP_08411723.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
gi|332275113|gb|EGJ20428.1| ribonuclease D [Rhodobacter sphaeroides WS8N]
Length = 385
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L Q +
Sbjct: 116 GEQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|325277926|ref|ZP_08143467.1| ribonuclease D [Pseudomonas sp. TJI-51]
gi|324096941|gb|EGB95246.1| ribonuclease D [Pseudomonas sp. TJI-51]
Length = 377
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFTVL 168
>gi|387131822|ref|YP_006297795.1| 3'-5' exonuclease [Prevotella intermedia 17]
gi|386374670|gb|AFJ07519.1| 3'-5' exonuclease [Prevotella intermedia 17]
Length = 227
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L F + + K+ Q SNWE L Q +YAA DA+ +Q+Y+ L + Q E
Sbjct: 141 SLQKLYANLFHERITKRQQLSNWEAPVLTEQQKTYAATDAWTCIQIYERLQELHNTQNYE 200
>gi|379712518|ref|YP_005300857.1| ribonuclease D [Rickettsia philipii str. 364D]
gi|376329163|gb|AFB26400.1| ribonuclease D [Rickettsia philipii str. 364D]
Length = 281
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q S+W RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSHWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
Length = 348
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+K + ++W RPL Q+ YAA D F LL +Y+ L +Q + G
Sbjct: 105 LDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAG 149
>gi|221638369|ref|YP_002524631.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
gi|221159150|gb|ACM00130.1| Ribonuclease D [Rhodobacter sphaeroides KD131]
Length = 385
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L Q +
Sbjct: 116 GEQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|407983300|ref|ZP_11163957.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
gi|407375193|gb|EKF24152.1| 3'-5' exonuclease family protein [Mycobacterium hassiacum DSM
44199]
Length = 426
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+ V + G L K ++W RPL P ++YAALD LL++ + + A QG
Sbjct: 143 NLAAEVQRLLGLQLTKGHGAADWSKRPLPPEWLNYAALDVEVLLELREAIAKVLAEQG 200
>gi|157828635|ref|YP_001494877.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933351|ref|YP_001650140.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
gi|378721451|ref|YP_005286338.1| ribonuclease D [Rickettsia rickettsii str. Colombia]
gi|378722801|ref|YP_005287687.1| ribonuclease D [Rickettsia rickettsii str. Arizona]
gi|378724155|ref|YP_005289039.1| ribonuclease D [Rickettsia rickettsii str. Hauke]
gi|379016292|ref|YP_005292527.1| ribonuclease D [Rickettsia rickettsii str. Brazil]
gi|379017942|ref|YP_005294177.1| ribonuclease D [Rickettsia rickettsii str. Hino]
gi|379018905|ref|YP_005295139.1| ribonuclease D [Rickettsia rickettsii str. Hlp#2]
gi|157801116|gb|ABV76369.1| ribonuclease D [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908438|gb|ABY72734.1| ribonuclease D [Rickettsia rickettsii str. Iowa]
gi|376324816|gb|AFB22056.1| ribonuclease D [Rickettsia rickettsii str. Brazil]
gi|376326475|gb|AFB23714.1| ribonuclease D [Rickettsia rickettsii str. Colombia]
gi|376327825|gb|AFB25063.1| ribonuclease D [Rickettsia rickettsii str. Arizona]
gi|376330508|gb|AFB27744.1| ribonuclease D [Rickettsia rickettsii str. Hino]
gi|376331485|gb|AFB28719.1| ribonuclease D [Rickettsia rickettsii str. Hlp#2]
gi|376333170|gb|AFB30403.1| ribonuclease D [Rickettsia rickettsii str. Hauke]
Length = 281
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L K G T++K Q S+W RP+ ++YA LD L ++Y+ L++ R
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSHWLKRPITSDMLNYAMLDVEYLYKIYKELNNIIVR 170
Query: 69 QGI 71
+
Sbjct: 171 NNL 173
>gi|224538568|ref|ZP_03679107.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
DSM 14838]
gi|423221874|ref|ZP_17208344.1| hypothetical protein HMPREF1062_00530 [Bacteroides cellulosilyticus
CL02T12C19]
gi|224519812|gb|EEF88917.1| hypothetical protein BACCELL_03462 [Bacteroides cellulosilyticus
DSM 14838]
gi|392645292|gb|EIY39021.1| hypothetical protein HMPREF1062_00530 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 215
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYGILFGEKISKSQRLSNWEAEHLTEPQKQYAATDAWACLNIYNRLQELKVTGDY 197
Query: 72 ELGP 75
EL P
Sbjct: 198 ELEP 201
>gi|429209846|ref|ZP_19201071.1| Ribonuclease D [Rhodobacter sp. AKP1]
gi|428187218|gb|EKX55805.1| Ribonuclease D [Rhodobacter sp. AKP1]
Length = 385
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q +YA D L +Y+ L Q +
Sbjct: 116 GEQVGYETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|395541837|ref|XP_003772843.1| PREDICTED: Werner syndrome ATP-dependent helicase [Sarcophilus
harrisii]
Length = 1448
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQF--SNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL +LV F K L K+ S WE+ PL Q YAA+DA+ L VYQ L
Sbjct: 171 SLDSLVKHLFSKRLLKEQSLRCSRWEDFPLTEDQKQYAAIDAYASLIVYQKLE 223
>gi|99081315|ref|YP_613469.1| ribonuclease D [Ruegeria sp. TM1040]
gi|99037595|gb|ABF64207.1| ribonuclease D [Ruegeria sp. TM1040]
Length = 385
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L +
Sbjct: 116 GEQVGYETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLRKE 172
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
S LV G +L K + ++W RPL P QI YA D L+ Y+V+ +
Sbjct: 114 SYHNLVHSFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESK 166
>gi|170746940|ref|YP_001753200.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
gi|170653462|gb|ACB22517.1| ribonuclease D [Methylobacterium radiotolerans JCM 2831]
Length = 395
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV ++K +F++W RPL +Q++YA D L+++Y+VL
Sbjct: 113 GDSVSYEQLVNDVAKAKIDKSSRFTDWSRRPLSEAQLTYALSDVTHLVKIYEVL 166
>gi|406922510|gb|EKD59979.1| hypothetical protein ACD_54C01017G0002 [uncultured bacterium]
Length = 385
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K + L+K +F++W RPL +Q YA D L +Y+ L Q A+
Sbjct: 116 GEQVGYETLVKKIAKQDLDKTSRFTDWSRRPLSLAQSEYALGDVTHLRVIYEWLAAQLAK 175
Query: 69 QG 70
G
Sbjct: 176 NG 177
>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
gi|360035866|ref|YP_004937629.1| ribonuclease D [Vibrio cholerae O1 str. 2010EL-1786]
gi|417814024|ref|ZP_12460677.1| ribonuclease D [Vibrio cholerae HC-49A2]
gi|417817761|ref|ZP_12464390.1| ribonuclease D [Vibrio cholerae HCUF01]
gi|418335002|ref|ZP_12943915.1| ribonuclease D [Vibrio cholerae HC-06A1]
gi|418338616|ref|ZP_12947510.1| ribonuclease D [Vibrio cholerae HC-23A1]
gi|418346537|ref|ZP_12951297.1| ribonuclease D [Vibrio cholerae HC-28A1]
gi|418355777|ref|ZP_12958496.1| ribonuclease D [Vibrio cholerae HC-61A1]
gi|419826957|ref|ZP_14350456.1| ribonuclease D [Vibrio cholerae CP1033(6)]
gi|421317834|ref|ZP_15768402.1| ribonuclease D [Vibrio cholerae CP1032(5)]
gi|421321751|ref|ZP_15772304.1| ribonuclease D [Vibrio cholerae CP1038(11)]
gi|421329211|ref|ZP_15779721.1| ribonuclease D [Vibrio cholerae CP1042(15)]
gi|421333120|ref|ZP_15783597.1| ribonuclease D [Vibrio cholerae CP1046(19)]
gi|421336709|ref|ZP_15787170.1| ribonuclease D [Vibrio cholerae CP1048(21)]
gi|421348017|ref|ZP_15798394.1| ribonuclease D [Vibrio cholerae HC-46A1]
gi|422903287|ref|ZP_16938263.1| ribonuclease D [Vibrio cholerae HC-48A1]
gi|422907171|ref|ZP_16941975.1| ribonuclease D [Vibrio cholerae HC-70A1]
gi|422914019|ref|ZP_16948525.1| ribonuclease D [Vibrio cholerae HFU-02]
gi|422926225|ref|ZP_16959239.1| ribonuclease D [Vibrio cholerae HC-38A1]
gi|423145545|ref|ZP_17133139.1| ribonuclease D [Vibrio cholerae HC-19A1]
gi|423150221|ref|ZP_17137535.1| ribonuclease D [Vibrio cholerae HC-21A1]
gi|423154039|ref|ZP_17141220.1| ribonuclease D [Vibrio cholerae HC-22A1]
gi|423157124|ref|ZP_17144217.1| ribonuclease D [Vibrio cholerae HC-32A1]
gi|423160694|ref|ZP_17147634.1| ribonuclease D [Vibrio cholerae HC-33A2]
gi|423165516|ref|ZP_17152244.1| ribonuclease D [Vibrio cholerae HC-48B2]
gi|423731532|ref|ZP_17704835.1| ribonuclease D [Vibrio cholerae HC-17A1]
gi|423768813|ref|ZP_17712962.1| ribonuclease D [Vibrio cholerae HC-50A2]
gi|423930859|ref|ZP_17731562.1| ribonuclease D [Vibrio cholerae HC-77A1]
gi|424002974|ref|ZP_17746049.1| ribonuclease D [Vibrio cholerae HC-17A2]
gi|424006763|ref|ZP_17749733.1| ribonuclease D [Vibrio cholerae HC-37A1]
gi|424024745|ref|ZP_17764396.1| ribonuclease D [Vibrio cholerae HC-62B1]
gi|424586905|ref|ZP_18026484.1| ribonuclease D [Vibrio cholerae CP1030(3)]
gi|424591649|ref|ZP_18031075.1| ribonuclease D [Vibrio cholerae CP1037(10)]
gi|424595554|ref|ZP_18034875.1| ribonuclease D [Vibrio cholerae CP1040(13)]
gi|424599472|ref|ZP_18038651.1| ribonuclease D [Vibrio Cholerae CP1044(17)]
gi|424602192|ref|ZP_18041333.1| ribonuclease D [Vibrio cholerae CP1047(20)]
gi|424607162|ref|ZP_18046104.1| ribonuclease D [Vibrio cholerae CP1050(23)]
gi|424610984|ref|ZP_18049823.1| ribonuclease D [Vibrio cholerae HC-39A1]
gi|424613797|ref|ZP_18052585.1| ribonuclease D [Vibrio cholerae HC-41A1]
gi|424617774|ref|ZP_18056446.1| ribonuclease D [Vibrio cholerae HC-42A1]
gi|424622559|ref|ZP_18061064.1| ribonuclease D [Vibrio cholerae HC-47A1]
gi|424645522|ref|ZP_18083258.1| ribonuclease D [Vibrio cholerae HC-56A2]
gi|424653287|ref|ZP_18090667.1| ribonuclease D [Vibrio cholerae HC-57A2]
gi|424657111|ref|ZP_18094396.1| ribonuclease D [Vibrio cholerae HC-81A2]
gi|440710182|ref|ZP_20890833.1| ribonuclease D [Vibrio cholerae 4260B]
gi|443504342|ref|ZP_21071300.1| ribonuclease D [Vibrio cholerae HC-64A1]
gi|443508240|ref|ZP_21075003.1| ribonuclease D [Vibrio cholerae HC-65A1]
gi|443512082|ref|ZP_21078720.1| ribonuclease D [Vibrio cholerae HC-67A1]
gi|443515640|ref|ZP_21082151.1| ribonuclease D [Vibrio cholerae HC-68A1]
gi|443519433|ref|ZP_21085829.1| ribonuclease D [Vibrio cholerae HC-71A1]
gi|443524323|ref|ZP_21090536.1| ribonuclease D [Vibrio cholerae HC-72A2]
gi|443531920|ref|ZP_21097934.1| ribonuclease D [Vibrio cholerae HC-7A1]
gi|443535719|ref|ZP_21101597.1| ribonuclease D [Vibrio cholerae HC-80A1]
gi|443539264|ref|ZP_21105118.1| ribonuclease D [Vibrio cholerae HC-81A1]
gi|449055593|ref|ZP_21734261.1| Ribonuclease D [Vibrio cholerae O1 str. Inaba G4222]
gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
gi|340036510|gb|EGQ97486.1| ribonuclease D [Vibrio cholerae HC-49A2]
gi|340037484|gb|EGQ98459.1| ribonuclease D [Vibrio cholerae HCUF01]
gi|341621378|gb|EGS47124.1| ribonuclease D [Vibrio cholerae HC-70A1]
gi|341621521|gb|EGS47266.1| ribonuclease D [Vibrio cholerae HC-48A1]
gi|341637243|gb|EGS61931.1| ribonuclease D [Vibrio cholerae HFU-02]
gi|341646007|gb|EGS70125.1| ribonuclease D [Vibrio cholerae HC-38A1]
gi|356417026|gb|EHH70645.1| ribonuclease D [Vibrio cholerae HC-06A1]
gi|356418213|gb|EHH71816.1| ribonuclease D [Vibrio cholerae HC-21A1]
gi|356422759|gb|EHH76228.1| ribonuclease D [Vibrio cholerae HC-19A1]
gi|356428599|gb|EHH81825.1| ribonuclease D [Vibrio cholerae HC-22A1]
gi|356430258|gb|EHH83467.1| ribonuclease D [Vibrio cholerae HC-23A1]
gi|356432842|gb|EHH86037.1| ribonuclease D [Vibrio cholerae HC-28A1]
gi|356439398|gb|EHH92367.1| ribonuclease D [Vibrio cholerae HC-32A1]
gi|356445435|gb|EHH98239.1| ribonuclease D [Vibrio cholerae HC-33A2]
gi|356450871|gb|EHI03579.1| ribonuclease D [Vibrio cholerae HC-48B2]
gi|356452275|gb|EHI04954.1| ribonuclease D [Vibrio cholerae HC-61A1]
gi|356647020|gb|AET27075.1| ribonuclease D [Vibrio cholerae O1 str. 2010EL-1786]
gi|395916092|gb|EJH26922.1| ribonuclease D [Vibrio cholerae CP1032(5)]
gi|395918745|gb|EJH29569.1| ribonuclease D [Vibrio cholerae CP1038(11)]
gi|395927745|gb|EJH38508.1| ribonuclease D [Vibrio cholerae CP1042(15)]
gi|395928522|gb|EJH39275.1| ribonuclease D [Vibrio cholerae CP1046(19)]
gi|395931808|gb|EJH42552.1| ribonuclease D [Vibrio cholerae CP1048(21)]
gi|395942596|gb|EJH53272.1| ribonuclease D [Vibrio cholerae HC-46A1]
gi|395958591|gb|EJH69070.1| ribonuclease D [Vibrio cholerae HC-56A2]
gi|395959182|gb|EJH69625.1| ribonuclease D [Vibrio cholerae HC-57A2]
gi|395961885|gb|EJH72194.1| ribonuclease D [Vibrio cholerae HC-42A1]
gi|395970673|gb|EJH80413.1| ribonuclease D [Vibrio cholerae HC-47A1]
gi|395972902|gb|EJH82476.1| ribonuclease D [Vibrio cholerae CP1030(3)]
gi|395975338|gb|EJH84829.1| ribonuclease D [Vibrio cholerae CP1047(20)]
gi|408007093|gb|EKG45200.1| ribonuclease D [Vibrio cholerae HC-39A1]
gi|408012799|gb|EKG50567.1| ribonuclease D [Vibrio cholerae HC-41A1]
gi|408030990|gb|EKG67633.1| ribonuclease D [Vibrio cholerae CP1037(10)]
gi|408031934|gb|EKG68534.1| ribonuclease D [Vibrio cholerae CP1040(13)]
gi|408041489|gb|EKG77595.1| ribonuclease D [Vibrio Cholerae CP1044(17)]
gi|408043025|gb|EKG79051.1| ribonuclease D [Vibrio cholerae CP1050(23)]
gi|408053118|gb|EKG88138.1| ribonuclease D [Vibrio cholerae HC-81A2]
gi|408607747|gb|EKK81150.1| ribonuclease D [Vibrio cholerae CP1033(6)]
gi|408624154|gb|EKK97106.1| ribonuclease D [Vibrio cholerae HC-17A1]
gi|408633686|gb|EKL06000.1| ribonuclease D [Vibrio cholerae HC-50A2]
gi|408654291|gb|EKL25433.1| ribonuclease D [Vibrio cholerae HC-77A1]
gi|408845371|gb|EKL85487.1| ribonuclease D [Vibrio cholerae HC-37A1]
gi|408846144|gb|EKL86256.1| ribonuclease D [Vibrio cholerae HC-17A2]
gi|408870337|gb|EKM09617.1| ribonuclease D [Vibrio cholerae HC-62B1]
gi|439974405|gb|ELP50582.1| ribonuclease D [Vibrio cholerae 4260B]
gi|443431287|gb|ELS73839.1| ribonuclease D [Vibrio cholerae HC-64A1]
gi|443435182|gb|ELS81326.1| ribonuclease D [Vibrio cholerae HC-65A1]
gi|443439065|gb|ELS88780.1| ribonuclease D [Vibrio cholerae HC-67A1]
gi|443443050|gb|ELS96352.1| ribonuclease D [Vibrio cholerae HC-68A1]
gi|443446851|gb|ELT03507.1| ribonuclease D [Vibrio cholerae HC-71A1]
gi|443449657|gb|ELT09948.1| ribonuclease D [Vibrio cholerae HC-72A2]
gi|443457310|gb|ELT24707.1| ribonuclease D [Vibrio cholerae HC-7A1]
gi|443461259|gb|ELT32332.1| ribonuclease D [Vibrio cholerae HC-80A1]
gi|443465364|gb|ELT40024.1| ribonuclease D [Vibrio cholerae HC-81A1]
gi|448264632|gb|EMB01869.1| Ribonuclease D [Vibrio cholerae O1 str. Inaba G4222]
Length = 373
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+K + ++W RPL Q+ YAA D F LL +Y+ L +Q + G
Sbjct: 130 LDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAG 174
>gi|86357133|ref|YP_469025.1| RNase D protein [Rhizobium etli CFN 42]
gi|86281235|gb|ABC90298.1| RNase D protein [Rhizobium etli CFN 42]
Length = 381
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSEKQLEYALADVTHLRDVYLSLSSQLDR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|402703489|ref|ZP_10851468.1| ribonuclease D [Rickettsia helvetica C9P9]
Length = 285
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
G S L K G T++K Q SNW RP+ ++YA LD L ++Y+ L+
Sbjct: 111 GKQLSYDDLCYKLIGITIDKTHQKSNWLKRPITSDMLNYAMLDVEYLYKIYKELN 165
>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
gi|227118431|ref|YP_002820327.1| ribonuclease D [Vibrio cholerae O395]
gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
gi|379741809|ref|YP_005333778.1| ribonuclease D [Vibrio cholerae IEC224]
gi|418350296|ref|ZP_12955027.1| ribonuclease D [Vibrio cholerae HC-43A1]
gi|421325552|ref|ZP_15776076.1| ribonuclease D [Vibrio cholerae CP1041(14)]
gi|421340138|ref|ZP_15790570.1| ribonuclease D [Vibrio cholerae HC-20A2]
gi|422897087|ref|ZP_16934537.1| ribonuclease D [Vibrio cholerae HC-40A1]
gi|423895422|ref|ZP_17727169.1| ribonuclease D [Vibrio cholerae HC-62A1]
gi|424027631|ref|ZP_17767234.1| ribonuclease D [Vibrio cholerae HC-69A1]
gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
gi|341622178|gb|EGS47861.1| ribonuclease D [Vibrio cholerae HC-40A1]
gi|356444792|gb|EHH97601.1| ribonuclease D [Vibrio cholerae HC-43A1]
gi|378795319|gb|AFC58790.1| ribonuclease D [Vibrio cholerae IEC224]
gi|395917390|gb|EJH28218.1| ribonuclease D [Vibrio cholerae CP1041(14)]
gi|395939421|gb|EJH50103.1| ribonuclease D [Vibrio cholerae HC-20A2]
gi|408655222|gb|EKL26347.1| ribonuclease D [Vibrio cholerae HC-62A1]
gi|408878934|gb|EKM17927.1| ribonuclease D [Vibrio cholerae HC-69A1]
Length = 381
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+K + ++W RPL Q+ YAA D F LL +Y+ L +Q + G
Sbjct: 138 LDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAG 182
>gi|398875377|ref|ZP_10630554.1| ribonuclease D [Pseudomonas sp. GM67]
gi|398886982|ref|ZP_10641816.1| ribonuclease D [Pseudomonas sp. GM60]
gi|398186628|gb|EJM73998.1| ribonuclease D [Pseudomonas sp. GM60]
gi|398208032|gb|EJM94773.1| ribonuclease D [Pseudomonas sp. GM67]
Length = 377
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVF 165
>gi|84995770|ref|XP_952607.1| DNA binding protein [Theileria annulata strain Ankara]
gi|65302768|emb|CAI74875.1| DNA binding protein, putative [Theileria annulata]
Length = 247
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
P SL LNK+ Q SNWE L P QISYA+ DA+ +++ L+
Sbjct: 177 PASLKNATESVLNLKLNKKQQCSNWEADKLVPDQISYASTDAWVTREIFIKLN 229
>gi|407365829|ref|ZP_11112361.1| ribonuclease D [Pseudomonas mandelii JR-1]
Length = 377
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVF 165
>gi|398839457|ref|ZP_10596704.1| ribonuclease D [Pseudomonas sp. GM102]
gi|398906633|ref|ZP_10653534.1| ribonuclease D [Pseudomonas sp. GM50]
gi|398112791|gb|EJM02645.1| ribonuclease D [Pseudomonas sp. GM102]
gi|398172749|gb|EJM60605.1| ribonuclease D [Pseudomonas sp. GM50]
Length = 377
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVF 165
>gi|153823321|ref|ZP_01975988.1| ribonuclease D, partial [Vibrio cholerae B33]
gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
Length = 246
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV L+K + ++W RPL Q+ YAA D F LL +Y+ L +Q +
Sbjct: 113 GLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQ 172
Query: 69 QG 70
G
Sbjct: 173 AG 174
>gi|398861072|ref|ZP_10616709.1| ribonuclease D [Pseudomonas sp. GM79]
gi|398233675|gb|EJN19587.1| ribonuclease D [Pseudomonas sp. GM79]
Length = 377
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVF 165
>gi|425065567|ref|ZP_18468687.1| Ribonuclease D [Pasteurella multocida subsp. gallicida P1059]
gi|404383943|gb|EJZ80388.1| Ribonuclease D [Pasteurella multocida subsp. gallicida P1059]
Length = 383
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQNYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|398941935|ref|ZP_10670028.1| ribonuclease D [Pseudomonas sp. GM41(2012)]
gi|398161300|gb|EJM49536.1| ribonuclease D [Pseudomonas sp. GM41(2012)]
Length = 377
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDALHLAEVF 165
>gi|326918448|ref|XP_003205500.1| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase-like [Meleagris gallopavo]
Length = 1569
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL+ LV FGK L +K + NWE PL Q YAA DA+ L +YQ L +
Sbjct: 257 SLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGLIIYQKLKN 310
>gi|384919547|ref|ZP_10019593.1| ribonuclease D [Citreicella sp. 357]
gi|384466572|gb|EIE51071.1| ribonuclease D [Citreicella sp. 357]
Length = 385
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + +L+K +F++W RPL +Q +YA D L +Y+ L + R
Sbjct: 116 GEQVGYETLVKRICKASLDKSSRFTDWSRRPLTDAQKTYALADVTHLRGIYEYLAAELDR 175
Query: 69 QG 70
G
Sbjct: 176 SG 177
>gi|336424168|ref|ZP_08604211.1| hypothetical protein HMPREF0994_00217 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336007836|gb|EGN37856.1| hypothetical protein HMPREF0994_00217 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 580
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 9 GSPQ--SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P+ SL+ + G L+K +Q +W L +Q+ YAALD+ LLQ+++ L +Q
Sbjct: 117 GGPRKVSLAAVSSHYLGTELDKTEQTGDWSG-ALTDTQLEYAALDSRILLQLWKCLKEQL 175
Query: 67 ARQGIE 72
G+E
Sbjct: 176 RENGLE 181
>gi|227821514|ref|YP_002825484.1| ribonuclease D [Sinorhizobium fredii NGR234]
gi|227340513|gb|ACP24731.1| ribonuclease D [Sinorhizobium fredii NGR234]
Length = 383
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L + R
Sbjct: 110 GDSVSYDQLVSRIKNVQIDKSSRFTDWSRRPLTDKQLDYALADVTHLRDVYHYLKAELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|21243147|ref|NP_642729.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
gi|21108668|gb|AAM37265.1| ribonuclease D [Xanthomonas axonopodis pv. citri str. 306]
Length = 363
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQG 172
>gi|374387211|ref|ZP_09644698.1| hypothetical protein HMPREF9449_03084 [Odoribacter laneus YIT
12061]
gi|373222606|gb|EHP44976.1| hypothetical protein HMPREF9449_03084 [Odoribacter laneus YIT
12061]
Length = 180
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+S S L+ F ++K+ + SNW+ L SQI YAA DA+ L++Y+ L ++
Sbjct: 127 KSFSKLMAIIFQVKISKRQRVSNWDAPVLTSSQIKYAATDAWGALRMYEELMNR 180
>gi|339488844|ref|YP_004703372.1| ribonuclease D [Pseudomonas putida S16]
gi|431803860|ref|YP_007230763.1| ribonuclease D [Pseudomonas putida HB3267]
gi|338839687|gb|AEJ14492.1| ribonuclease D [Pseudomonas putida S16]
gi|430794625|gb|AGA74820.1| ribonuclease D [Pseudomonas putida HB3267]
Length = 377
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV G L K + S+W RPL +Q+SYAA DA L +++ VL
Sbjct: 115 GFSMGYSRLVQDVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVL 168
>gi|431798163|ref|YP_007225067.1| ribonuclease D [Echinicola vietnamensis DSM 17526]
gi|430788928|gb|AGA79057.1| ribonuclease D [Echinicola vietnamensis DSM 17526]
Length = 203
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
++LS +VL ++K +Q SNWE L P Q YAA DA+ L+V+ L+ +
Sbjct: 141 RNLSAMVLNI---RISKSEQVSNWEAEELTPKQQLYAATDAWACLEVFNELYSK 191
>gi|427730149|ref|YP_007076386.1| ribonuclease D [Nostoc sp. PCC 7524]
gi|427366068|gb|AFY48789.1| ribonuclease D [Nostoc sp. PCC 7524]
Length = 306
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
Q+L+T + C ++KQ+Q S+W RPL QI YA LD L Q++Q L
Sbjct: 126 QTLATEL--CNFNYIDKQEQSSDWGRRPLSEEQIEYAYLDCIYLAQIHQGL 174
>gi|389780823|ref|ZP_10194356.1| ribonuclease D [Rhodanobacter spathiphylli B39]
gi|388435967|gb|EIL92855.1| ribonuclease D [Rhodanobacter spathiphylli B39]
Length = 371
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
S LV + G L+K + S+W RPL SQ SYAALD L +++ L+++
Sbjct: 123 SYRALVAELAGDELDKGETRSDWLQRPLTASQRSYAALDVVYLKTIHEQLNER 175
>gi|313673321|ref|YP_004051432.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
gi|312940077|gb|ADR19269.1| 3'-5' exonuclease [Calditerrivibrio nitroreducens DSM 19672]
Length = 201
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 23 GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
K + K Q SNW+ PL P Q+ YAA DA+ L++Y+
Sbjct: 158 NKRIIKSSQTSNWDKYPLTPKQMLYAATDAWICLKIYK 195
>gi|441169030|ref|ZP_20969102.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440615515|gb|ELQ78703.1| ribonuclease D [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 385
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L +V G L K +W RPL + YAALD L+ + L D+ +RQG
Sbjct: 112 LGAMVENVLGYALEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEDELSRQG 168
>gi|383310375|ref|YP_005363185.1| ribonuclease D [Pasteurella multocida subsp. multocida str. HN06]
gi|380871647|gb|AFF24014.1| ribonuclease D [Pasteurella multocida subsp. multocida str. HN06]
Length = 383
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLVYAAADVWYLLPLYQRMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|381171447|ref|ZP_09880592.1| ribonuclease D [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|390990914|ref|ZP_10261191.1| ribonuclease D [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|418516452|ref|ZP_13082625.1| ribonuclease D [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|372554366|emb|CCF68166.1| ribonuclease D [Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|380688082|emb|CCG37079.1| ribonuclease D [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|410706731|gb|EKQ65188.1| ribonuclease D [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 363
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQG 172
>gi|260772433|ref|ZP_05881349.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
gi|260611572|gb|EEX36775.1| ribonuclease D [Vibrio metschnikovii CIP 69.14]
Length = 267
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLSSHA 85
L+K + ++W RPL Q+ YAA D F LL +++ L D+ + G VL
Sbjct: 25 LDKSESRTDWLARPLSEKQLEYAAADVFYLLPMFEQLLDKVTQAG-----WWDAVLQESQ 79
Query: 86 VTTKKSTILYFSTVSGLDTKEHRQL 110
+ +K T ++ + + L+ K QL
Sbjct: 80 LQVEKRTRVFDAQFAYLEIKGAWQL 104
>gi|296129572|ref|YP_003636822.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
gi|296021387|gb|ADG74623.1| 3'-5' exonuclease [Cellulomonas flavigena DSM 20109]
Length = 417
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V G L K+ +W RPL + YAALD L++V QVL ++ A G
Sbjct: 145 LAAVVADTLGLGLAKEHSAVDWSTRPLPTEWLRYAALDVEVLVEVRQVLAERLAVSG 201
>gi|452750774|ref|ZP_21950521.1| Ribonuclease D [alpha proteobacterium JLT2015]
gi|451961968|gb|EMD84377.1| Ribonuclease D [alpha proteobacterium JLT2015]
Length = 387
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S +TLV G TL+K +F++W RPL Q+ YA D L +++
Sbjct: 114 GEQVSYATLVSHYLGHTLDKGARFTDWGRRPLDQRQLDYAIADVTHLAEIF 164
>gi|420242846|ref|ZP_14746836.1| ribonuclease D [Rhizobium sp. CF080]
gi|398065160|gb|EJL56813.1| ribonuclease D [Rhizobium sp. CF080]
Length = 381
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSVSYDQLVSRIKDVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLFLKAQLER 169
Query: 69 QGIELGPLLTEVLS 82
+G L LTE ++
Sbjct: 170 EGRAL--WLTEEMA 181
>gi|407782079|ref|ZP_11129294.1| ribonuclease D [Oceanibaculum indicum P24]
gi|407206552|gb|EKE76503.1| ribonuclease D [Oceanibaculum indicum P24]
Length = 390
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TL K ++K +F++W +RPL P Q+ YA D L +Y L +
Sbjct: 113 GDSVGYETLATKLVNARIDKSSRFTDWSHRPLAPHQLDYALADVTHLRIIYDKLSAMLEK 172
Query: 69 QG 70
G
Sbjct: 173 NG 174
>gi|402701916|ref|ZP_10849895.1| ribonuclease D [Pseudomonas fragi A22]
Length = 377
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + L K + S+W RPL +QISYAA DA L +VY +L
Sbjct: 115 GFSMGYSRLVKEVLDLDLPKGETRSDWLQRPLSETQISYAAEDALHLAEVYVLL 168
>gi|303235739|ref|ZP_07322346.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN]
gi|302484186|gb|EFL47174.1| 3'-5' exonuclease [Prevotella disiens FB035-09AN]
Length = 230
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL L F + + K++Q SNWE L Q YAA DA+ +Q+Y+ L
Sbjct: 148 SLQKLYANLFHERITKREQLSNWEAPILSDKQKLYAATDAWACIQIYERL 197
>gi|170742646|ref|YP_001771301.1| ribonuclease D [Methylobacterium sp. 4-46]
gi|168196920|gb|ACA18867.1| ribonuclease D [Methylobacterium sp. 4-46]
Length = 394
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV ++K +F++W RPL +Q++YA D L++VY+ L Q
Sbjct: 113 GDSVSYEQLVNDVAKAKVDKSSRFTDWSRRPLSEAQLTYALSDVTHLIKVYEALARQ 169
>gi|434404737|ref|YP_007147622.1| ribonuclease D [Cylindrospermum stagnale PCC 7417]
gi|428258992|gb|AFZ24942.1| ribonuclease D [Cylindrospermum stagnale PCC 7417]
Length = 306
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
C ++KQ+Q S+W RPL QI YA LD L QV+
Sbjct: 133 CKFNNIDKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQVH 171
>gi|148827593|ref|YP_001292346.1| ribonuclease D [Haemophilus influenzae PittGG]
gi|148718835|gb|ABQ99962.1| ribonuclease D [Haemophilus influenzae PittGG]
Length = 401
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNIEIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
Query: 69 QGIE 72
E
Sbjct: 200 TPWE 203
>gi|336256400|ref|XP_003343408.1| hypothetical protein SMAC_10790 [Sordaria macrospora k-hell]
Length = 134
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDA 52
QG S LV G T++K +F++W RPL QI YA DA
Sbjct: 88 QGEQVGYSNLVDAYLGITVDKGARFTDWSRRPLDDRQIDYAIADA 132
>gi|229820453|ref|YP_002881979.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
gi|229566366|gb|ACQ80217.1| 3'-5' exonuclease [Beutenbergia cavernae DSM 12333]
Length = 416
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G TL K+ +W RPLR + YAALD L+++ L R G
Sbjct: 128 LAAIVEQELGLTLAKEHSAVDWSTRPLREDWLRYAALDVEVLVELRDALERDLVRAG 184
>gi|398958756|ref|ZP_10677721.1| ribonuclease D [Pseudomonas sp. GM33]
gi|398145975|gb|EJM34744.1| ribonuclease D [Pseudomonas sp. GM33]
Length = 377
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|414166573|ref|ZP_11422805.1| ribonuclease D [Afipia clevelandensis ATCC 49720]
gi|410892417|gb|EKS40209.1| ribonuclease D [Afipia clevelandensis ATCC 49720]
Length = 382
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G +K +F++W NRPL QI+YA D L V+ L +
Sbjct: 112 GDSIAYDQLVERITGHRPDKTHRFTDWSNRPLTQDQITYAVADVTHLRDVFAALDADLKK 171
Query: 69 QG 70
+G
Sbjct: 172 RG 173
>gi|414173189|ref|ZP_11427952.1| ribonuclease D [Afipia broomeae ATCC 49717]
gi|410891841|gb|EKS39637.1| ribonuclease D [Afipia broomeae ATCC 49717]
Length = 382
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G +K +F++W NRPL QI+YA D L V+ L +
Sbjct: 112 GDSIAYDQLVERITGHRPDKTHRFTDWSNRPLTQDQITYAVADVTHLRDVFAALDADLKK 171
Query: 69 QG 70
+G
Sbjct: 172 RG 173
>gi|338974205|ref|ZP_08629567.1| ribonuclease D [Bradyrhizobiaceae bacterium SG-6C]
gi|338232932|gb|EGP08060.1| ribonuclease D [Bradyrhizobiaceae bacterium SG-6C]
Length = 382
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G +K +F++W NRPL QI+YA D L V+ L +
Sbjct: 112 GDSIAYDQLVERITGHRPDKTHRFTDWSNRPLTQDQITYAVADVTHLRDVFAALDADLKK 171
Query: 69 QG 70
+G
Sbjct: 172 RG 173
>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
Length = 350
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV L+K + ++W RPL Q+ YAA D F LL +Y+ L +Q +
Sbjct: 113 GLSTGFAALVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQ 172
Query: 69 QG 70
G
Sbjct: 173 AG 174
>gi|82793920|ref|XP_728231.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23484482|gb|EAA19796.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1841
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 15 STLVLKCFGKTL------NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
+TL +K FGK L NK+ Q NW RPL + YA LD L + Y ++ +
Sbjct: 1776 ATLSVKLFGKALFPDKDVNKEYQIINWNFRPLSFKSLEYAILDVLILKKFYNLIQSK 1832
>gi|218263130|ref|ZP_03477349.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
DSM 18315]
gi|423341720|ref|ZP_17319435.1| hypothetical protein HMPREF1077_00865 [Parabacteroides johnsonii
CL02T12C29]
gi|218222915|gb|EEC95565.1| hypothetical protein PRABACTJOHN_03030 [Parabacteroides johnsonii
DSM 18315]
gi|409220608|gb|EKN13563.1| hypothetical protein HMPREF1077_00865 [Parabacteroides johnsonii
CL02T12C29]
Length = 193
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + SNWE L +Q YAALDA+ L++Y L
Sbjct: 141 SLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLK 191
>gi|418523069|ref|ZP_13089094.1| ribonuclease D [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410700339|gb|EKQ58898.1| ribonuclease D [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
Length = 363
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV + G L K + S+W RPL P+Q+ YAA D L ++ L + A QG
Sbjct: 119 LVQEVSGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDELTRRLAEQG 172
>gi|302037758|ref|YP_003798080.1| ribonuclease D [Candidatus Nitrospira defluvii]
gi|300605822|emb|CBK42155.1| Ribonuclease D [Candidatus Nitrospira defluvii]
Length = 401
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ + + LV + G L+K F+NW RPL Q+ YA D LL V++ L + +
Sbjct: 121 GAQTAYANLVQRVQGVKLDKAHTFTNWSQRPLSREQLVYALDDVTFLLPVHRHLRQKLSV 180
Query: 69 QG 70
G
Sbjct: 181 MG 182
>gi|260426693|ref|ZP_05780672.1| ribonuclease D [Citreicella sp. SE45]
gi|260421185|gb|EEX14436.1| ribonuclease D [Citreicella sp. SE45]
Length = 385
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q YA D L +Y+ L + R
Sbjct: 116 GEQVGYETLVKRIAKQALDKSSRFTDWSRRPLTEAQKKYALADVTHLRVIYEYLAAELER 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|393214628|gb|EJD00121.1| hypothetical protein FOMMEDRAFT_30783 [Fomitiporia mediterranea
MF3/22]
Length = 709
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G+ +L+T++ GK L+K + SNWE PL +Q+ YAA DA VY+ L +
Sbjct: 192 GTLINLATVIAMYTGKELSKGSVRTSNWEGVPLSEAQLEYAANDAHSAFIVYEKLIEMAK 251
Query: 68 RQGIELGPLLTEVLSSHAVTTKKSTILYFS 97
+ L P A TK LYF+
Sbjct: 252 EANVVLRP---------AEYTKGVEALYFN 272
>gi|423314256|ref|ZP_17292190.1| hypothetical protein HMPREF1058_02802 [Bacteroides vulgatus
CL09T03C04]
gi|392683026|gb|EIY76364.1| hypothetical protein HMPREF1058_02802 [Bacteroides vulgatus
CL09T03C04]
Length = 216
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ +SL + FG+ ++K + SNWE L Q YAA DA+ +++Y L
Sbjct: 138 ADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCL 190
>gi|336320604|ref|YP_004600572.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
gi|336104185|gb|AEI12004.1| 3'-5' exonuclease [[Cellvibrio] gilvus ATCC 13127]
Length = 443
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V G L K+ +W RPL + YAALD L++V QVL ++ A G
Sbjct: 168 LAAVVADTLGLGLAKEHSAVDWSTRPLPAEWLRYAALDVEVLVEVRQVLAERLAVAG 224
>gi|294775292|ref|ZP_06740815.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
gi|294450869|gb|EFG19346.1| 3'-5' exonuclease [Bacteroides vulgatus PC510]
Length = 216
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ +SL + FG+ ++K + SNWE L Q YAA DA+ +++Y L
Sbjct: 138 ADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCL 190
>gi|429328448|gb|AFZ80208.1| DNA polymerase I family member protein [Babesia equi]
Length = 1713
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
L ++ + + L+K QFS+W PL QI YA+ DA LL +Y +L ++ ++ ++
Sbjct: 1259 LGSVAERYYNLVLDKSQQFSDWSLVPLFEEQILYASRDANVLLPLYVILKEKLHKEKLD 1317
>gi|417855792|ref|ZP_12500863.1| ribonuclease D [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338215402|gb|EGP01681.1| ribonuclease D [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 391
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 130 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLVYAAADVWYLLPLYQRMQEAL 189
Query: 67 AR 68
A+
Sbjct: 190 AQ 191
>gi|242218433|ref|XP_002475007.1| predicted protein [Postia placenta Mad-698-R]
gi|220725829|gb|EED79800.1| predicted protein [Postia placenta Mad-698-R]
Length = 483
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 13 SLSTLVLKCFGKTLNK-QDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL+ +V ++L+K + + NWE PL QI+YAA DA C L VY+ L + G+
Sbjct: 271 SLARMVEHYTRRSLDKGKVRIGNWEAAPLSQEQITYAANDAHCALVVYKRLIEIATEHGL 330
Query: 72 EL 73
L
Sbjct: 331 CL 332
>gi|154494239|ref|ZP_02033559.1| hypothetical protein PARMER_03589 [Parabacteroides merdae ATCC
43184]
gi|423724766|ref|ZP_17698908.1| hypothetical protein HMPREF1078_02805 [Parabacteroides merdae
CL09T00C40]
gi|154086101|gb|EDN85146.1| 3'-5' exonuclease [Parabacteroides merdae ATCC 43184]
gi|409236726|gb|EKN29532.1| hypothetical protein HMPREF1078_02805 [Parabacteroides merdae
CL09T00C40]
Length = 193
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + SNWE L +Q YAALDA+ L++Y L
Sbjct: 141 SLQKIYAILFNKKISKGQRLSNWEADVLSDAQKKYAALDAWACLKIYNQLK 191
>gi|426408211|ref|YP_007028310.1| ribonuclease D [Pseudomonas sp. UW4]
gi|426266428|gb|AFY18505.1| ribonuclease D [Pseudomonas sp. UW4]
Length = 377
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|398888278|ref|ZP_10642709.1| ribonuclease D [Pseudomonas sp. GM55]
gi|398191107|gb|EJM78308.1| ribonuclease D [Pseudomonas sp. GM55]
Length = 377
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|398925909|ref|ZP_10662148.1| ribonuclease D [Pseudomonas sp. GM48]
gi|398171503|gb|EJM59405.1| ribonuclease D [Pseudomonas sp. GM48]
Length = 377
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|150006113|ref|YP_001300857.1| hypothetical protein BVU_3624 [Bacteroides vulgatus ATCC 8482]
gi|149934537|gb|ABR41235.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 216
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ +SL + FG+ ++K + SNWE L Q YAA DA+ +++Y L
Sbjct: 138 ADRSLQKIFANLFGQKISKSQRLSNWEAEVLSEGQKLYAATDAWACVEIYNCL 190
>gi|440778250|ref|ZP_20957016.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S5]
gi|436721353|gb|ELP45488.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S5]
Length = 416
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 132 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQG 189
>gi|41408900|ref|NP_961736.1| hypothetical protein MAP2802 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397259|gb|AAS05119.1| hypothetical protein MAP_2802 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 428
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 144 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQG 201
>gi|402819435|ref|ZP_10869003.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
gi|402511582|gb|EJW21843.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
Length = 383
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + T++K +F++W RPL Q++YA D L +++ L ++ A
Sbjct: 112 GDSISYEALVKRIPQGTIDKGSRFTDWSRRPLNDDQLTYALADVTYLRDIFENLENELAT 171
Query: 69 QG 70
G
Sbjct: 172 TG 173
>gi|359452611|ref|ZP_09241954.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
gi|358050322|dbj|GAA78203.1| ribonuclease D [Pseudoalteromonas sp. BSi20495]
Length = 376
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+G+ + +V + G ++K + +NW RPL Q+ YAA D F LL ++++
Sbjct: 112 EGNCMGFALMVKELLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLI 166
>gi|347738087|ref|ZP_08869693.1| Ribonuclease D [Azospirillum amazonense Y2]
gi|346918992|gb|EGY00722.1| Ribonuclease D [Azospirillum amazonense Y2]
Length = 383
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TL+ K ++K +F++W NRPL Q++YA D L Y+ + + +
Sbjct: 112 GDSVGYETLITKLTNARIDKSSRFTDWSNRPLTDRQLTYALSDVTHLRPAYEKIRRRLDK 171
Query: 69 QGIE 72
G E
Sbjct: 172 TGRE 175
>gi|400536794|ref|ZP_10800328.1| ribonuclease D [Mycobacterium colombiense CECT 3035]
gi|400329807|gb|EJO87306.1| ribonuclease D [Mycobacterium colombiense CECT 3035]
Length = 431
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 151 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQG 208
>gi|417749597|ref|ZP_12397989.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
gi|336458819|gb|EGO37776.1| ribonuclease D [Mycobacterium avium subsp. paratuberculosis S397]
Length = 428
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 144 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQG 201
>gi|300727989|ref|ZP_07061367.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14]
gi|299774831|gb|EFI71445.1| 3- 5 exonuclease domain protein [Prevotella bryantii B14]
Length = 229
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + +NWE L+ SQ YAA DA+ +Q+Y L + +
Sbjct: 140 KSLQKIYANLFHQKISKSQRLTNWEADVLKDSQKLYAATDAWTCIQIYDELQRLISTREY 199
Query: 72 ELGPLLTEVLSSHAVTTKKSTILYF 96
EL + V + T+ T Y
Sbjct: 200 ELEKVTELVPEEKTIVTETHTEEYI 224
>gi|118463563|ref|YP_882753.1| ribonuclease D [Mycobacterium avium 104]
gi|118164850|gb|ABK65747.1| ribonuclease D [Mycobacterium avium 104]
Length = 428
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 144 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAEQG 201
>gi|414071398|ref|ZP_11407368.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
gi|410806239|gb|EKS12235.1| ribonuclease D [Pseudoalteromonas sp. Bsw20308]
Length = 376
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+G+ + +V + G ++K + +NW RPL Q+ YAA D F LL ++++
Sbjct: 112 EGNCMGFALMVKELLGIEIDKSESRTNWLQRPLTTKQLDYAAADTFHLLPCFKLI 166
>gi|423347256|ref|ZP_17324943.1| hypothetical protein HMPREF1060_02615 [Parabacteroides merdae
CL03T12C32]
gi|409218513|gb|EKN11484.1| hypothetical protein HMPREF1060_02615 [Parabacteroides merdae
CL03T12C32]
Length = 193
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + SNWE L +Q YAALDA+ L++Y L
Sbjct: 141 SLQKIYAILFNKKISKGQRLSNWEADILSDAQKKYAALDAWACLKIYNQLK 191
>gi|409081078|gb|EKM81437.1| hypothetical protein AGABI1DRAFT_125822 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 3350
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 14 LSTLVLKCFGKTLNKQDQFSN---WENRPLRPSQISYAALDAFCLLQVYQVL 62
L+ +VLK K LNK WENR L QI+YAALDA+ L +Y+ L
Sbjct: 588 LTAIVLK---KRLNKNTPLRTSQLWENRELSDEQITYAALDAYASLLIYEDL 636
>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
Length = 400
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
LV G L+K QF+ W RPL P+Q+ YAA D L +V+
Sbjct: 129 LVDALLGVQLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVW 171
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ + K FG L+KQ Q ++W RPL I YA D L+++Y+ L + +G
Sbjct: 122 LAAQLRKRFGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKG 178
>gi|422018217|ref|ZP_16364774.1| ribonuclease D [Providencia alcalifaciens Dmel2]
gi|414104509|gb|EKT66074.1| ribonuclease D [Providencia alcalifaciens Dmel2]
Length = 373
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S +TLV + G L+K + ++W RPL Q YA D LL + ++L ++
Sbjct: 111 GYPISCGFATLVAEHLGVELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKV 170
Query: 67 ARQGI 71
+ +G+
Sbjct: 171 SEEGL 175
>gi|15602571|ref|NP_245643.1| ribonuclease D [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720994|gb|AAK02790.1| Rnd [Pasteurella multocida subsp. multocida str. Pm70]
Length = 383
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|398871648|ref|ZP_10626961.1| ribonuclease D [Pseudomonas sp. GM74]
gi|398205901|gb|EJM92679.1| ribonuclease D [Pseudomonas sp. GM74]
Length = 377
Score = 39.7 bits (91), Expect = 0.27, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|378774408|ref|YP_005176651.1| ribonuclease D [Pasteurella multocida 36950]
gi|356596956|gb|AET15682.1| ribonuclease D [Pasteurella multocida 36950]
Length = 383
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|409198156|ref|ZP_11226819.1| 3'-5' exonuclease [Marinilabilia salmonicolor JCM 21150]
Length = 206
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L G ++K+ + SNWE + L QI YAA DA+ L++Y L +
Sbjct: 137 SLKNLAGLLLGFRVSKRQRLSNWEAQELSEGQILYAATDAWVSLEIYNKLKE 188
>gi|398993941|ref|ZP_10696872.1| ribonuclease D [Pseudomonas sp. GM21]
gi|398133446|gb|EJM22646.1| ribonuclease D [Pseudomonas sp. GM21]
Length = 377
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|339022581|ref|ZP_08646510.1| ribonuclease D [Acetobacter tropicalis NBRC 101654]
gi|338750416|dbj|GAA09814.1| ribonuclease D [Acetobacter tropicalis NBRC 101654]
Length = 223
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L + G ++K Q S+W L+P Q++YAA D CL +++ + R+G
Sbjct: 132 HGLAALCRELLGVEMSKHQQTSDWGAPDLKPEQLAYAASDVLCLHALWEKMDALLQREG 190
>gi|434391355|ref|YP_007126302.1| 3'-5' exonuclease [Gloeocapsa sp. PCC 7428]
gi|428263196|gb|AFZ29142.1| 3'-5' exonuclease [Gloeocapsa sp. PCC 7428]
Length = 309
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL TLV + ++K +Q S+W RPL Q++YA +D L V+Q L
Sbjct: 124 SLKTLVEALYHINVDKTEQTSDWGQRPLSDIQLNYAKMDPVYLAMVHQKL 173
>gi|425063390|ref|ZP_18466515.1| Ribonuclease D [Pasteurella multocida subsp. gallicida X73]
gi|404382953|gb|EJZ79410.1| Ribonuclease D [Pasteurella multocida subsp. gallicida X73]
Length = 383
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|398912875|ref|ZP_10656174.1| ribonuclease D [Pseudomonas sp. GM49]
gi|398181586|gb|EJM69141.1| ribonuclease D [Pseudomonas sp. GM49]
Length = 377
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAEVF 165
>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
Length = 371
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G ++LV G L+K + ++W RPL Q+ YAA D LL +Y+ L ++ +
Sbjct: 113 GLSTGFASLVESYLGVELDKSESRTDWLARPLTDKQLDYAAADVHYLLPLYEKLLEEITQ 172
Query: 69 QG 70
G
Sbjct: 173 AG 174
>gi|312139461|ref|YP_004006797.1| rnase d [Rhodococcus equi 103S]
gi|311888800|emb|CBH48112.1| putative RNase D [Rhodococcus equi 103S]
Length = 445
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G L K ++W RPL + ++YAALD LL++ + + + A QG
Sbjct: 167 LAAIVERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQG 223
>gi|298373694|ref|ZP_06983683.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274746|gb|EFI16298.1| 3'-5' exonuclease domain protein [Bacteroidetes oral taxon 274 str.
F0058]
Length = 194
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
FGK ++K Q SNWE + L +Q YAA DA+ ++Y
Sbjct: 148 FGKKISKSQQLSNWEAKILNQAQQIYAATDAWACREIY 185
>gi|325672651|ref|ZP_08152347.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|325556528|gb|EGD26194.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 413
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ +V + G L K ++W RPL + ++YAALD LL++ + + + A QG
Sbjct: 135 LAAIVERTLGLELRKGHGAADWSTRPLPDAWLNYAALDVEVLLELREAMATELAAQG 191
>gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484]
Length = 575
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL ++ + G+ L+K Q S+W +R L +Q+ YAALD + ++ +L
Sbjct: 110 HSLQSVAMHYLGQVLDKSLQLSDWGSRVLTKAQLEYAALDVVVVRDLFPIL 160
>gi|156083893|ref|XP_001609430.1| exosome component 10 [Babesia bovis T2Bo]
gi|154796681|gb|EDO05862.1| exosome component 10, putative [Babesia bovis]
Length = 879
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SLS+LV G L+K Q ++W RP+ ++YA D LL +Y L + Q +
Sbjct: 430 HSLSSLVRHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKNTALEQDL 489
Query: 72 E 72
+
Sbjct: 490 K 490
>gi|421263442|ref|ZP_15714489.1| ribonuclease D [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401689568|gb|EJS84980.1| ribonuclease D [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 391
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 130 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 189
Query: 67 AR 68
A+
Sbjct: 190 AQ 191
>gi|53712323|ref|YP_098315.1| hypothetical protein BF1031 [Bacteroides fragilis YCH46]
gi|60680496|ref|YP_210640.1| 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
gi|336408541|ref|ZP_08589032.1| hypothetical protein HMPREF1018_01047 [Bacteroides sp. 2_1_56FAA]
gi|375357352|ref|YP_005110124.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R]
gi|383117263|ref|ZP_09938009.1| hypothetical protein BSHG_0617 [Bacteroides sp. 3_2_5]
gi|423248984|ref|ZP_17230000.1| hypothetical protein HMPREF1066_01010 [Bacteroides fragilis
CL03T00C08]
gi|423256706|ref|ZP_17237634.1| hypothetical protein HMPREF1067_04278 [Bacteroides fragilis
CL03T12C07]
gi|423258685|ref|ZP_17239608.1| hypothetical protein HMPREF1055_01885 [Bacteroides fragilis
CL07T00C01]
gi|423264343|ref|ZP_17243346.1| hypothetical protein HMPREF1056_01033 [Bacteroides fragilis
CL07T12C05]
gi|423269089|ref|ZP_17248061.1| hypothetical protein HMPREF1079_01143 [Bacteroides fragilis
CL05T00C42]
gi|423273350|ref|ZP_17252297.1| hypothetical protein HMPREF1080_00950 [Bacteroides fragilis
CL05T12C13]
gi|423281785|ref|ZP_17260670.1| hypothetical protein HMPREF1204_00208 [Bacteroides fragilis HMW
615]
gi|52215188|dbj|BAD47781.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60491930|emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
gi|251947416|gb|EES87698.1| hypothetical protein BSHG_0617 [Bacteroides sp. 3_2_5]
gi|301162033|emb|CBW21577.1| putative 3'-5' exonuclease [Bacteroides fragilis 638R]
gi|335935762|gb|EGM97710.1| hypothetical protein HMPREF1018_01047 [Bacteroides sp. 2_1_56FAA]
gi|387776265|gb|EIK38365.1| hypothetical protein HMPREF1055_01885 [Bacteroides fragilis
CL07T00C01]
gi|392648705|gb|EIY42393.1| hypothetical protein HMPREF1067_04278 [Bacteroides fragilis
CL03T12C07]
gi|392656531|gb|EIY50169.1| hypothetical protein HMPREF1066_01010 [Bacteroides fragilis
CL03T00C08]
gi|392702398|gb|EIY95544.1| hypothetical protein HMPREF1079_01143 [Bacteroides fragilis
CL05T00C42]
gi|392706609|gb|EIY99732.1| hypothetical protein HMPREF1056_01033 [Bacteroides fragilis
CL07T12C05]
gi|392707951|gb|EIZ01064.1| hypothetical protein HMPREF1080_00950 [Bacteroides fragilis
CL05T12C13]
gi|404582826|gb|EKA87517.1| hypothetical protein HMPREF1204_00208 [Bacteroides fragilis HMW
615]
Length = 216
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L +Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYHLLEELKRTGNY 197
Query: 72 ELGP 75
EL P
Sbjct: 198 ELAP 201
>gi|289665658|ref|ZP_06487239.1| ribonuclease D, partial [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 210
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LV + G L K + S+W RPL PSQ+ YAA D L + HD+ R+ E
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAI----HDELTRRLTE 170
>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
Length = 386
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + +T++K +F++W RPL +Q YA D L +Y+ L + A
Sbjct: 117 GEQVGYETLVKRIAKQTVDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKLAS 176
Query: 69 QG 70
G
Sbjct: 177 SG 178
>gi|265762514|ref|ZP_06091082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255122|gb|EEZ26468.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 216
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L +Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYGILFSEKISKSQRLSNWEADVLTDAQKQYAATDAWACLNIYHLLEELKRTGNY 197
Query: 72 ELGP 75
EL P
Sbjct: 198 ELAP 201
>gi|77457615|ref|YP_347120.1| ribonuclease D [Pseudomonas fluorescens Pf0-1]
gi|398979427|ref|ZP_10688437.1| ribonuclease D [Pseudomonas sp. GM25]
gi|77381618|gb|ABA73131.1| putative ribonuclease [Pseudomonas fluorescens Pf0-1]
gi|398135857|gb|EJM24962.1| ribonuclease D [Pseudomonas sp. GM25]
Length = 377
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|423096745|ref|ZP_17084541.1| ribonuclease D [Pseudomonas fluorescens Q2-87]
gi|397886382|gb|EJL02865.1| ribonuclease D [Pseudomonas fluorescens Q2-87]
Length = 377
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|357384625|ref|YP_004899349.1| ribonuclease D [Pelagibacterium halotolerans B2]
gi|351593262|gb|AEQ51599.1| ribonuclease D [Pelagibacterium halotolerans B2]
Length = 386
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV G+ ++K +F++W +RPL Q++YA D L +Y L +
Sbjct: 111 HGDSVSYDNLVRSVVGEQIDKSSRFTDWSHRPLTEKQLNYALADVTHLRDIYGQLRTE 168
>gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941]
Length = 582
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61
L D +QG SL + + +T++K + +W ++ L Q+ YAA DA LL +++
Sbjct: 113 LLDGGEQGPSYSLEAVAGRYLQETVDKTARREDW-SKELSREQLEYAARDAAILLPLHER 171
Query: 62 LHDQCARQGIELGPL 76
L + R+G LGP+
Sbjct: 172 LQELLEREG--LGPV 184
>gi|421252375|ref|ZP_15708046.1| ribonuclease D [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
gi|401696224|gb|EJS89102.1| ribonuclease D [Pasteurella multocida subsp. multocida str.
Anand1_buffalo]
Length = 298
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 37 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLIYAAADVWYLLPLYQRMQEAL 96
Query: 67 AR 68
A+
Sbjct: 97 AQ 98
>gi|338211062|ref|YP_004655113.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
gi|336304879|gb|AEI47981.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
Length = 383
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LS+++ + G +K+ Q SNW RPL P Q+ YAA D LL + +V ++ Q
Sbjct: 118 LSSVLNELLGVESSKKKQQSNWLKRPLLPLQLEYAATDVIHLLALRKVFAERLQAQN 174
>gi|357059998|ref|ZP_09120772.1| hypothetical protein HMPREF9332_00329 [Alloprevotella rava F0323]
gi|355376888|gb|EHG24128.1| hypothetical protein HMPREF9332_00329 [Alloprevotella rava F0323]
Length = 210
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL L F ++K Q SNWE L P+Q +YAA DA+ + +Y L
Sbjct: 140 SLQKLFANVFHLRISKNAQLSNWEADVLSPAQKTYAATDAYSCIMLYNEL 189
>gi|224824622|ref|ZP_03697729.1| 3'-5' exonuclease [Pseudogulbenkiania ferrooxidans 2002]
gi|224603115|gb|EEG09291.1| 3'-5' exonuclease [Pseudogulbenkiania ferrooxidans 2002]
Length = 222
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G+ Q+++ L +CF K+ K+ SNW + L +Q YA DA+ LQVY L Q
Sbjct: 165 GAVQAVARLFGQCFRKS--KRQSTSNWASPVLSEAQCVYAGNDAYVALQVYHELERQ 219
>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
Length = 384
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S +V C G L+K +F++W RPL Q+ YA D L VY +L
Sbjct: 113 GDSISYDQIVQHCTGHHLDKSSRFTDWSCRPLSEKQLLYALADVTYLRDVYLLL 166
>gi|325297843|ref|YP_004257760.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170]
gi|324317396|gb|ADY35287.1| 3'-5' exonuclease [Bacteroides salanitronis DSM 18170]
Length = 210
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FGK ++K + SNWE L +Q YAA DA+ +++Y L +
Sbjct: 140 KSLQKIYALLFGKKISKTQRLSNWEADVLTEAQQLYAATDAWACVEIYTYLEE 192
>gi|404486095|ref|ZP_11021289.1| hypothetical protein HMPREF9448_01716 [Barnesiella intestinihominis
YIT 11860]
gi|404337423|gb|EJZ63877.1| hypothetical protein HMPREF9448_01716 [Barnesiella intestinihominis
YIT 11860]
Length = 211
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
QSL + GK ++K + SNWE L +Q YAA DA+ +++Y+VL
Sbjct: 144 QSLQKIYGIVIGKKISKGQRLSNWEADHLTENQQLYAATDAWSCIKIYEVL 194
>gi|184201057|ref|YP_001855264.1| putative ribonuclease D [Kocuria rhizophila DC2201]
gi|183581287|dbj|BAG29758.1| putative ribonuclease D [Kocuria rhizophila DC2201]
Length = 420
Score = 39.3 bits (90), Expect = 0.30, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+++ + G TL+K+ +W RPL ++YAALD L+Q+ ++ AR G
Sbjct: 137 LASMTEELLGFTLSKEHSAVDWSQRPLPVDWLNYAALDVEVLVQLRWATEERLARAG 193
>gi|212711905|ref|ZP_03320033.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
30120]
gi|212685427|gb|EEB44955.1| hypothetical protein PROVALCAL_02980 [Providencia alcalifaciens DSM
30120]
Length = 373
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S +TLV + G L+K + ++W RPL Q YA D LL + ++L ++
Sbjct: 111 GYPISCGFATLVAEHLGIELDKSESRTDWLARPLSEKQCDYATADVLYLLPLAKILMEKV 170
Query: 67 ARQGI 71
+ +G+
Sbjct: 171 SEEGL 175
>gi|398989100|ref|ZP_10692585.1| ribonuclease D [Pseudomonas sp. GM24]
gi|399012536|ref|ZP_10714856.1| ribonuclease D [Pseudomonas sp. GM16]
gi|398115369|gb|EJM05153.1| ribonuclease D [Pseudomonas sp. GM16]
gi|398148360|gb|EJM37041.1| ribonuclease D [Pseudomonas sp. GM24]
Length = 377
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+ G T NK Q ++W +RPL I YA D LL +Y ++ + R+
Sbjct: 80 SLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTS 139
Query: 73 LGPLLTEV 80
LL EV
Sbjct: 140 ENDLLLEV 147
>gi|254419933|ref|ZP_05033657.1| ribonuclease D [Brevundimonas sp. BAL3]
gi|196186110|gb|EDX81086.1| ribonuclease D [Brevundimonas sp. BAL3]
Length = 383
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + +LV + L+K +F++W RPL SQ+ YA D L +Y L D+ +
Sbjct: 111 GEQVAYDSLVRQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKK 170
Query: 69 QG 70
+G
Sbjct: 171 EG 172
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+L G T K+ Q ++W +RPL I YA D LL +Y ++ + ++
Sbjct: 266 SLEHLLLHFCGVTAKKEYQNADWRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQKESTF 325
Query: 73 LGPLLTEV 80
LL EV
Sbjct: 326 ENDLLLEV 333
>gi|421621372|ref|ZP_16062295.1| putative ribonuclease D [Acinetobacter baumannii OIFC074]
gi|421797256|ref|ZP_16233302.1| putative ribonuclease D [Acinetobacter baumannii Naval-21]
gi|408698671|gb|EKL44160.1| putative ribonuclease D [Acinetobacter baumannii OIFC074]
gi|410397337|gb|EKP49589.1| putative ribonuclease D [Acinetobacter baumannii Naval-21]
Length = 374
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAAKDVLYLMQLANHIKDQLKQKGL 173
>gi|424063856|ref|ZP_17801341.1| ribonuclease D [Acinetobacter baumannii Ab44444]
gi|404673745|gb|EKB41516.1| ribonuclease D [Acinetobacter baumannii Ab44444]
Length = 267
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 16 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 66
>gi|417850598|ref|ZP_12496474.1| ribonuclease D [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220545|gb|EGP06030.1| ribonuclease D [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 383
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S L+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + +
Sbjct: 122 GFPNSTGLATLVQHYFQLEIDKGASRTDWLARPLSDNQLVYAAADVWYLLPLYQHMQEAL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|338740923|ref|YP_004677885.1| ribonuclease D (RNase D) [Hyphomicrobium sp. MC1]
gi|337761486|emb|CCB67319.1| ribonuclease D (RNase D) [Hyphomicrobium sp. MC1]
Length = 421
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV K G L+K +F++W RPL Q+ YA D L VY L +
Sbjct: 149 GDSISYVNLVKKTTGVDLDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYVRLKQMLEK 208
Query: 69 QG 70
G
Sbjct: 209 TG 210
>gi|401413034|ref|XP_003885964.1| Ribonuclease D, related [Neospora caninum Liverpool]
gi|325120384|emb|CBZ55938.1| Ribonuclease D, related [Neospora caninum Liverpool]
Length = 1387
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+ L+ G NKQ Q ++W RPL P +YA D L ++ V+ +Q +
Sbjct: 575 SLANLLHTYCGVEANKQYQLADWRRRPLTPEMEAYARSDTHYLPFIFDVMKNQLLSK--- 631
Query: 73 LGPLLTEVLSSHAVT 87
P L LS AVT
Sbjct: 632 --PELGGALSPPAVT 644
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+SL+ L+ K F TL+K+ Q ++W RPL I+Y+ D LL++ +L + +G
Sbjct: 116 RSLAALLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEG 174
>gi|182678372|ref|YP_001832518.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
gi|182634255|gb|ACB95029.1| ribonuclease D [Beijerinckia indica subsp. indica ATCC 9039]
Length = 388
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV +L+K +F++W RPL P+Q+ YA D L +Y L R
Sbjct: 112 GDQISYGDLVQTVTRVSLDKSSRFTDWSRRPLSPAQVDYAIADVTYLRDIYLYL-----R 166
Query: 69 QGIELGPLLTEVLSSHAVTTKKST 92
+ +E L + A+ + ST
Sbjct: 167 RKLETSSRLAWLSDEMALLSSPST 190
>gi|119512751|ref|ZP_01631822.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
gi|119462619|gb|EAW43585.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
Length = 306
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY-QVLHDQCA 67
C ++KQ+Q S+W RPL QI YA LD L QV+ Q+L Q A
Sbjct: 133 CRFNYIDKQEQSSDWGRRPLTEGQIEYAYLDCIYLAQVHLQLLELQVA 180
>gi|387892742|ref|YP_006323039.1| ribonuclease D [Pseudomonas fluorescens A506]
gi|387162947|gb|AFJ58146.1| ribonuclease D [Pseudomonas fluorescens A506]
Length = 377
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV L K + S+W RPL +QISYAA DA L +VY L Q
Sbjct: 115 GFSMGYSRLVQAVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPQ 171
>gi|389685256|ref|ZP_10176580.1| ribonuclease D [Pseudomonas chlororaphis O6]
gi|388550909|gb|EIM14178.1| ribonuclease D [Pseudomonas chlororaphis O6]
Length = 377
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +V+ L
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTQL 168
>gi|443310846|ref|ZP_21040485.1| DNA segregation ATPase, FtsK/SpoIIIE family [Synechocystis sp. PCC
7509]
gi|442779111|gb|ELR89365.1| DNA segregation ATPase, FtsK/SpoIIIE family [Synechocystis sp. PCC
7509]
Length = 885
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
C ++K +Q SNW RPL SQ+ YA LD+ L Q+++ L
Sbjct: 136 CGFSNVDKTEQSSNWRQRPLTNSQLEYANLDSVYLAQIHRRL 177
>gi|427720395|ref|YP_007068389.1| 3'-5' exonuclease [Calothrix sp. PCC 7507]
gi|427352831|gb|AFY35555.1| 3'-5' exonuclease [Calothrix sp. PCC 7507]
Length = 306
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
++L+T++ C ++KQ+Q S+W RPL QI YA LD L QV+
Sbjct: 126 KTLATVL--CDFNNIDKQEQNSDWGKRPLTEEQIDYAYLDCIYLAQVH 171
>gi|399007815|ref|ZP_10710314.1| ribonuclease D [Pseudomonas sp. GM17]
gi|398119266|gb|EJM08970.1| ribonuclease D [Pseudomonas sp. GM17]
Length = 377
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +V+ L
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTRL 168
>gi|428671950|gb|EKX72865.1| 3'-5' exonuclease domain containing protein [Babesia equi]
Length = 742
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL L++ G ++K Q ++W RPL P + YA D L+++Y +L +
Sbjct: 435 RSLDYLLMNLCGVRIDKSYQTADWRKRPLPPEMLKYACGDTHYLIKLYTILKN 487
>gi|425898087|ref|ZP_18874678.1| ribonuclease D [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
gi|397891324|gb|EJL07802.1| ribonuclease D [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
Length = 377
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +V+ L
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVFTRL 168
>gi|302836520|ref|XP_002949820.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f.
nagariensis]
gi|300264729|gb|EFJ48923.1| hypothetical protein VOLCADRAFT_90238 [Volvox carteri f.
nagariensis]
Length = 625
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 2 LTDESQQGSPQSLSTLVLKCFGKTLNKQDQF--SNWENRPLRPSQISYAALDAFCLLQVY 59
+T ++ S SL+ LV + L K + NWE RPL +Q Y ALDA+ L V+
Sbjct: 498 VTTNTEYRSRWSLAALVATVLKRHLPKPNSLRCGNWERRPLDAAQKRYGALDAYAGLAVW 557
Query: 60 QVL 62
L
Sbjct: 558 AAL 560
>gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
gi|384128458|ref|YP_005511071.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6]
gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6]
Length = 576
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
SL + + G+ L+K Q SNW L Q+ YAALD + +Y +L D+
Sbjct: 110 HSLQKVAMHYLGEVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDLYSILLDK 163
>gi|104783019|ref|YP_609517.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
gi|95112006|emb|CAK16733.1| ribonuclease D, processes tRNA [Pseudomonas entomophila L48]
Length = 377
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ L
Sbjct: 115 GFSMGYSRLVQEVLGLELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFSAL 168
>gi|406878482|gb|EKD27373.1| 3'-5' exonuclease [uncultured bacterium]
Length = 342
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRP-LRPSQISYAALDAFCLLQVY 59
+P++L L ++KQ+Q SNW NRP L Q+ YAA DA+ L+VY
Sbjct: 134 TPRTLKALAAIFLQIRISKQEQTSNW-NRPKLTEKQVLYAATDAWVTLEVY 183
>gi|347538650|ref|YP_004846074.1| 3'-5' exonuclease [Pseudogulbenkiania sp. NH8B]
gi|345641827|dbj|BAK75660.1| 3'-5' exonuclease [Pseudogulbenkiania sp. NH8B]
Length = 200
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G+ Q+++ L +CF K+ K+ SNW + L +Q YA DA+ LQVY L Q
Sbjct: 143 GAVQAVARLFGQCFRKS--KRQSTSNWASPVLSEAQRVYAGNDAYVALQVYHELERQ 197
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV-YQVLHDQCAR 68
L+ + K FG L+KQ Q ++W RPL P I YA D L+++ +Q+ D A+
Sbjct: 122 LAAQLRKRFGVELDKQYQRADWSRRPLTPGMIEYAVKDTTLLIELCWQLATDLEAK 177
>gi|405983331|ref|ZP_11041637.1| ribonuclease D [Slackia piriformis YIT 12062]
gi|404388937|gb|EJZ84018.1| ribonuclease D [Slackia piriformis YIT 12062]
Length = 382
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV+ G L K D F++W RPL SQI YA D L +Y+ + + G
Sbjct: 118 LVMSECGVRLKKADSFTDWSRRPLTDSQIEYALDDVIYLPMLYRSMKKKLEELG 171
>gi|332533384|ref|ZP_08409249.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
gi|332037093|gb|EGI73550.1| ribonuclease D [Pseudoalteromonas haloplanktis ANT/505]
Length = 304
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G+ + +V + G ++K + +NW RPL Q+ YAA D F LL ++++ ++
Sbjct: 81 EGNCMGFALMVKELQGIEIDKSESRTNWLQRPLTKKQLDYAAADTFYLLPCFELIIERIN 140
Query: 68 RQG 70
G
Sbjct: 141 AAG 143
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ ++ K FG L+KQ Q ++W RPL I YAA D L+++ L + +G
Sbjct: 122 LAAVLRKRFGVELDKQYQRADWSRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKG 178
>gi|421493809|ref|ZP_15941163.1| RND [Morganella morganii subsp. morganii KT]
gi|455739242|ref|YP_007505508.1| Ribonuclease D [Morganella morganii subsp. morganii KT]
gi|400191853|gb|EJO24995.1| RND [Morganella morganii subsp. morganii KT]
gi|455420805|gb|AGG31135.1| Ribonuclease D [Morganella morganii subsp. morganii KT]
Length = 381
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S +TLV G TL+K + ++W RPL Q YAA D + LL + + L ++
Sbjct: 111 GHPLSCGFATLVETYLGVTLDKSESRTDWLARPLTEKQCEYAAADVYYLLPLAEKLTEKV 170
Query: 67 ARQG 70
G
Sbjct: 171 RAAG 174
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+ G T NK Q ++W +RPL I YA D LL +Y ++ + R+
Sbjct: 148 SLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRESTS 207
Query: 73 LGPLLTEV 80
LL EV
Sbjct: 208 ENDLLLEV 215
>gi|114797633|ref|YP_760953.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
gi|114737807|gb|ABI75932.1| ribonuclease D [Hyphomonas neptunium ATCC 15444]
Length = 388
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S L+ + K ++K QF++W RPL Q+ YA D L Y + D+ +
Sbjct: 117 GDSISYDNLIQRVLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEK 176
Query: 69 QG 70
G
Sbjct: 177 AG 178
>gi|229496277|ref|ZP_04389997.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
35406]
gi|229316855|gb|EEN82768.1| 3'-5' exonuclease domain protein [Porphyromonas endodontalis ATCC
35406]
Length = 213
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
L + FG+ ++K + +NWE+ L Q YAALDA+ L++Y L ++
Sbjct: 141 GLQNIYAIIFGERISKSQRVTNWESPTLSFKQQLYAALDAYACLRIYNALMER 193
>gi|402486257|ref|ZP_10833089.1| ribonuclease D [Rhizobium sp. CCGE 510]
gi|401814913|gb|EJT07243.1| ribonuclease D [Rhizobium sp. CCGE 510]
Length = 381
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSVSYDQLVSRIKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLKAQLDR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|423690595|ref|ZP_17665115.1| ribonuclease D [Pseudomonas fluorescens SS101]
gi|388002106|gb|EIK63435.1| ribonuclease D [Pseudomonas fluorescens SS101]
Length = 377
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV L K + S+W RPL +QISYAA DA L +VY L Q
Sbjct: 115 GFSMGYSRLVQAVLDIELPKGETRSDWLQRPLSETQISYAAEDAVHLAEVYTRLRPQ 171
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
S LV G +L K + ++W RPL P QI YA D L+ Y+V+ +
Sbjct: 114 SYHNLVSTFCGVSLPKTESLTDWSRRPLSPKQIEYALDDVRYLIDAYRVIESK 166
>gi|407261615|ref|XP_003946318.1| PREDICTED: Werner syndrome ATP-dependent helicase homolog [Mus
musculus]
Length = 1434
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 237 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 288
>gi|440747264|ref|ZP_20926524.1| 3'- 5' exonuclease domain protein [Mariniradius saccharolyticus
AK6]
gi|436484510|gb|ELP40502.1| 3'- 5' exonuclease domain protein [Mariniradius saccharolyticus
AK6]
Length = 199
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
++L+ +VL ++K +Q SNWE L Q+ YAA DA+ LQV++ L Q
Sbjct: 141 RNLAAMVLNM---RISKSEQVSNWEASTLTEKQMVYAATDAWACLQVFKKLEYQ 191
>gi|416051386|ref|ZP_11577434.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992819|gb|EGY34196.1| ribonuclease D [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 385
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
+TLV F ++K ++W RPL +Q+ YAA D + LL +Y+ + Q A+ +
Sbjct: 128 GFATLVQHYFQIEIDKGASRTDWLARPLSDAQLQYAAADVWYLLPLYEQMQAQLAQTEWQ 187
Query: 73 LGPLLTE---VLSSHAVTTKKSTILYFS 97
+ E +L+ A TTK+ YF+
Sbjct: 188 -SAVENECEFLLNKRAQTTKEPDSAYFA 214
>gi|398350796|ref|YP_006396260.1| ribonuclease D [Sinorhizobium fredii USDA 257]
gi|390126122|gb|AFL49503.1| ribonuclease D [Sinorhizobium fredii USDA 257]
Length = 383
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L +Y L + R
Sbjct: 110 GDSVSYDQLVSRIKNVQIDKSSRFTDWSRRPLTDKQLEYAFADVTHLRDIYHYLKAELER 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|334143457|ref|YP_004536613.1| ribonuclease D [Thioalkalimicrobium cyclicum ALM1]
gi|333964368|gb|AEG31134.1| ribonuclease D [Thioalkalimicrobium cyclicum ALM1]
Length = 388
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA---RQGI 71
+ LV + + LNK + W +RPL P Q++YAA D + L Q Y + Q + RQ +
Sbjct: 120 ARLVEELCQEKLNKDQARTPWLDRPLNPEQLAYAAADVWFLAQAYPKIIRQLSPTQRQAL 179
Query: 72 E 72
E
Sbjct: 180 E 180
>gi|407800073|ref|ZP_11146941.1| ribonuclease D [Oceaniovalibus guishaninsula JLT2003]
gi|407058065|gb|EKE44033.1| ribonuclease D [Oceaniovalibus guishaninsula JLT2003]
Length = 389
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++K +F++W RPL +Q +YA D L +Y+ L + R
Sbjct: 116 GDQAGYETLVRKIARAQVDKTSRFTDWSRRPLSDAQKAYALADVTHLRGIYEYLAAELER 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|393244516|gb|EJD52028.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 471
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 4 DESQQGSPQSLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
D+ +LS LV K L K + S+WE R L QI YAA DAFC L++Y V
Sbjct: 238 DKGGHSGRTALSALVGKYLKHHLEKGPVRMSDWE-RYLTQDQIRYAANDAFCGLELYNVF 296
Query: 63 HDQCARQGIELGP 75
+ + L P
Sbjct: 297 LKMAKDKKVTLKP 309
>gi|329962096|ref|ZP_08300107.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
gi|328530744|gb|EGF57602.1| 3'-5' exonuclease [Bacteroides fluxus YIT 12057]
Length = 231
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L SQ YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYGILFGEKISKSQRLSNWEADVLSESQKLYAATDAWACLNIYNKLQE 190
>gi|170723061|ref|YP_001750749.1| ribonuclease D [Pseudomonas putida W619]
gi|169761064|gb|ACA74380.1| ribonuclease D [Pseudomonas putida W619]
Length = 377
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G S LV + G L K + S+W RPL +Q+SYAA DA L +++ L
Sbjct: 115 GFSMGYSRLVQEVLGLELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAELFAAL 168
>gi|186685790|ref|YP_001868986.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
gi|186468242|gb|ACC84043.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
Length = 306
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
C ++KQ+Q S+W RPL QI YA LD L Q++ L
Sbjct: 133 CSFNNIDKQEQTSDWGKRPLTEEQIEYAYLDCIYLAQIHSNL 174
>gi|333377065|ref|ZP_08468801.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM
22836]
gi|332886278|gb|EGK06522.1| hypothetical protein HMPREF9456_00396 [Dysgonomonas mossii DSM
22836]
Length = 197
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 22 FGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
F K ++K + SNWE L SQ YAALDA+ L++Y L ++
Sbjct: 146 FEKRISKGQRLSNWEVDVLSDSQKMYAALDAWACLRIYNELKNK 189
>gi|319641711|ref|ZP_07996394.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
gi|317386685|gb|EFV67581.1| hypothetical protein HMPREF9011_01992 [Bacteroides sp. 3_1_40A]
Length = 216
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ +SL + FG+ ++K + SNWE L Q YAA DA+ +++Y L
Sbjct: 138 ADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCL 190
>gi|393910372|gb|EFO27811.2| 3'-5' exonuclease [Loa loa]
Length = 844
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
S LV C TL+K+ Q ++W RPL + +YA D LL Y L + QG
Sbjct: 377 SYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQLRIKLLDQGDA 436
Query: 73 LGPLLTEVLSSHAVT 87
G LL V + A T
Sbjct: 437 AGNLLEYVYNESAQT 451
>gi|345519834|ref|ZP_08799245.1| hypothetical protein BSFG_02749 [Bacteroides sp. 4_3_47FAA]
gi|254836293|gb|EET16602.1| hypothetical protein BSFG_02749 [Bacteroides sp. 4_3_47FAA]
Length = 216
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+ +SL + FG+ ++K + SNWE L Q YAA DA+ +++Y L
Sbjct: 138 ADRSLQKIFANLFGQKISKSQRLSNWEADVLSEGQKLYAATDAWACVEIYNCL 190
>gi|148703462|gb|EDL35409.1| Werner syndrome homolog (human) [Mus musculus]
Length = 1385
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|126641731|ref|YP_001084715.1| ribonuclease D [Acinetobacter baumannii ATCC 17978]
Length = 318
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 67 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 117
>gi|336452077|ref|ZP_08622510.1| ribonuclease D [Idiomarina sp. A28L]
gi|336281124|gb|EGN74408.1| ribonuclease D [Idiomarina sp. A28L]
Length = 379
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ + LV + +++K ++W RPL P+Q+ YAA D L ++Y L +
Sbjct: 113 GTQIGYAGLVEQMLNVSVDKSQSRTDWLQRPLSPAQLEYAAADVEYLAELYPTLRAKTID 172
Query: 69 QGIE 72
G+E
Sbjct: 173 SGME 176
>gi|170763502|ref|NP_035851.3| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|170763504|ref|NP_001116294.1| Werner syndrome ATP-dependent helicase homolog [Mus musculus]
gi|342187359|sp|O09053.3|WRN_MOUSE RecName: Full=Werner syndrome ATP-dependent helicase homolog;
AltName: Full=Exonuclease WRN
gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
gi|29748014|gb|AAH50921.1| Wrn protein [Mus musculus]
gi|38173728|gb|AAH60700.1| Wrn protein [Mus musculus]
Length = 1401
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|218461991|ref|ZP_03502082.1| RNase D protein [Rhizobium etli Kim 5]
Length = 293
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + ++K +F++W RPL Q+ YA D L VY L Q R
Sbjct: 110 GDSVSYDQLVSRSKNVHIDKSSRFTDWSRRPLSDKQLEYALADVTHLRDVYLSLSSQLDR 169
Query: 69 QG 70
+G
Sbjct: 170 EG 171
>gi|113460879|ref|YP_718946.1| ribonuclease D [Haemophilus somnus 129PT]
gi|112822922|gb|ABI25011.1| ribonuclease D [Haemophilus somnus 129PT]
Length = 381
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 7 QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
Q G+ L+ L+ F ++K +NW RPL Q+ YAA D + LL +YQ + +
Sbjct: 122 QHGNSIGLAILLKHYFKLEIDKGISRTNWLARPLSDVQLHYAAADVWYLLPLYQRMQQKL 181
Query: 67 AR 68
A+
Sbjct: 182 AQ 183
>gi|418466011|ref|ZP_13036943.1| ribonuclease D [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755509|gb|EHK89673.1| ribonuclease D [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 385
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
+TLV F ++K ++W RPL +Q+ YAA D + LL +Y+ + Q A+ +
Sbjct: 128 GFATLVQHYFQIEIDKGASRTDWLARPLSDAQLQYAAADVWYLLPLYEQMQAQLAQTEWQ 187
Query: 73 LGPLLTE---VLSSHAVTTKKSTILYFS 97
+ E +L+ A TTK+ YF+
Sbjct: 188 -SAVENECEFLLNKRAQTTKEPDSAYFA 214
>gi|312066427|ref|XP_003136265.1| 3'-5' exonuclease [Loa loa]
Length = 845
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
S LV C TL+K+ Q ++W RPL + +YA D LL Y L + QG
Sbjct: 377 SYQHLVQTCCNHTLDKKFQKADWRLRPLTGAHKTYARSDTHYLLHCYDQLRIKLLDQGDA 436
Query: 73 LGPLLTEVLSSHAVT 87
G LL V + A T
Sbjct: 437 AGNLLEYVYNESAQT 451
>gi|7595900|gb|AAF64490.1|AF241636_1 WRN protein [Mus musculus]
Length = 1401
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|410635757|ref|ZP_11346365.1| ribonuclease D [Glaciecola lipolytica E3]
gi|410144840|dbj|GAC13570.1| ribonuclease D [Glaciecola lipolytica E3]
Length = 382
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
+G+ + L+ L+K + ++W RPL Q YAA D L QVY LH+Q
Sbjct: 112 KGATLGYAALIELMLDIKLDKGESRTDWIARPLSEQQCQYAANDVLYLFQVYPELHEQIE 171
Query: 68 RQG 70
G
Sbjct: 172 ALG 174
>gi|304383100|ref|ZP_07365575.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335786|gb|EFM02041.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 218
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L FG+ ++K++Q +NW+ L Q YAA DA+ +++Y+
Sbjct: 141 GLAKLYANIFGQRISKREQLTNWDADVLTEKQKRYAATDAWACIKLYE 188
>gi|167623763|ref|YP_001674057.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
gi|167353785|gb|ABZ76398.1| ribonuclease D [Shewanella halifaxensis HAW-EB4]
Length = 369
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ LV + +L+K + ++W RPL +Q++YAA D + L ++Y L D+ QG
Sbjct: 120 AKLVEQTLEVSLDKGESRTDWLKRPLTEAQLNYAANDVYYLYKLYPQLVDKLKEQG 175
>gi|117923642|ref|YP_864259.1| 3'-5' exonuclease [Magnetococcus marinus MC-1]
gi|117607398|gb|ABK42853.1| 3'-5' exonuclease [Magnetococcus marinus MC-1]
Length = 213
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 20 KCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+ G ++KQ Q S+W L P Q+ YAA D L+++ L + AR+G
Sbjct: 129 ELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREG 179
>gi|2130973|dbj|BAA20269.1| WRN typeI [Mus musculus]
gi|2130975|dbj|BAA20270.1| WRN typeII [Mus musculus]
Length = 1401
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|421788453|ref|ZP_16224752.1| putative ribonuclease D [Acinetobacter baumannii Naval-82]
gi|410402919|gb|EKP55023.1| putative ribonuclease D [Acinetobacter baumannii Naval-82]
Length = 374
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|354617195|ref|ZP_09034673.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
gi|353218454|gb|EHB83215.1| 3'-5' exonuclease, partial [Saccharomonospora paurometabolica YIM
90007]
Length = 282
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L TLV G L K ++W RPL ++YAALD L+ + L + A QG
Sbjct: 140 ALGTLVETLLGYRLEKGHSAADWSRRPLPAEWLNYAALDVELLVPLRGKLEAELAGQG 197
>gi|58582365|ref|YP_201381.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|58426959|gb|AAW75996.1| ribonuclease D [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 416
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LV + G L K + S+W RPL PSQ+ YAA D L + HD+ R+ E
Sbjct: 172 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAI----HDELTRRLTE 223
>gi|410666113|ref|YP_006918484.1| ribonuclease D [Simiduia agarivorans SA1 = DSM 21679]
gi|409028470|gb|AFV00755.1| ribonuclease D [Simiduia agarivorans SA1 = DSM 21679]
Length = 383
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G + LV G L+K + S+W RPL SQ+ YAALD LL VY
Sbjct: 118 GFSMGYANLVKDQLGIELDKGETRSDWMQRPLSQSQMHYAALDVAYLLVVY 168
>gi|444920067|ref|ZP_21239911.1| Ribonuclease D [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508934|gb|ELV09102.1| Ribonuclease D [Wohlfahrtiimonas chitiniclastica SH04]
Length = 285
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
L K + ++WE RPL SQI YA D L VY +L DQ
Sbjct: 132 LEKAETRTDWEKRPLSKSQIEYAYDDVTYLYDVYLLLRDQI 172
>gi|74142907|dbj|BAE42489.1| unnamed protein product [Mus musculus]
Length = 862
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|356538051|ref|XP_003537518.1| PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like
exonuclease-like [Glycine max]
Length = 210
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 13 SLSTLVLKCFGKTLNKQDQF--SNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
L++L K K L K ++ NWE L Q+ YAA DAF +YQV+ D
Sbjct: 137 GLASLTEKLLSKQLKKPNKIRLGNWETPVLSKEQLEYAATDAFASWYLYQVIKD 190
>gi|193077320|gb|ABO12113.2| ribonuclease D [Acinetobacter baumannii ATCC 17978]
Length = 374
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|363733349|ref|XP_001235033.2| PREDICTED: LOW QUALITY PROTEIN: Werner syndrome ATP-dependent
helicase homolog [Gallus gallus]
Length = 1498
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SL+ LV FGK L +K + NWE PL Q YAA DA+ +YQ L +
Sbjct: 186 SLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEEQKLYAATDAYAGFIIYQKLKTMNSIDR 245
Query: 71 IELGPLLTEVLS 82
G EVLS
Sbjct: 246 KLFGERRDEVLS 257
>gi|13472866|ref|NP_104433.1| hypothetical protein mll3296 [Mesorhizobium loti MAFF303099]
gi|14023613|dbj|BAB50219.1| mll3296 [Mesorhizobium loti MAFF303099]
Length = 206
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L + + G L+K Q S+W L P Q+ YAA D L ++ VL + AR+G
Sbjct: 116 HGLKDICFELLGVGLSKAQQSSDWAAETLSPEQLEYAASDVLYLHRLRDVLAGRLAREG 174
>gi|324501716|gb|ADY40761.1| Exosome component 10 [Ascaris suum]
Length = 892
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+ LV TL+K+ Q ++W RPL + I YA D LL Y L + +G E
Sbjct: 385 SLAHLVQSICNVTLDKELQKADWRVRPLTTAHIEYARSDTHYLLYCYDTLRQRLINEGNE 444
Query: 73 LGPLLTEVLSSHAV 86
LL + A+
Sbjct: 445 SNNLLRSTYNESAL 458
>gi|387152866|ref|YP_005701802.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1]
gi|311233310|gb|ADP86164.1| 3'-5' exonuclease [Desulfovibrio vulgaris RCH1]
Length = 201
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
L L G ++K Q SNW NR L P Q+ YAA DA+ +++
Sbjct: 144 GLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIH 190
>gi|421809182|ref|ZP_16245022.1| putative ribonuclease D [Acinetobacter baumannii OIFC035]
gi|410414966|gb|EKP66758.1| putative ribonuclease D [Acinetobacter baumannii OIFC035]
Length = 374
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|407700585|ref|YP_006825372.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
gi|407249732|gb|AFT78917.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
Length = 385
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+K + ++W RPLR +Q+SYAA D LL YQ L + G
Sbjct: 129 SLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAG 174
>gi|334704919|ref|ZP_08520785.1| ribonuclease D [Aeromonas caviae Ae398]
Length = 401
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G LV + G L K ++W RPL P Q+ YAA D F L+ +Y+
Sbjct: 141 HGVSVGFGALVNEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYE 193
>gi|406597337|ref|YP_006748467.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407684351|ref|YP_006799525.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407688279|ref|YP_006803452.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374658|gb|AFS37913.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407245962|gb|AFT75148.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407291659|gb|AFT95971.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 385
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+K + ++W RPLR +Q+SYAA D LL YQ L + G
Sbjct: 129 SLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAG 174
>gi|445406686|ref|ZP_21431963.1| putative ribonuclease D [Acinetobacter baumannii Naval-57]
gi|444781333|gb|ELX05252.1| putative ribonuclease D [Acinetobacter baumannii Naval-57]
Length = 374
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|326431455|gb|EGD77025.1| hypothetical protein PTSG_07367 [Salpingoeca sp. ATCC 50818]
Length = 848
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ SL+ L+ F +L+K+ Q S+W RPL YA D LL + L +
Sbjct: 366 GYPKYSLAYLLKHLFHLSLDKRHQLSDWRIRPLPADMCVYAQADTHYLLDAHDALKAELL 425
Query: 68 RQGIELGPLLTEVLS 82
+G E LL V +
Sbjct: 426 ERGNENANLLRSVFT 440
>gi|239501841|ref|ZP_04661151.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB900]
gi|332851689|ref|ZP_08433614.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
gi|332865936|ref|ZP_08436716.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
gi|417546725|ref|ZP_12197811.1| putative ribonuclease D [Acinetobacter baumannii OIFC032]
gi|417549133|ref|ZP_12200213.1| putative ribonuclease D [Acinetobacter baumannii Naval-18]
gi|417566224|ref|ZP_12217098.1| putative ribonuclease D [Acinetobacter baumannii OIFC143]
gi|421625533|ref|ZP_16066383.1| putative ribonuclease D [Acinetobacter baumannii OIFC098]
gi|421653411|ref|ZP_16093744.1| putative ribonuclease D [Acinetobacter baumannii Naval-72]
gi|421661832|ref|ZP_16102002.1| putative ribonuclease D [Acinetobacter baumannii OIFC110]
gi|421665163|ref|ZP_16105287.1| putative ribonuclease D [Acinetobacter baumannii OIFC087]
gi|421672296|ref|ZP_16112253.1| putative ribonuclease D [Acinetobacter baumannii OIFC099]
gi|421676402|ref|ZP_16116309.1| putative ribonuclease D [Acinetobacter baumannii OIFC065]
gi|421678496|ref|ZP_16118380.1| putative ribonuclease D [Acinetobacter baumannii OIFC111]
gi|421690993|ref|ZP_16130657.1| putative ribonuclease D [Acinetobacter baumannii IS-116]
gi|421696979|ref|ZP_16136558.1| putative ribonuclease D [Acinetobacter baumannii WC-692]
gi|424059971|ref|ZP_17797462.1| ribonuclease D [Acinetobacter baumannii Ab33333]
gi|445488715|ref|ZP_21458324.1| putative ribonuclease D [Acinetobacter baumannii AA-014]
gi|332729696|gb|EGJ61031.1| putative ribonuclease D [Acinetobacter baumannii 6013150]
gi|332734986|gb|EGJ66072.1| putative ribonuclease D [Acinetobacter baumannii 6013113]
gi|395557980|gb|EJG23981.1| putative ribonuclease D [Acinetobacter baumannii OIFC143]
gi|400384613|gb|EJP43291.1| putative ribonuclease D [Acinetobacter baumannii OIFC032]
gi|400387101|gb|EJP50174.1| putative ribonuclease D [Acinetobacter baumannii Naval-18]
gi|404560712|gb|EKA65954.1| putative ribonuclease D [Acinetobacter baumannii WC-692]
gi|404563144|gb|EKA68354.1| putative ribonuclease D [Acinetobacter baumannii IS-116]
gi|404667923|gb|EKB35832.1| ribonuclease D [Acinetobacter baumannii Ab33333]
gi|408512764|gb|EKK14402.1| putative ribonuclease D [Acinetobacter baumannii Naval-72]
gi|408698293|gb|EKL43787.1| putative ribonuclease D [Acinetobacter baumannii OIFC098]
gi|408715324|gb|EKL60452.1| putative ribonuclease D [Acinetobacter baumannii OIFC110]
gi|410379258|gb|EKP31862.1| putative ribonuclease D [Acinetobacter baumannii OIFC099]
gi|410379469|gb|EKP32072.1| putative ribonuclease D [Acinetobacter baumannii OIFC065]
gi|410390951|gb|EKP43330.1| putative ribonuclease D [Acinetobacter baumannii OIFC087]
gi|410392059|gb|EKP44421.1| putative ribonuclease D [Acinetobacter baumannii OIFC111]
gi|444767551|gb|ELW91798.1| putative ribonuclease D [Acinetobacter baumannii AA-014]
Length = 374
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|229844446|ref|ZP_04464586.1| ribonuclease D [Haemophilus influenzae 6P18H1]
gi|229812695|gb|EEP48384.1| ribonuclease D [Haemophilus influenzae 6P18H1]
Length = 399
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNIEIDKGATLTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
>gi|83951561|ref|ZP_00960293.1| ribonuclease D [Roseovarius nubinhibens ISM]
gi|83836567|gb|EAP75864.1| ribonuclease D [Roseovarius nubinhibens ISM]
Length = 385
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q YA D L ++Y+ L + +
Sbjct: 116 GEQVGYETLVRRIAKEQLDKSSRFTDWSRRPLSEAQKKYALGDVTHLRRIYEYLAAELEK 175
Query: 69 QGI------ELGPLL 77
G ELG L+
Sbjct: 176 SGRDAWVKEELGTLM 190
>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
Length = 377
Score = 38.9 bits (89), Expect = 0.42, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV L K + S+W RPL Q+ YAA D L++VY+ L + A
Sbjct: 115 GFSMGYSRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAP 174
Query: 69 QGIE 72
Q +E
Sbjct: 175 QKVE 178
>gi|224023974|ref|ZP_03642340.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
18228]
gi|224017196|gb|EEF75208.1| hypothetical protein BACCOPRO_00691 [Bacteroides coprophilus DSM
18228]
Length = 204
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL + FG+ ++K + SNWE L +Q YAA DA+ +++Y+ L +
Sbjct: 141 SLQKIYALLFGEKISKTQRLSNWEAETLTEAQQLYAATDAWACVRIYEYLEE 192
>gi|169796039|ref|YP_001713832.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
gi|213157227|ref|YP_002319272.1| ribonuclease D [Acinetobacter baumannii AB0057]
gi|215483497|ref|YP_002325714.1| ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
gi|301345593|ref|ZP_07226334.1| ribonuclease D [Acinetobacter baumannii AB056]
gi|301510304|ref|ZP_07235541.1| ribonuclease D [Acinetobacter baumannii AB058]
gi|301597268|ref|ZP_07242276.1| ribonuclease D [Acinetobacter baumannii AB059]
gi|417560237|ref|ZP_12211116.1| putative ribonuclease D [Acinetobacter baumannii OIFC137]
gi|417574364|ref|ZP_12225218.1| putative ribonuclease D [Acinetobacter baumannii Canada BC-5]
gi|421200508|ref|ZP_15657668.1| putative ribonuclease D [Acinetobacter baumannii OIFC109]
gi|421453812|ref|ZP_15903163.1| putative ribonuclease D [Acinetobacter baumannii IS-123]
gi|421631711|ref|ZP_16072375.1| putative ribonuclease D [Acinetobacter baumannii Naval-13]
gi|421644875|ref|ZP_16085349.1| putative ribonuclease D [Acinetobacter baumannii IS-235]
gi|421648700|ref|ZP_16089103.1| putative ribonuclease D [Acinetobacter baumannii IS-251]
gi|421657967|ref|ZP_16098213.1| putative ribonuclease D [Acinetobacter baumannii Naval-83]
gi|421699626|ref|ZP_16139150.1| putative ribonuclease D [Acinetobacter baumannii IS-58]
gi|421801372|ref|ZP_16237333.1| putative ribonuclease D [Acinetobacter baumannii Canada BC1]
gi|421802851|ref|ZP_16238795.1| putative ribonuclease D [Acinetobacter baumannii WC-A-694]
gi|169148966|emb|CAM86843.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AYE]
gi|213056387|gb|ACJ41289.1| ribonuclease D [Acinetobacter baumannii AB0057]
gi|213988267|gb|ACJ58566.1| Ribonuclease D(RNase D) [Acinetobacter baumannii AB307-0294]
gi|395522819|gb|EJG10908.1| putative ribonuclease D [Acinetobacter baumannii OIFC137]
gi|395564109|gb|EJG25761.1| putative ribonuclease D [Acinetobacter baumannii OIFC109]
gi|400209932|gb|EJO40902.1| putative ribonuclease D [Acinetobacter baumannii Canada BC-5]
gi|400213220|gb|EJO44175.1| putative ribonuclease D [Acinetobacter baumannii IS-123]
gi|404571327|gb|EKA76387.1| putative ribonuclease D [Acinetobacter baumannii IS-58]
gi|408503889|gb|EKK05641.1| putative ribonuclease D [Acinetobacter baumannii IS-235]
gi|408515534|gb|EKK17122.1| putative ribonuclease D [Acinetobacter baumannii IS-251]
gi|408710772|gb|EKL55995.1| putative ribonuclease D [Acinetobacter baumannii Naval-13]
gi|408711335|gb|EKL56544.1| putative ribonuclease D [Acinetobacter baumannii Naval-83]
gi|410405433|gb|EKP57470.1| putative ribonuclease D [Acinetobacter baumannii Canada BC1]
gi|410414149|gb|EKP65955.1| putative ribonuclease D [Acinetobacter baumannii WC-A-694]
Length = 374
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|46579495|ref|YP_010303.1| 3' exoribonuclease [Desulfovibrio vulgaris str. Hildenborough]
gi|120602955|ref|YP_967355.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
gi|46448909|gb|AAS95562.1| 3'- 5' exonuclease domain protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563184|gb|ABM28928.1| 3'-5' exonuclease [Desulfovibrio vulgaris DP4]
Length = 202
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
L L G ++K Q SNW NR L P Q+ YAA DA+ +++
Sbjct: 145 GLRNLAANFLGIRISKGAQCSNWSNRELGPQQVVYAATDAWVSREIH 191
>gi|387771659|ref|ZP_10127817.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
gi|386908519|gb|EIJ73212.1| ribonuclease D [Haemophilus parahaemolyticus HK385]
Length = 372
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ + LVL L+K ++W RPL +Q+ YAA D + LL +YQ + + A+
Sbjct: 117 GTSVGFAKLVLHYLDVELDKGASRTDWLVRPLSETQLQYAAADVWYLLPIYQKMQAELAQ 176
>gi|109899113|ref|YP_662368.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
gi|109701394|gb|ABG41314.1| ribonuclease D [Pseudoalteromonas atlantica T6c]
Length = 400
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
++K + ++W RPL P Q YAA D L Q+Y L D+ QG
Sbjct: 140 VDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQG 184
>gi|445441696|ref|ZP_21442175.1| putative ribonuclease D [Acinetobacter baumannii WC-A-92]
gi|444764664|gb|ELW88976.1| putative ribonuclease D [Acinetobacter baumannii WC-A-92]
Length = 374
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|410100003|ref|ZP_11294968.1| hypothetical protein HMPREF1076_04146 [Parabacteroides goldsteinii
CL02T12C30]
gi|409216558|gb|EKN09542.1| hypothetical protein HMPREF1076_04146 [Parabacteroides goldsteinii
CL02T12C30]
Length = 194
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
SL + F K ++K + SNWE L Q YAALDA+ L++Y L+
Sbjct: 141 SLQKIYAILFDKKISKGQRLSNWEADVLTEQQKKYAALDAWACLKIYNQLN 191
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
GS + L+ + + KQ+ S+W RPL +Q+ YAALD LL++Y+ L ++ +
Sbjct: 128 GSSIGYANLLREIKRIDIPKQETRSDWLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQ 187
Query: 69 Q 69
Q
Sbjct: 188 Q 188
>gi|255563614|ref|XP_002522809.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223538047|gb|EEF39660.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 149
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 9 GSPQSLS------TLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G P+S S LV K GK + + NWE L Q+ YAA DAF Q+YQVL
Sbjct: 71 GKPKSWSLQSLTEMLVCKELGKP--NKIRLGNWEVDVLSKEQLEYAATDAFASWQLYQVL 128
Query: 63 H 63
Sbjct: 129 R 129
>gi|421652815|ref|ZP_16093163.1| putative ribonuclease D [Acinetobacter baumannii OIFC0162]
gi|425748996|ref|ZP_18866978.1| putative ribonuclease D [Acinetobacter baumannii WC-348]
gi|445458699|ref|ZP_21447239.1| putative ribonuclease D [Acinetobacter baumannii OIFC047]
gi|408504232|gb|EKK05983.1| putative ribonuclease D [Acinetobacter baumannii OIFC0162]
gi|425489977|gb|EKU56278.1| putative ribonuclease D [Acinetobacter baumannii WC-348]
gi|444775108|gb|ELW99178.1| putative ribonuclease D [Acinetobacter baumannii OIFC047]
Length = 374
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|417553005|ref|ZP_12204075.1| putative ribonuclease D [Acinetobacter baumannii Naval-81]
gi|400393264|gb|EJP60310.1| putative ribonuclease D [Acinetobacter baumannii Naval-81]
Length = 374
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|399521199|ref|ZP_10761939.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110437|emb|CCH38498.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 373
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV L K + S+W RPL Q+ YAA D L++VY+ L + A
Sbjct: 115 GFSMGYSRLVQALLDIELPKGETRSDWLQRPLSELQVRYAAEDVLHLVEVYRALMARLAP 174
Query: 69 QGIE 72
Q +E
Sbjct: 175 QKVE 178
>gi|184158040|ref|YP_001846379.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
gi|332874500|ref|ZP_08442403.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
gi|384132139|ref|YP_005514751.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2]
gi|384143131|ref|YP_005525841.1| ribonuclease D, processes tRNA [Acinetobacter baumannii MDR-ZJ06]
gi|385237481|ref|YP_005798820.1| ribonuclease D, processes tRNA [Acinetobacter baumannii
TCDC-AB0715]
gi|387124004|ref|YP_006289886.1| ribonuclease D [Acinetobacter baumannii MDR-TJ]
gi|407932751|ref|YP_006848394.1| ribonuclease D [Acinetobacter baumannii TYTH-1]
gi|416145702|ref|ZP_11600654.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB210]
gi|417568252|ref|ZP_12219115.1| putative ribonuclease D [Acinetobacter baumannii OIFC189]
gi|417579339|ref|ZP_12230172.1| putative ribonuclease D [Acinetobacter baumannii Naval-17]
gi|417871385|ref|ZP_12516322.1| ribonuclease D [Acinetobacter baumannii ABNIH1]
gi|417873427|ref|ZP_12518298.1| ribonuclease D [Acinetobacter baumannii ABNIH2]
gi|417878382|ref|ZP_12522996.1| ribonuclease D [Acinetobacter baumannii ABNIH3]
gi|417882922|ref|ZP_12527192.1| ribonuclease D [Acinetobacter baumannii ABNIH4]
gi|421203176|ref|ZP_15660318.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AC12]
gi|421534085|ref|ZP_15980363.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AC30]
gi|421630269|ref|ZP_16070977.1| putative ribonuclease D [Acinetobacter baumannii OIFC180]
gi|421687990|ref|ZP_16127693.1| putative ribonuclease D [Acinetobacter baumannii IS-143]
gi|421703567|ref|ZP_16143029.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ZWS1122]
gi|421707290|ref|ZP_16146688.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ZWS1219]
gi|421794156|ref|ZP_16230261.1| putative ribonuclease D [Acinetobacter baumannii Naval-2]
gi|424052433|ref|ZP_17789965.1| ribonuclease D [Acinetobacter baumannii Ab11111]
gi|425754354|ref|ZP_18872217.1| putative ribonuclease D [Acinetobacter baumannii Naval-113]
gi|445469604|ref|ZP_21451261.1| putative ribonuclease D [Acinetobacter baumannii OIFC338]
gi|445480047|ref|ZP_21455368.1| putative ribonuclease D [Acinetobacter baumannii Naval-78]
gi|183209634|gb|ACC57032.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ACICU]
gi|322508359|gb|ADX03813.1| Ribonuclease D, processes tRNA [Acinetobacter baumannii 1656-2]
gi|323517981|gb|ADX92362.1| ribonuclease D, processes tRNA [Acinetobacter baumannii
TCDC-AB0715]
gi|332737344|gb|EGJ68268.1| putative ribonuclease D [Acinetobacter baumannii 6014059]
gi|333366768|gb|EGK48782.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AB210]
gi|342225462|gb|EGT90458.1| ribonuclease D [Acinetobacter baumannii ABNIH1]
gi|342231273|gb|EGT96084.1| ribonuclease D [Acinetobacter baumannii ABNIH2]
gi|342232928|gb|EGT97692.1| ribonuclease D [Acinetobacter baumannii ABNIH3]
gi|342236783|gb|EGU01291.1| ribonuclease D [Acinetobacter baumannii ABNIH4]
gi|347593624|gb|AEP06345.1| ribonuclease D, processes tRNA [Acinetobacter baumannii MDR-ZJ06]
gi|385878496|gb|AFI95591.1| ribonuclease D [Acinetobacter baumannii MDR-TJ]
gi|395554547|gb|EJG20549.1| putative ribonuclease D [Acinetobacter baumannii OIFC189]
gi|395568477|gb|EJG29151.1| putative ribonuclease D [Acinetobacter baumannii Naval-17]
gi|398327253|gb|EJN43389.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AC12]
gi|404561737|gb|EKA66962.1| putative ribonuclease D [Acinetobacter baumannii IS-143]
gi|404671883|gb|EKB39725.1| ribonuclease D [Acinetobacter baumannii Ab11111]
gi|407192058|gb|EKE63245.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ZWS1122]
gi|407192462|gb|EKE63641.1| ribonuclease D, processes tRNA [Acinetobacter baumannii ZWS1219]
gi|407901332|gb|AFU38163.1| ribonuclease D [Acinetobacter baumannii TYTH-1]
gi|408697942|gb|EKL43442.1| putative ribonuclease D [Acinetobacter baumannii OIFC180]
gi|409988072|gb|EKO44247.1| ribonuclease D, processes tRNA [Acinetobacter baumannii AC30]
gi|410395182|gb|EKP47495.1| putative ribonuclease D [Acinetobacter baumannii Naval-2]
gi|425497168|gb|EKU63280.1| putative ribonuclease D [Acinetobacter baumannii Naval-113]
gi|444772280|gb|ELW96399.1| putative ribonuclease D [Acinetobacter baumannii Naval-78]
gi|444774266|gb|ELW98354.1| putative ribonuclease D [Acinetobacter baumannii OIFC338]
Length = 374
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|114767452|ref|ZP_01446239.1| ribonuclease D [Pelagibaca bermudensis HTCC2601]
gi|114540462|gb|EAU43543.1| ribonuclease D [Roseovarius sp. HTCC2601]
Length = 385
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + + L+K +F++W RPL +Q YA D L +Y+ L + R
Sbjct: 116 GEQVGYETLVKRIAKQGLDKSSRFTDWSRRPLTDAQKKYALADVTHLRVIYEYLAAELER 175
Query: 69 QG 70
G
Sbjct: 176 TG 177
>gi|393762499|ref|ZP_10351126.1| ribonuclease D [Alishewanella agri BL06]
gi|392606734|gb|EIW89618.1| ribonuclease D [Alishewanella agri BL06]
Length = 377
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G + LV + G+ L+K + ++W RPL Q+ YAA D LL VYQ L
Sbjct: 111 GGSMGYARLVEQLTGEVLDKSESRTDWLARPLAQKQLDYAANDVKFLLPVYQRL 164
>gi|83593408|ref|YP_427160.1| ribonuclease D [Rhodospirillum rubrum ATCC 11170]
gi|386350145|ref|YP_006048393.1| ribonuclease D [Rhodospirillum rubrum F11]
gi|83576322|gb|ABC22873.1| Ribonuclease D [Rhodospirillum rubrum ATCC 11170]
gi|346718581|gb|AEO48596.1| ribonuclease D [Rhodospirillum rubrum F11]
Length = 386
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++K +F++W RPL Q+ YAA D L VY+ L + A
Sbjct: 112 GDSVGYETLVAKLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAA 171
Query: 69 QG 70
G
Sbjct: 172 NG 173
>gi|74227079|dbj|BAE38334.1| unnamed protein product [Mus musculus]
Length = 789
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|424921925|ref|ZP_18345286.1| ribonuclease D [Pseudomonas fluorescens R124]
gi|404303085|gb|EJZ57047.1| ribonuclease D [Pseudomonas fluorescens R124]
Length = 377
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV + G L K + S+W RPL +Q+SYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQVSYAAEDAVHLAEVF 165
>gi|375094980|ref|ZP_09741245.1| ribonuclease D [Saccharomonospora marina XMU15]
gi|374655713|gb|EHR50546.1| ribonuclease D [Saccharomonospora marina XMU15]
Length = 402
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L TLV G L K ++W RPL ++YAALD L+ + + L + A QG
Sbjct: 128 ALGTLVENLLGYKLEKGHSAADWSKRPLPTDWLNYAALDVELLVPLREKLEAELAAQG 185
>gi|374619794|ref|ZP_09692328.1| ribonuclease D [gamma proteobacterium HIMB55]
gi|374303021|gb|EHQ57205.1| ribonuclease D [gamma proteobacterium HIMB55]
Length = 366
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+V + G ++K++ S+W RPL Q++YAALD L + + LH Q +
Sbjct: 121 MVAQFVGVEISKEETTSDWLKRPLSAQQLNYAALDVTYLRSIGEKLHVQAEK 172
>gi|271967979|ref|YP_003342175.1| ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
gi|270511154|gb|ACZ89432.1| Ribonuclease D-like protein [Streptosporangium roseum DSM 43021]
Length = 408
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L +V G L K ++W RPL + YAALD L+++ VLH++ G
Sbjct: 131 LGMMVENVLGLKLEKGHSAADWSTRPLPEDWLRYAALDVEVLVELRDVLHEELKTSG 187
>gi|269126003|ref|YP_003299373.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
gi|268310961|gb|ACY97335.1| 3'-5' exonuclease [Thermomonospora curvata DSM 43183]
Length = 437
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L ++V G L K +W RPL + YAALD L+++ LH +
Sbjct: 154 GHPKVGLGSMVENVLGFVLEKGHSAVDWSTRPLPEDWLRYAALDVELLIELRDALHAELE 213
Query: 68 RQG 70
R G
Sbjct: 214 RAG 216
>gi|399004514|ref|ZP_10707136.1| ribonuclease D [Pseudomonas sp. GM18]
gi|398119286|gb|EJM08988.1| ribonuclease D [Pseudomonas sp. GM18]
Length = 377
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQDVLGIDLPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|419839681|ref|ZP_14363087.1| ribonuclease D [Haemophilus haemolyticus HK386]
gi|386909259|gb|EIJ73935.1| ribonuclease D [Haemophilus haemolyticus HK386]
Length = 380
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 121 GTSAGLAKLAHQYLNVEIDKGATRTNWIKRPLSDIQLKYAAGDVWYLLPLYHILEKELAK 180
Query: 69 QGIE 72
E
Sbjct: 181 TPWE 184
>gi|343426732|emb|CBQ70260.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 628
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 13 SLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
SL L G+ L K + S+WE PL QI YAA D F L+V + + + R G+
Sbjct: 303 SLRDLTRVYLGRRLRKDGVRVSDWERFPLDAHQIEYAASDTFASLEVLRAVSEYF-RSGM 361
Query: 72 ---ELGPLLTEVLSSHA 85
E G LL + +HA
Sbjct: 362 PDGEQGGLLERLDRAHA 378
>gi|342905159|ref|ZP_08726949.1| Ribonuclease D [Haemophilus haemolyticus M21621]
gi|341951719|gb|EGT78275.1| Ribonuclease D [Haemophilus haemolyticus M21621]
Length = 380
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 121 GTSAGLAKLAQQYLNIEIDKAATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 180
Query: 69 QGIE 72
E
Sbjct: 181 TPWE 184
>gi|294626013|ref|ZP_06704623.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599683|gb|EFF43810.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 363
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPL 76
LV + G L K + S+W RPL P+Q+ YAA D L + HD+ R+ E G L
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAI----HDELTRRLTEQGRL 174
>gi|169633537|ref|YP_001707273.1| ribonuclease D [Acinetobacter baumannii SDF]
gi|169152329|emb|CAP01251.1| ribonuclease D, processes tRNA [Acinetobacter baumannii]
Length = 374
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLFLMQLANHIKDQLKQKGL 173
>gi|3851581|gb|AAC72359.1| Wrn protein [Mus musculus]
Length = 988
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>gi|256372386|ref|YP_003110210.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
gi|256008970|gb|ACU54537.1| 3'-5' exonuclease [Acidimicrobium ferrooxidans DSM 10331]
Length = 396
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL L+ + G +++K ++ S+W RPL P Q++YAA D L + L ++ +G E
Sbjct: 131 SLGALLDRYLGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGRE 190
>gi|153807650|ref|ZP_01960318.1| hypothetical protein BACCAC_01932 [Bacteroides caccae ATCC 43185]
gi|423217361|ref|ZP_17203857.1| hypothetical protein HMPREF1061_00630 [Bacteroides caccae
CL03T12C61]
gi|149130012|gb|EDM21224.1| 3'-5' exonuclease [Bacteroides caccae ATCC 43185]
gi|392628520|gb|EIY22546.1| hypothetical protein HMPREF1061_00630 [Bacteroides caccae
CL03T12C61]
Length = 214
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQELKRTGNY 197
Query: 72 ELGPLLTEVLSSHAVTTKK 90
E+ P E H + + K
Sbjct: 198 EIAP--EEKKEEHLIESDK 214
>gi|398805427|ref|ZP_10564401.1| ribonuclease D [Polaromonas sp. CF318]
gi|398091601|gb|EJL82038.1| ribonuclease D [Polaromonas sp. CF318]
Length = 198
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G +++ + K F K+ K+ SNW N L +QI YAA DA+ L+VYQ L
Sbjct: 144 GVRGAVAVMFNKRFLKS--KKAATSNWANERLTEAQIVYAANDAYGALRVYQAL 195
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
Q SL L+ G T NK+ Q ++W +RPL I YA D LL +Y ++ +
Sbjct: 255 QMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQ 314
Query: 68 RQGIELGPLLTEV 80
++ LL EV
Sbjct: 315 KESTSDNDLLLEV 327
>gi|441500572|ref|ZP_20982729.1| 3'- 5' exonuclease domain protein [Fulvivirga imtechensis AK7]
gi|441435723|gb|ELR69110.1| 3'- 5' exonuclease domain protein [Fulvivirga imtechensis AK7]
Length = 196
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
L L G ++K Q SNWE+ L Q++YAA DA+ L++Y L
Sbjct: 138 GLRKLTAIILGFRISKSAQISNWESEMLTEKQVNYAATDAWVCLKMYNEL 187
>gi|260554178|ref|ZP_05826436.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
gi|424055668|ref|ZP_17793191.1| ribonuclease D [Acinetobacter nosocomialis Ab22222]
gi|425739619|ref|ZP_18857817.1| putative ribonuclease D [Acinetobacter baumannii WC-487]
gi|260404684|gb|EEW98196.1| ribonuclease D(RNase D) [Acinetobacter sp. RUH2624]
gi|407438863|gb|EKF45406.1| ribonuclease D [Acinetobacter nosocomialis Ab22222]
gi|425496250|gb|EKU62386.1| putative ribonuclease D [Acinetobacter baumannii WC-487]
Length = 374
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|224011024|ref|XP_002294469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969964|gb|EED88303.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 771
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 25 TLNKQDQFSNWENRPLRPSQISYAA 49
+L+K++Q SNW RPLRPSQ+ YA
Sbjct: 731 SLSKEEQCSNWNERPLRPSQLEYAG 755
>gi|118348280|ref|XP_001007615.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89289382|gb|EAR87370.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 964
Score = 38.5 bits (88), Expect = 0.46, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 1 MLTDESQQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
M+ QQ SL L G L+K Q S+W RPL ++YA +D+F LL+++
Sbjct: 863 MIIKNKQQS--YSLKNLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFP 920
Query: 61 VL 62
++
Sbjct: 921 IM 922
>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
Length = 398
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+K + ++W RPL Q+ YAA D F LL +Y+ L ++ + G
Sbjct: 155 LDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 199
>gi|160889123|ref|ZP_02070126.1| hypothetical protein BACUNI_01544 [Bacteroides uniformis ATCC 8492]
gi|270296116|ref|ZP_06202316.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|156861130|gb|EDO54561.1| 3'-5' exonuclease [Bacteroides uniformis ATCC 8492]
gi|270273520|gb|EFA19382.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 207
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNKLQE 190
>gi|423206709|ref|ZP_17193265.1| ribonuclease D [Aeromonas veronii AMC34]
gi|404622261|gb|EKB19126.1| ribonuclease D [Aeromonas veronii AMC34]
Length = 370
Score = 38.5 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G LV + G L K ++W RPL P Q+ YAA D F L+ +Y+
Sbjct: 111 GVSVGFGALVNEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYE 162
>gi|416892914|ref|ZP_11924238.1| Rnd protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347814612|gb|EGY31261.1| Rnd protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 394
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+TLV F ++K ++W RPL +Q+ YAA D + LL +YQ + Q A+
Sbjct: 137 GFATLVQHYFQIEIDKGASRTDWLARPLSDTQLQYAAADVWYLLPLYQQMQAQLAQ 192
>gi|384424967|ref|YP_005634325.1| Ribonuclease D [Vibrio cholerae LMA3984-4]
gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3984-4]
Length = 348
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 26 LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+K + ++W RPL Q+ YAA D F LL +Y+ L ++ + G
Sbjct: 105 LDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAG 149
>gi|289671331|ref|ZP_06492406.1| ribonuclease D, partial [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 293
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LV + G L K + S+W RPL PSQ+ YAA D L +HD+ R+ E
Sbjct: 49 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLF----AIHDELTRRLTE 100
>gi|377575254|ref|ZP_09804248.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
gi|377535831|dbj|GAB49413.1| ribonuclease D [Mobilicoccus pelagius NBRC 104925]
Length = 540
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L+ +V G +L K+ +W RPL + YAALD CL +V + + +
Sbjct: 262 GLPRVGLAAVVEHYLGFSLAKEHSAVDWSTRPLPEDWLIYAALDVECLAEVREAMIEDLT 321
Query: 68 RQG-IELGPLLTEVLSS---HAVTT 88
QG IE E L+S H V T
Sbjct: 322 AQGKIEWARQEFEALTSFTGHPVRT 346
>gi|417953178|ref|ZP_12596226.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817710|gb|EGU52587.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 389
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV G L+K + ++W RPL Q+ YAA D + L +Y+ L ++ +
Sbjct: 131 GLSTGFAALVENYLGVELDKSESRTDWLARPLSDKQLEYAAADVYYLQPLYEQLFEKITQ 190
Query: 69 QG 70
G
Sbjct: 191 AG 192
>gi|255693419|ref|ZP_05417094.1| 3'-5' exonuclease domain protein [Bacteroides finegoldii DSM 17565]
gi|423302015|ref|ZP_17280038.1| hypothetical protein HMPREF1057_03179 [Bacteroides finegoldii
CL09T03C10]
gi|260620806|gb|EEX43677.1| 3'-5' exonuclease [Bacteroides finegoldii DSM 17565]
gi|408471106|gb|EKJ89638.1| hypothetical protein HMPREF1057_03179 [Bacteroides finegoldii
CL09T03C10]
Length = 214
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
+SL + F + ++K + SNWE L Q YAA DA+ L +Y +L +
Sbjct: 138 KSLQKIYAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQELKQTGNY 197
Query: 72 ELGPLLTEVLSSHAVTTKK 90
E+ P E H + + K
Sbjct: 198 EIAP--EEKKEEHLIESDK 214
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ K FG L+K+ Q ++W RP + YA D L+++Y+ L + ++G
Sbjct: 127 LAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKG 183
>gi|340351101|ref|ZP_08674069.1| hypothetical protein HMPREF9419_2302 [Prevotella nigrescens ATCC
33563]
gi|339606719|gb|EGQ11686.1| hypothetical protein HMPREF9419_2302 [Prevotella nigrescens ATCC
33563]
Length = 227
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
SL L F + + K+ Q SNWE L Q YAA DA+ +Q+Y+ L +
Sbjct: 141 SLQKLYANLFHERITKRQQLSNWEAPILTEQQKIYAATDAWTCIQIYERLQE 192
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
SL+ L+ G NK+ Q ++W RP+ I YA D LL +Y L ++ +G
Sbjct: 388 SLAFLLRFYCGVDANKKFQLADWRIRPVPEEMIKYAREDTHYLLYIYDRLRNELVLKGKS 447
Query: 73 LGPLLTEVL------------------SSHAVTTKKSTILY 95
L EVL +SHA KK+ I Y
Sbjct: 448 TNNYLMEVLRRSKEICLIKYEKDILDENSHAEYLKKNGITY 488
>gi|445432349|ref|ZP_21439094.1| putative ribonuclease D [Acinetobacter baumannii OIFC021]
gi|444758645|gb|ELW83135.1| putative ribonuclease D [Acinetobacter baumannii OIFC021]
Length = 374
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 21 CFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
C + K S+W RPL P Q+ YAA D L+Q+ + DQ ++G+
Sbjct: 123 CLEIDIEKDQTRSDWLARPLSPQQLCYAANDVLYLMQLANHIKDQLKQKGL 173
>gi|388851398|emb|CCF54983.1| uncharacterized protein [Ustilago hordei]
Length = 620
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 13 SLSTLVLKCFGKTLNKQD-QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SL L GK L K + S+WE PL QI YAA D F L+V + + + +G
Sbjct: 309 SLRDLTRIYLGKKLKKDSVRVSDWERFPLEKGQIEYAASDTFASLEVLRAIAEYFRGEG 367
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 38.5 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L+ L+ K FG L+K+ Q ++W RP + YA D L+++Y+ L + ++G
Sbjct: 127 LAALLKKRFGVELDKRYQKADWSKRPFSQEMLDYAMKDTSLLIELYRQLEAELKQKG 183
>gi|409074989|gb|EKM75375.1| hypothetical protein AGABI1DRAFT_132275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1432
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 13 SLSTLVLKCFGKTLNKQDQF---SNWENRPLRPSQISYAALDAFCLLQVYQVL---HDQC 66
SLS L K L+K WEN L P QISYAA DAF L++Y L +D
Sbjct: 673 SLSDLCALILQKRLDKNTPLRTSETWENCVLTPEQISYAAKDAFVALKIYDELINHYDVP 732
Query: 67 ARQGIELGPLLTEVL 81
+ + PL+ VL
Sbjct: 733 SVLPPTVSPLMPVVL 747
>gi|423303634|ref|ZP_17281633.1| hypothetical protein HMPREF1072_00573 [Bacteroides uniformis
CL03T00C23]
gi|423307643|ref|ZP_17285633.1| hypothetical protein HMPREF1073_00383 [Bacteroides uniformis
CL03T12C37]
gi|392687998|gb|EIY81289.1| hypothetical protein HMPREF1072_00573 [Bacteroides uniformis
CL03T00C23]
gi|392689512|gb|EIY82789.1| hypothetical protein HMPREF1073_00383 [Bacteroides uniformis
CL03T12C37]
Length = 207
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNKLQE 190
>gi|282879856|ref|ZP_06288583.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1]
gi|281306250|gb|EFA98283.1| 3'-5' exonuclease [Prevotella timonensis CRIS 5C-B1]
Length = 215
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
SL L F + ++K+ + +NW N L Q YAA DA+ +Q+Y+
Sbjct: 140 SLQKLYANIFRQKISKRQRLTNWNNETLSEKQKQYAATDAWACIQLYE 187
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 8 QGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
Q SL L+ G T NK+ Q ++W +RPL I YA D LL +Y ++ +
Sbjct: 254 QMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQ 313
Query: 68 RQGIELGPLLTEV 80
++ LL EV
Sbjct: 314 KESTSDNDLLLEV 326
>gi|254439069|ref|ZP_05052563.1| ribonuclease D [Octadecabacter antarcticus 307]
gi|198254515|gb|EDY78829.1| ribonuclease D [Octadecabacter antarcticus 307]
Length = 395
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K ++K +F++W RPL +Q +YA D L +Y+ L + +
Sbjct: 126 GEQAGYETLVRKIAKDNVDKSSRFTDWSRRPLSDAQKTYALADVTHLRVIYEYLSAELDK 185
Query: 69 QG 70
G
Sbjct: 186 SG 187
>gi|408483085|ref|ZP_11189304.1| ribonuclease D [Pseudomonas sp. R81]
Length = 377
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S LV L K + S+W RPL +Q+SYAA DA L +VY L Q
Sbjct: 115 GFSMGYSRLVQAVLDIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAEVYTRLRPQ 171
>gi|285018846|ref|YP_003376557.1| ribonuclease D [Xanthomonas albilineans GPE PC73]
gi|283474064|emb|CBA16565.1| probable ribonuclease d protein [Xanthomonas albilineans GPE PC73]
Length = 361
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLH 63
LVL G L K + S+W RPL P+Q+ YAA D L ++ LH
Sbjct: 118 LVLDITGIHLTKGETRSDWLRRPLSPAQLEYAADDVRHLFALHDTLH 164
>gi|254776017|ref|ZP_05217533.1| ribonuclease D [Mycobacterium avium subsp. avium ATCC 25291]
Length = 416
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
+L+T+V + G L K ++W RPL ++YAALD L+++ + D A QG
Sbjct: 132 NLATMVERLLGFGLAKGHGAADWSKRPLPAEWLNYAALDVELLIELRAAIADVLAGQG 189
>gi|84687040|ref|ZP_01014923.1| ribonuclease D [Maritimibacter alkaliphilus HTCC2654]
gi|84665014|gb|EAQ11495.1| ribonuclease D [Rhodobacterales bacterium HTCC2654]
Length = 387
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV K L+K +F++W RPL +Q YA D L +Y+ L Q
Sbjct: 117 GDQAGYETLVRKIAKAQLDKSSRFTDWSRRPLTDAQKKYAIGDVTHLRVIYEFLKAQLEE 176
Query: 69 QG 70
G
Sbjct: 177 TG 178
>gi|346227088|ref|ZP_08848230.1| 3'-5' exonuclease [Anaerophaga thermohalophila DSM 12881]
gi|346227138|ref|ZP_08848280.1| 3'-5' exonuclease [Anaerophaga thermohalophila DSM 12881]
Length = 192
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
SL L G ++K+ + SNWE L QI YAA DA+ L++Y
Sbjct: 137 SLKDLAGLLLGIRISKRQRLSNWEADSLSEGQILYAATDAWVALKIY 183
>gi|317480691|ref|ZP_07939778.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36]
gi|316903198|gb|EFV25065.1| 3'-5' exonuclease [Bacteroides sp. 4_1_36]
Length = 207
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+SL + FG+ ++K + SNWE L Q YAA DA+ L +Y L +
Sbjct: 138 KSLQKIYAILFGEKISKSQRLSNWEAETLTEPQKLYAATDAWACLNIYNRLQE 190
>gi|423201652|ref|ZP_17188231.1| ribonuclease D [Aeromonas veronii AER39]
gi|404616684|gb|EKB13637.1| ribonuclease D [Aeromonas veronii AER39]
Length = 370
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G LV + G L K ++W RPL P Q+ YAA D F L+ +Y+
Sbjct: 111 GVSVGFGALVNEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYE 162
>gi|343501910|ref|ZP_08739777.1| ribonuclease D [Vibrio tubiashii ATCC 19109]
gi|418480461|ref|ZP_13049519.1| ribonuclease D [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342816339|gb|EGU51238.1| ribonuclease D [Vibrio tubiashii ATCC 19109]
gi|384571853|gb|EIF02381.1| ribonuclease D [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 397
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV G L+K + ++W RPL Q+ YAA D + L +Y+ L ++ +
Sbjct: 139 GLSTGFAALVESYLGVELDKSESRTDWLARPLTDKQLEYAAADVYYLQPLYEQLFEKITQ 198
Query: 69 QG 70
G
Sbjct: 199 AG 200
>gi|398854783|ref|ZP_10611319.1| ribonuclease D [Pseudomonas sp. GM80]
gi|398234335|gb|EJN20213.1| ribonuclease D [Pseudomonas sp. GM80]
Length = 377
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 59
G S LV G L K + S+W RPL +QISYAA DA L +V+
Sbjct: 115 GFSMGYSRLVQAVLGIELPKGETRSDWLQRPLSDTQISYAAEDAVHLAEVF 165
>gi|399073593|ref|ZP_10750582.1| ribonuclease D [Caulobacter sp. AP07]
gi|398041375|gb|EJL34440.1| ribonuclease D [Caulobacter sp. AP07]
Length = 389
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + L+K +F++W RPL +Q++YA D L ++ +L ++ +
Sbjct: 111 GEQIAYDALVRQMLKIELDKSSRFTDWARRPLSEAQLTYAVADVTHLATLFPILRERLEK 170
Query: 69 QG 70
G
Sbjct: 171 AG 172
>gi|290490726|dbj|BAI79323.1| WRN helicase [Gallus gallus]
Length = 1498
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
SL+ LV FGK L +K + NWE PL + YAA DA+ +YQ L + +
Sbjct: 186 SLNGLVKHLFGKQLLKDKSIRCGNWEKFPLDEERKLYAATDAYAGFIIYQKLKNMNSIDR 245
Query: 71 IELGPLLTEVLS 82
G EVLS
Sbjct: 246 KLFGERRDEVLS 257
>gi|406677169|ref|ZP_11084354.1| ribonuclease D [Aeromonas veronii AMC35]
gi|404625483|gb|EKB22300.1| ribonuclease D [Aeromonas veronii AMC35]
Length = 370
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G LV + G L K ++W RPL P Q+ YAA D F L+ +Y+
Sbjct: 111 GVSVGFGALVNEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYE 162
>gi|390165980|ref|ZP_10218253.1| ribonuclease D [Sphingobium indicum B90A]
gi|389591139|gb|EIM69114.1| ribonuclease D [Sphingobium indicum B90A]
Length = 401
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV G L+K +F++W RPL QI YA D L+Q++ + ++ R G
Sbjct: 137 LVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 190
>gi|342179225|sp|D4Z694.2|RND_SPHJU RecName: Full=Ribonuclease D; Short=RNase D
Length = 388
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV G L+K +F++W RPL QI YA D L+Q++ + ++ R G
Sbjct: 124 LVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 177
>gi|334345436|ref|YP_004553988.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
gi|334102058|gb|AEG49482.1| ribonuclease D [Sphingobium chlorophenolicum L-1]
Length = 388
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV G L+K +F++W RPL QI YA D L+Q++ + ++ R G
Sbjct: 124 LVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 177
>gi|294013278|ref|YP_003546738.1| ribonuclease D [Sphingobium japonicum UT26S]
gi|292676608|dbj|BAI98126.1| ribonuclease D [Sphingobium japonicum UT26S]
Length = 401
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV G L+K +F++W RPL QI YA D L+Q++ + ++ R G
Sbjct: 137 LVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 190
>gi|354565264|ref|ZP_08984439.1| cell division FtsK/SpoIIIE [Fischerella sp. JSC-11]
gi|353549223|gb|EHC18665.1| cell division FtsK/SpoIIIE [Fischerella sp. JSC-11]
Length = 849
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 14 LSTLVLKCFGKTL------NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+S L LK K L +K++Q S+W RPL Q++YAA+D L V++ L D
Sbjct: 120 VSNLQLKTLAKELCHFYNVDKEEQASDWGQRPLTQKQLNYAAMDTVYLAAVHRCLLD 176
>gi|336317481|ref|ZP_08572333.1| ribonuclease D [Rheinheimera sp. A13L]
gi|335878103|gb|EGM76050.1| ribonuclease D [Rheinheimera sp. A13L]
Length = 381
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G Q + LV + L+K + ++W RPL Q+ YAA D LL VYQ L
Sbjct: 113 GGSQGYAKLVQRVCAIELDKSESRTDWIARPLSALQLDYAAKDVEHLLDVYQAL 166
>gi|378696574|ref|YP_005178532.1| ribonuclease D [Haemophilus influenzae 10810]
gi|301169093|emb|CBW28690.1| ribonuclease D [Haemophilus influenzae 10810]
Length = 382
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 121 GTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 180
Query: 69 QGIE 72
E
Sbjct: 181 TPWE 184
>gi|294666468|ref|ZP_06731711.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603774|gb|EFF47182.1| ribonuclease D [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 363
Score = 38.5 bits (88), Expect = 0.51, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPL 76
LV + G L K + S+W RPL P+Q+ YAA D L + HD+ R+ E G L
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAI----HDELTRRLTEQGRL 174
>gi|145630436|ref|ZP_01786217.1| ribonuclease D [Haemophilus influenzae R3021]
gi|144984171|gb|EDJ91608.1| ribonuclease D [Haemophilus influenzae R3021]
Length = 273
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 14 GASAGLAKLAQQYLNIEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 73
Query: 69 QGIE 72
E
Sbjct: 74 TPWE 77
>gi|330829588|ref|YP_004392540.1| ribonuclease D [Aeromonas veronii B565]
gi|423209772|ref|ZP_17196326.1| ribonuclease D [Aeromonas veronii AER397]
gi|328804724|gb|AEB49923.1| Ribonuclease D [Aeromonas veronii B565]
gi|404617630|gb|EKB14566.1| ribonuclease D [Aeromonas veronii AER397]
Length = 370
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
G LV + G L K ++W RPL P Q+ YAA D F L+ +Y+
Sbjct: 111 GVSVGFGALVNEFLGVELEKDQARTDWLARPLTPRQLEYAAADVFYLMPLYE 162
>gi|85712692|ref|ZP_01043738.1| Ribonuclease D [Idiomarina baltica OS145]
gi|85693542|gb|EAQ31494.1| Ribonuclease D [Idiomarina baltica OS145]
Length = 367
Score = 38.5 bits (88), Expect = 0.52, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 9 GSPQSLSTLVLKCF-GKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
GS ++LV + F G TL+K ++W RPL Q++YAA D L +Y L +Q A
Sbjct: 104 GSSLGYASLVEQLFDGVTLDKSQSRTDWLKRPLSEEQLTYAAADVSYLNSMYPWLVEQVA 163
Query: 68 R 68
+
Sbjct: 164 Q 164
>gi|260580546|ref|ZP_05848374.1| ribonuclease D [Haemophilus influenzae RdAW]
gi|260092888|gb|EEW76823.1| ribonuclease D [Haemophilus influenzae RdAW]
Length = 399
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
Query: 69 QGIE 72
E
Sbjct: 200 TPWE 203
>gi|16272339|ref|NP_438552.1| ribonuclease D [Haemophilus influenzae Rd KW20]
gi|1173094|sp|P44442.1|RND_HAEIN RecName: Full=Ribonuclease D; Short=RNase D
gi|1573361|gb|AAC22048.1| ribonuclease D (rnd) [Haemophilus influenzae Rd KW20]
Length = 399
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
Query: 69 QGIE 72
E
Sbjct: 200 TPWE 203
>gi|392550649|ref|ZP_10297786.1| RNase D, processing tRNA s [Pseudoalteromonas spongiae
UST010723-006]
Length = 375
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA--RQGI 71
+ +V + ++K + +NW RPL +Q+ YAA D F L+ + ++ ++ +QGI
Sbjct: 118 FANMVEMLLEEQIDKSESRTNWLQRPLTKAQLDYAAADVFYLMPCFNIIKEKLNDDKQGI 177
Query: 72 ELG 74
G
Sbjct: 178 VFG 180
>gi|284031654|ref|YP_003381585.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
gi|283810947|gb|ADB32786.1| 3'-5' exonuclease [Kribbella flavida DSM 17836]
Length = 422
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 9 GSPQ-SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ L++LV + G + K+ ++W RPL + YAALD L+++ + +
Sbjct: 138 GYPKVGLASLVSEVLGYRMRKEHSAADWSTRPLPGPWLVYAALDVEMLIELRDAIEQELR 197
Query: 68 RQG 70
R+G
Sbjct: 198 REG 200
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,606,123,459
Number of Sequences: 23463169
Number of extensions: 52481668
Number of successful extensions: 101246
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 99384
Number of HSP's gapped (non-prelim): 2120
length of query: 114
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 33
effective length of database: 6,163,711,382
effective search space: 203402475606
effective search space used: 203402475606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)