BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12568
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71
Q+L+ LV C GK L+K +QFSNW RPLR Q+ YAALDAFCLL++Y + Q I
Sbjct: 574 QNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTH--I 631
Query: 72 ELGPLLTEVLSS 83
+L P E+L++
Sbjct: 632 QLDP--NEILNA 641
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster
GN=CG9247 PE=1 SV=1
Length = 625
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 13 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 597
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPAR 572
>sp|P34603|YO63_CAEEL Uncharacterized protein ZK1098.3 OS=Caenorhabditis elegans
GN=ZK1098.3 PE=4 SV=2
Length = 784
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 73
LS L G ++K +Q NW+ RPLR +QI YA +DA + +V+Q + + + ++
Sbjct: 567 LSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEVVRKHELDA 626
Query: 74 GPLLTEVLSSHAVTTKKSTI 93
LL E SH +T KK +
Sbjct: 627 EKLLVE---SHMITVKKEKV 643
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G LV G ++K +FS+W RPL +QI+YAA D L VYQ+L ++ R
Sbjct: 123 GDQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLER 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI YAA D L VY+ L D+ +
Sbjct: 123 GDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEK 182
Query: 69 QG 70
+G
Sbjct: 183 EG 184
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV G ++K +FS+W RPL +QI+YAA D L VY+ L + R
Sbjct: 121 GDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTR 180
Query: 69 QG 70
+G
Sbjct: 181 EG 182
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 14 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 60
L+ L G L+K +Q SNW+ RPLR QI YAALDA +++ ++
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFK 598
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELG 74
+ LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y L D+ Q LG
Sbjct: 139 AKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQD-RLG 197
Query: 75 PLLT--EVLSSHAVTTKKSTILYFSTVSGLDTKEHR 108
L E ++ + T Y + EH+
Sbjct: 198 WLYEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQ 233
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV +L+K +F++W RPL P+Q+ YA D L +Y +L D+
Sbjct: 112 GDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKE 171
Query: 69 QGIELGPLLTEV 80
G LG L E+
Sbjct: 172 TG-RLGWLSDEM 182
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
G TLV K G +++K +F++W RPL Q+ YA D L +Y+VL
Sbjct: 112 GDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL 165
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
G S +V +C G L+K +F++W RPL Q+ YA D L VY +L Q
Sbjct: 135 GDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQ 191
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G TLV + L+K +F++W RPL +Q YA D L ++Y+ L + AR
Sbjct: 117 GDQVGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELAR 176
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
LV G L+K +F++W RPL QI YA D L+Q++ + ++ R G
Sbjct: 124 LVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 177
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
Query: 69 QGIE 72
E
Sbjct: 200 TPWE 203
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72
LV + G L K + S+W RPL PSQ+ YAA D L + HD+ R+ E
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAI----HDELTRRLTE 170
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S +TLV G L+K + ++W RPL Q YAA D + LL + L +Q
Sbjct: 107 GHPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQV 166
Query: 67 ARQG 70
G
Sbjct: 167 REAG 170
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 31 QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64
+ NWE PL Q+ YAA DA+ +Y+VL D
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKD 280
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G + LV + G +K +F++W RPL Q+ YA D L V+ L +
Sbjct: 112 GDSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKK 171
Query: 69 QG 70
+G
Sbjct: 172 RG 173
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 13 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVY---QVLHDQCA 67
SL++LV GK L +K + SNW PL Q YAA DA+ +Y ++L D
Sbjct: 176 SLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILDDTVQ 235
Query: 68 RQGI 71
R I
Sbjct: 236 RFAI 239
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66
G P S +TLV + L+K + ++W RPL Q YAA D F LL + + L +
Sbjct: 111 GRPMSCGFATLVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQET 170
Query: 67 ARQG 70
G
Sbjct: 171 EEAG 174
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 58
G P S +++V + G TL+K + ++W RPL Q YAA D + LL +
Sbjct: 111 GRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 68
G S LV + L+K +F++W +RPL Q+ YA D L ++ +L +
Sbjct: 116 GEQVGYSNLVERYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRD 175
Query: 69 QG 70
+G
Sbjct: 176 KG 177
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 17 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
L L C G NKQ Q ++W RPL +SYA D LL +Y + + +G
Sbjct: 407 LRLYC-GVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 15 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62
S LV + L K + S+W RPL Q+ YAA D L QVY L
Sbjct: 124 SKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLAL 171
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC----A 67
SL+ +V G +++K Q S+W L +Q+ YAA D L +++ + D A
Sbjct: 107 HSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDA 166
Query: 68 RQGIEL 73
+G EL
Sbjct: 167 ERGEEL 172
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 9 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLL 56
G P S + LV TL+K + ++W RPL Q YAA D + LL
Sbjct: 111 GKPLSYGFAALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLL 160
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 27 NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
NKQ Q ++W RPL +SYA D LL +Y + + +G
Sbjct: 416 NKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 27 NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVL--SSH 84
+K+ Q ++W RPL + YA D LL ++ L ++ + E L + + SS
Sbjct: 346 DKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQSVFNSSK 405
Query: 85 AVTTKKSTILYFSTVSGLDTKEHRQL 110
++ +K + + + GL T R +
Sbjct: 406 QISLRKYELEPYDPIYGLGTDGWRNV 431
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 9 GSPQSLSTLVLKCFGK-TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67
G P+ +L+ F +K+ Q ++W RPL +YA D LL +Y DQ
Sbjct: 322 GLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIY----DQLR 377
Query: 68 RQGIELGPLLTEVLSSHAVTTKK 90
+ IE L + S V ++
Sbjct: 378 NKLIESNKLAGVLYESRNVAKRR 400
>sp|Q21HK3|SYI_SACD2 Isoleucine--tRNA ligase OS=Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024) GN=ileS PE=3 SV=1
Length = 932
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 49 ALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLSSHAVTTKKSTILYFSTVSGL 102
+ D + L Q+YQ LH+ C +E+G +++ TTK+++ S S L
Sbjct: 700 SYDTYQLHQIYQKLHNFCV---VEMGGFYLDIIKDRQYTTKETSHARRSAQSAL 750
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,949,652
Number of Sequences: 539616
Number of extensions: 1248641
Number of successful extensions: 2242
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2209
Number of HSP's gapped (non-prelim): 38
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)