Query psy12568
Match_columns 114
No_of_seqs 114 out of 1033
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:41:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 99.6 8.3E-17 2.8E-21 122.1 2.0 55 9-64 150-205 (206)
2 1yt3_A Ribonuclease D, RNAse D 99.5 8.5E-14 2.9E-18 112.1 9.7 101 9-110 113-215 (375)
3 2hbj_A Exosome complex exonucl 99.5 6.2E-14 2.1E-18 115.1 8.8 100 11-111 199-315 (410)
4 3saf_A Exosome component 10; e 99.4 2.9E-13 9.8E-18 112.4 9.6 62 11-72 222-283 (428)
5 2e6m_A Werner syndrome ATP-dep 99.4 9E-14 3.1E-18 102.8 4.7 62 9-70 136-199 (208)
6 3cym_A Uncharacterized protein 99.3 4E-12 1.4E-16 105.3 9.2 62 11-72 132-193 (440)
7 2kfn_A Klenow fragment of DNA 97.8 1.5E-05 5.2E-10 67.8 4.3 59 11-70 132-198 (605)
8 3pv8_A DNA polymerase I; DNA p 97.7 3.1E-05 1.1E-09 66.4 4.9 61 11-71 123-186 (592)
9 1x9m_A DNA polymerase; DNA plo 95.9 0.0014 4.7E-08 56.8 0.1 38 33-72 152-189 (698)
10 1wlj_A Interferon stimulated g 80.1 5.4 0.00018 28.2 6.4 48 10-70 126-173 (189)
11 3v9w_A Ribonuclease T; DEDD nu 76.7 2.2 7.6E-05 31.1 3.5 47 12-73 182-229 (235)
12 4dfk_A DNA polymerase I, therm 70.4 2.6 9E-05 35.5 2.9 39 11-68 92-131 (540)
13 2f96_A Ribonuclease T; RNAse, 59.9 9.8 0.00034 27.4 3.9 48 12-74 174-222 (224)
14 3ikm_A DNA polymerase subunit 57.9 12 0.00041 34.8 4.8 59 10-68 283-349 (1172)
15 2p1j_A POLIII, DNA polymerase 53.5 11 0.00037 26.4 3.2 44 10-70 137-180 (186)
16 1y97_A Three prime repair exon 53.4 19 0.00063 26.0 4.5 42 10-67 170-211 (238)
17 3mxm_B Three prime repair exon 52.4 17 0.00059 26.8 4.3 42 9-66 174-215 (242)
18 3u3y_B Three prime repair exon 44.0 34 0.0012 26.9 4.9 42 10-67 175-216 (314)
19 2py5_A DNA polymerase; protein 30.6 1.2E+02 0.0041 25.4 6.5 48 11-62 127-180 (575)
20 3kz3_A Repressor protein CI; f 27.2 97 0.0033 18.0 4.8 35 39-80 1-35 (80)
21 1noy_A Protein (DNA polymerase 23.8 48 0.0017 26.1 2.7 51 10-61 283-334 (388)
22 3hlx_A Pyrroloquinoline-quinon 20.8 1E+02 0.0035 23.4 3.9 37 34-70 32-69 (258)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.62 E-value=8.3e-17 Score=122.13 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHhCCcc-CCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q psy12568 9 GSPQSLSTLVLKCFGKTL-NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 64 (114)
Q Consensus 9 ~~~~sL~~Lv~~~lg~~l-dK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~ 64 (114)
..++||+.|++++||++| +|+.|+|||++ |||++||.|||.||++++.||++|.+
T Consensus 150 ~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 150 LEFLGTRELAHRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp GGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467999999999999999 44569999999 99999999999999999999999875
No 2
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.50 E-value=8.5e-14 Score=112.10 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC-h-hhhhHHHHhcccc
Q psy12568 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE-L-GPLLTEVLSSHAV 86 (114)
Q Consensus 9 ~~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~-~-~e~~~~~~~~~~~ 86 (114)
+...||+.|++++||+.++|+.++|||..|||+++|+.|||.||++++.||..|.+++++.|+. + .+-++...... .
T Consensus 113 ~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~-~ 191 (375)
T 1yt3_A 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRR-Q 191 (375)
T ss_dssp CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-H
T ss_pred CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhc-c
Confidence 4579999999999999999999999999999999999999999999999999999999999843 2 22233322211 2
Q ss_pred cccccccceecccccccchhhhhh
Q psy12568 87 TTKKSTILYFSTVSGLDTKEHRQL 110 (114)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
....|...|.+++..+.|+..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~l~~~~~~ 215 (375)
T 1yt3_A 192 EVVAPEDAWRDITNAWQLRTRQLA 215 (375)
T ss_dssp CCCCGGGGGGGSTTGGGSCHHHHH
T ss_pred cCCCchHHHHhccCcccCCHHHHH
Confidence 344577888899888888665543
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.49 E-value=6.2e-14 Score=115.12 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=79.2
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC---hhhhhHHHHhccc-c
Q psy12568 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE---LGPLLTEVLSSHA-V 86 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~---~~e~~~~~~~~~~-~ 86 (114)
..||+.|++++||+.++|+.++|||..|||+++|+.|||.||++++.||..|.++|.+.|+. .+| ++.+...+- .
T Consensus 199 ~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e-~~~l~~~~~~~ 277 (410)
T 2hbj_A 199 RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYE-SRNVAKRRFEY 277 (410)
T ss_dssp CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCEECC
T ss_pred ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHH-HHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999843 344 444332221 1
Q ss_pred --c-----------ccccccceecccccccchhhhhhh
Q psy12568 87 --T-----------TKKSTILYFSTVSGLDTKEHRQLC 111 (114)
Q Consensus 87 --~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
. ...|...|.+++..+.|+.+++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 315 (410)
T 2hbj_A 278 SKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVL 315 (410)
T ss_dssp GGGCCSSCCSSEECCCCSSSSSSSCSSCSCCCSTTHHH
T ss_pred ccccccccccccccCCchhHHHHHHhhhcCCCHHHHHH
Confidence 0 223456777888888887666543
No 4
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.45 E-value=2.9e-13 Score=112.36 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=59.8
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12568 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~ 72 (114)
..||+.|++++||++++|++++|||..|||+++|+.|||.||++++.||+.|..+|.+.|..
T Consensus 222 ~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~ 283 (428)
T 3saf_A 222 RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG 283 (428)
T ss_dssp CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 47999999999999999999999999999999999999999999999999999999999963
No 5
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.43 E-value=9e-14 Score=102.77 Aligned_cols=62 Identities=39% Similarity=0.462 Sum_probs=54.2
Q ss_pred CCCccHHHHHHHHhCCccCC--cccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q psy12568 9 GSPQSLSTLVLKCFGKTLNK--QDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70 (114)
Q Consensus 9 ~~~~sL~~Lv~~~lg~~ldK--~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~ 70 (114)
....||+.|++++||..+.| +.++|||+.|||+++|+.|||.||++++.||..|.+++++.|
T Consensus 136 ~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~ 199 (208)
T 2e6m_A 136 AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQ 199 (208)
T ss_dssp CCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred CCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 45789999999999999955 569999999999999999999999999999999999998877
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.33 E-value=4e-12 Score=105.28 Aligned_cols=62 Identities=29% Similarity=0.426 Sum_probs=59.8
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12568 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~ 72 (114)
..||+.|++.++|+.++|..++|||..|||+++|+.|||.||++++.||..|.++|.+.|..
T Consensus 132 ~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~ 193 (440)
T 3cym_A 132 RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKM 193 (440)
T ss_dssp SCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 79999999999999999999999999999999999999999999999999999999999844
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=97.79 E-value=1.5e-05 Score=67.81 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=51.8
Q ss_pred CccHHHHHHHHhCCcc-------CCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHH-cC
Q psy12568 11 PQSLSTLVLKCFGKTL-------NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR-QG 70 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~l-------dK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~-~~ 70 (114)
..||..|++.+||+.. .|+.+.++|..+|| ++|..||+.||.+++.||..|.+++.+ .|
T Consensus 132 ~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~ 198 (605)
T 2kfn_A 132 RHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKG 198 (605)
T ss_dssp CCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999875 46677789999998 789999999999999999999988866 44
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=97.70 E-value=3.1e-05 Score=66.45 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=54.9
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCC---CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q psy12568 11 PQSLSTLVLKCFGKTLNKQDQFSNWEN---RPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 71 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~q~SdW~~---RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~ 71 (114)
..||.+|+.+++|++++|.++.++|.+ .|.++.+..|||.||.+++.||..|.++|++.+.
T Consensus 123 ~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l 186 (592)
T 3pv8_A 123 VDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQ 186 (592)
T ss_dssp CCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 579999999999999999888888864 5677889999999999999999999999998763
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=95.90 E-value=0.0014 Score=56.80 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.7
Q ss_pred cCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12568 33 SNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 72 (114)
Q Consensus 33 SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~ 72 (114)
+||.. +++++..||+.||.+++.||..|.+++.+.++.
T Consensus 152 ~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~ 189 (698)
T 1x9m_A 152 MEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 189 (698)
T ss_dssp GGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTT
T ss_pred CCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 48975 679999999999999999999999999888763
No 10
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=80.06 E-value=5.4 Score=28.16 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=37.6
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q psy12568 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70 (114)
Q Consensus 10 ~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~ 70 (114)
.+.||..+++.++|+++.... +-.-|..||.....||..+.+++...+
T Consensus 126 ~~~~L~~l~~~~lgi~~~~~~-------------~~H~Al~Da~ata~l~~~l~~~~~~~~ 173 (189)
T 1wlj_A 126 RRVSLRVLSERLLHKSIQNSL-------------LGHSSVEDARATMELYQISQRIRARRG 173 (189)
T ss_dssp --CCHHHHHHHHTCCCCSCCT-------------TCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHcCCCCCCCC-------------CCcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999998999876531 123579999999999999999887766
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=76.73 E-value=2.2 Score=31.08 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-CCh
Q psy12568 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG-IEL 73 (114)
Q Consensus 12 ~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~-~~~ 73 (114)
.+|..+++.+ |++++ ..+-.+|..||.....||..|.+++.+.| |.+
T Consensus 182 ~~L~~l~~~~-gi~~~--------------~~~~H~Al~DA~~ta~l~~~l~~~l~~~~~~~l 229 (235)
T 3v9w_A 182 TVLSKACQTA-GMDFD--------------STQAHSALYDTERTAVLFCEIVNRWKRLGGWPL 229 (235)
T ss_dssp CSHHHHHHHH-TCCCC--------------TTTTTCHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCHHHHHHHc-CCCCC--------------CCCCcChHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4677777644 54432 22357899999999999999999999887 544
No 12
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=70.42 E-value=2.6 Score=35.52 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=33.0
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH-HH
Q psy12568 11 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC-AR 68 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l-~~ 68 (114)
+.||.+|+++++|. +.| +|+.||.+++.||..|.++| ++
T Consensus 92 ~~~L~~La~~yl~~-~gk------------------~a~~DA~~t~~L~~~L~~~L~~~ 131 (540)
T 4dfk_A 92 NTTPEGVARRYGGE-WTE------------------EAGERAALSERLFANLWGRLEGE 131 (540)
T ss_dssp CCCHHHHHHHHTSC-CCS------------------CHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHhhh-hcc------------------chHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999987 222 47899999999999999998 54
No 13
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=59.87 E-value=9.8 Score=27.39 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=33.2
Q ss_pred ccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-CChh
Q psy12568 12 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG-IELG 74 (114)
Q Consensus 12 ~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~-~~~~ 74 (114)
.+|..+++. +|++++. .+-.-|..||.....|+..+.+++.+.| |+..
T Consensus 174 ~~L~~l~~~-~gi~~~~--------------~~~H~Al~Da~~ta~l~~~l~~~~~~~~~~~~~ 222 (224)
T 2f96_A 174 TVLAKACQA-AGMEFDN--------------REAHSARYDTEKTAELFCGIVNRWKEMGGWMDD 222 (224)
T ss_dssp CSHHHHHHH-TTCCCCT--------------TSCCCHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred CCHHHHHHH-cCCCcCC--------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 456666654 4665431 2234589999999999999999998887 6543
No 14
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=57.89 E-value=12 Score=34.85 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCc--cHHHHHHHHhCC-ccCCccc--ccCCCCCCCC---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12568 10 SPQ--SLSTLVLKCFGK-TLNKQDQ--FSNWENRPLR---PSQISYAALDAFCLLQVYQVLHDQCAR 68 (114)
Q Consensus 10 ~~~--sL~~Lv~~~lg~-~ldK~~q--~SdW~~RPLs---~~Qi~YAA~Dv~~ll~l~~~l~~~l~~ 68 (114)
... ||+++.+-+||+ .+||+.+ +..-+...+- ++=+.|-|.||..-..||.++.-...+
T Consensus 283 S~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~e 349 (1172)
T 3ikm_A 283 SVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLE 349 (1172)
T ss_dssp CTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445 899999999998 9999873 3333332222 233899999999999999999887644
No 15
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=53.51 E-value=11 Score=26.42 Aligned_cols=44 Identities=25% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q psy12568 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70 (114)
Q Consensus 10 ~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~ 70 (114)
.+.+|..+++. +|++... -..|..||.....|+..+.++.++.|
T Consensus 137 ~~~~L~~l~~~-~gi~~~~----------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 137 RSYSLDSVVEK-LGLGPFR----------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp SCCSHHHHHHH-TTCCSTT----------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred CCCCHHHHHHH-cCCCCCC----------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677777764 5765431 35899999999999999887665554
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=53.38 E-value=19 Score=25.96 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=31.2
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12568 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67 (114)
Q Consensus 10 ~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~ 67 (114)
...+|..++++++|++.. .-.-|..||..+..|+..+.+++.
T Consensus 170 ~~~~L~~l~~~~~gi~~~----------------~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 170 QGYSLGSLFHRYFRAEPS----------------AAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp -CCSHHHHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHhCCCCc----------------cCccHHHHHHHHHHHHHHHHHHHH
Confidence 467888888877887643 247799999999999999887653
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=52.37 E-value=17 Score=26.83 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12568 9 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 66 (114)
Q Consensus 9 ~~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l 66 (114)
....+|..++++++|++.... .=|..||.....|+..+.+++
T Consensus 174 ~~~~~L~~l~~~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 174 RKSYSLGSIYTRLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp -CCCSHHHHHHHHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHH
T ss_pred CCCcCHHHHHHHHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHH
Confidence 356799999999999987543 237999999999998777654
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=43.98 E-value=34 Score=26.87 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12568 10 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 67 (114)
Q Consensus 10 ~~~sL~~Lv~~~lg~~ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~ 67 (114)
...+|..+++.++|++....+ =|..||..+..||..+.+++.
T Consensus 175 ~~~~L~~L~~~l~gi~~~~aH----------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 175 KSYSLGSIYTRLYWQAPTDSH----------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp CCCSHHHHHHHHHSSCCSCSS----------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred CCCCHHHHHHHhcCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998999865433 278999999999998887764
No 19
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=30.63 E-value=1.2e+02 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=34.8
Q ss_pred CccHHHHHHHHhCCccCCcc------cccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy12568 11 PQSLSTLVLKCFGKTLNKQD------QFSNWENRPLRPSQISYAALDAFCLLQVYQVL 62 (114)
Q Consensus 11 ~~sL~~Lv~~~lg~~ldK~~------q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~l 62 (114)
+.||+.+.+.+ |.+..|.. +.-+| -+.++-+.|...||..+..++...
T Consensus 127 ~~SL~~~a~~f-~~~~~K~~~py~~~~~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 127 PFPVKKIAKDF-KLTVLKGDIDYHKERPVGY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp CSCHHHHHHHT-TCCCCSSCCCTTSCCCTTC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHh-CCcccCCccCccccCcccc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57999988855 44433432 12234 488999999999999999998865
No 20
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.17 E-value=97 Score=17.99 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCChhhhhHHH
Q psy12568 39 PLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEV 80 (114)
Q Consensus 39 PLs~~Qi~YAA~Dv~~ll~l~~~l~~~l~~~~~~~~e~~~~~ 80 (114)
|||++++.-+ ..+...+....++.|+...++...+
T Consensus 1 ~lt~~~~~~~-------~~l~~~l~~~r~~~gltq~~lA~~~ 35 (80)
T 3kz3_A 1 SLTQEQLEDA-------RRLKAIWEKKKNELGLSYESVADKM 35 (80)
T ss_dssp CCCHHHHHHH-------HHHHHHHHHHHHHHTCCHHHHHHHT
T ss_pred CCCHHHHHHH-------HHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 7888888654 3456667777778888877766654
No 21
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=23.80 E-value=48 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=35.0
Q ss_pred CCccHHHHHHHHhCCc-cCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHH
Q psy12568 10 SPQSLSTLVLKCFGKT-LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 61 (114)
Q Consensus 10 ~~~sL~~Lv~~~lg~~-ldK~~q~SdW~~RPLs~~Qi~YAA~Dv~~ll~l~~~ 61 (114)
...||..+++.+||.. .+-....++|-. .=...-++|...||...+.|+.+
T Consensus 283 ~sysL~~Va~~~Lg~~K~d~~~~i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 283 PSFSLESVAQHETKKGKLPYDGPINKLRE-TNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp SCCSHHHHHHHHHSCCCCCCSSCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhCCCCCCcHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999974 222233333322 11134589999999999999987
No 22
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=20.78 E-value=1e+02 Score=23.36 Aligned_cols=37 Identities=14% Similarity=-0.033 Sum_probs=27.9
Q ss_pred CCCCCCCCHHHHH-HHHHhHHHHHHHHHHHHHHHHHcC
Q psy12568 34 NWENRPLRPSQIS-YAALDAFCLLQVYQVLHDQCARQG 70 (114)
Q Consensus 34 dW~~RPLs~~Qi~-YAA~Dv~~ll~l~~~l~~~l~~~~ 70 (114)
-|....|+.+|++ |+.+|-+|+..+-..+...+.+..
T Consensus 32 ~l~~G~L~~e~~r~yv~qdy~Yl~~f~r~~A~i~ak~~ 69 (258)
T 3hlx_A 32 AMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCP 69 (258)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 4555679999976 788999999877777766665543
Done!