RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12568
         (114 letters)



>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 206

 Score = 57.3 bits (138), Expect = 6e-12
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 10  SPQSLSTLVLKCFGKTLNKQDQF-SNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 65
                  L  +     L + D   + WE +     Q+  AA++ + ++ V+  L D+
Sbjct: 151 EFLGTRELAHRVLWSDLGQLDSIEAKWE-KAGPEEQLEAAAIEGWLIVNVWDQLSDE 206


>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 292

 Score = 54.8 bits (131), Expect = 8e-11
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 12  QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
            SL+ L+        +K+ Q ++W  RPL     + A  D   LL +Y  L ++     
Sbjct: 198 HSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESN 256


>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
           {Escherichia coli [TaxId: 562]}
          Length = 193

 Score = 40.7 bits (94), Expect = 8e-06
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 12  QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 70
              +++V +  G TL+K +  ++W  RPL   Q  YAA D + LL +   L  +    G
Sbjct: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174


>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA
           polymerase {Escherichia coli [TaxId: 562]}
          Length = 195

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 7   QQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQIS------YAALDAFCLLQVYQ 60
                  + +L  +         ++ +      L  +QI+      YAA DA   LQ++ 
Sbjct: 128 SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHL 187

Query: 61  VLHDQ 65
            +   
Sbjct: 188 KMWPD 192


>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein,
           ISG20 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 173

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 47  YAALDAFCLLQVYQVLHDQCARQGIE 72
            +  DA   +++YQ+     AR+G+ 
Sbjct: 145 SSVEDARATMELYQISQRIRARRGLP 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,609
Number of extensions: 12359
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)