BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12569
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 73
Q+L+ LV C GK L+K +QFSNW RPLR Q+ YAALDAFCLL++Y + Q I
Sbjct: 574 QNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQLTH--I 631
Query: 74 ELGPLLTEVLSS 85
+L P E+L++
Sbjct: 632 QLDP--NEILNA 641
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster
GN=CG9247 PE=1 SV=1
Length = 625
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 15 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 597
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPAR 572
>sp|P34603|YO63_CAEEL Uncharacterized protein ZK1098.3 OS=Caenorhabditis elegans
GN=ZK1098.3 PE=4 SV=2
Length = 784
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 75
LS L G ++K +Q NW+ RPLR +QI YA +DA + +V+Q + + + ++
Sbjct: 567 LSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEVVRKHELDA 626
Query: 76 GPLLTEVLSSHAVTTKK 92
LL E SH +T KK
Sbjct: 627 EKLLVE---SHMITVKK 640
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
++A + G LV G ++K +FS+W RPL +QI+YAA D L VY
Sbjct: 114 QVAAMVAGFGDQVGYDNLVASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVY 173
Query: 62 QVLHDQCARQG 72
Q+L ++ R+G
Sbjct: 174 QLLLERLEREG 184
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
++A + G TLV G ++K +FS+W RPL +QI YAA D L VY
Sbjct: 114 QVAAMVAGFGDQVGYDTLVSSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVY 173
Query: 62 QVLHDQCARQG 72
+ L D+ ++G
Sbjct: 174 ETLRDRLEKEG 184
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
+IA G + LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y
Sbjct: 124 QIAASLCGMGHGLGYAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLY 183
Query: 62 QVLHDQCARQGIELGPLLTE 81
L D+ Q LG L E
Sbjct: 184 PQLADKLKAQD-RLGWLYEE 202
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 62
L+ L G L+K +Q SNW+ RPLR QI YAALDA +++ ++
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFK 598
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
++A + G TLV G ++K +FS+W RPL +QI+YAA D L VY
Sbjct: 112 QVAAMVAGFGDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVY 171
Query: 62 QVLHDQCARQG 72
+ L + R+G
Sbjct: 172 EGLRARLTREG 182
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
G S LV +L+K +F++W RPL P+Q+ YA D L +Y +L D+
Sbjct: 112 GDQVSYGDLVQTVCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKE 171
Query: 71 QGIELGPLLTEV 82
G LG L E+
Sbjct: 172 TG-RLGWLSDEM 182
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
G TLV K G +++K +F++W RPL Q+ YA D L +Y+VL
Sbjct: 112 GDSVGYETLVRKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVL 165
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
+IA G S +V +C G L+K +F++W RPL Q+ YA D L VY
Sbjct: 126 QIAGSICGFGDSISYDQIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVY 185
Query: 62 QVLHDQ 67
+L Q
Sbjct: 186 LLLKKQ 191
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
+IA A G LV G L+K +F++W RPL QI YA D L+Q++
Sbjct: 107 QIAAMALGLGEQIGYGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIF 166
Query: 62 QVLHDQCARQG 72
+ ++ R G
Sbjct: 167 PKMLEELRRTG 177
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
G TLV + L+K +F++W RPL +Q YA D L ++Y+ L + AR
Sbjct: 117 GDQVGYETLVRRIAKANLDKSSRFTDWSRRPLSDAQKVYALADVTYLREIYEYLSAELAR 176
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 19 LVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74
LV + G L K + S+W RPL PSQ+ YAA D L + HD+ R+ E
Sbjct: 119 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAI----HDELTRRLTE 170
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 15 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
SL+ LV GK L +K + SNW N PL Q YAA DA+ L +YQ L
Sbjct: 170 SLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 7 ASTQGSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
AS G P S +TLV G L+K + ++W RPL Q YAA D + LL + L
Sbjct: 103 ASFVGHPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKL 162
Query: 65 HDQCARQG 72
+Q G
Sbjct: 163 MEQVREAG 170
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
G+ L+ L + ++K +NW RPL Q+ YAA D + LL +Y +L + A+
Sbjct: 140 GTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAK 199
Query: 71 QGIE 74
E
Sbjct: 200 TPWE 203
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 33 QFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 66
+ NWE PL Q+ YAA DA+ +Y+VL D
Sbjct: 247 RLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKD 280
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 15 SLSTLVLKCFGKTL--NKQDQFSNWENRPLRPSQISYAALDAFCLLQVY---QVLHDQCA 69
SL++LV GK L +K + SNW PL Q YAA DA+ +Y ++L D
Sbjct: 176 SLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNLEILDDTVQ 235
Query: 70 RQGI 73
R I
Sbjct: 236 RFAI 239
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
G + LV + G +K +F++W RPL Q+ YA D L V+ L +
Sbjct: 112 GDSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKK 171
Query: 71 QG 72
+G
Sbjct: 172 RG 173
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 7 ASTQGSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
A+ G P S +TLV + L+K + ++W RPL Q YAA D F LL + + L
Sbjct: 107 AAFTGRPMSCGFATLVAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRL 166
Query: 65 HDQCARQG 72
+ G
Sbjct: 167 VQETEEAG 174
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
+IA A G S LV + L+K +F++W +RPL Q+ YA D L ++
Sbjct: 107 QIAAMALGVGEQVGYSNLVERYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLF 166
Query: 62 QVLHDQCARQG 72
+L + +G
Sbjct: 167 PMLLKELRDKG 177
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 11 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV 60
G P S +++V + G TL+K + ++W RPL Q YAA D + LL +
Sbjct: 111 GRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 72
SL L+ G NKQ Q ++W RPL +SYA D LL +Y + + +G
Sbjct: 401 HSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERG 459
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 29 NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG 72
NKQ Q ++W RPL +SYA D LL +Y + + +G
Sbjct: 416 NKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERG 459
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC----A 69
SL+ +V G +++K Q S+W L +Q+ YAA D L +++ + D A
Sbjct: 107 HSLNHIVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDA 166
Query: 70 RQGIEL 75
+G EL
Sbjct: 167 ERGEEL 172
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 17 STLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
S LV + L K + S+W RPL Q+ YAA D L QVY L
Sbjct: 124 SKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLAL 171
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 11 GSPQS--LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLL 58
G P S + LV TL+K + ++W RPL Q YAA D + LL
Sbjct: 111 GKPLSYGFAALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLL 160
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCL 57
R+A G + S SL LV + L+K + +NW RPL Q+SY+ D L
Sbjct: 106 RLAAGFAGSISTISLLQLVSEQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYL 161
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 11 GSPQSLSTLVLKCFGK-TLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 69
G P+ +L+ F +K+ Q ++W RPL +YA D LL +Y DQ
Sbjct: 322 GLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIY----DQLR 377
Query: 70 RQGIELGPLLTEVLSSHAVTTKK 92
+ IE L + S V ++
Sbjct: 378 NKLIESNKLAGVLYESRNVAKRR 400
>sp|Q21HK3|SYI_SACD2 Isoleucine--tRNA ligase OS=Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024) GN=ileS PE=3 SV=1
Length = 932
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 51 ALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLSSHAVTTKKST 94
+ D + L Q+YQ LH+ C +E+G +++ TTK+++
Sbjct: 700 SYDTYQLHQIYQKLHNFCV---VEMGGFYLDIIKDRQYTTKETS 740
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 35 SNWENRPLRPSQISYAALDAFCLLQVYQVLH 65
SNW N L Q+ YA D++ L +Y L
Sbjct: 263 SNWNNPVLTSDQVKYAITDSYLSLMIYNELQ 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,230,575
Number of Sequences: 539616
Number of extensions: 964648
Number of successful extensions: 1731
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 37
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)