Query psy12569
Match_columns 94
No_of_seqs 126 out of 1025
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:42:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 99.8 1.7E-19 5.7E-24 130.3 2.5 63 3-66 140-205 (206)
2 3saf_A Exosome component 10; e 99.6 5.5E-16 1.9E-20 122.1 9.7 72 2-74 212-283 (428)
3 2e6m_A Werner syndrome ATP-dep 99.6 3.9E-16 1.3E-20 110.2 5.2 72 2-73 127-200 (208)
4 1yt3_A Ribonuclease D, RNAse D 99.6 3.5E-15 1.2E-19 114.3 8.7 73 2-74 104-176 (375)
5 2hbj_A Exosome complex exonucl 99.6 3.6E-15 1.2E-19 116.4 8.3 72 2-74 189-260 (410)
6 3cym_A Uncharacterized protein 99.5 4.2E-14 1.4E-18 111.3 8.0 79 2-81 122-203 (440)
7 2kfn_A Klenow fragment of DNA 98.3 5.4E-07 1.9E-11 72.9 4.9 70 2-72 120-198 (605)
8 3pv8_A DNA polymerase I; DNA p 98.3 4.9E-07 1.7E-11 73.6 4.5 73 2-74 111-187 (592)
9 1x9m_A DNA polymerase; DNA plo 97.2 5.3E-05 1.8E-09 62.3 0.0 71 2-74 92-189 (698)
10 4dfk_A DNA polymerase I, therm 93.5 0.05 1.7E-06 43.7 3.3 50 2-71 82-132 (540)
11 1wlj_A Interferon stimulated g 83.0 4.1 0.00014 27.4 6.4 50 12-74 126-175 (189)
12 3v9w_A Ribonuclease T; DEDD nu 76.9 2.4 8.3E-05 29.4 3.6 45 14-73 182-226 (235)
13 1y97_A Three prime repair exon 70.2 5.1 0.00017 27.6 3.9 41 13-69 171-211 (238)
14 2p1j_A POLIII, DNA polymerase 68.3 4.1 0.00014 27.2 3.0 42 13-71 138-179 (186)
15 3ikm_A DNA polymerase subunit 67.3 7.4 0.00025 34.3 5.0 60 11-70 282-349 (1172)
16 3kz3_A Repressor protein CI; f 62.2 18 0.00061 20.4 4.7 38 41-85 1-38 (80)
17 2f96_A Ribonuclease T; RNAse, 60.1 11 0.00036 25.9 3.9 47 14-75 174-221 (224)
18 3mxm_B Three prime repair exon 57.4 14 0.00047 26.0 4.2 41 12-68 175-215 (242)
19 3u3y_B Three prime repair exon 53.9 21 0.00071 26.7 4.9 42 12-69 175-216 (314)
20 1bgx_T TAQ DNA polymerase; DNA 45.1 30 0.001 29.1 5.0 48 2-69 374-421 (832)
21 2py5_A DNA polymerase; protein 41.3 72 0.0025 25.4 6.5 48 13-64 127-180 (575)
22 1noy_A Protein (DNA polymerase 39.5 19 0.00065 27.1 2.7 51 13-64 284-335 (388)
23 3hlx_A Pyrroloquinoline-quinon 39.0 51 0.0017 23.8 4.9 36 36-71 32-68 (258)
24 1qht_A Protein (DNA polymerase 33.0 49 0.0017 27.3 4.4 54 13-66 272-328 (775)
25 3lqv_P Splicing factor 3B subu 28.1 33 0.0011 18.3 1.7 11 38-48 19-29 (39)
26 4db1_A Myosin-7; S1DC, cardiac 25.3 2.9E+02 0.0098 23.1 7.7 37 33-70 406-445 (783)
27 2vwa_A Putative uncharacterize 21.4 96 0.0033 19.5 3.2 27 41-67 41-67 (101)
28 3ro2_B Peptide of nuclear mito 20.4 45 0.0015 16.3 1.2 17 23-39 5-21 (28)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.75 E-value=1.7e-19 Score=130.26 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=57.7
Q ss_pred hchhhcCC--CCCccHHHHHHHHhCCcc-CCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q psy12569 3 IATGASTQ--GSPQSLSTLVLKCFGKTL-NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHD 66 (94)
Q Consensus 3 iAa~~lg~--~~~~sL~~lv~~~lg~~l-dK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~ 66 (94)
+|+.++|. ..++||+.||+++||+++ +|+.|+|||++ |||++|+.|||.||++++.||++|.+
T Consensus 140 la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 140 LAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78889997 458999999999999999 45669999999 99999999999999999999999875
No 2
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.65 E-value=5.5e-16 Score=122.12 Aligned_cols=72 Identities=29% Similarity=0.374 Sum_probs=68.9
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~ 74 (94)
++|+.++|.+ +.||+.|++++||+.++|+.++|||..||||++|+.|||.||++++.||+.|..+|.+.|..
T Consensus 212 ~lAa~lL~~~-~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~ 283 (428)
T 3saf_A 212 HQAARLLNLG-RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG 283 (428)
T ss_dssp HHHHHHTTCS-CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHhCCC-CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6899999987 58999999999999999999999999999999999999999999999999999999999874
No 3
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.61 E-value=3.9e-16 Score=110.18 Aligned_cols=72 Identities=35% Similarity=0.413 Sum_probs=62.0
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCC--cccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNK--QDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 73 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK--~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~ 73 (94)
++|+.+++...+.||+.|++++||..+.| +.++|||+.|||+++|+.|||.||++++.||..|.++|.+.|+
T Consensus 127 ~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~ 200 (208)
T 2e6m_A 127 DVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQV 200 (208)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 67888888766899999999999999955 5699999999999999999999999999999999999987763
No 4
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.59 E-value=3.5e-15 Score=114.34 Aligned_cols=73 Identities=26% Similarity=0.377 Sum_probs=69.5
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~ 74 (94)
++|+.++|.+.+.||+.|++++||+.++|+.++|||..|||+++|+.|||.||++++.||..|.++|.+.|+.
T Consensus 104 ~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~ 176 (375)
T 1yt3_A 104 QILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 (375)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 6899999997789999999999999999999999999999999999999999999999999999999998853
No 5
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.58 E-value=3.6e-15 Score=116.36 Aligned_cols=72 Identities=24% Similarity=0.276 Sum_probs=68.8
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~ 74 (94)
++|+.++|.+ +.||+.|++++||+.++|+.++|||..|||+++|+.|||.||++++.||..|.++|.+.|+.
T Consensus 189 ~lAa~LL~~~-~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~ 260 (410)
T 2hbj_A 189 YHASKAIGLP-RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKL 260 (410)
T ss_dssp HHHHHHHTCS-CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCC-ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 6899999987 79999999999999999999999999999999999999999999999999999999999864
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.50 E-value=4.2e-14 Score=111.25 Aligned_cols=79 Identities=25% Similarity=0.304 Sum_probs=72.1
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC---chhh
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE---LGPL 78 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~---~~e~ 78 (94)
++|+.+||.+ +.||+.|++.+||..++|+.++|||..|||+++|+.|||.||++++.||+.|.++|.+.|+. .+|+
T Consensus 122 ~lAa~lL~~~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~ 200 (440)
T 3cym_A 122 EIAARLLGLK-RFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEF 200 (440)
T ss_dssp HHHHHHTTCS-SCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6899999986 89999999999999999999999999999999999999999999999999999999998854 4555
Q ss_pred HHH
Q psy12569 79 LTE 81 (94)
Q Consensus 79 ~~~ 81 (94)
..+
T Consensus 201 ~~l 203 (440)
T 3cym_A 201 DYA 203 (440)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.30 E-value=5.4e-07 Score=72.89 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=59.5
Q ss_pred hhchhhcCCC-CCccHHHHHHHHhCCcc-------CCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHH-cC
Q psy12569 2 RIATGASTQG-SPQSLSTLVLKCFGKTL-------NKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR-QG 72 (94)
Q Consensus 2 qiAa~~lg~~-~~~sL~~lv~~~lg~~l-------dK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~-~~ 72 (94)
.+|+.+++.+ .+.||..|++++||... .|+.+.++|..+|| ++|..||+.||.++..||..|.++|.+ .|
T Consensus 120 ~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~ 198 (605)
T 2kfn_A 120 MLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKG 198 (605)
T ss_dssp HHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888764 36999999999999875 46677789999998 789999999999999999999998876 44
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.30 E-value=4.9e-07 Score=73.59 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=64.1
Q ss_pred hhchhhcCCCC-CccHHHHHHHHhCCccCCcccccCCCC---CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12569 2 RIATGASTQGS-PQSLSTLVLKCFGKTLNKQDQFSNWEN---RPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 2 qiAa~~lg~~~-~~sL~~lv~~~lg~~ldK~~q~SdW~~---rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~ 74 (94)
++|+-+++.+. +.||..|++++||..+++.++.++|.+ .|.++.|.+||+.||.+++.|+..|..+|.+.++.
T Consensus 111 mLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~ 187 (592)
T 3pv8_A 111 LLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQD 187 (592)
T ss_dssp HHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 57888888654 699999999999999999888888865 56678899999999999999999999999997753
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=97.20 E-value=5.3e-05 Score=62.32 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=55.8
Q ss_pred hhchhhcCCCC-CccHHHHHHHHh-------CCcc-----C-----------Ccc--cc-cCCCCCCCCHHHHHHHHHhH
Q psy12569 2 RIATGASTQGS-PQSLSTLVLKCF-------GKTL-----N-----------KQD--QF-SNWENRPLRPSQISYAALDA 54 (94)
Q Consensus 2 qiAa~~lg~~~-~~sL~~lv~~~l-------g~~l-----d-----------K~~--q~-SdW~~rpLt~~Qi~YAA~Dv 54 (94)
++|+.+++... +.||..|++++| |..+ + |+. +. +||.. +++++..||+.||
T Consensus 92 mlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da 169 (698)
T 1x9m_A 92 LVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDV 169 (698)
T ss_dssp HHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHH
Confidence 47888888643 789999999987 5433 2 332 22 38975 7799999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q psy12569 55 FCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 55 ~~l~~l~~~l~~~l~~~~~~ 74 (94)
.++..||..|..+|.+.++.
T Consensus 170 ~~t~~L~~~L~~~L~~~~~~ 189 (698)
T 1x9m_A 170 VVTKALLEKLLSDKHYFPPE 189 (698)
T ss_dssp HHHHHHHHHHHTCTTTSCTT
T ss_pred HHHHHHHHHHHHHHHhccCc
Confidence 99999999999999888864
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=93.46 E-value=0.05 Score=43.74 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=42.3
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH-HHc
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC-ARQ 71 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l-~~~ 71 (94)
++|+.+++.+ +.||..|+++++|. +.| +|+.||.++..||..|.++| ++.
T Consensus 82 ~laAyLL~p~-~~~L~~La~~yl~~-~gk------------------~a~~DA~~t~~L~~~L~~~L~~~~ 132 (540)
T 4dfk_A 82 MLLAYLLDPS-NTTPEGVARRYGGE-WTE------------------EAGERAALSERLFANLWGRLEGEE 132 (540)
T ss_dssp HHHHHHHCTT-CCCHHHHHHHHTSC-CCS------------------CHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHhhh-hcc------------------chHHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999888 89999999999987 222 47899999999999999998 543
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=83.02 E-value=4.1 Score=27.36 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=38.7
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q psy12569 12 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIE 74 (94)
Q Consensus 12 ~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~ 74 (94)
.+.||..+++.++|+++..+. +-.-|..||.....||..+.+.+.+.+..
T Consensus 126 ~~~~L~~l~~~~lgi~~~~~~-------------~~H~Al~Da~ata~l~~~l~~~~~~~~~~ 175 (189)
T 1wlj_A 126 RRVSLRVLSERLLHKSIQNSL-------------LGHSSVEDARATMELYQISQRIRARRGLP 175 (189)
T ss_dssp --CCHHHHHHHHTCCCCSCCT-------------TCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHHcCCCCCCCC-------------CCcCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478999999998998876531 12357999999999999999998877643
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=76.89 E-value=2.4 Score=29.38 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=34.0
Q ss_pred ccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Q psy12569 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 73 (94)
Q Consensus 14 ~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~ 73 (94)
.+|..+++.+ |+.++ ..+-.+|..||.....||..|.+++.+.|.
T Consensus 182 ~~L~~l~~~~-gi~~~--------------~~~~H~Al~DA~~ta~l~~~l~~~l~~~~~ 226 (235)
T 3v9w_A 182 TVLSKACQTA-GMDFD--------------STQAHSALYDTERTAVLFCEIVNRWKRLGG 226 (235)
T ss_dssp CSHHHHHHHH-TCCCC--------------TTTTTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHc-CCCCC--------------CCCCcChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677777654 54332 223578999999999999999999998774
No 13
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=70.17 E-value=5.1 Score=27.62 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=31.3
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12569 13 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 69 (94)
Q Consensus 13 ~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~ 69 (94)
+.+|..++++++|+... .-.-|..||..+..|+..+.+.+.
T Consensus 171 ~~~L~~l~~~~~gi~~~----------------~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 171 GYSLGSLFHRYFRAEPS----------------AAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp CCSHHHHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHhCCCCc----------------cCccHHHHHHHHHHHHHHHHHHHH
Confidence 67888888877887642 247799999999999999887654
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=68.30 E-value=4.1 Score=27.24 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=29.8
Q ss_pred CccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q psy12569 13 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 71 (94)
Q Consensus 13 ~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~ 71 (94)
+.+|..+++. +|+.... -..|..||.....|+..+.+..++.
T Consensus 138 ~~~L~~l~~~-~gi~~~~----------------~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 138 SYSLDSVVEK-LGLGPFR----------------HHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp CCSHHHHHHH-TTCCSTT----------------CCHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCHHHHHHH-cCCCCCC----------------CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888875 5765431 3589999999999999887654443
No 15
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=67.32 E-value=7.4 Score=34.31 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCCc--cHHHHHHHHhCC-ccCCccc--ccCCCCCCCC---HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy12569 11 GSPQ--SLSTLVLKCFGK-TLNKQDQ--FSNWENRPLR---PSQISYAALDAFCLLQVYQVLHDQCAR 70 (94)
Q Consensus 11 ~~~~--sL~~lv~~~lg~-~ldK~~q--~SdW~~rpLt---~~Qi~YAA~Dv~~l~~l~~~l~~~l~~ 70 (94)
+... ||.++.+-+||+ .+||+.+ ...-+...+- ++=+.|-|.||.....||.++.....+
T Consensus 282 sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~e 349 (1172)
T 3ikm_A 282 SSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLE 349 (1172)
T ss_dssp CCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3456 899999999997 9999863 2333222221 233899999999999999999887544
No 16
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=62.22 E-value=18 Score=20.38 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCchhhHHHhhhh
Q psy12569 41 PLRPSQISYAALDAFCLLQVYQVLHDQCARQGIELGPLLTEVLSS 85 (94)
Q Consensus 41 pLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~~~~~e~~~~~~~~ 85 (94)
|||++++.-+ ..+...+....++.|+...++++.+.-+
T Consensus 1 ~lt~~~~~~~-------~~l~~~l~~~r~~~gltq~~lA~~~gvs 38 (80)
T 3kz3_A 1 SLTQEQLEDA-------RRLKAIWEKKKNELGLSYESVADKMGMG 38 (80)
T ss_dssp CCCHHHHHHH-------HHHHHHHHHHHHHHTCCHHHHHHHTTSC
T ss_pred CCCHHHHHHH-------HHHHHHHHHHHHHcCCCHHHHHHHhCcC
Confidence 7888888654 3456677777778899988888775433
No 17
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=60.08 E-value=11 Score=25.88 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=32.8
Q ss_pred ccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-CCc
Q psy12569 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQG-IEL 75 (94)
Q Consensus 14 ~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~~~~-~~~ 75 (94)
.+|..+++. +|+.++. .+-.-|..||.....|+..+.+++.+.| |+.
T Consensus 174 ~~L~~l~~~-~gi~~~~--------------~~~H~Al~Da~~ta~l~~~l~~~~~~~~~~~~ 221 (224)
T 2f96_A 174 TVLAKACQA-AGMEFDN--------------REAHSARYDTEKTAELFCGIVNRWKEMGGWMD 221 (224)
T ss_dssp CSHHHHHHH-TTCCCCT--------------TSCCCHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred CCHHHHHHH-cCCCcCC--------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 466666664 4665421 2234589999999999999999998876 443
No 18
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=57.36 E-value=14 Score=25.99 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=32.4
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy12569 12 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQC 68 (94)
Q Consensus 12 ~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l 68 (94)
.+.+|..++++++|+..... .=|..||..+..|+..+.+.+
T Consensus 175 ~~~~L~~l~~~~~gi~~~~~----------------H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 175 KSYSLGSIYTRLYWQAPTDS----------------HTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp CCCSHHHHHHHHHSSCCSST----------------TSHHHHHHHHHHHHTSSHHHH
T ss_pred CCcCHHHHHHHHhCCCCCCC----------------cChHHHHHHHHHHHHHHHHHH
Confidence 46899999999999976532 237999999999988776654
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=53.88 E-value=21 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12569 12 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 69 (94)
Q Consensus 12 ~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~ 69 (94)
.+.+|..++++++|+.....+ =|..||..+..||.++.+.+.
T Consensus 175 ~~~~L~~L~~~l~gi~~~~aH----------------rAl~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 175 KSYSLGSIYTRLYWQAPTDSH----------------TAEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp CCCSHHHHHHHHHSSCCSCSS----------------SHHHHHHHHHHHHHSSHHHHH
T ss_pred CCCCHHHHHHHhcCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 468999999998999765332 278999999999998777653
No 20
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=45.12 E-value=30 Score=29.07 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=37.2
Q ss_pred hhchhhcCCCCCccHHHHHHHHhCCccCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy12569 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCA 69 (94)
Q Consensus 2 qiAa~~lg~~~~~sL~~lv~~~lg~~ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~~l~ 69 (94)
.+|+-++... ++||..|++++ | | +|. ++ || .||.+++.++..+..+|.
T Consensus 374 ~laayLl~p~-~~~l~~l~~~~-g----k-----~~~------~~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 374 MLLAYLLDPS-NTTPEGVARRY-G----G-----EWT------EE--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp HHHHHHHCTT-CCSTTHHHHHH-S----C-----CCC------SS--HH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCC-CCCHHHHHHHh-C----C-----Cch------HH--HH-HHHHHHHHHHHHHHHHHh
Confidence 3667777765 78999999998 3 2 242 12 88 699999999999999987
No 21
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=41.32 E-value=72 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=34.9
Q ss_pred CccHHHHHHHHhCCccCCcc------cccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy12569 13 PQSLSTLVLKCFGKTLNKQD------QFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64 (94)
Q Consensus 13 ~~sL~~lv~~~lg~~ldK~~------q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l 64 (94)
+.||+.+++.+. ....|.. +.-+| .+.++-+.|...||..+..++...
T Consensus 127 ~~SL~~~a~~f~-~~~~K~~~py~~~~~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 127 PFPVKKIAKDFK-LTVLKGDIDYHKERPVGY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp CSCHHHHHHHTT-CCCCSSCCCTTSCCCTTC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhC-CcccCCccCccccCcccc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 579999888654 3333433 22234 488999999999999999998865
No 22
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=39.46 E-value=19 Score=27.06 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=35.0
Q ss_pred CccHHHHHHHHhCCc-cCCcccccCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy12569 13 PQSLSTLVLKCFGKT-LNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64 (94)
Q Consensus 13 ~~sL~~lv~~~lg~~-ldK~~q~SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l 64 (94)
+.+|..+++++||.. .+-....++|-. .=...-++|...||.....|+.++
T Consensus 284 sysL~~Va~~~Lg~~K~d~~~~i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 284 SFSLESVAQHETKKGKLPYDGPINKLRE-TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp CCSHHHHHHHHHSCCCCCCSSCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCcHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999963 222133333322 111344899999999999999873
No 23
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=39.00 E-value=51 Score=23.77 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=26.7
Q ss_pred CCCCCCCCHHHHH-HHHHhHHHHHHHHHHHHHHHHHc
Q psy12569 36 NWENRPLRPSQIS-YAALDAFCLLQVYQVLHDQCARQ 71 (94)
Q Consensus 36 dW~~rpLt~~Qi~-YAA~Dv~~l~~l~~~l~~~l~~~ 71 (94)
-|....||.+|++ |+.+|-+|+..+-+.+...+.+.
T Consensus 32 ~l~~G~L~~e~~r~yv~qdy~Yl~~f~r~~A~i~ak~ 68 (258)
T 3hlx_A 32 AMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANC 68 (258)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 4556689999966 78899999987666666555544
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=33.00 E-value=49 Score=27.31 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=37.1
Q ss_pred CccHHHHHHHHhCCccCC-c-ccc-cCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHH
Q psy12569 13 PQSLSTLVLKCFGKTLNK-Q-DQF-SNWENRPLRPSQISYAALDAFCLLQVYQVLHD 66 (94)
Q Consensus 13 ~~sL~~lv~~~lg~~ldK-~-~q~-SdW~~rpLt~~Qi~YAA~Dv~~l~~l~~~l~~ 66 (94)
+.+|..+++++||..-.. + ... .-|...+--..-++|...||.....|+..+..
T Consensus 272 sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 272 TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 689999999999984321 1 122 23444431155689999999999999876654
No 25
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=28.10 E-value=33 Score=18.31 Aligned_cols=11 Identities=36% Similarity=0.752 Sum_probs=8.7
Q ss_pred CCCCCCHHHHH
Q psy12569 38 ENRPLRPSQIS 48 (94)
Q Consensus 38 ~~rpLt~~Qi~ 48 (94)
.+||||++.+.
T Consensus 19 RNrpltDEeLD 29 (39)
T 3lqv_P 19 RNRPLSDEELD 29 (39)
T ss_dssp TTCCCCHHHHH
T ss_pred hcCCCCHHHHH
Confidence 46899999864
No 26
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.32 E-value=2.9e+02 Score=23.15 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=21.8
Q ss_pred cccCCCCCCCCHHHHHHHHHhHHH---HHHHHHHHHHHHHH
Q psy12569 33 QFSNWENRPLRPSQISYAALDAFC---LLQVYQVLHDQCAR 70 (94)
Q Consensus 33 q~SdW~~rpLt~~Qi~YAA~Dv~~---l~~l~~~l~~~l~~ 70 (94)
...++-.+|+|.+|-.+| .|+.+ .-.+|..+..++++
T Consensus 406 ~~~e~v~~~~~~~qA~~~-rdalAK~lY~rLF~wlV~~IN~ 445 (783)
T 4db1_A 406 VGNEYVTKGQNVQQVIYA-TGALAKAVYERMFNWMVTRINA 445 (783)
T ss_dssp ----CCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCeeEeeCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999998776 45543 23455555555554
No 27
>2vwa_A Putative uncharacterized protein PF13_0012; unknown function; HET: PTY; 2.5A {Plasmodium falciparum}
Probab=21.37 E-value=96 Score=19.54 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHH
Q psy12569 41 PLRPSQISYAALDAFCLLQVYQVLHDQ 67 (94)
Q Consensus 41 pLt~~Qi~YAA~Dv~~l~~l~~~l~~~ 67 (94)
.||.+|-.|-.+|--|+..+-+.|.+.
T Consensus 41 ~LSn~Qq~y~ind~dY~rkiVQ~L~E~ 67 (101)
T 2vwa_A 41 HLSNDQKDSHVNNMEYMQKFVQGLQEN 67 (101)
T ss_dssp HSCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHhchHHHHHHHHHHHHhc
Confidence 489999999999999998888777663
No 28
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=20.42 E-value=45 Score=16.34 Aligned_cols=17 Identities=18% Similarity=0.675 Sum_probs=13.4
Q ss_pred HhCCccCCcccccCCCC
Q psy12569 23 CFGKTLNKQDQFSNWEN 39 (94)
Q Consensus 23 ~lg~~ldK~~q~SdW~~ 39 (94)
++|.--|.++|..||.+
T Consensus 5 ymgtcqdepeqlddw~r 21 (28)
T 3ro2_B 5 YMGTCQDEPEQLDDWNR 21 (28)
T ss_dssp CCCSCCCCCCCCCCTTT
T ss_pred eeccccCCcccchhHHH
Confidence 45666788889999986
Done!