Your job contains 1 sequence.
>psy12569
MRIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQV
YQVLHDQCARQGIELGPLLTEVLSSHAVTTKKST
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12569
(94 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-091204-349 - symbol:exd3 "exonuclease 3'-5'... 161 1.2e-10 1
UNIPROTKB|F1RVW3 - symbol:EXD3 "Uncharacterized protein" ... 154 6.9e-10 1
FB|FBgn0032924 - symbol:Nbr "Nibbler" species:7227 "Droso... 151 9.3e-10 1
UNIPROTKB|E1BWV5 - symbol:EXD3 "Uncharacterized protein" ... 151 1.1e-09 1
UNIPROTKB|G3X7J6 - symbol:G3X7J6 "Uncharacterized protein... 150 1.5e-09 1
UNIPROTKB|F1Q045 - symbol:EXD3 "Uncharacterized protein" ... 144 8.0e-09 1
UNIPROTKB|Q8N9H8 - symbol:EXD3 "Probable exonuclease mut-... 138 3.6e-08 1
WB|WBGene00014220 - symbol:ZK1098.3 species:6239 "Caenorh... 126 6.0e-07 1
WB|WBGene00013256 - symbol:Y57A10A.13 species:6239 "Caeno... 125 6.8e-07 1
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 102 1.9e-05 2
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 103 6.1e-05 1
TAIR|locus:2152871 - symbol:AT5G24340 species:3702 "Arabi... 101 0.00016 1
WB|WBGene00003504 - symbol:mut-7 species:6239 "Caenorhabd... 101 0.00034 1
UNIPROTKB|P34607 - symbol:mut-7 "Probable exonuclease mut... 101 0.00034 1
GENEDB_PFALCIPARUM|PFA0290w - symbol:PFA0290w "DNA bindin... 97 0.00037 1
UNIPROTKB|Q8I282 - symbol:PFA_0290w "DNA binding protein,... 97 0.00037 1
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 95 0.00049 1
GENEDB_PFALCIPARUM|PF14_0112 - symbol:PF14_0112 "POM1, pu... 103 0.00051 1
UNIPROTKB|Q8ILY1 - symbol:POM1 "Pfprex" species:36329 "Pl... 103 0.00051 1
WB|WBGene00012290 - symbol:W05H12.2 species:6239 "Caenorh... 93 0.00062 1
>ZFIN|ZDB-GENE-091204-349 [details] [associations]
symbol:exd3 "exonuclease 3'-5' domain containing 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
ZFIN:ZDB-GENE-091204-349 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GeneTree:ENSGT00390000006843
InterPro:IPR002782 Pfam:PF01927 EMBL:BX005370 IPI:IPI00491719
Ensembl:ENSDART00000092011 Uniprot:E7EY45
Length = 861
Score = 161 (61.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
+ LS LV + GK LNK +Q SNWE RPLR SQ+ YAA DA+CLL +Y +L
Sbjct: 516 KGLSLLVQQVLGKPLNKSEQLSNWERRPLRTSQLRYAAADAYCLLDIYLIL 566
>UNIPROTKB|F1RVW3 [details] [associations]
symbol:EXD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GeneTree:ENSGT00390000006843
InterPro:IPR002782 Pfam:PF01927 OMA:QENWADH EMBL:CU928955
Ensembl:ENSSSCT00000006434 Uniprot:F1RVW3
Length = 863
Score = 154 (59.3 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 4 ATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 63
A G P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY
Sbjct: 504 APGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEEQLVYAAADAYCLLEVYWA 563
Query: 64 LHDQCAR 70
L + AR
Sbjct: 564 LCREPAR 570
>FB|FBgn0032924 [details] [associations]
symbol:Nbr "Nibbler" species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0044748
"3'-5'-exoribonuclease activity involved in mature miRNA 3'-end
processing" evidence=IMP] [GO:0044747 "mature miRNA 3'-end
processing" evidence=IMP] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 EMBL:AE014134 GO:GO:0003676 GO:GO:0030529
SUPFAM:SSF53098 GO:GO:0000175 GO:GO:0035196 eggNOG:NOG241966
GeneTree:ENSGT00390000006843 EMBL:AY118462 RefSeq:NP_610094.1
UniGene:Dm.30864 ProteinModelPortal:Q9VIF1 SMR:Q9VIF1 IntAct:Q9VIF1
MINT:MINT-282622 PaxDb:Q9VIF1 PRIDE:Q9VIF1
EnsemblMetazoa:FBtr0081499 GeneID:35385 KEGG:dme:Dmel_CG9247
UCSC:CG9247-RA FlyBase:FBgn0032924 InParanoid:Q9VIF1 OMA:AIDARCL
OrthoDB:EOG4X69QB PhylomeDB:Q9VIF1 GenomeRNAi:35385 NextBio:793268
Bgee:Q9VIF1 GO:GO:0043628 Uniprot:Q9VIF1
Length = 625
Score = 151 (58.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 29/50 (58%), Positives = 35/50 (70%)
Query: 15 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
+L+ L L C GK LNK +Q SNW NRPLR QI YAA+DA CL+ +Y L
Sbjct: 548 ALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAIDARCLMLIYNTL 597
>UNIPROTKB|E1BWV5 [details] [associations]
symbol:EXD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GeneTree:ENSGT00390000006843 InterPro:IPR002782 Pfam:PF01927
OMA:QENWADH EMBL:AADN02026991 EMBL:AADN02026982 EMBL:AADN02026983
EMBL:AADN02026965 EMBL:AADN02026966 EMBL:AADN02026967
EMBL:AADN02026968 EMBL:AADN02026969 EMBL:AADN02026970
EMBL:AADN02026971 EMBL:AADN02026972 EMBL:AADN02026973
EMBL:AADN02026974 EMBL:AADN02026975 EMBL:AADN02026976
EMBL:AADN02026977 EMBL:AADN02026978 EMBL:AADN02026979
EMBL:AADN02026980 EMBL:AADN02026981 EMBL:AADN02026984
EMBL:AADN02026985 EMBL:AADN02026986 EMBL:AADN02026987
EMBL:AADN02026988 EMBL:AADN02026989 EMBL:AADN02026990
EMBL:AADN02026992 EMBL:AADN02026993 EMBL:AADN02026994
EMBL:AADN02039946 IPI:IPI00573845 ProteinModelPortal:E1BWV5
Ensembl:ENSGALT00000014570 Uniprot:E1BWV5
Length = 725
Score = 151 (58.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVL 64
+ LS LV GK L+K +Q SNWE RPLR QI YAA DA+CLL+VY+ L
Sbjct: 514 KGLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKL 564
>UNIPROTKB|G3X7J6 [details] [associations]
symbol:G3X7J6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GeneTree:ENSGT00390000006843
OMA:QENWADH EMBL:DAAA02032393 EMBL:DAAA02032394
Ensembl:ENSBTAT00000032625 Uniprot:G3X7J6
Length = 724
Score = 150 (57.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/69 (46%), Positives = 40/69 (57%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
R A P+ LS LV + GK L+K Q SNW+ RPL Q+ YAA DA+CLL+VY
Sbjct: 500 RPAPAVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEGQLVYAAADAYCLLEVY 559
Query: 62 QVLHDQCAR 70
L + AR
Sbjct: 560 WALCREPAR 568
>UNIPROTKB|F1Q045 [details] [associations]
symbol:EXD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GeneTree:ENSGT00390000006843 InterPro:IPR002782 Pfam:PF01927
OMA:QENWADH EMBL:AAEX03006727 EMBL:AAEX03006728
Ensembl:ENSCAFT00000030921 Uniprot:F1Q045
Length = 850
Score = 144 (55.7 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 4 ATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQV 63
A G + LS LV + G+ L+K Q SNW+ RPL Q+ YAA DA+CLL+VYQ
Sbjct: 484 ALGRGEARGLRGLSLLVQQVLGRPLDKAQQLSNWDRRPLSEEQLVYAAADAYCLLEVYQT 543
Query: 64 L 64
L
Sbjct: 544 L 544
>UNIPROTKB|Q8N9H8 [details] [associations]
symbol:EXD3 "Probable exonuclease mut-7 homolog"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
EMBL:BX322799 UniGene:Hs.495553 GeneCards:GC09M140201
HGNC:HGNC:26023 ChiTaRS:EXD3 eggNOG:NOG241966 InterPro:IPR002782
Pfam:PF01927 EMBL:AB061798 EMBL:AK055004 EMBL:AK094438
EMBL:BC037355 EMBL:BC110879 IPI:IPI00413242 IPI:IPI00884892
IPI:IPI00884936 IPI:IPI00885207 RefSeq:NP_060290.3 HSSP:Q14191
ProteinModelPortal:Q8N9H8 SMR:Q8N9H8 STRING:Q8N9H8 DMDM:308153580
PeptideAtlas:Q2TAK4 PRIDE:Q8N9H8 Ensembl:ENST00000340951
Ensembl:ENST00000342129 Ensembl:ENST00000479452 GeneID:54932
KEGG:hsa:54932 UCSC:uc004cmp.2 UCSC:uc004cmr.3 UCSC:uc010ncf.1
CTD:54932 HPA:HPA047395 neXtProt:NX_Q8N9H8 PharmGKB:PA164719422
HOVERGEN:HBG108161 InParanoid:Q8N9H8 OMA:QENWADH OrthoDB:EOG4MPHPR
GenomeRNAi:54932 NextBio:58039 ArrayExpress:Q8N9H8 Bgee:Q8N9H8
Genevestigator:Q8N9H8 Uniprot:Q8N9H8
Length = 876
Score = 138 (53.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
+ LS LV + G L+K Q SNW+ RPL Q+ YAA DA+CLL+V+Q L + AR
Sbjct: 516 RGLSLLVQQVLGTALDKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPAR 572
>WB|WBGene00014220 [details] [associations]
symbol:ZK1098.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
EMBL:Z22176 eggNOG:NOG241966 GeneTree:ENSGT00390000006843
PIR:C88558 PIR:S40926 RefSeq:NP_499104.1 UniGene:Cel.9500
ProteinModelPortal:P34603 SMR:P34603 PaxDb:P34603
EnsemblMetazoa:ZK1098.3 GeneID:176346 KEGG:cel:CELE_ZK1098.3
UCSC:ZK1098.3 CTD:176346 WormBase:ZK1098.3 HOGENOM:HOG000019150
InParanoid:P34603 OMA:PLILCDK NextBio:892176 Uniprot:P34603
Length = 784
Score = 126 (49.4 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 8 STQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQ 67
ST+ S LS L G ++K +Q NW+ RPLR +QI YA +DA + +V+Q + +
Sbjct: 561 STKTS--KLSVLADHLVGLKMDKSEQCGNWQCRPLRRNQIIYAVMDAVAVFEVFQKIVEV 618
Query: 68 CARQGIELGPLLTEVLSSHAVTTKK 92
+ ++ LL E SH +T KK
Sbjct: 619 VRKHELDAEKLLVE---SHMITVKK 640
>WB|WBGene00013256 [details] [associations]
symbol:Y57A10A.13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 EMBL:AL117195
GeneTree:ENSGT00390000006843 PIR:T31632 PIR:T31633
RefSeq:NP_496590.1 ProteinModelPortal:Q9NA69 STRING:Q9NA69
PaxDb:Q9NA69 EnsemblMetazoa:Y57A10A.13 GeneID:174858
KEGG:cel:CELE_Y57A10A.13 UCSC:Y57A10A.13 CTD:174858
WormBase:Y57A10A.13 eggNOG:NOG281262 HOGENOM:HOG000021974
InParanoid:Q9NA69 OMA:MILAYQL NextBio:885800 Uniprot:Q9NA69
Length = 710
Score = 125 (49.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 73
+ LS + K G+ L+K +Q S W+ RPLR Q+ YAA+DA+C+L +Y+ A+ GI
Sbjct: 627 KGLSFICEKLLGRPLDKTEQCSVWDRRPLRCLQLRYAAMDAYCMLLLYEKCATIFAKLGI 686
Query: 74 ELGPLLTE 81
+ +++
Sbjct: 687 NVNDFVSK 694
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 15 SLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQ 71
SL+ L L+ L+KQ Q ++W RPLR + I+YA D LL Y +L +Q +Q
Sbjct: 392 SLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQ 448
Score = 34 (17.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 69 ARQGIELGPLLTEVLSSHAVTTKKS 93
AR+ I++ +L E SS KKS
Sbjct: 789 ARRNIDVSVVLGESSSSSDPKKKKS 813
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 2 RIATGASTQGSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
+IA G + LV C G+ ++K + ++W RPL +Q+SYAA D L Q+Y
Sbjct: 103 QIAASLCGMGHGLGYAKLVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLY 162
Query: 62 QVLHDQCARQ 71
L ++ Q
Sbjct: 163 PQLAEKLQTQ 172
>TAIR|locus:2152871 [details] [associations]
symbol:AT5G24340 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;ISS] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 EMBL:CP002688 EMBL:AB016884
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR002782 Pfam:PF01927 EMBL:BT006449 EMBL:AK227650
IPI:IPI00549160 RefSeq:NP_197822.1 UniGene:At.30964
ProteinModelPortal:Q9FIN8 SMR:Q9FIN8 EnsemblPlants:AT5G24340.1
GeneID:832504 KEGG:ath:AT5G24340 TAIR:At5g24340
HOGENOM:HOG000242294 InParanoid:Q9FIN8 KO:K09122 OMA:NLEFWQC
PhylomeDB:Q9FIN8 ProtClustDB:CLSN2686327 Genevestigator:Q9FIN8
Uniprot:Q9FIN8
Length = 505
Score = 101 (40.6 bits), Expect = 0.00016, P = 0.00016
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 14 QSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGI 73
+SL+ + + +L+K+ Q S+W RPL Q YAA DA CLLQ++ V +GI
Sbjct: 151 KSLAAICKEMLDISLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLV-EGI 209
Query: 74 ELGPL 78
+ L
Sbjct: 210 TVQDL 214
>WB|WBGene00003504 [details] [associations]
symbol:mut-7 species:6239 "Caenorhabditis elegans"
[GO:0005215 "transporter activity" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0008289 "lipid binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000335 "negative regulation of transposition,
DNA-mediated" evidence=IMP] [GO:0016458 "gene silencing"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0005829 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0048471 GO:GO:0002119
GO:GO:0016246 GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0008408 EMBL:Z22176 PIR:S40930 RefSeq:NP_499105.1
ProteinModelPortal:P34607 SMR:P34607 IntAct:P34607 STRING:P34607
PaxDb:P34607 EnsemblMetazoa:ZK1098.8 GeneID:176347
KEGG:cel:CELE_ZK1098.8 UCSC:ZK1098.8 CTD:176347 WormBase:ZK1098.8
eggNOG:NOG241966 GeneTree:ENSGT00390000006843 HOGENOM:HOG000019149
InParanoid:P34607 OMA:GFDMRND NextBio:892180 GO:GO:0000335
InterPro:IPR002782 Pfam:PF01927 Uniprot:P34607
Length = 910
Score = 101 (40.6 bits), Expect = 0.00034, P = 0.00034
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 62
L+ L G L+K +Q SNW+ RPLR QI YAALDA +++ ++
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFK 598
>UNIPROTKB|P34607 [details] [associations]
symbol:mut-7 "Probable exonuclease mut-7" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0005829 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0048471 GO:GO:0002119 GO:GO:0016246
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
EMBL:Z22176 PIR:S40930 RefSeq:NP_499105.1 ProteinModelPortal:P34607
SMR:P34607 IntAct:P34607 STRING:P34607 PaxDb:P34607
EnsemblMetazoa:ZK1098.8 GeneID:176347 KEGG:cel:CELE_ZK1098.8
UCSC:ZK1098.8 CTD:176347 WormBase:ZK1098.8 eggNOG:NOG241966
GeneTree:ENSGT00390000006843 HOGENOM:HOG000019149 InParanoid:P34607
OMA:GFDMRND NextBio:892180 GO:GO:0000335 InterPro:IPR002782
Pfam:PF01927 Uniprot:P34607
Length = 910
Score = 101 (40.6 bits), Expect = 0.00034, P = 0.00034
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQ 62
L+ L G L+K +Q SNW+ RPLR QI YAALDA +++ ++
Sbjct: 552 LADLTHYLLGLELDKTEQCSNWQCRPLRKKQIVYAALDAVVVVETFK 598
>GENEDB_PFALCIPARUM|PFA0290w [details] [associations]
symbol:PFA0290w "DNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0003677 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL844501 RefSeq:XP_001350990.2
ProteinModelPortal:Q8I282 EnsemblProtists:PFA0290w:mRNA
GeneID:813195 KEGG:pfa:PFA_0290w HOGENOM:HOG000283827
ProtClustDB:CLSZ2432236 Uniprot:Q8I282
Length = 448
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 13 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
P SL +LV K L+K+ + SNW N L QI YAA+DA+ Q+Y
Sbjct: 214 PPSLQSLVKIYLNKFLDKKFRLSNWLNYSLLQEQILYAAVDAYASRQIY 262
>UNIPROTKB|Q8I282 [details] [associations]
symbol:PFA_0290w "DNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0003677 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL844501 RefSeq:XP_001350990.2
ProteinModelPortal:Q8I282 EnsemblProtists:PFA0290w:mRNA
GeneID:813195 KEGG:pfa:PFA_0290w HOGENOM:HOG000283827
ProtClustDB:CLSZ2432236 Uniprot:Q8I282
Length = 448
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 13 PQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
P SL +LV K L+K+ + SNW N L QI YAA+DA+ Q+Y
Sbjct: 214 PPSLQSLVKIYLNKFLDKKFRLSNWLNYSLLQEQILYAAVDAYASRQIY 262
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 95 (38.5 bits), Expect = 0.00049, P = 0.00049
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 11 GSPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCAR 70
G TLV K + L+K +F++W RPL +Q +YA D L Q+Y+ L A+
Sbjct: 116 GEQVGYETLVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAK 175
Query: 71 QG 72
G
Sbjct: 176 TG 177
>GENEDB_PFALCIPARUM|PF14_0112 [details] [associations]
symbol:PF14_0112 "POM1, putative" species:5833
"Plasmodium falciparum" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002562 InterPro:IPR007694
InterPro:IPR012337 Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868
PROSITE:PS51199 SMART:SM00474 SMART:SM00482 InterPro:IPR006171
GO:GO:0005739 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014187 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678
GO:GO:0003887 GO:GO:0032508 KO:K02335 GO:GO:0020011
GenomeReviews:AE014187_GR SMART:SM00493 HSSP:P00582
RefSeq:XP_001348285.1 ProteinModelPortal:Q8ILY1
EnsemblProtists:PF14_0112:mRNA GeneID:811693 KEGG:pfa:PF14_0112
EuPathDB:PlasmoDB:PF3D7_1411400 HOGENOM:HOG000281341
ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 103 (41.3 bits), Expect = 0.00051, P = 0.00051
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 75
L+ +V K L+KQ Q S W N L +Q+ YAA D+ CLL++Y+ L ++ ++ + +
Sbjct: 1566 LNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHI 1625
>UNIPROTKB|Q8ILY1 [details] [associations]
symbol:POM1 "Pfprex" species:36329 "Plasmodium falciparum
3D7" [GO:0005739 "mitochondrion" evidence=ISS] [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002562 InterPro:IPR007694 InterPro:IPR012337
Pfam:PF00476 Pfam:PF01612 PRINTS:PR00868 PROSITE:PS51199
SMART:SM00474 SMART:SM00482 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014187
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003678 GO:GO:0003887
GO:GO:0032508 KO:K02335 GO:GO:0020011 GenomeReviews:AE014187_GR
SMART:SM00493 HSSP:P00582 RefSeq:XP_001348285.1
ProteinModelPortal:Q8ILY1 EnsemblProtists:PF14_0112:mRNA
GeneID:811693 KEGG:pfa:PF14_0112 EuPathDB:PlasmoDB:PF3D7_1411400
HOGENOM:HOG000281341 ProtClustDB:CLSZ2446708 Uniprot:Q8ILY1
Length = 2016
Score = 103 (41.3 bits), Expect = 0.00051, P = 0.00051
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 16 LSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVYQVLHDQCARQGIEL 75
L+ +V K L+KQ Q S W N L +Q+ YAA D+ CLL++Y+ L ++ ++ + +
Sbjct: 1566 LNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHI 1625
>WB|WBGene00012290 [details] [associations]
symbol:W05H12.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 GO:GO:0040010 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 EMBL:Z81029 EMBL:Z82072
PIR:T18798 RefSeq:NP_493360.1 UniGene:Cel.23876
ProteinModelPortal:G5EDI9 EnsemblMetazoa:W05H12.2 GeneID:189230
KEGG:cel:CELE_W05H12.2 CTD:189230 WormBase:W05H12.2
GeneTree:ENSGT00530000069634 NextBio:941674 Uniprot:G5EDI9
Length = 329
Score = 93 (37.8 bits), Expect = 0.00062, P = 0.00062
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 12 SPQSLSTLVLKCFGKTLNKQDQFSNWENRPLRPSQISYAALDAFCLLQVY 61
S SL L L+ G LNK++ S+W LR QI YA +DA L +Y
Sbjct: 264 SMPSLKQLALEVTGIILNKEESLSDWVREVLRIDQIHYACMDAVILHHIY 313
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.129 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 94 94 0.00091 102 3 11 22 0.49 29
29 0.42 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 576 (61 KB)
Total size of DFA: 117 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.29u 0.12s 10.41t Elapsed: 00:00:01
Total cpu time: 10.29u 0.12s 10.41t Elapsed: 00:00:01
Start: Thu Aug 15 14:03:36 2013 End: Thu Aug 15 14:03:37 2013