BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1257
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/88 (59%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Query: 43 KILLEKWDPKGEYTRKFQEKFGDTYK------LFREFLRCEYSEENILFWLACEDLKKES 96
+ + +P E + + F K LFREFLR EYSEEN+LFWLACEDLKKE
Sbjct: 17 NLYFQSMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQ 76
Query: 97 NPDVIEEKARFIYEDYISILSPKEVTQD 124
N VIEEKAR IYEDYISILSPKEV+ D
Sbjct: 77 NKKVIEEKARMIYEDYISILSPKEVSLD 104
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A
Regulator Of G Protein Signaling
Length = 152
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 68 KLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+FR FLR EYSEEN+LFWLACE+LK E+N V++EKAR IYEDY+SILSPKEV+ D
Sbjct: 35 SVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLD 91
>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 142
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 55 YTRKFQEKFGDTYKL--FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDY 112
++ F E Y L FR FL+ E+SEENI FWLACED KK +P + KAR IY D+
Sbjct: 13 WSEAFDELLASKYGLAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLSSKARKIYTDF 72
Query: 113 ISILSPKEVTQD 124
I +PKE+ D
Sbjct: 73 IEKEAPKEINID 84
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 55 YTRKFQEKFGDTYKL--FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDY 112
++ F E Y L FR FL+ E+ EENI FWLACED KK +P + KAR IY D+
Sbjct: 23 WSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDF 82
Query: 113 ISILSPKEVTQD 124
I +PKE+ D
Sbjct: 83 IEKEAPKEINID 94
>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|D Chain D, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 137
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 55 YTRKFQEKFGDTYKL--FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDY 112
++ F E Y L FR FL+ E+ EENI FWLACED KK +P + KAR IY D+
Sbjct: 14 WSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDF 73
Query: 113 ISILSPKEVTQD 124
I +PKE+ D
Sbjct: 74 IEKEAPKEINID 85
>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 18
Length = 140
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
D + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKEV D
Sbjct: 27 DGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLD 86
>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
pdb|2OWI|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18
Length = 151
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
D + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKEV D
Sbjct: 23 DGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLD 82
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F+ FL+ E+SEEN+ FW+ACED KK +P + EKA+ IYE++I +PKEV D
Sbjct: 42 FKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKEVNID 96
>pdb|2I59|A Chain A, Solution Structure Of Rgs10
Length = 138
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 68 KLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122
K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +V
Sbjct: 26 KRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVN 80
>pdb|2DLR|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of
G-Protein Signaling 10
Length = 149
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 68 KLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122
K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +V
Sbjct: 30 KRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVN 84
>pdb|2IHB|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 153
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 68 KLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122
K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +V
Sbjct: 46 KRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVN 100
>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain
Length = 127
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 69 LFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQDP 125
+F+ FLR E+SEEN+ FWLACED KK + + KA+ I+ +YI+I + KEV D
Sbjct: 23 VFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNLDS 79
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KEV D
Sbjct: 76 FKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLD 130
>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
pdb|1EZY|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr
Length = 166
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KEV D
Sbjct: 30 FKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLD 84
>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
Length = 141
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+EV D
Sbjct: 31 FRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNID 85
>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein
Signaling 8, Rgs8
Length = 155
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+EV D
Sbjct: 52 FRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNID 106
>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7L|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 137
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PKEV D
Sbjct: 35 FHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNID 89
>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|D Chain D, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 129
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PKEV D
Sbjct: 27 FHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNID 81
>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|B Chain B, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|C Chain C, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|D Chain D, Structure Of The Regulator Of G-Protein Signaling 16
pdb|2BT2|E Chain E, Structure Of The Regulator Of G-Protein Signaling 16
Length = 161
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F FL+ E+SEEN+ FWLACE+ KK + + +A I+E++I +PKEV D
Sbjct: 50 FHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKEVNID 104
>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 140
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F FL+ E+SEEN+ FWLACE+ KK + + +A I+E++I +PKEV D
Sbjct: 29 FHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKEVNID 83
>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human)
pdb|2BV1|B Chain B, Regulator Of G-Protein Signalling 1 (Human)
pdb|2GTP|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|D Chain D, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 145
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 69 LFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+F FL+ E+SEENI FWLACED KK + D++ KA IY+ ++ + K++ D
Sbjct: 38 VFGSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKAEEIYKAFVHSDAAKQINID 92
>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14
Length = 154
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 55 YTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACEDLKK--ESNPDVIEEKARFIYEDY 112
+ R Q+ G Y F EFL+ E+S EN+ FW ACE ++ S+ + ++AR IY+++
Sbjct: 15 FERLLQDPLGLAY--FTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEF 72
Query: 113 IS--ILSPKEV 121
+S LSP +
Sbjct: 73 LSSQALSPVNI 83
>pdb|1KX8|A Chain A, Antennal Chemosensory Protein A6 From Mamestra Brassicae,
Tetragonal Form
pdb|1KX9|A Chain A, Antennal Chemosensory Protein A6 From The Moth Mamestra
Brassicae
pdb|1KX9|B Chain B, Antennal Chemosensory Protein A6 From The Moth Mamestra
Brassicae
pdb|1N8U|A Chain A, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1N8V|A Chain A, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1N8V|B Chain B, Chemosensory Protein In Complex With Bromo-Dodecanol
pdb|1K19|A Chain A, Nmr Solution Structure Of The Chemosensory Protein Csp2
From Moth Mamestra Brassicae
Length = 112
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEK 62
E +E++ ++ C+KCT +Q A VI L K+ E W+ L K+DP G + +K++++
Sbjct: 42 ELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDR 101
>pdb|2GVS|A Chain A, Nmr Solution Structure Of Cspsg4
Length = 109
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 8 IPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEK 62
IP L C KC Q + V++ L P+ W L K+DP G Y++K++++
Sbjct: 49 IPDALSNECAKCNEKQKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYEDR 103
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 114
F+ FLR E+S EN+ FW ACEDL K + ++EKA IY+ +++
Sbjct: 38 FQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLFLA 81
>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs6
Length = 148
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F FL E+S EN+ FWLA +DLKK+ DV ++ I++++++ +P + D
Sbjct: 28 FLRFLESEFSSENLRFWLAVQDLKKQPLQDVA-KRVEEIWQEFLAPGAPSAINLD 81
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYIS 114
F+ FLR E+S EN+ FW ACEDL K + ++EKA IY+ +++
Sbjct: 38 FQHFLRKEFSGENLGFWEACEDL-KYGDQSKVKEKAEEIYKLFLA 81
>pdb|2JNT|A Chain A, Structure Of Bombyx Mori Chemosensory Protein 1 In
Solution
Length = 108
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEK 62
E ++++ L+T CEKCT +Q A I L K+ E WK L +DP G++ +K++++
Sbjct: 39 ELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKWRKKYEDR 98
>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signaling 7
Length = 139
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F +FL E+S EN+ FWLA EDLKK +V + + I++++++ +P + D
Sbjct: 32 FLKFLESEFSSENLRFWLAVEDLKKRPIKEV-PSRVQEIWQEFLAPGAPSAINLD 85
>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
pdb|2A72|B Chain B, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs7
Length = 146
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F +FL E+S EN+ FWLA EDLKK +V + + I++++++ +P + D
Sbjct: 30 FLKFLESEFSSENLRFWLAVEDLKKRPIKEV-PSRVQEIWQEFLAPGAPSAINLD 83
>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human
Regulator Of G-Protein Signaling 12 (Rgs12)
Length = 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 55 YTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACE 90
+ R Q+ G Y F +FLR E+SEENILFW ACE
Sbjct: 19 FERLLQDPVGVRY--FSDFLRKEFSEENILFWQACE 52
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 23/81 (28%)
Query: 43 KILLEKW---------DPKGEYTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACEDLK 93
K+ +E+W DPKG + F+ FL+ E+S EN+ FW ACEDL
Sbjct: 292 KMRVERWAFNFSELIRDPKGRQS-------------FQYFLKKEFSGENLGFWEACEDL- 337
Query: 94 KESNPDVIEEKARFIYEDYIS 114
K + ++EKA IY+ +++
Sbjct: 338 KYGDQSKVKEKAEEIYKLFLA 358
>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
Length = 147
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYI 113
D LFR FL+ E + + FW AC +K D EEK AR IY YI
Sbjct: 24 DGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYI 76
>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
With A Samp Repeat From Apc
Length = 132
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYI 113
D LFR FL+ E + + FW AC +K D EEK AR IY YI
Sbjct: 18 DGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYI 70
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 26 KAVMVIRRLKKDYPEEWKILLEKWDPKGE-YTRKFQEKFGD----TYKLFREFLRCEY 78
KA+ ++ KK++ E I++ K DP+ E + R +EK G+ T L REF+R Y
Sbjct: 273 KAIEILSS-KKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELY 329
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 26 KAVMVIRRLKKDYPEEWKILLEKWDPKGE-YTRKFQEKFGD----TYKLFREFLRCEY 78
KA+ ++ KK++ E I++ K DP+ E + R +EK G+ T L REF+R Y
Sbjct: 272 KAIEILSS-KKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELY 328
>pdb|2R4W|A Chain A, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: M37f With Co Bound
pdb|2R4W|B Chain B, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: M37f With Co Bound
pdb|2Z85|A Chain A, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: M37f Unliganded
pdb|2Z85|B Chain B, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: M37f Unliganded
Length = 146
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALFTTLFADNQETIGYFKR 53
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 26 KAVMVIRRLKKDYPEEWKILLEKWDPKGE-YTRKFQEKFGD----TYKLFREFLRCEY 78
KA+ ++ KK++ E I++ K DP+ E + R +EK G+ T L REF+R Y
Sbjct: 272 KAIEILSS-KKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELY 328
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 13 QTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGD 65
+ L +K T Q ++ + K PE +ILL+K+ + + R +EKFGD
Sbjct: 542 EILFKKVTDDQI--IYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFGD 592
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDK--AVMVIRRLKKDYPEEWKILL 46
E +E+I ++C++C T+ AV +I + K+D EE +ILL
Sbjct: 25 EVKEDIGVGSYSVCKRCIHKATNXEFAVKIIDKSKRDPTEEIEILL 70
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDK--AVMVIRRLKKDYPEEWKILL 46
E +E+I ++C++C T+ AV +I + K+D EE +ILL
Sbjct: 25 EVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILL 70
>pdb|3SDH|A Chain A, High Resolution Crystallographic Analysis Of A
Cooperative Dimeric Hemoglobin
pdb|3SDH|B Chain B, High Resolution Crystallographic Analysis Of A
Cooperative Dimeric Hemoglobin
pdb|4SDH|A Chain A, High Resolution Crystallographic Analysis Of A
Cooperative Dimeric Hemoglobin
pdb|4SDH|B Chain B, High Resolution Crystallographic Analysis Of A
Cooperative Dimeric Hemoglobin
pdb|1HBI|A Chain A, Crystal Structure Of Oxygenated Scapharca Dimeric
Hemoglobin At 1.7 Angstroms Resolution
pdb|1HBI|B Chain B, Crystal Structure Of Oxygenated Scapharca Dimeric
Hemoglobin At 1.7 Angstroms Resolution
pdb|1NWI|A Chain A, Crystal Structure Of Co-hbi Transformed To An Unligated
State
pdb|1NWI|B Chain B, Crystal Structure Of Co-hbi Transformed To An Unligated
State
pdb|1NWI|C Chain C, Crystal Structure Of Co-hbi Transformed To An Unligated
State
pdb|1NWI|D Chain D, Crystal Structure Of Co-hbi Transformed To An Unligated
State
pdb|1NWN|A Chain A, Crystals Of Co-Hbi In Which The Structure Was Converted
To Its Unligated State, And Then Converted Back To Its
Original Co-Ligated State.
pdb|1NWN|B Chain B, Crystals Of Co-Hbi In Which The Structure Was Converted
To Its Unligated State, And Then Converted Back To Its
Original Co-Ligated State
Length = 146
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSE 80
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKRL---- 54
Query: 81 ENILFWLACEDLKKES 96
N+ +A + L+ S
Sbjct: 55 GNVSQGMANDKLRGHS 70
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 71 REFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSP 118
R + EY+ + + + KK+ PD+ E RF+ ++ +++P
Sbjct: 288 RNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAP 335
>pdb|1JZL|A Chain A, Crystal Structure Of Sapharca Inaequivalvis Hbi, I114m
Mutant Ligated To Carbon Monoxide.
pdb|1JZL|B Chain B, Crystal Structure Of Sapharca Inaequivalvis Hbi, I114m
Mutant Ligated To Carbon Monoxide.
pdb|1JZM|A Chain A, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114m
Mutant In The Absence Of Ligand.
pdb|1JZM|B Chain B, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114m
Mutant In The Absence Of Ligand
Length = 146
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSE 80
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKRL---- 54
Query: 81 ENILFWLACEDLKKES 96
N+ +A + L+ S
Sbjct: 55 GNVSQGMANDKLRGHS 70
>pdb|3UGZ|A Chain A, Hbi (L36a) Co Bound
pdb|3UGZ|B Chain B, Hbi (L36a) Co Bound
pdb|3UHQ|A Chain A, Hbi (L36a) Deoxy
pdb|3UHQ|B Chain B, Hbi (L36a) Deoxy
Length = 146
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVAAMTTLFADNQETIGYFKR 53
>pdb|1JZK|A Chain A, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant (Deoxy)
pdb|1JZK|B Chain B, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant (Deoxy)
pdb|1JZK|C Chain C, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant (Deoxy)
pdb|1JZK|D Chain D, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant (Deoxy)
pdb|1JWN|A Chain A, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant Ligated To Carbon Monoxide.
pdb|1JWN|B Chain B, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant Ligated To Carbon Monoxide.
pdb|1JWN|C Chain C, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant Ligated To Carbon Monoxide.
pdb|1JWN|D Chain D, Crystal Structure Of Scapharca Inaequivalvis Hbi, I114f
Mutant Ligated To Carbon Monoxide
Length = 146
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSE 80
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKRL---- 54
Query: 81 ENILFWLACEDLKKES 96
N+ +A + L+ S
Sbjct: 55 GNVSQGMANDKLRGHS 70
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 30 VIRRLKKDYPEEWKILLE 47
+++RL+K YPE+W+ ++E
Sbjct: 149 LLKRLQKAYPEQWQSIVE 166
>pdb|3UHG|A Chain A, Hbi (L36m) Co Bound
pdb|3UHG|B Chain B, Hbi (L36m) Co Bound
pdb|3UHS|A Chain A, Hbi (L36m) Deoxy
pdb|3UHS|B Chain B, Hbi (L36m) Deoxy
Length = 146
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVAMMTTLFADNQETIGYFKR 53
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 35 KKDYPEEWKILLEKWDPKGE-YTRKFQEKFGD----TYKLFREFLRCEYS 79
KK++ E I++ K DP+ E + R +EK G+ T L REF+R Y
Sbjct: 65 KKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG 114
>pdb|3UH3|A Chain A, Hbi (L36v) Co Bound
pdb|3UH3|B Chain B, Hbi (L36v) Co Bound
pdb|3UHT|A Chain A, Hbi (L36v) Deoxy
pdb|3UHT|B Chain B, Hbi (L36v) Deoxy
Length = 146
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVAVMTTLFADNQETIGYFKR 53
>pdb|3DS1|A Chain A, Hiv-1 Capsid C-Terminal Domain Mutant (E187a) In Complex
With An Inhibitor Of Particle Assembly (Cai)
pdb|3DTJ|A Chain A, Hiv-1 Capsid C-Terminal Domain Mutant (E187a)
pdb|3DTJ|B Chain B, Hiv-1 Capsid C-Terminal Domain Mutant (E187a)
pdb|3DTJ|C Chain C, Hiv-1 Capsid C-Terminal Domain Mutant (E187a)
pdb|3DTJ|D Chain D, Hiv-1 Capsid C-Terminal Domain Mutant (E187a)
Length = 86
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 60 QEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPD 99
+E F D F + LR E + + + W+ L + +NPD
Sbjct: 13 KEPFRDYVDRFYKTLRAEQASQEVKNWMTATLLVQNANPD 52
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 326 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 366
>pdb|3UGY|A Chain A, Hbi (F80y) Co Bound
pdb|3UGY|B Chain B, Hbi (F80y) Co Bound
pdb|3UHN|A Chain A, Hbi (F80y) Deoxy
pdb|3UHN|B Chain B, Hbi (F80y) Deoxy
Length = 146
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|2AUO|A Chain A, Residue F4 Plays A Key Role In Modulating The Oxygen
Affinity And Cooperatrivity In Scapharca Dimeric
Hemoglobin
pdb|2AUO|B Chain B, Residue F4 Plays A Key Role In Modulating The Oxygen
Affinity And Cooperatrivity In Scapharca Dimeric
Hemoglobin
pdb|2AUP|A Chain A, Residue F4 Plays A Key Role In Modulating Oxygen
Affinity And Cooperativity In Scapharca Dimeric
Hemoglobin
pdb|2AUP|B Chain B, Residue F4 Plays A Key Role In Modulating Oxygen
Affinity And Cooperativity In Scapharca Dimeric
Hemoglobin
Length = 146
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|2AUQ|A Chain A, Hbi (F97v) Co Bound
pdb|2AUQ|B Chain B, Hbi (F97v) Co Bound
pdb|2AUR|A Chain A, F97v (No Ligand Bound)
pdb|2AUR|B Chain B, F97v (No Ligand Bound)
Length = 146
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPK 52
E RE P + LC+ + +++ KKDYP+ +KI+LE D K
Sbjct: 38 EARE--PGSGRRLCD----------LFMVKPSKKDYPDYYKIILEPMDLK 75
>pdb|2AV0|A Chain A, F97l With Co Bound
pdb|2AV0|B Chain B, F97l With Co Bound
pdb|2AV3|A Chain A, F97l- No Ligand
pdb|2AV3|B Chain B, F97l- No Ligand
Length = 146
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|4HBI|A Chain A, Scapharca Dimeric Hemoglobin, Mutant T72i, Deoxy Form
pdb|4HBI|B Chain B, Scapharca Dimeric Hemoglobin, Mutant T72i, Deoxy Form
pdb|5HBI|A Chain A, Scapharca Dimeric Hemoglobin, Mutant T72i, Co-Liganded
Form
pdb|5HBI|B Chain B, Scapharca Dimeric Hemoglobin, Mutant T72i, Co-Liganded
Form
Length = 146
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|1NXF|A Chain A, Ligand-Linked Transitions Of Deoxyhbi Crystals Exposed
To Co.
pdb|1NXF|B Chain B, Ligand-Linked Transitions Of Deoxyhbi Crystals Exposed
To Co.
pdb|3G46|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroform Bound To The Xe4 Cavity
pdb|3G46|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroform Bound To The Xe4 Cavity
pdb|3G4Q|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroform Bound To The Xe4 Cavity
pdb|3G4Q|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroform Bound To The Xe4 Cavity
pdb|3G4R|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Dichloroethane Bound To The Xe4 Cavity
pdb|3G4R|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Dichloroethane Bound To The Xe4 Cavity
pdb|3G4U|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Dichloropropane Bound To The Xe4 Cavity
pdb|3G4U|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Dichloropropane Bound To The Xe4 Cavity
pdb|3G4V|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloropentane Bound To The Xe4 Cavity
pdb|3G4V|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloropentane Bound To The Xe4 Cavity
pdb|3G4W|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chlorobenzene Bound To The Xe4 Cavity
pdb|3G4W|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chlorobenzene Bound To The Xe4 Cavity
pdb|3G4Y|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloromethyl Benzene Bound To The Xe4 Cavity
pdb|3G4Y|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloromethyl Benzene Bound To The Xe4 Cavity
pdb|3G52|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroethyl Benzene Bound To The Xe4 Cavity
pdb|3G52|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloroethyl Benzene Bound To The Xe4 Cavity
pdb|3G53|A Chain A, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloropropyl Benzene Bound To The Xe4 Cavity
pdb|3G53|B Chain B, Ligand Migration And Cavities Within Scapharca Dimeric
Hemoglobin: Wild Type With Co Bound To Heme And
Chloropropyl Benzene Bound To The Xe4 Cavity
Length = 146
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UHB|A Chain A, Hbi (R104k) Co Bound
pdb|3UHB|B Chain B, Hbi (R104k) Co Bound
pdb|3UHY|A Chain A, Hbi (R104k) Deoxy
pdb|3UHY|B Chain B, Hbi (R104k) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|2R4X|A Chain A, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: H69vI114M CO COMPLEX
pdb|2R4X|B Chain B, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: H69vI114M CO COMPLEX
pdb|2R4Y|A Chain A, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: H69vI114M UNLIGANDED
pdb|2R4Y|B Chain B, Ligand Migration And Binding In The Dimeric Hemoglobin
Of Scapharca Inaequivalvis: H69vI114M UNLIGANDED
Length = 146
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|6HBI|A Chain A, Scapharca Dimeric Hemoglobin, Mutant T72v, Deoxy Form
pdb|6HBI|B Chain B, Scapharca Dimeric Hemoglobin, Mutant T72v, Deoxy Form
pdb|7HBI|A Chain A, Scapharca Dimeric Hemoglobin, Mutant T72v, Co-liganded
Form
pdb|7HBI|B Chain B, Scapharca Dimeric Hemoglobin, Mutant T72v, Co-liganded
Form
Length = 146
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UHI|A Chain A, Hbi (K96r) Co Bound
pdb|3UHI|B Chain B, Hbi (K96r) Co Bound
pdb|3UHI|C Chain C, Hbi (K96r) Co Bound
pdb|3UHI|D Chain D, Hbi (K96r) Co Bound
pdb|3UHK|A Chain A, Hbi (K96r) Without Ligand Bound
pdb|3UHK|B Chain B, Hbi (K96r) Without Ligand Bound
pdb|3UHK|C Chain C, Hbi (K96r) Without Ligand Bound
pdb|3UHK|D Chain D, Hbi (K96r) Without Ligand Bound
Length = 146
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UHD|A Chain A, Hbi (N100a) Co Bound
pdb|3UHD|B Chain B, Hbi (N100a) Co Bound
pdb|3UHX|A Chain A, Hbi (N100a) Deoxy
pdb|3UHX|B Chain B, Hbi (N100a) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UHC|A Chain A, Hbi (N79a) Co Bound
pdb|3UHC|B Chain B, Hbi (N79a) Co Bound
pdb|3UHW|A Chain A, Hbi (N79a) Deoxy
pdb|3UHW|B Chain B, Hbi (N79a) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UH6|A Chain A, Hbi (T72a) Co Bound
pdb|3UH6|B Chain B, Hbi (T72a) Co Bound
pdb|3UHZ|A Chain A, Hbi (T72a) Deoxy
pdb|3UHZ|B Chain B, Hbi (T72a) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|3UH7|A Chain A, Hbi (T72g) Co Bound
pdb|3UH7|B Chain B, Hbi (T72g) Co Bound
pdb|3UI0|A Chain A, Hbi (T72g) Deoxy
pdb|3UI0|B Chain B, Hbi (T72g) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALMTTLFADNQETIGYFKR 53
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 265 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 305
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 272 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 312
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 267 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 307
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 267 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 307
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 268 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 308
>pdb|3UHE|A Chain A, Hbi (M37v,L73i) Co Bound
pdb|3UHE|B Chain B, Hbi (M37v,L73i) Co Bound
pdb|3UHV|A Chain A, Hbi (M37v,L73i) Deoxy
pdb|3UHV|B Chain B, Hbi (M37v,L73i) Deoxy
Length = 146
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALVTTLFADNQETIGYFKR 53
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 42 WKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEEN 82
++++L+ W PK E F E +F F+ Y N
Sbjct: 268 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEHYVHVN 308
>pdb|2GRF|A Chain A, Crystal Structure Of Scapharca Inaequivalvis Hbi, M37v
Mutant In The Absence Of Ligand
pdb|2GRF|B Chain B, Crystal Structure Of Scapharca Inaequivalvis Hbi, M37v
Mutant In The Absence Of Ligand
pdb|2GRH|A Chain A, M37v Mutant Of Scapharca Dimeric Hemoglobin, With Co
Bound
pdb|2GRH|B Chain B, M37v Mutant Of Scapharca Dimeric Hemoglobin, With Co
Bound
pdb|2GRZ|A Chain A, 5ns Photoproduct Of The M37v Mutant Of Scapharca Hbi
pdb|2GRZ|B Chain B, 5ns Photoproduct Of The M37v Mutant Of Scapharca Hbi
Length = 146
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVALVTTLFADNQETIGYFKR 53
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 5 RENIPTVLQTLCEKCTPSQTDK--AVMVIRRLKKDYPE 40
R++IP LCE+C P DK AV++ RR +++ +
Sbjct: 61 RQHIPDTY--LCERCQPRNLDKERAVLLQRRKRENMSD 96
>pdb|2X3G|A Chain A, Crystal Structure Of The Hypothetical Protein Orf119
From Sulfolobus Islandicus Rod-Shaped Virus 1
Length = 119
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 62 KFGDTYKLFREFLRCEYSEENILFWLACEDLKKESN 97
K+GDT K+FR+F Y+ + + ++ K SN
Sbjct: 26 KYGDTEKIFRKFRSYIYNHDKNSHVFSIKETTKNSN 61
>pdb|3UH5|A Chain A, Hbi (L36f) Co Bound
pdb|3UH5|B Chain B, Hbi (L36f) Co Bound
pdb|3UHR|A Chain A, Hbi (L36f) Deoxy
pdb|3UHR|B Chain B, Hbi (L36f) Deoxy
Length = 146
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 21 PSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLR 75
PS D A + +KKD + WK++ D KG F D + F R
Sbjct: 1 PSVYDAAAQLTADVKKDLRDSWKVIGS--DKKGNGVAFMTTLFADNQETIGYFKR 53
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 60 QEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 119
+E+ T F + L S+ + L +A EDL K ++ I EK + L PK
Sbjct: 223 KEQAASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPK 282
Query: 120 EVTQDP 125
+ ++P
Sbjct: 283 TLPEEP 288
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 60 QEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 119
+E+ T F + L S+ + L +A EDL K ++ I EK + L PK
Sbjct: 223 KEQAASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPK 282
Query: 120 EVTQDP 125
+ ++P
Sbjct: 283 TLPEEP 288
>pdb|3CG1|A Chain A, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
pdb|3CG1|B Chain B, Crystal Structure Of P. Furiosus Periplasmic Binding
Protein ModaWTPA WITH BOUND TUNGSTATE
Length = 296
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 69 LFREFLRCEYSEEN-------ILFWLACEDL--KKESNPDVIEEKARFIYEDYISILSPK 119
L RE +R +S+ N L + DL KE ++IEE IY + I +PK
Sbjct: 117 LAREDVRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEENTN-IYSNGTQIYAPK 175
Query: 120 EVTQDP 125
E+T +P
Sbjct: 176 EITVNP 181
>pdb|2M47|A Chain A, Solution Nmr Structure Of The Polyketide_cyc-like Protein
Cgl2372 From Corynebacterium Glutamicum, Northeast
Structural Genomics Consortium Target Cgr160
Length = 163
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 40 EEWKILLEKWD--PKGEYTRKFQEKFGD 65
EE +L E W+ PKG+ R F +KFGD
Sbjct: 99 EEGTVLTESWEFTPKGQ--RFFHDKFGD 124
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 60 QEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 119
+E+ T F + L S+ + L +A EDL K ++ I EK + L PK
Sbjct: 223 KEQAASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPK 282
Query: 120 EVTQDP 125
+ ++P
Sbjct: 283 TLPEEP 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,128,059
Number of Sequences: 62578
Number of extensions: 172813
Number of successful extensions: 670
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 97
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)