Query psy1257
Match_columns 125
No_of_seqs 168 out of 880
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gvs_A Chemosensory protein CS 99.9 1.7E-23 5.9E-28 141.1 6.4 62 2-63 43-104 (109)
2 1k19_A Chemosensory protein CS 99.9 2.4E-23 8.4E-28 140.9 4.9 62 2-63 41-102 (112)
3 2af0_A Regulator of G-protein 99.9 1.1E-22 3.7E-27 142.7 7.8 79 47-125 11-95 (146)
4 2oj4_A RGS3, regulator of G-pr 99.9 1.3E-22 4.5E-27 138.7 7.4 72 54-125 2-79 (127)
5 3c7l_A Regulator of G-protein 99.9 1.5E-22 5.2E-27 140.8 7.3 77 49-125 8-90 (137)
6 2dlv_A RGS18, regulator of G-p 99.9 1.3E-22 4.6E-27 141.1 6.3 77 49-125 5-87 (140)
7 1fqi_A RGS9, regulator of G-pr 99.9 1.4E-22 4.9E-27 142.4 6.4 84 41-125 2-92 (147)
8 2crp_A RGS5, regulator of G-pr 99.9 2E-22 6.9E-27 142.0 7.2 77 49-125 15-97 (150)
9 1zv4_X RGS17, regulator of G-p 99.9 2.4E-22 8.1E-27 143.2 7.2 78 48-125 22-105 (158)
10 2jnu_A RGS14, regulator of G-p 99.9 2.1E-22 7.3E-27 142.5 6.8 76 50-125 2-85 (154)
11 1cmz_A Protein (GAIP (G-alpha 99.9 2.5E-22 8.7E-27 141.6 7.1 77 49-125 10-92 (152)
12 2ihb_B Regulator of G-protein 99.9 4.8E-22 1.6E-26 140.6 8.3 78 48-125 20-103 (153)
13 2ihd_A RGS8, regulator of G-pr 99.9 2.5E-22 8.5E-27 142.6 6.8 76 50-125 26-107 (155)
14 2jm5_A RGS18, regulator of G-p 99.9 2.3E-22 7.8E-27 142.0 6.5 76 50-125 2-83 (151)
15 2ebz_A RGS12, regulator of G-p 99.9 4.5E-22 1.5E-26 141.0 7.8 76 50-125 6-89 (155)
16 2dlr_A RGS10, regulator of G-p 99.9 2.5E-22 8.7E-27 141.3 6.2 77 49-125 5-87 (149)
17 2a72_A Regulator of G-protein 99.9 4.1E-22 1.4E-26 139.9 6.5 76 49-125 3-84 (146)
18 2bv1_A Regulator of G-protein 99.8 6.4E-22 2.2E-26 138.7 5.8 76 49-125 12-93 (145)
19 1agr_E RGS4; GI-alpha-1, hydro 99.8 3.2E-21 1.1E-25 143.0 6.1 77 49-125 49-131 (205)
20 1dk8_A Axin; alpha-helix, PI-h 99.8 2.7E-21 9.2E-26 135.5 5.1 71 55-125 8-89 (147)
21 2pbi_A Regulator of G-protein 99.8 1.2E-20 4.2E-25 152.7 6.1 103 10-125 260-369 (424)
22 3cx8_B RHO guanine nucleotide 98.0 1E-05 3.5E-10 59.3 5.4 60 64-124 33-92 (203)
23 1iap_A Guanine nucleotide exch 97.8 5.4E-05 1.8E-09 55.7 6.3 60 64-124 15-74 (211)
24 3ab3_B RHO guanine nucleotide 97.4 8.4E-05 2.9E-09 55.7 3.0 60 64-124 69-128 (246)
25 2acx_A G protein-coupled recep 96.5 0.0048 1.6E-07 51.3 6.6 56 64-120 61-117 (576)
26 4gou_A EHRGS-rhogef; RGS domai 96.5 0.0058 2E-07 47.3 6.4 58 67-124 26-86 (518)
27 3v5w_A G-protein coupled recep 96.2 0.0046 1.6E-07 52.7 4.6 54 64-117 62-117 (689)
28 3c4z_A Rhodopsin kinase; Ser/T 86.1 2.6 9E-05 34.4 7.5 55 64-119 66-121 (543)
29 2km4_A Regulator of TY1 transp 74.0 2.8 9.6E-05 28.3 3.2 33 2-34 81-113 (142)
30 2k85_A Glucocorticoid receptor 57.2 9.1 0.00031 23.0 2.7 53 23-76 11-65 (69)
31 2zs0_D Extracellular giant hem 49.5 9.1 0.00031 25.6 2.1 13 18-30 2-14 (145)
32 2zs0_A Extracellular giant hem 48.6 10 0.00036 24.9 2.3 12 19-30 2-13 (140)
33 3clj_A Protein NRD1; CTD-inter 44.1 14 0.00048 25.6 2.4 31 4-34 97-127 (157)
34 1yhu_A Hemoglobin A1 chain; gl 43.6 16 0.00054 24.2 2.6 18 18-35 1-18 (145)
35 2zs0_B Extracellular giant hem 42.7 17 0.00057 23.8 2.6 16 19-34 2-17 (142)
36 1yhu_B Giant hemoglobins B cha 42.2 10 0.00034 24.9 1.4 17 18-34 3-19 (144)
37 2o3f_A Putative HTH-type trans 37.5 76 0.0026 20.0 5.5 70 10-79 10-80 (111)
38 1x9f_D Globin C, hemoglobin ch 36.0 9 0.00031 25.1 0.4 17 19-35 2-18 (140)
39 3d9j_A RNA-binding protein 16; 34.7 50 0.0017 22.0 4.0 32 3-35 87-118 (145)
40 3iwf_A Transcription regulator 34.4 87 0.003 19.7 5.4 72 10-81 6-78 (107)
41 4gud_A Imidazole glycerol phos 34.0 12 0.0004 26.1 0.7 20 64-85 191-210 (211)
42 4fu3_A Regulation of nuclear P 32.7 10 0.00034 24.8 0.2 34 3-36 80-113 (135)
43 1sz9_A PCF11 protein; RNA poly 31.0 33 0.0011 23.0 2.6 38 3-40 81-118 (144)
44 3fy4_A 6-4 photolyase; DNA rep 27.9 21 0.0007 29.3 1.3 17 47-63 429-445 (537)
45 1yhu_D Hemoglobin B2 chain; gl 27.6 39 0.0013 22.2 2.5 14 17-30 2-15 (149)
46 2jak_A Serine/threonine-protei 27.4 1.6E+02 0.0054 23.2 6.3 105 9-114 89-207 (392)
47 1x9f_B Erythrocruorin, globin 26.6 40 0.0014 22.0 2.4 18 18-35 3-20 (145)
48 1yhu_C Hemoglobin B1A chain; g 26.0 36 0.0012 22.4 2.0 18 17-34 2-19 (148)
49 2wq7_A RE11660P; lyase-DNA com 25.7 24 0.00081 28.8 1.3 17 47-63 453-469 (543)
50 1u3d_A Cryptochrome 1 apoprote 25.6 18 0.00061 29.2 0.5 17 47-63 424-440 (509)
51 1np7_A DNA photolyase; protein 25.5 17 0.0006 29.1 0.4 17 47-63 419-435 (489)
52 2zs0_C Extracellular giant hem 25.5 19 0.00063 23.8 0.5 14 18-31 3-16 (147)
53 3n54_B Spore germination prote 25.0 9.6 0.00033 28.9 -1.2 45 2-46 274-322 (350)
54 3tvs_A Cryptochrome-1; circadi 24.9 21 0.00072 29.2 0.8 17 47-63 444-460 (538)
55 1lba_A T7 lysozyme; hydrolase( 24.9 55 0.0019 21.7 2.8 23 18-40 90-112 (146)
56 1sct_A Hemoglobin II (carbonmo 24.4 18 0.0006 24.0 0.2 17 19-35 10-27 (150)
57 3c5t_B Exendin-4, exenatide; l 24.2 61 0.0021 16.3 2.2 17 23-39 7-23 (31)
58 1sct_B Hemoglobin II (carbonmo 24.0 21 0.0007 23.6 0.5 11 20-30 13-23 (151)
59 2j07_A Deoxyribodipyrimidine p 22.8 21 0.00073 28.1 0.4 18 46-63 374-391 (420)
60 2e0i_A 432AA long hypothetical 22.8 22 0.00074 28.3 0.5 18 46-63 371-388 (440)
61 2j4d_A Cryptochrome 3, cryptoc 22.6 22 0.00075 28.9 0.5 17 47-63 455-471 (525)
62 3omy_A Protein TRAM; DNA bindi 22.5 30 0.001 19.6 0.9 26 99-125 10-35 (52)
63 1owl_A Photolyase, deoxyribodi 22.5 22 0.00074 28.5 0.4 17 47-63 413-429 (484)
64 1sz9_A PCF11 protein; RNA poly 22.5 1.1E+02 0.0037 20.4 4.0 36 4-39 40-75 (144)
65 4hrt_B Hemoglobin B chain; oxy 22.4 28 0.00096 23.1 0.9 19 10-30 6-24 (152)
66 1dnp_A DNA photolyase; DNA rep 21.6 23 0.0008 28.3 0.5 17 47-63 406-422 (471)
67 2b4j_C PC4 and SFRS1 interacti 21.5 89 0.003 19.9 3.1 17 99-115 66-82 (98)
68 3ism_C CG4930; endonuclease, e 21.2 1.7E+02 0.0057 22.7 5.1 86 1-89 33-130 (359)
69 4flb_A Regulation of nuclear P 21.2 89 0.003 20.0 3.3 30 3-35 82-111 (132)
70 2l63_A GLP-2, glucagon-like pe 20.6 80 0.0027 16.0 2.3 18 23-40 15-32 (33)
71 3c9q_A Uncharacterized protein 20.5 39 0.0013 24.4 1.4 17 77-95 26-42 (205)
72 1vsy_5 Proteasome activator BL 20.3 68 0.0023 28.3 3.2 48 6-53 934-983 (997)
No 1
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=99.89 E-value=1.7e-23 Score=141.08 Aligned_cols=62 Identities=31% Similarity=0.686 Sum_probs=59.8
Q ss_pred hhHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh
Q psy1257 2 SECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 2 ~~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~ 63 (125)
++||++|||||+|+|+||||+||+++++||+||++++|+.|+.|..+|||+++|..++...+
T Consensus 43 k~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~W~~L~~KyDP~g~y~~ky~~~~ 104 (109)
T 2gvs_A 43 KELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYEDRE 104 (109)
T ss_dssp HHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTCTTTHHHHTTT
T ss_pred HHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHHHHHHHHHHCCCchHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998765
No 2
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=99.88 E-value=2.4e-23 Score=140.93 Aligned_cols=62 Identities=32% Similarity=0.646 Sum_probs=59.7
Q ss_pred hhHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh
Q psy1257 2 SECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 2 ~~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~ 63 (125)
++||++|||||+|+|+||||+||+++++|++||++++|+.|+.|..+|||+++|..++...+
T Consensus 41 k~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~W~~L~~KyDP~g~y~~~y~~~~ 102 (112)
T 1k19_A 41 KELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRA 102 (112)
T ss_dssp HHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHHHSCHHHHHHHSSTTTCSSHHHHHHHH
T ss_pred HHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHHHHHHHHHHCCCchHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999887765
No 3
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=99.88 E-value=1.1e-22 Score=142.71 Aligned_cols=79 Identities=43% Similarity=0.738 Sum_probs=74.2
Q ss_pred hcCCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCc
Q psy1257 47 EKWDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 120 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~e 120 (125)
....|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+..++...|+.||++||+++||.+
T Consensus 11 ~~~~~s~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~e 90 (146)
T 2af0_A 11 QSMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKE 90 (146)
T ss_dssp HHTSCCHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSTTCTTC
T ss_pred ccCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCCcc
Confidence 34579999999999999 999999999999999999999999999999998777889999999999999999999
Q ss_pred cCCCC
Q psy1257 121 VTQDP 125 (125)
Q Consensus 121 vNid~ 125 (125)
||||+
T Consensus 91 vNi~~ 95 (146)
T 2af0_A 91 INIDF 95 (146)
T ss_dssp CCCCH
T ss_pred cCcCH
Confidence 99984
No 4
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=138.74 Aligned_cols=72 Identities=43% Similarity=0.710 Sum_probs=67.8
Q ss_pred hhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCC
Q psy1257 54 EYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQDP 125 (125)
Q Consensus 54 ~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNid~ 125 (125)
+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+..++...|+.||++||+++||.+||||+
T Consensus 2 ~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e~~~enl~Fw~~ve~~k~~~~~~~~~~~a~~I~~~yi~~~s~~evni~~ 79 (127)
T 2oj4_A 2 EEALKWGESLEKLLVHKYGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNLDS 79 (127)
T ss_dssp THHHHHTTCHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCH
T ss_pred HHHHHHHhHHHHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCCCCcCccCCH
Confidence 4578999999 99999999999999999999999999999998777788999999999999999999999984
No 5
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=99.87 E-value=1.5e-22 Score=140.81 Aligned_cols=77 Identities=36% Similarity=0.657 Sum_probs=68.3
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
..|+...+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+...+..++...|+.||++||+++||.+||
T Consensus 8 ~~~~~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 87 (137)
T 3c7l_A 8 HGSFSEDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVN 87 (137)
T ss_dssp ------CHHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCC
T ss_pred CCCChHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCCccCC
Confidence 457788899999999 99999999999999999999999999999999887788999999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 88 i~~ 90 (137)
T 3c7l_A 88 IDH 90 (137)
T ss_dssp CCH
T ss_pred CCH
Confidence 984
No 6
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=141.08 Aligned_cols=77 Identities=45% Similarity=0.716 Sum_probs=72.6
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
..|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|+.|++..+..++...|+.||++||+++||.+||
T Consensus 5 ~~~~~~~~~~w~~sl~~iL~~~~~~~~F~~Fl~~e~s~enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evn 84 (140)
T 2dlv_A 5 SSGSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVN 84 (140)
T ss_dssp CCCCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSSTTCCC
T ss_pred CCCCHHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCccccC
Confidence 468889999999999 99999999999999999999999999999998876788999999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 85 i~~ 87 (140)
T 2dlv_A 85 LDF 87 (140)
T ss_dssp CCH
T ss_pred CcH
Confidence 984
No 7
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=99.87 E-value=1.4e-22 Score=142.45 Aligned_cols=84 Identities=30% Similarity=0.459 Sum_probs=72.5
Q ss_pred HHHHHhh-cCCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q psy1257 41 EWKILLE-KWDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYI 113 (125)
Q Consensus 41 ~W~~l~~-k~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi 113 (125)
.|+.... ...|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+..+. .++...|+.||++||
T Consensus 2 ~w~~~~~~~~~p~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k~~~~-~~~~~~a~~Iy~~yi 80 (147)
T 1fqi_A 2 FWDLNAKLVDIPTKMRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQ-SKVKEKAEEIYKLFL 80 (147)
T ss_dssp ------CCCCCCCHHHHHHTTTCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSCG-GGHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHc
Confidence 5765554 4689999999999999 9999999999999999999999999999999764 568899999999999
Q ss_pred CCCCCCccCCCC
Q psy1257 114 SILSPKEVTQDP 125 (125)
Q Consensus 114 ~~~sp~evNid~ 125 (125)
+++||.+||||+
T Consensus 81 ~~~s~~evni~~ 92 (147)
T 1fqi_A 81 APGARRWINIDG 92 (147)
T ss_dssp STTCTTCCCCCH
T ss_pred CCCCCcccCCCH
Confidence 999999999984
No 8
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=141.98 Aligned_cols=77 Identities=38% Similarity=0.677 Sum_probs=72.9
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
.+|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+..++...|+.||++||+++||.+||
T Consensus 15 ~~~s~~~~~~w~~sl~~iL~~~~g~~~F~~Fl~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 94 (150)
T 2crp_A 15 QKTSLDEALQWRDSLDKLLQNNYGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKEVN 94 (150)
T ss_dssp CCCCHHHHTHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCCTTHHHHHHHHHHHHTSSTTCSSCCS
T ss_pred CCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHccCCCCccCC
Confidence 478999999999999 99999999999999999999999999999998876678999999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 95 i~~ 97 (150)
T 2crp_A 95 IDH 97 (150)
T ss_dssp CCH
T ss_pred CCH
Confidence 984
No 9
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=143.21 Aligned_cols=78 Identities=65% Similarity=1.035 Sum_probs=72.7
Q ss_pred cCCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCcc
Q psy1257 48 KWDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEV 121 (125)
Q Consensus 48 k~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~ev 121 (125)
...|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+...+...|+.||++||+++||.+|
T Consensus 22 ~~~~~~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~ev 101 (158)
T 1zv4_X 22 SMNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKEV 101 (158)
T ss_dssp TSSCCHHHHHHHTTCHHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTCCC-CCCC
T ss_pred CCCCCHHHHHHHHhhHHHHhCCHHHHHHHHHHHHHccCHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCCCCcee
Confidence 3578899999999999 9999999999999999999999999999999988778899999999999999999999
Q ss_pred CCCC
Q psy1257 122 TQDP 125 (125)
Q Consensus 122 Nid~ 125 (125)
|||+
T Consensus 102 Ni~~ 105 (158)
T 1zv4_X 102 SLDS 105 (158)
T ss_dssp CCCH
T ss_pred ecCH
Confidence 9984
No 10
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=142.53 Aligned_cols=76 Identities=28% Similarity=0.495 Sum_probs=71.0
Q ss_pred CCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHcCCCCCCcc
Q psy1257 50 DPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESN--PDVIEEKARFIYEDYISILSPKEV 121 (125)
Q Consensus 50 dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~--~~~~~~~a~~Iy~~yi~~~sp~ev 121 (125)
-|+...+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+ ...+...|+.||++||+++||.+|
T Consensus 2 ~p~~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~~~Enl~Fw~~ve~~k~~~~~~~~~~~~~a~~Iy~~yi~~~s~~ev 81 (154)
T 2jnu_A 2 MTEEQPVASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSPV 81 (154)
T ss_dssp CSSCCSGGGGGTCHHHHHHSHHHHHHHHHHTTTSSCTHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTSTTCSSCC
T ss_pred CCchHhHHHHHHhHHHHHCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCccc
Confidence 48889999999999 9999999999999999999999999999999864 457889999999999999999999
Q ss_pred CCCC
Q psy1257 122 TQDP 125 (125)
Q Consensus 122 Nid~ 125 (125)
|||+
T Consensus 82 ni~~ 85 (154)
T 2jnu_A 82 NIDR 85 (154)
T ss_dssp CSCC
T ss_pred CCcH
Confidence 9985
No 11
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=99.86 E-value=2.5e-22 Score=141.64 Aligned_cols=77 Identities=57% Similarity=0.953 Sum_probs=71.5
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
-.|+.+.+.+|..+| |.|+.+|++||++|+|+|||.||++|+.|++..+...+...|+.||++||+++||.+||
T Consensus 10 ~~p~~~~~~~~~~sl~~iL~~p~~~~~F~~Fl~~e~s~Enl~Fw~~ve~~k~~~~~~~~~~~a~~Iy~~yi~~~s~~evn 89 (152)
T 1cmz_A 10 GIPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVS 89 (152)
T ss_dssp --CCHHHHHHHTTCSHHHHSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHTTTCSSSCCCS
T ss_pred CCCCHHHHHHHHhhHHHHHCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCceee
Confidence 368888999999999 99999999999999999999999999999998776788999999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 90 i~~ 92 (152)
T 1cmz_A 90 LDS 92 (152)
T ss_dssp CCS
T ss_pred CCH
Confidence 985
No 12
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=99.86 E-value=4.8e-22 Score=140.59 Aligned_cols=78 Identities=38% Similarity=0.628 Sum_probs=70.5
Q ss_pred cCCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCcc
Q psy1257 48 KWDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEV 121 (125)
Q Consensus 48 k~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~ev 121 (125)
.-.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|+.|+...+...+...|+.||++||+++||.+|
T Consensus 20 ~~~~~~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~ev 99 (153)
T 2ihb_B 20 SSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQV 99 (153)
T ss_dssp -----CHHHHHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSTTCTTCC
T ss_pred CCCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCCCccC
Confidence 3478899999999999 9999999999999999999999999999999988778899999999999999999999
Q ss_pred CCCC
Q psy1257 122 TQDP 125 (125)
Q Consensus 122 Nid~ 125 (125)
|||+
T Consensus 100 Ni~~ 103 (153)
T 2ihb_B 100 NVEG 103 (153)
T ss_dssp CCCC
T ss_pred CCCH
Confidence 9985
No 13
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=99.86 E-value=2.5e-22 Score=142.61 Aligned_cols=76 Identities=36% Similarity=0.670 Sum_probs=71.1
Q ss_pred CCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCC
Q psy1257 50 DPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQ 123 (125)
Q Consensus 50 dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNi 123 (125)
.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+...+..++...|+.||++||+++||.+|||
T Consensus 26 ~~s~~~~~~w~~sl~~iL~dp~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNI 105 (155)
T 2ihd_A 26 RLSTEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNI 105 (155)
T ss_dssp --CHHHHHHTTSCHHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTCTTCCCC
T ss_pred CCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCcCCCccccCC
Confidence 78899999999999 999999999999999999999999999999998777889999999999999999999999
Q ss_pred CC
Q psy1257 124 DP 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 106 ~~ 107 (155)
T 2ihd_A 106 DF 107 (155)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 14
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=99.86 E-value=2.3e-22 Score=141.97 Aligned_cols=76 Identities=46% Similarity=0.724 Sum_probs=72.1
Q ss_pred CCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCC
Q psy1257 50 DPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQ 123 (125)
Q Consensus 50 dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNi 123 (125)
.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+...+..++...|+.||++||+++||.+|||
T Consensus 2 ~~~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi 81 (151)
T 2jm5_A 2 MVSPEEAVKWGESFDKLLSHRDGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNL 81 (151)
T ss_dssp CCCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTTCSSSSSCCCC
T ss_pred CCCHHHHHHHHHhHHHHHCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHccCcchhhcCC
Confidence 47888999999999 999999999999999999999999999999998877889999999999999999999999
Q ss_pred CC
Q psy1257 124 DP 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 82 ~~ 83 (151)
T 2jm5_A 82 DF 83 (151)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 15
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=140.99 Aligned_cols=76 Identities=29% Similarity=0.528 Sum_probs=70.7
Q ss_pred CCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHcCCCCCCcc
Q psy1257 50 DPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKES--NPDVIEEKARFIYEDYISILSPKEV 121 (125)
Q Consensus 50 dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~--~~~~~~~~a~~Iy~~yi~~~sp~ev 121 (125)
.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++.. +..++...|+.||++||+++||.+|
T Consensus 6 ~~~~~~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~~~a~~Iy~~yi~~~s~~ev 85 (155)
T 2ebz_A 6 SGRERRVASWAVSFERLLQDPVGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTPV 85 (155)
T ss_dssp CSSCCCTTHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHSSSSCSSCC
T ss_pred CCcHhHHHHHHHhHHHHHCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 57889999999999 999999999999999999999999999999974 3457889999999999999999999
Q ss_pred CCCC
Q psy1257 122 TQDP 125 (125)
Q Consensus 122 Nid~ 125 (125)
|||+
T Consensus 86 ni~~ 89 (155)
T 2ebz_A 86 NIDS 89 (155)
T ss_dssp SSCG
T ss_pred CCCH
Confidence 9985
No 16
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-22 Score=141.33 Aligned_cols=77 Identities=39% Similarity=0.630 Sum_probs=72.8
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
-.|+.+.+.+|+.+| |.|+.+|++||++|+|.|||.||++|+.|++..+..++...|+.||++||+++||.+||
T Consensus 5 ~~~~~~~~~~w~~sl~~iL~~~~g~~~F~~FL~~e~~~Enl~Fw~~ve~yk~~~~~~~~~~~a~~Iy~~yi~~~s~~evN 84 (149)
T 2dlr_A 5 SSGSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVN 84 (149)
T ss_dssp CCCSSCCHHHHHHCHHHHHHSHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTTSSTTCSSCCC
T ss_pred CCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCcccc
Confidence 358888999999999 99999999999999999999999999999999887788999999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 85 i~~ 87 (149)
T 2dlr_A 85 VEG 87 (149)
T ss_dssp CSC
T ss_pred CCH
Confidence 985
No 17
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=99.86 E-value=4.1e-22 Score=139.86 Aligned_cols=76 Identities=26% Similarity=0.508 Sum_probs=71.0
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
-.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+.... .++...|+.||++||+++||.+||
T Consensus 3 ~~~~~~~~~~w~~sl~~iL~~p~g~~~F~~Fl~~e~~~Enl~Fw~~ve~~k~~~~-~~~~~~a~~Iy~~yi~~~s~~evN 81 (146)
T 2a72_A 3 KEPSQQRVKRWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKKRPI-KEVPSRVQEIWQEFLAPGAPSAIN 81 (146)
T ss_dssp CCCCHHHHHHGGGCHHHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSCG-GGHHHHHHHHHHHHTSTTCTTCCC
T ss_pred CCCCHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHcCCCCcccCC
Confidence 468999999999999 9999999999999999999999999999999865 467899999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 82 i~~ 84 (146)
T 2a72_A 82 LDS 84 (146)
T ss_dssp CCH
T ss_pred CCH
Confidence 984
No 18
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=99.85 E-value=6.4e-22 Score=138.70 Aligned_cols=76 Identities=32% Similarity=0.518 Sum_probs=70.8
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
-.|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++..+. ++...|+.||++||+++||.+||
T Consensus 12 ~~~~~~~~~~~~~sl~~iL~~p~g~~~F~~FL~~e~s~Enl~Fw~~ve~yk~~~~~-~~~~~a~~Iy~~yi~~~s~~evn 90 (145)
T 2bv1_A 12 DVLSAAEVMQWSQSLEKLLANQTGQNVFGSFLKSEFSEENIEFWLACEDYKKTESD-LLPCKAEEIYKAFVHSDAAKQIN 90 (145)
T ss_dssp EEEEHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHTSTTCTTCCC
T ss_pred CCCCHHHHHHHHHhHHHHHCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHCCCCCCcccC
Confidence 358889999999999 99999999999999999999999999999998764 48899999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 91 i~~ 93 (145)
T 2bv1_A 91 IDF 93 (145)
T ss_dssp CCH
T ss_pred cCH
Confidence 984
No 19
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=99.83 E-value=3.2e-21 Score=142.95 Aligned_cols=77 Identities=39% Similarity=0.679 Sum_probs=71.2
Q ss_pred CCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccC
Q psy1257 49 WDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVT 122 (125)
Q Consensus 49 ~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evN 122 (125)
..|+.+.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|+...+..++...|+.||++||+++||.+||
T Consensus 49 ~~~s~~~~~~w~~sle~IL~dp~g~~~F~~FL~~e~s~EnL~Fw~ave~yk~~~~~~~~~~~A~~Iy~~YI~~~Sp~evN 128 (205)
T 1agr_E 49 QRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVN 128 (205)
T ss_dssp --CCHHHHHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHCCCTTTHHHHHHHHHHHHTSTTCTTCCC
T ss_pred CCCCHHHHHHHHhhHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHCCCCCchhhh
Confidence 478999999999999 99999999999999999999999999999998765678899999999999999999999
Q ss_pred CCC
Q psy1257 123 QDP 125 (125)
Q Consensus 123 id~ 125 (125)
||+
T Consensus 129 I~~ 131 (205)
T 1agr_E 129 LDS 131 (205)
T ss_dssp CCH
T ss_pred ccH
Confidence 984
No 20
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=99.83 E-value=2.7e-21 Score=135.46 Aligned_cols=71 Identities=32% Similarity=0.476 Sum_probs=66.2
Q ss_pred hhhhHHhhh------cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHc-CCCCCCccCC
Q psy1257 55 YTRKFQEKF------GDTYKLFREFLRCEYSEENILFWLACEDLKKE----SNPDVIEEKARFIYEDYI-SILSPKEVTQ 123 (125)
Q Consensus 55 ~v~kw~~s~------~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~----~~~~~~~~~a~~Iy~~yi-~~~sp~evNi 123 (125)
.+.+|+.+| |.|+.+|++||++|+|+|||.||++|++|++. .+...+...|+.||++|| .++||.+|||
T Consensus 8 ~~~~w~~sl~~iL~~p~g~~~F~~FL~~e~~~enl~Fw~~ve~~k~~~~~~~~~~~~~~~a~~Iy~~yi~~~~s~~~vni 87 (147)
T 1dk8_A 8 PYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQT 87 (147)
T ss_dssp HHHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHTSCTTSHHHHHS
T ss_pred hHHHHHhCHHHHHCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHhCCccCCCCCCC
Confidence 478999999 99999999999999999999999999999998 455678999999999999 9999999999
Q ss_pred CC
Q psy1257 124 DP 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 88 ~~ 89 (147)
T 1dk8_A 88 KP 89 (147)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 21
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.81 E-value=1.2e-20 Score=152.73 Aligned_cols=103 Identities=27% Similarity=0.425 Sum_probs=85.2
Q ss_pred HHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhh-cCCCCchhhhhHHhhh------cccHHHHHHHHHHhhcHHH
Q psy1257 10 TVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLE-KWDPKGEYTRKFQEKF------GDTYKLFREFLRCEYSEEN 82 (125)
Q Consensus 10 ea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~-k~dP~~~~v~kw~~s~------~~g~~~F~~FL~~e~s~EN 82 (125)
|.+.++|..=+|++.+. +..|..... .-.|+...+.+|+.+| |.|+.+|++||++|||+||
T Consensus 260 DPll~g~~~sNPw~~~d------------~~~w~~~~~~~~~pt~~~v~~w~~sle~LL~dp~g~~~F~~FL~~e~s~En 327 (424)
T 2pbi_A 260 DAIMSGCLPSNPWITDD------------TQFWDLNAKLVEIPTKMRVERWAFNFSELIRDPKGRQSFQYFLKKEFSGEN 327 (424)
T ss_dssp CHHHHCCSSCCHHHHCC------------THHHHHTCTTCSSCBHHHHHHTTTCHHHHHHSHHHHHHHHHHHHHTTCTTH
T ss_pred CCccccCCCCCCCCCCC------------ccceeccCCCCCCCCHHHHhhhhcCHHHHHCCHHHHHHHHHHHHHhCChHH
Confidence 34445555445554443 467875442 5688989999999999 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCCCC
Q psy1257 83 ILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQDP 125 (125)
Q Consensus 83 l~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNid~ 125 (125)
|.||++|++|+..++ .++...|+.||++||+++||.+||||+
T Consensus 328 L~Fwlave~fk~~~~-~~~~~~A~~Iy~~YI~~~Sp~eVNId~ 369 (424)
T 2pbi_A 328 LGFWEACEDLKYGDQ-SKVKEKAEEIYKLFLAPGARRWINIDG 369 (424)
T ss_dssp HHHHHHHHHHHHSCS-SSHHHHHHHHHHHHTSTTCTTCCCCCH
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCCccccCCCH
Confidence 999999999999754 467899999999999999999999984
No 22
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=97.96 E-value=1e-05 Score=59.31 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=56.4
Q ss_pred cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCCC
Q psy1257 64 GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNid 124 (125)
|.-...|..|+-..+.-.-|+|++-.+-|+.... +++++.|..||.+||.++||..|+++
T Consensus 33 PAHLavFL~yvlsq~dP~~LlfyL~~d~yk~~~~-Ke~rk~a~ei~stFL~~~ApL~v~vp 92 (203)
T 3cx8_B 33 PAYLVVFLRYILSQADPGPLLFYLCSEVYQQTNP-KDSRSLGKDIWNIFLEKNAPLRVKIP 92 (203)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHHHHHHHHHTSCT-TTCHHHHHHHHHHHTSTTCTTCCCCC
T ss_pred cHHHHHHHHHHHhcCCchHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHhcCCCCccccCC
Confidence 8889999999999999999999999999999865 57899999999999999999999986
No 23
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Probab=97.77 E-value=5.4e-05 Score=55.68 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCCC
Q psy1257 64 GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNid 124 (125)
|+-...|..|+-..+.---|+|++-.+-|+.+. ..++++.|.+||.+||-++||.-||+|
T Consensus 15 PAHLaVFL~yV~sq~DPspLLfYL~tdlYk~~~-~Ke~rk~~~Ei~stFL~~~ApL~v~v~ 74 (211)
T 1iap_A 15 PAHLMALLQHVALQFEPGPLLCCLHADMLGSLG-PKEAKKAFLDFYHSFLEKTAVLRVPVP 74 (211)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHTSTTCTTCCCCC
T ss_pred cHHHHHHHHHHHHcCCchhhHHHHHHHHHhccC-hHHHHHHHHHHHHHHhCCCCCccccCC
Confidence 777899999999999999999999999999886 468999999999999999999999986
No 24
>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*
Probab=97.40 E-value=8.4e-05 Score=55.73 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHHhhcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCccCCC
Q psy1257 64 GDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~evNid 124 (125)
|+-...|..|+-..+.---|+|++-.+-|+.... +++++.|.+||.+||-++||.-||+|
T Consensus 69 PAHLaVFL~yV~sq~DPspLLfYL~tdlYk~~~~-Ke~Rk~a~Ei~stFL~~~ApL~v~v~ 128 (246)
T 3ab3_B 69 PAHLMALLQHVALQFEPGPLLCCLHADMLGSLGP-KEAKKAFLDFYHSFLEKTAVLRVPVP 128 (246)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHHHHHHHHC--------CCTTHHHHHHTTSTTCTTCCCCC
T ss_pred chHHHHHHHHHHhcCCchhhHHHHHHHHHhccCh-HHHHHHHHHHHHHHcCCCCCccccCC
Confidence 8889999999999999999999999999999875 57899999999999999999999987
No 25
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=96.53 E-value=0.0048 Score=51.33 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHh-hcHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCCc
Q psy1257 64 GDTYKLFREFLRCE-YSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKE 120 (125)
Q Consensus 64 ~~g~~~F~~FL~~e-~s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~e 120 (125)
|.|+.+|++||.+. --..-+.||.++++|....+ +++...|+.|+++|+.+.|+..
T Consensus 61 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (576)
T 2acx_A 61 PIGRLLFREFCATRPELSRCVAFLDGVAEYEVTPD-DKRKACGRNLTQNFLSHTGPDL 117 (576)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTSCT-TTHHHHHHHHHHHHSCSSSCCS
T ss_pred chhHHHHHHHHhcCcchhHHHHHHHHHHhhhcccc-hhHHHHHHHHHHHhcCcccccc
Confidence 99999999999966 23334589999999999766 4678999999999999998763
No 26
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=96.51 E-value=0.0058 Score=47.35 Aligned_cols=58 Identities=28% Similarity=0.363 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHHcCCCCCCccCCC
Q psy1257 67 YKLFREFLRCEYSEENILFWLACEDLKKESN---PDVIEEKARFIYEDYISILSPKEVTQD 124 (125)
Q Consensus 67 ~~~F~~FL~~e~s~ENl~Fw~a~e~~k~~~~---~~~~~~~a~~Iy~~yi~~~sp~evNid 124 (125)
..+.+-||..|-|+|||+|...+--|...-+ ...+.+...-|-+.|+.-+|.++||++
T Consensus 26 krllrcylsderseenldflesvglyesqfdkltpkvrlealnfikdqfldrnserqvnls 86 (518)
T 4gou_A 26 KRLLRCYLSDERSEENLDFLESVGLYESQFDKLTPKVRLEALNFIKDQFLDRNSERQVNLS 86 (518)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHcccccchhhhhHHHhccchHhhhhhcCchhhHHHHHhHHHHhhcccchhhcchh
Confidence 4677889999999999999999887765432 234456677899999999999999986
No 27
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=96.18 E-value=0.0046 Score=52.68 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHhh--cHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCC
Q psy1257 64 GDTYKLFREFLRCEY--SEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILS 117 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~--s~ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~s 117 (125)
|.|+.+|+.||...- --.=+.||.+++.|....+.+.+...++.||++||.+.+
T Consensus 62 ~ig~~~f~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~~~i~~~~~~~~~ 117 (689)
T 3v5w_A 62 KLGYLLFRDFCLNHLEEARPLVEFYEEIKKYEKLETEEERVARSREIFDSYIMKEL 117 (689)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHTSHHHHHH
T ss_pred cHHHHHHHHHhcCcchhhhHHHHHHHHHHhhhccCchhhHHHHHHHHHHHhcchhh
Confidence 899999999976543 333589999999999888878889999999999998654
No 28
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=86.06 E-value=2.6 Score=34.44 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHhhcH-HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCC
Q psy1257 64 GDTYKLFREFLRCEYSE-ENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 119 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~s~-ENl~Fw~a~e~~k~~~~~~~~~~~a~~Iy~~yi~~~sp~ 119 (125)
|.|..+|..||.+.+.- .-..||-.++.|....+ ......|+.|++.|+..++..
T Consensus 66 ~ig~~~~~~f~~t~~~~~~~~~~~~~i~e~~~~~~-~~~~~~~~~l~~~~~~~~~~d 121 (543)
T 3c4z_A 66 PIGKRLFQQFLRTHEQHGPALQLWKDIEDYDTADD-ALRPQKAQALRAAYLEPQAQL 121 (543)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTSCT-TTHHHHHHHHHHHHTSTTCTT
T ss_pred cccHHHHHHHHhcCCchhHHHHHHhhhhhhccCch-hhHHHHHHHHHHHhhCchhhh
Confidence 67999999999988432 22479999999997654 456888999999999999865
No 29
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=74.02 E-value=2.8 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=28.5
Q ss_pred hhHHhhhhHHHHhcCccCCHHHHhHHHHHHHHH
Q psy1257 2 SECRENIPTVLQTLCEKCTPSQTDKAVMVIRRL 34 (125)
Q Consensus 2 ~~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l 34 (125)
+.|...||+++...+..+.+..++.+.+|++-.
T Consensus 81 ~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 81 DSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp HHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468889999999999888999999999888654
No 30
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=57.16 E-value=9.1 Score=23.05 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.9
Q ss_pred HHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh--cccHHHHHHHHHH
Q psy1257 23 QTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF--GDTYKLFREFLRC 76 (125)
Q Consensus 23 Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~--~~g~~~F~~FL~~ 76 (125)
-++....+|+...+++-..|.....+.....++. .|-.=+ ..+..+|+.+..+
T Consensus 11 atd~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~-~yv~L~G~~kaqrlF~rHi~k 65 (69)
T 2k85_A 11 AKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQ-DYVYLEGTQKAKKLFLQHIHR 65 (69)
T ss_dssp HHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHH-HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHH-HHHHHhChHHHHHHHHHHHHH
Confidence 3577888999999999999998877665554443 222222 7788899887654
No 31
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=49.54 E-value=9.1 Score=25.61 Aligned_cols=13 Identities=8% Similarity=0.312 Sum_probs=11.6
Q ss_pred cCCHHHHhHHHHH
Q psy1257 18 KCTPSQTDKAVMV 30 (125)
Q Consensus 18 kCt~~Qk~~~~kv 30 (125)
-||+.|+..++..
T Consensus 2 ~cs~~e~~~V~~s 14 (145)
T 2zs0_D 2 CCSRGDAEVVISE 14 (145)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4999999999876
No 32
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=48.60 E-value=10 Score=24.87 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=11.0
Q ss_pred CCHHHHhHHHHH
Q psy1257 19 CTPSQTDKAVMV 30 (125)
Q Consensus 19 Ct~~Qk~~~~kv 30 (125)
||+.|+..++..
T Consensus 2 cs~~~~~~v~~s 13 (140)
T 2zs0_A 2 CNRLEQILVKTQ 13 (140)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999999876
No 33
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=44.15 E-value=14 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHhhhhHHHHhcCccCCHHHHhHHHHHHHHH
Q psy1257 4 CRENIPTVLQTLCEKCTPSQTDKAVMVIRRL 34 (125)
Q Consensus 4 ~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l 34 (125)
+.+.+|..+...=..|.+.||.+++++++-.
T Consensus 97 ~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW 127 (157)
T 3clj_A 97 LGEVIQELLSDAIAKSNQDHKEKIRMLLDIW 127 (157)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666655555567899999999987543
No 34
>1yhu_A Hemoglobin A1 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=43.64 E-value=16 Score=24.18 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=13.4
Q ss_pred cCCHHHHhHHHHHHHHHH
Q psy1257 18 KCTPSQTDKAVMVIRRLK 35 (125)
Q Consensus 18 kCt~~Qk~~~~kvi~~l~ 35 (125)
-||+.|+..++....-+.
T Consensus 1 ~cs~~~~~~V~~sw~~v~ 18 (145)
T 1yhu_A 1 ACAMLERAKVKDEWAKAY 18 (145)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 399999999987744443
No 35
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=42.69 E-value=17 Score=23.84 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=12.7
Q ss_pred CCHHHHhHHHHHHHHH
Q psy1257 19 CTPSQTDKAVMVIRRL 34 (125)
Q Consensus 19 Ct~~Qk~~~~kvi~~l 34 (125)
||+.|+..++....-+
T Consensus 2 cs~~~~~~v~~sw~~v 17 (142)
T 2zs0_B 2 CTSLNRLLVKRQWAEA 17 (142)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998774433
No 36
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=42.16 E-value=10 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=12.9
Q ss_pred cCCHHHHhHHHHHHHHH
Q psy1257 18 KCTPSQTDKAVMVIRRL 34 (125)
Q Consensus 18 kCt~~Qk~~~~kvi~~l 34 (125)
-||+.|+..++....-+
T Consensus 3 ~~s~~~~~~v~~sw~~v 19 (144)
T 1yhu_B 3 VCGPLQRLKVKRQWAEA 19 (144)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 49999999998763333
No 37
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=37.50 E-value=76 Score=19.98 Aligned_cols=70 Identities=6% Similarity=0.066 Sum_probs=45.4
Q ss_pred HHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh-cccHHHHHHHHHHhhc
Q psy1257 10 TVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF-GDTYKLFREFLRCEYS 79 (125)
Q Consensus 10 ea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~-~~g~~~F~~FL~~e~s 79 (125)
+-|+..-..-|+.+++.++-++.+...------..+...-..+..-+.++...+ =.|...|+..|..+..
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~~~~~ 80 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVAGDLA 80 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345555556777777666444332221111112455566777888899999999 8899999999988764
No 38
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=36.04 E-value=9 Score=25.12 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=13.1
Q ss_pred CCHHHHhHHHHHHHHHH
Q psy1257 19 CTPSQTDKAVMVIRRLK 35 (125)
Q Consensus 19 Ct~~Qk~~~~kvi~~l~ 35 (125)
||+.|+..++....-+.
T Consensus 2 cs~~~~~~V~~sw~~v~ 18 (140)
T 1x9f_D 2 CLVTESLKVKLQWASAF 18 (140)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999987744443
No 39
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=34.65 E-value=50 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.0
Q ss_pred hHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHH
Q psy1257 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLK 35 (125)
Q Consensus 3 ~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~ 35 (125)
.|-..||+++.... +|.+.+|..+.++++-..
T Consensus 87 ~F~~~L~~~f~~~~-~~~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 87 RFSNNIISTFQNLY-RCPGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp HHHHHHHHHHHHHT-SSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhc
Confidence 46678899987555 677999999999876554
No 40
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=34.42 E-value=87 Score=19.70 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=49.1
Q ss_pred HHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh-cccHHHHHHHHHHhhcHH
Q psy1257 10 TVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF-GDTYKLFREFLRCEYSEE 81 (125)
Q Consensus 10 ea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~-~~g~~~F~~FL~~e~s~E 81 (125)
+-|+..-..-|+.+++.++-++.+...----.-..+...-..+..-+.++...+ =.|...|+..|..+....
T Consensus 6 ~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~~~~~~~ 78 (107)
T 3iwf_A 6 YKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSKFLPKE 78 (107)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHTTSCCB
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 445555666778777776555443332222223556666677788888999999 789999999999887654
No 41
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=33.96 E-value=12 Score=26.06 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHhhcHHHHHH
Q psy1257 64 GDTYKLFREFLRCEYSEENILF 85 (125)
Q Consensus 64 ~~g~~~F~~FL~~e~s~ENl~F 85 (125)
+.|..+|+.|| +.+.||+.|
T Consensus 191 ~~G~~ll~nFl--~~~ge~~~~ 210 (211)
T 4gud_A 191 KAGARLIQNFL--ELRGENLYF 210 (211)
T ss_dssp HHHHHHHHHHH--HC-------
T ss_pred ccHHHHHHHHH--HHhcccccc
Confidence 56889999999 579999866
No 42
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=32.68 E-value=10 Score=24.83 Aligned_cols=34 Identities=3% Similarity=0.059 Sum_probs=25.7
Q ss_pred hHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHh
Q psy1257 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKK 36 (125)
Q Consensus 3 ~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~ 36 (125)
.|...||+++......+.+.+++.+.+|++...+
T Consensus 80 ~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 80 EFESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 4667888888887777778888888888766554
No 43
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=31.00 E-value=33 Score=23.01 Aligned_cols=38 Identities=5% Similarity=-0.016 Sum_probs=29.5
Q ss_pred hHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHhhChh
Q psy1257 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPE 40 (125)
Q Consensus 3 ~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~ 40 (125)
.|-..||+++...-..|.+.+|..+.++++-..+..|.
T Consensus 81 ~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~ 118 (144)
T 1sz9_A 81 YFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDT 118 (144)
T ss_dssp HHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccC
Confidence 45677888888887788899999998888776666444
No 44
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=27.90 E-value=21 Score=29.31 Aligned_cols=17 Identities=41% Similarity=0.917 Sum_probs=15.0
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|+|+++|--.|
T Consensus 429 ~kfDp~G~yIr~wvPEL 445 (537)
T 3fy4_A 429 KKYDPDGKYIRHFLPVL 445 (537)
T ss_dssp GGTCTTCHHHHHHCGGG
T ss_pred HHhCCCchHHHHhCHhh
Confidence 47999999999997776
No 45
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=27.64 E-value=39 Score=22.20 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=11.9
Q ss_pred ccCCHHHHhHHHHH
Q psy1257 17 EKCTPSQTDKAVMV 30 (125)
Q Consensus 17 ~kCt~~Qk~~~~kv 30 (125)
+-||+.|+..++..
T Consensus 2 ~~~s~~~~~~v~~s 15 (149)
T 1yhu_D 2 ASCTTEDRREMQLM 15 (149)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 35999999999876
No 46
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=27.42 E-value=1.6e+02 Score=23.24 Aligned_cols=105 Identities=14% Similarity=0.264 Sum_probs=46.8
Q ss_pred hHHHHhcCccCCHHH-HhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhh---hHHhhhcccHHHHHHHHHH-hhcHH--
Q psy1257 9 PTVLQTLCEKCTPSQ-TDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTR---KFQEKFGDTYKLFREFLRC-EYSEE-- 81 (125)
Q Consensus 9 pea~~~~C~kCt~~Q-k~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~---kw~~s~~~g~~~F~~FL~~-e~s~E-- 81 (125)
-+.+.+...+-|+.- .+.++.+-..+-..-|...+.....|||+..... .|-. +......|..|+.. ++...
T Consensus 89 ~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpH-LqlVYe~llrfv~s~~f~~~~~ 167 (392)
T 2jak_A 89 VEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPH-LQLVYEFFLRFLESPDFQPNIA 167 (392)
T ss_dssp HHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC---------------CCCCTTHHH-HHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccccCCccccccccccCChh-HHHHHHHHHHHHHccCCChhhh
Confidence 345555655666433 4455555556666666655443345676554322 3421 14455677777764 44332
Q ss_pred ----HHHHHHHHHHhhcCCCHH---HHHHHHHHHHHHHcC
Q psy1257 82 ----NILFWLACEDLKKESNPD---VIEEKARFIYEDYIS 114 (125)
Q Consensus 82 ----Nl~Fw~a~e~~k~~~~~~---~~~~~a~~Iy~~yi~ 114 (125)
+-.|....=..=..+|.. .+...-++||.+|+.
T Consensus 168 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~ 207 (392)
T 2jak_A 168 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG 207 (392)
T ss_dssp TTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 234555433333344433 335666777777654
No 47
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=26.62 E-value=40 Score=22.03 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=13.6
Q ss_pred cCCHHHHhHHHHHHHHHH
Q psy1257 18 KCTPSQTDKAVMVIRRLK 35 (125)
Q Consensus 18 kCt~~Qk~~~~kvi~~l~ 35 (125)
-||+.|+..++....-+.
T Consensus 3 ~~s~~~~~~V~~sw~~v~ 20 (145)
T 1x9f_B 3 QCGVLEGLKVKSEWGRAY 20 (145)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 499999999987744443
No 48
>1yhu_C Hemoglobin B1A chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=26.01 E-value=36 Score=22.39 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=13.1
Q ss_pred ccCCHHHHhHHHHHHHHH
Q psy1257 17 EKCTPSQTDKAVMVIRRL 34 (125)
Q Consensus 17 ~kCt~~Qk~~~~kvi~~l 34 (125)
+.||+.|+..++....-+
T Consensus 2 ~~ls~~~~~~v~~sw~~v 19 (148)
T 1yhu_C 2 ANCADAAAAIVQAQWEDV 19 (148)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 468999999988763333
No 49
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=25.75 E-value=24 Score=28.79 Aligned_cols=17 Identities=41% Similarity=0.845 Sum_probs=15.2
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|+|+++|.-.|
T Consensus 453 ~kfDp~g~yIr~wvPEL 469 (543)
T 2wq7_A 453 KKTDPQGHYIRKYVPEL 469 (543)
T ss_dssp GGTCTTCHHHHHHSGGG
T ss_pred hhcCCCchhHHHhCHHh
Confidence 58999999999998776
No 50
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=25.59 E-value=18 Score=29.21 Aligned_cols=17 Identities=41% Similarity=0.927 Sum_probs=14.9
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|.|+++|--.|
T Consensus 424 ~kfDp~G~yIrrwvPEL 440 (509)
T 1u3d_A 424 YKFDPNGEYVRRWLPEL 440 (509)
T ss_dssp HHHCTTSHHHHHHCGGG
T ss_pred HhcCCCchhHHHhCHHh
Confidence 47899999999998776
No 51
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=25.54 E-value=17 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.864 Sum_probs=15.2
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|+|+++|.-.+
T Consensus 419 ~kfDp~g~yIr~wvPeL 435 (489)
T 1np7_A 419 QQYDPQGTYLRHWLPEL 435 (489)
T ss_dssp HHHSTTSHHHHHHCGGG
T ss_pred hhcCCCCccHHHhCHHh
Confidence 58999999999998776
No 52
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=25.53 E-value=19 Score=23.82 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=11.8
Q ss_pred cCCHHHHhHHHHHH
Q psy1257 18 KCTPSQTDKAVMVI 31 (125)
Q Consensus 18 kCt~~Qk~~~~kvi 31 (125)
-||+.|+..++...
T Consensus 3 ~~s~~~~~~v~~sw 16 (147)
T 2zs0_C 3 CCSSEDRANVMHNW 16 (147)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 49999999998763
No 53
>3n54_B Spore germination protein B3; A novel fold, lipid binding protein; 2.30A {Bacillus subtilis subsp}
Probab=24.98 E-value=9.6 Score=28.92 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=29.6
Q ss_pred hhHHhhhhHHHHhcCccCCHH-HHh-HHH--HHHHHHHhhChhHHHHHh
Q psy1257 2 SECRENIPTVLQTLCEKCTPS-QTD-KAV--MVIRRLKKDYPEEWKILL 46 (125)
Q Consensus 2 ~~~k~~lpea~~~~C~kCt~~-Qk~-~~~--kvi~~l~~~~P~~W~~l~ 46 (125)
++|.+.+-+.|+..|.+--.+ |++ +++ -+-.+++.++|..|+.+.
T Consensus 274 ~~le~~~~~~i~~~~~~~i~k~Q~~~~~D~~gfG~~~~~~~p~~Wk~~~ 322 (350)
T 3n54_B 274 HRLENIFEKKLERDVKQVMDKLQHEYKTDPVFLSDHIRIQHPDYWNKVK 322 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHCHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHChHHHHHHh
Confidence 456666777777777665433 542 332 566778888999998654
No 54
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=24.93 E-value=21 Score=29.23 Aligned_cols=17 Identities=24% Similarity=0.788 Sum_probs=15.3
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|+|+++|--.|
T Consensus 444 ~kfDp~G~YIrrwvPEL 460 (538)
T 3tvs_A 444 KRLDPDGTYIKQYVPEL 460 (538)
T ss_dssp HHSCTTCTTGGGTCGGG
T ss_pred HHhCCCcchHHHhChhh
Confidence 58999999999998777
No 55
>1lba_A T7 lysozyme; hydrolase(acting on linear amides); 2.20A {Enterobacteria phage T7} SCOP: d.118.1.1 PDB: 1aro_L
Probab=24.91 E-value=55 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred cCCHHHHhHHHHHHHHHHhhChh
Q psy1257 18 KCTPSQTDKAVMVIRRLKKDYPE 40 (125)
Q Consensus 18 kCt~~Qk~~~~kvi~~l~~~~P~ 40 (125)
.=|+.|.+.+..++.+|...+|.
T Consensus 90 ~~t~aq~~al~~Li~~l~~~yp~ 112 (146)
T 1lba_A 90 NFTPAQMQSLRSLLVTLLAKYEG 112 (146)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHHHHHHHHHCCC
Confidence 35789999999999999999985
No 56
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=24.41 E-value=18 Score=23.98 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.3
Q ss_pred C-CHHHHhHHHHHHHHHH
Q psy1257 19 C-TPSQTDKAVMVIRRLK 35 (125)
Q Consensus 19 C-t~~Qk~~~~kvi~~l~ 35 (125)
| |+.|+..++....-+.
T Consensus 10 c~s~~~~~~v~~sw~~v~ 27 (150)
T 1sct_A 10 CGSEAIKANLRRSWGVLS 27 (150)
T ss_dssp HTCHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 6 8999998887644443
No 57
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=24.23 E-value=61 Score=16.32 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHhhCh
Q psy1257 23 QTDKAVMVIRRLKKDYP 39 (125)
Q Consensus 23 Qk~~~~kvi~~l~~~~P 39 (125)
+.+.++.+|.||++-.+
T Consensus 7 e~~aakdFv~WL~ngk~ 23 (31)
T 3c5t_B 7 EEEAVRLFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 45778899999986553
No 58
>1sct_B Hemoglobin II (carbonmonoxy) (beta chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=23.96 E-value=21 Score=23.62 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=8.3
Q ss_pred CHHHHhHHHHH
Q psy1257 20 TPSQTDKAVMV 30 (125)
Q Consensus 20 t~~Qk~~~~kv 30 (125)
|+.|+..++..
T Consensus 13 t~~~~~~v~~s 23 (151)
T 1sct_B 13 NADQKDLLRMS 23 (151)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888777665
No 59
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=22.77 E-value=21 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.722 Sum_probs=15.6
Q ss_pred hhcCCCCchhhhhHHhhh
Q psy1257 46 LEKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 46 ~~k~dP~~~~v~kw~~s~ 63 (125)
..+|||+|+|+++|.-.+
T Consensus 374 ~~kfDp~g~yir~w~pel 391 (420)
T 2j07_A 374 GERHDPEGRWLKRWAPEY 391 (420)
T ss_dssp HHHHSTTSHHHHHHCTTC
T ss_pred HHHhCCCchhHHHhChhh
Confidence 358999999999998776
No 60
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=22.77 E-value=22 Score=28.31 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=15.8
Q ss_pred hhcCCCCchhhhhHHhhh
Q psy1257 46 LEKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 46 ~~k~dP~~~~v~kw~~s~ 63 (125)
..+|||+|+|+++|.-.+
T Consensus 371 ~~kfDp~g~yIr~wvPeL 388 (440)
T 2e0i_A 371 QEKFDPEAKFIKEWVEEL 388 (440)
T ss_dssp HHHHCTTCHHHHHHCGGG
T ss_pred HHHhCCCcHhHHHhCHHh
Confidence 358999999999998777
No 61
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=22.61 E-value=22 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.812 Sum_probs=15.2
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|.|+++|--.|
T Consensus 455 kk~Dp~G~YIrrwvPEL 471 (525)
T 2j4d_A 455 QNYDPEGEYVAFWLQQL 471 (525)
T ss_dssp HHHCTTCHHHHHHSGGG
T ss_pred hhcCCCchhHHHhChhh
Confidence 57999999999998776
No 62
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=22.54 E-value=30 Score=19.55 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccCCCC
Q psy1257 99 DVIEEKARFIYEDYISILSPKEVTQDP 125 (125)
Q Consensus 99 ~~~~~~a~~Iy~~yi~~~sp~evNid~ 125 (125)
.++.+..+.|-+.=++.|| .+||.+|
T Consensus 10 ~~v~~~I~~iVe~r~qeGA-~dvs~Ss 35 (52)
T 3omy_A 10 NNVYEQITDLVTIRKQEGI-EEASLSN 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCc-ccccHHH
Confidence 4678889999999999999 9998764
No 63
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=22.52 E-value=22 Score=28.54 Aligned_cols=17 Identities=18% Similarity=0.604 Sum_probs=15.4
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|+|+++|.-.+
T Consensus 413 ~kfDp~g~yIr~wvPeL 429 (484)
T 1owl_A 413 KKFDATATYIKRWLPEL 429 (484)
T ss_dssp HHHSTTCHHHHHHCGGG
T ss_pred hhcCCCchhHHHhChhh
Confidence 58999999999998877
No 64
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.50 E-value=1.1e+02 Score=20.36 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHhhCh
Q psy1257 4 CRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYP 39 (125)
Q Consensus 4 ~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P 39 (125)
.-+.|-+++.+.+.+|.|.||=.+-=|++.+.+|..
T Consensus 40 ~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g 75 (144)
T 1sz9_A 40 CAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVG 75 (144)
T ss_dssp GHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhcc
Confidence 346677889999999999999888777777777754
No 65
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=22.37 E-value=28 Score=23.08 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHhcCccCCHHHHhHHHHH
Q psy1257 10 TVLQTLCEKCTPSQTDKAVMV 30 (125)
Q Consensus 10 ea~~~~C~kCt~~Qk~~~~kv 30 (125)
+|+...| ||+.|+..++..
T Consensus 6 ~~~~~~~--ls~~~~~~I~~s 24 (152)
T 4hrt_B 6 ELANAVV--SNADQKDLLRMS 24 (152)
T ss_dssp HHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHhcC--CCHHHHHHHHHH
Confidence 4444444 799999998776
No 66
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=21.61 E-value=23 Score=28.29 Aligned_cols=17 Identities=35% Similarity=0.800 Sum_probs=15.3
Q ss_pred hcCCCCchhhhhHHhhh
Q psy1257 47 EKWDPKGEYTRKFQEKF 63 (125)
Q Consensus 47 ~k~dP~~~~v~kw~~s~ 63 (125)
.+|||+|.|+++|.-.|
T Consensus 406 ~kfDp~G~YIrrwvPeL 422 (471)
T 1dnp_A 406 EKFDHEGEFIRQWLPEL 422 (471)
T ss_dssp HHHTTTCHHHHHHCGGG
T ss_pred HhcCCCchhHHHhChhh
Confidence 57899999999998877
No 67
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=21.47 E-value=89 Score=19.85 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy1257 99 DVIEEKARFIYEDYISI 115 (125)
Q Consensus 99 ~~~~~~a~~Iy~~yi~~ 115 (125)
..+++.|..||+.|-+.
T Consensus 66 q~Ir~kA~~iY~kfK~~ 82 (98)
T 2b4j_C 66 QVIMEKSTMLYNKFKNM 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67899999999999654
No 68
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=21.24 E-value=1.7e+02 Score=22.74 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred ChhHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHHhhChhHHHHHhhcCCCCchhhhhHHhhh-----------cccHHH
Q psy1257 1 MSECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKF-----------GDTYKL 69 (125)
Q Consensus 1 ~~~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~~~v~kw~~s~-----------~~g~~~ 69 (125)
+.+++.+|--.+.+.---=....+.+.+++....+. -.|+.|...--|..+...+-++-+ |-..+.
T Consensus 33 aeDYk~LL~~~v~~~~ivnd~~~~~~Fq~IaaqaR~---VIw~LLF~~~~~~~e~~eKa~ELL~eYR~da~Fy~P~eYNE 109 (359)
T 3ism_C 33 VKDYQKLIETRVQVDEIVDDDVTKENFDRTAAAARD---VIWRLLFDEAGTSQSNTEKASQLLEEYRGDACFYDPTPYNE 109 (359)
T ss_dssp HHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHH---HHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHH---HHHHHHhcCCCCchhhHHHHHHHHHHHHhccccCCCccHHH
Q ss_pred HHHHHHHhhcHHHH-HHHHHH
Q psy1257 70 FREFLRCEYSEENI-LFWLAC 89 (125)
Q Consensus 70 F~~FL~~e~s~ENl-~Fw~a~ 89 (125)
|-.=|++|....|+ .||..+
T Consensus 110 WIvkLRdelLkR~lleFW~dv 130 (359)
T 3ism_C 110 WIVKLRDEVLKKELLDFWRDV 130 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 69
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=21.16 E-value=89 Score=20.02 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=21.0
Q ss_pred hHHhhhhHHHHhcCccCCHHHHhHHHHHHHHHH
Q psy1257 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLK 35 (125)
Q Consensus 3 ~~k~~lpea~~~~C~kCt~~Qk~~~~kvi~~l~ 35 (125)
.|...||+++...| .|..++.+.+|++-..
T Consensus 82 ~f~~~l~~~~~~~~---~~~~~~kl~~ll~iW~ 111 (132)
T 4flb_A 82 SFADVLPEAAALVK---DPSVSKSVERIFKIWE 111 (132)
T ss_dssp HHHTTHHHHHHTTC---STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CHHHHHHHHHHHHHhc
Confidence 46678888887664 5677777777776544
No 70
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=20.57 E-value=80 Score=16.05 Aligned_cols=18 Identities=17% Similarity=-0.075 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHhhChh
Q psy1257 23 QTDKAVMVIRRLKKDYPE 40 (125)
Q Consensus 23 Qk~~~~kvi~~l~~~~P~ 40 (125)
+...+++++.||+..+|.
T Consensus 15 ~~~aak~fl~wL~~~k~~ 32 (33)
T 2l63_A 15 DNLAARDFINWLIQTKIT 32 (33)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 456788999999887664
No 71
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=20.47 E-value=39 Score=24.43 Aligned_cols=17 Identities=47% Similarity=0.968 Sum_probs=13.4
Q ss_pred hhcHHHHHHHHHHHHhhcC
Q psy1257 77 EYSEENILFWLACEDLKKE 95 (125)
Q Consensus 77 e~s~ENl~Fw~a~e~~k~~ 95 (125)
=|||||+ |.-|+.++..
T Consensus 26 cYCEENV--wkLce~~~~~ 42 (205)
T 3c9q_A 26 CYCEENV--WKLCEYIKNH 42 (205)
T ss_dssp TCHHHHH--HHHHHHHHHS
T ss_pred cccHHHH--HHHHHHHHhc
Confidence 4799999 7778877764
No 72
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=20.29 E-value=68 Score=28.31 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=39.4
Q ss_pred hhhhHHHHhcCccCCHH--HHhHHHHHHHHHHhhChhHHHHHhhcCCCCc
Q psy1257 6 ENIPTVLQTLCEKCTPS--QTDKAVMVIRRLKKDYPEEWKILLEKWDPKG 53 (125)
Q Consensus 6 ~~lpea~~~~C~kCt~~--Qk~~~~kvi~~l~~~~P~~W~~l~~k~dP~~ 53 (125)
..+|++|.+-|...+.. -+..+++.+.-++..|-|.|+.-..+|..+.
T Consensus 934 ~w~P~~l~~La~~~~~~~~i~~tvk~tlseFkrTH~D~W~~~k~~Ft~eq 983 (997)
T 1vsy_5 934 PWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRADTWKFDRASFNTEE 983 (997)
T ss_dssp THHHHHHHHHHTTSSSCSSHHHHTHHHHHHHHHHTSTTHHHHGGGCCSST
T ss_pred cccHHHHHHHHHHhCCCCchHHHHHHHHHHHHhccchhHHHHHHhcCHHH
Confidence 46899999998887765 4588889999999999999998777776653
Done!