RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1257
(125 letters)
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein,
structural genomics, structura genomics consortium, SGC,
signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B*
2bt2_A
Length = 155
Score = 67.3 bits (164), Expect = 2e-15
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
FR FL+ E+SEEN+ FWLACE+ KK + + KA I+E+++ + +P+EV D
Sbjct: 47 YGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNID 106
Query: 125 P 125
Sbjct: 107 F 107
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 149
Score = 66.9 bits (163), Expect = 2e-15
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +V +
Sbjct: 27 EGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVE 86
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G
protein, signaling protein regulation; NMR {Homo
sapiens} SCOP: a.91.1.1
Length = 152
Score = 66.2 bits (161), Expect = 4e-15
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+FR FLR EYSEEN+LFWLACE+LK E+N V++EKAR IYEDY+SILSPKEV+ D
Sbjct: 32 AGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLD 91
Query: 125 P 125
Sbjct: 92 S 92
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human
RGS17(Z2), regulator of G-protein signali opioid
receptor interacting protein; 2.40A {Homo sapiens}
Length = 158
Score = 65.8 bits (160), Expect = 6e-15
Identities = 48/60 (80%), Positives = 50/60 (83%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
LFREFLR EYSEEN+LFWLACEDLKKE N VIEEKAR IYEDYISILSPKEV+ D
Sbjct: 45 AGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARMIYEDYISILSPKEVSLD 104
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR
{Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A
1n8u_A* 1n8v_A* 2jnt_A
Length = 112
Score = 64.1 bits (156), Expect = 1e-14
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 1 MSECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQ 60
E +E++ ++ C+KCT +Q A VI L K+ E W+ L K+DP G + +K++
Sbjct: 40 GKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYE 99
Query: 61 EK 62
++
Sbjct: 100 DR 101
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding
protein G(K) subunit A; RGS, heterotrimeric G protein,
signall complex; HET: GDP; 2.71A {Homo sapiens} PDB:
2i59_A
Length = 153
Score = 64.7 bits (157), Expect = 2e-14
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ K FREFL+ E+SEEN+LFWLACED KK + ++EKA+ IY ++S + +V +
Sbjct: 43 EGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVE 102
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein;
NMR {Schistocerca gregaria}
Length = 109
Score = 63.4 bits (154), Expect = 2e-14
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 1 MSECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQ 60
E + IP L C KC Q + V++ L P+ W L K+DP G Y++K++
Sbjct: 42 GKELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYE 101
Query: 61 EK 62
++
Sbjct: 102 DR 103
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 150
Score = 64.3 bits (156), Expect = 2e-14
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F+ FL+ E+SEEN+ FW+ACED KK +P + EKA+ IYE++I +PKEV D
Sbjct: 37 YGLASFKSFLKSEFSEENLEFWIACEDYKKIKSPAKMAEKAKQIYEEFIQTEAPKEVNID 96
Query: 125 P 125
Sbjct: 97 H 97
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
activating protein, heterotrimeric G-protein,
lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
musculus} PDB: 3c7k_B* 2ik8_B*
Length = 137
Score = 63.5 bits (154), Expect = 3e-14
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F FL+ E+SEEN+ FWLACE+ KK + + +A I+++YI +PKEV D
Sbjct: 30 NGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFDEYIRSEAPKEVNID 89
Query: 125 P 125
Sbjct: 90 H 90
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein
signalling domain, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 154
Score = 63.9 bits (155), Expect = 3e-14
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKK--ESNPDVIEEKARFIYEDYISILSPKEVT 122
F EFL+ E+S EN+ FW ACE ++ S+ + ++AR IY++++S + V
Sbjct: 23 LGLAYFTEFLKKEFSAENVTFWKACERFQQIPASDTQQLAQEARNIYQEFLSSQALSPVN 82
Query: 123 QD 124
D
Sbjct: 83 ID 84
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 63.5 bits (154), Expect = 4e-14
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
D + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKEV D
Sbjct: 27 DGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLD 86
Query: 125 P 125
Sbjct: 87 F 87
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 155
Score = 62.8 bits (152), Expect = 8e-14
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLK--KESNPDVIEEKARFIYEDYISILSPKEVT 122
+ F +FLR E+SEENILFW ACE + + +AR I+ ++ + V
Sbjct: 27 VGVRYFSDFLRKEFSEENILFWQACEYFNHVPAHDKKELSYRAREIFSKFLCSKATTPVN 86
Query: 123 QD 124
D
Sbjct: 87 ID 88
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein,
structural genomics, structural genomics consortium,
SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Length = 151
Score = 62.7 bits (152), Expect = 8e-14
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
D + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKEV D
Sbjct: 23 DGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLD 82
Query: 125 P 125
Sbjct: 83 F 83
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 62.7 bits (152), Expect = 9e-14
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+F FL+ E+SEENI FWLACED KK + D++ KA IY+ ++ + K++ D
Sbjct: 34 TGQNVFGSFLKSEFSEENIEFWLACEDYKK-TESDLLPCKAEEIYKAFVHSDAAKQINID 92
Query: 125 P 125
Sbjct: 93 F 93
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics,
structural genomics consortium, SGC, signaling protein;
2.30A {Homo sapiens} PDB: 2v4z_B*
Length = 146
Score = 62.3 bits (151), Expect = 1e-13
Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
FR FL+ E+ EENI FWLACED KK +P + KAR IY D+I +PKE+ D
Sbjct: 35 YGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSKARKIYTDFIEKEAPKEINID 94
Query: 125 P 125
Sbjct: 95 F 95
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 61.9 bits (150), Expect = 2e-13
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F +FL E+S EN+ FWLA EDLKK + + + I++++++ +P + D
Sbjct: 25 VGREQFLKFLESEFSSENLRFWLAVEDLKKRPI-KEVPSRVQEIWQEFLAPGAPSAINLD 83
Query: 125 P 125
Sbjct: 84 S 84
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
signaling protein inhibitor; 2.30A {Homo sapiens}
Length = 127
Score = 61.5 bits (149), Expect = 2e-13
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+F+ FLR E+SEEN+ FWLACED KK + + KA+ I+ +YI+I + KEV D
Sbjct: 19 YGLAVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFAEYIAIQACKEVNLD 78
Query: 125 P 125
Sbjct: 79 S 79
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal
transduction/regulator), GTP-binding, GTPase activating
protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP:
a.91.1.1 PDB: 1ezt_A 1ezy_A
Length = 205
Score = 61.7 bits (149), Expect = 5e-13
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 67 YKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQDP 125
F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KEV D
Sbjct: 73 LAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLDS 131
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD,
GAP, signaling protein; 1.94A {Bos taurus} SCOP:
a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Length = 147
Score = 60.1 bits (145), Expect = 9e-13
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F+ FLR E+S EN+ FW ACEDLK + ++EKA IY+ +++ + + + D
Sbjct: 33 KGRQSFQHFLRKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRWINID 91
Query: 125 P 125
Sbjct: 92 G 92
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP
domain, DHEX domain, GGL domain, propeller, signaling
protein; 1.95A {Mus musculus}
Length = 424
Score = 62.1 bits (150), Expect = 1e-12
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F+ FL+ E+S EN+ FW ACEDLK + ++EKA IY+ +++ + + + D
Sbjct: 310 KGRQSFQYFLKKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRWINID 368
Query: 125 P 125
Sbjct: 369 G 369
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A
{Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Length = 147
Score = 56.2 bits (135), Expect = 2e-11
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYISILSPKE 120
D LFR FL+ E + + FW AC +K D EEK AR IY YI +
Sbjct: 24 DGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIV 83
Query: 121 VTQDP 125
Q
Sbjct: 84 SRQTK 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 9e-04
Identities = 29/196 (14%), Positives = 50/196 (25%), Gaps = 84/196 (42%)
Query: 1 MSECR--ENIPTVLQTLCEKCTPS-------------QTDKAVMVIRRL--KKDYPEEWK 43
+ C E + +LQ L + P+ + +RRL K Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 44 ILLEKWDPK--------------------------GEYTRKFQEKFGDTY------KLFR 71
+LL + K T + T L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 72 EFLRCEYSEENILFWLACEDLKKES---NPDVI--------EEKARFIY----------- 109
++L C +DL +E NP + + A +
Sbjct: 309 KYLDCR-----------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 110 --EDYISILSPKEVTQ 123
E +++L P E +
Sbjct: 358 IIESSLNVLEPAEYRK 373
Score = 27.9 bits (61), Expect = 0.89
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 25/95 (26%)
Query: 56 TRKFQEKFGDTYKLFRE-FLR---CEYSEE---NILFWLACEDLKKESNP--------DV 100
T + Q ++ D +F + F+ C+ ++ +IL + + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 101 IEEK-----ARFIYE----DYISILSP-KEVTQDP 125
+ K +F+ E +Y ++SP K + P
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Score = 27.5 bits (60), Expect = 1.3
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 62/165 (37%)
Query: 7 NIPT-VLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYT-----RKFQ 60
+IPT +L + S +V+ +L K L+EK + + + +
Sbjct: 386 HIPTILLSLIWFDVIKSDVM---VVVNKLHK------YSLVEKQPKESTISIPSIYLELK 436
Query: 61 EKFGDTYKLFREFLRCEYS--------------EENILFW-----LACEDLKKESN--PD 99
K + Y L R + Y+ + + L + +
Sbjct: 437 VKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 100 V------IEEKARF-------------------IYEDYISILSPK 119
V +E+K R Y+ YI PK
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 29.6 bits (67), Expect = 0.27
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 47 EKWDPKGEYTRKF 59
++ DP G Y +++
Sbjct: 444 KRLDPDGTYIKQY 456
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 29.2 bits (66), Expect = 0.31
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 47 EKWDPKGEYTRKF 59
+K DP+G Y RK+
Sbjct: 453 KKTDPQGHYIRKY 465
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 28.8 bits (65), Expect = 0.41
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 47 EKWDPKGEYTRKF 59
+K+DP G+Y R F
Sbjct: 429 KKYDPDGKYIRHF 441
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 29.0 bits (66), Expect = 0.43
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 32 RRLKKDYPEEWKILLEKWDPKGEY--TRK 58
RRL P W+ L + K TRK
Sbjct: 332 RRLSGQLPANWESKLPTYTAKDSAVATRK 360
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative
involvement in human inherited and disorders of purkinje
cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Length = 205
Score = 28.0 bits (62), Expect = 0.75
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 78 YSEENILFWLACEDLKKESNPDVIEEKARFI 108
Y EEN+ W CE +K + E A FI
Sbjct: 27 YCEENV--WKLCEYIKNHDQYPLEECYAVFI 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.83
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 23/126 (18%)
Query: 1 MS-ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKF 59
M + + Q + + D I + + P I KG+ R
Sbjct: 1631 MGMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG--GEKGKRIR-- 1685
Query: 60 QEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPK 119
+ Y + E + L E + KE N E + + +LS
Sbjct: 1686 -----ENY----SAMIFETIVDGKL---KTEKIFKEIN----EHSTSYTFRSEKGLLSAT 1729
Query: 120 EVTQDP 125
+ TQ P
Sbjct: 1730 QFTQ-P 1734
Score = 25.8 bits (56), Expect = 6.1
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 10/30 (33%)
Query: 61 EKFGDTYKLFREFLRCEYSEENILFWLACE 90
E F + R+ + +LF++
Sbjct: 290 ESF---FVSVRKAIT-------VLFFIGVR 309
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 27.8 bits (63), Expect = 0.92
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 32 RRLKKDYPEEWKILLEKWDPKGEY--TRK 58
+ + P W L K+ P+ TR
Sbjct: 342 SIITGELPTGWVDALPKYTPESPGDATRN 370
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 32 RRLKKDYPEEWKILLEKWDPKGEY--TRK 58
R L + P+ W L W+P + TR
Sbjct: 351 RLLAQKLPDGWDADLPHWEPGSKALATRA 379
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 27.2 bits (61), Expect = 1.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 47 EKWDPKGEYTRKF 59
K+DP GEY R++
Sbjct: 424 YKFDPNGEYVRRW 436
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 27.1 bits (61), Expect = 1.7
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 47 EKWDPKGEYTRKF 59
EK+D +GE+ R++
Sbjct: 406 EKFDHEGEFIRQW 418
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 26.8 bits (60), Expect = 1.9
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 47 EKWDPKGEYTRKF 59
+K+D Y +++
Sbjct: 413 KKFDATATYIKRW 425
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 26.7 bits (59), Expect = 2.0
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 86 WLACEDLKKESNPDVIEEKARFIYEDYISILSP 118
W+ + L D I R + + ++P
Sbjct: 204 WMVDKKLVTNGEWDEIARLTR----EIVEQVNP 232
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 26.7 bits (60), Expect = 2.3
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 47 EKWDPKGEYTRKF 59
E+ DP+G + +++
Sbjct: 375 ERHDPEGRWLKRW 387
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 26.7 bits (58), Expect = 2.4
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 38 YPEEWKILLEKWDPKGEYTRKFQ 60
+ L+K GEYT + Q
Sbjct: 901 HSHTSFTKLDK----GEYTIRLQ 919
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 31 IRRLKKDYPEEWKILLE 47
++RL+K YPE+W+ ++E
Sbjct: 150 LKRLQKAYPEQWQSIVE 166
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 26.1 bits (58), Expect = 3.5
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 47 EKWDPKGEYTRKF 59
+ +DP+GEY +
Sbjct: 455 QNYDPEGEYVAFW 467
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Length = 159
Score = 25.9 bits (57), Expect = 3.6
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 28 VMVIRRLKKDYPEEWKIL 45
++ + W ++
Sbjct: 23 PLLAEKCAAAPKGNWVVI 40
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 26.0 bits (58), Expect = 3.7
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 47 EKWDPKGEYTRKF 59
+++DP+G Y R +
Sbjct: 419 QQYDPQGTYLRHW 431
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 26.0 bits (58), Expect = 4.1
Identities = 4/13 (30%), Positives = 11/13 (84%)
Query: 47 EKWDPKGEYTRKF 59
EK+DP+ ++ +++
Sbjct: 372 EKFDPEAKFIKEW 384
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A
rhogap, protein phosphorylation, alternative splicing,
anti-oncogene, cell cycle; NMR {Homo sapiens}
Length = 69
Score = 24.6 bits (53), Expect = 4.8
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 22 SQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFG--DTYKLFREFLR 75
+ DK ++ R+ K++ E W + K EY + G KLF + +
Sbjct: 10 TAKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQD-YVYLEGTQKAKKLFLQHIH 64
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex,
hydrolase/inhibitor complex, EB repair, lytic protein,
epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP:
c.18.1.1
Length = 231
Score = 25.3 bits (56), Expect = 6.8
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 11/45 (24%)
Query: 39 PEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEENI 83
P+ W L+ F +R ++ +
Sbjct: 7 PDLWLDFLQ-----------LSPIFQRKLAAVIACVRRLRTQATV 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,019,810
Number of extensions: 112921
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 57
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)