RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1257
(125 letters)
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
(Mamestra brassicae) [TaxId: 55057]}
Length = 101
Score = 67.4 bits (165), Expect = 2e-16
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 3 ECRENIPTVLQTLCEKCTPSQTDKAVMVIRRLKKDYPEEWKILLEKWDPKGEYTRKFQEK 62
E +E++ ++ C+KCT +Q A VI L K+ E W+ L K+DP G + +K++++
Sbjct: 40 ELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDR 99
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18,
RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 62.3 bits (151), Expect = 3e-14
Identities = 31/61 (50%), Positives = 38/61 (62%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
D + F FL+ E+SEENI FW+ACED KK P I KA+ IYE +I +PKEV D
Sbjct: 21 DGLEAFTRFLKTEFSEENIEFWIACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLD 80
Query: 125 P 125
Sbjct: 81 F 81
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16,
RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 60.4 bits (146), Expect = 1e-13
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F FL+ E+SEEN+ FWLACE+ KK + + +A I+E++I +PKEV D
Sbjct: 10 NGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHQIFEEFICSEAPKEVNID 69
Query: 125 P 125
Sbjct: 70 H 70
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 128
Score = 60.4 bits (146), Expect = 2e-13
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
F+ FL+ EYSEENI FW++CE+ KK +P + KA+ IY ++IS+ + KEV D
Sbjct: 21 CGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKLSPKAKKIYNEFISVQATKEVNLD 80
Query: 125 P 125
Sbjct: 81 S 81
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 59.7 bits (144), Expect = 3e-13
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+FR FLR EYSEEN+LFWLACE+LK E+N V++EKAR IYEDY+SILSPKEV+ D
Sbjct: 21 AGRSVFRAFLRTEYSEENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLD 80
Query: 125 P 125
Sbjct: 81 S 81
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 57.0 bits (137), Expect = 5e-12
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEK----ARFIYEDYISILSPKE 120
D LFR FL+ E + + FW AC +K D EEK AR IY YI +
Sbjct: 24 DGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIV 83
Query: 121 VTQ 123
Q
Sbjct: 84 SRQ 86
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 157
Score = 56.9 bits (137), Expect = 6e-12
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 43 KILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEE--NILFWLACEDLKKESNPDV 100
K L ++ + + + F +K G Y LFR+F E + F+ + +K +
Sbjct: 17 KYLEDRGE--VTFEKIFSQKLG--YLLFRDFCLKHLEEAKPLVEFYEEIKKYEKLETEEE 72
Query: 101 IEEKARFIYEDYISILSPKEVTQ 123
+R I++ YI
Sbjct: 73 RLVCSREIFDTYIMKELLACSHP 95
>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 138
Score = 54.6 bits (131), Expect = 4e-11
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 DTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQD 124
+ F+ FLR E+S EN+ FW ACEDLK + ++EKA IY+ +++ + + + D
Sbjct: 26 KGRQSFQHFLRKEFSGENLGFWEACEDLKY-GDQSKVKEKAEEIYKLFLAPGARRWINID 84
Query: 125 P 125
Sbjct: 85 G 85
>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 53.3 bits (128), Expect = 2e-10
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 70 FREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYISILSPKEVTQDP 125
F ++ + +LF+L E ++ ++P + I+ ++ +P V
Sbjct: 22 FLRYIFSQADPSPLLFYLCAEVYQQ-ASPKDSRSLGKDIWNIFLEKNAPLRVKIPE 76
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 117
Score = 25.7 bits (57), Expect = 1.0
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 24 TDKAVMVIRRLKKDYPEEWKILLEKW 49
V + + LK Y E+ I+++
Sbjct: 44 GAPGVRISQHLKSKYAEQMTIVIQHQ 69
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638
{Staphylococcus aureus [TaxId: 1280]}
Length = 118
Score = 25.6 bits (55), Expect = 1.2
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 31 IRRLKKDYPEEWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACE 90
+R L KD K + + + + L E + N ++
Sbjct: 1 MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYEN 60
Query: 91 D 91
+
Sbjct: 61 E 61
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
[TaxId: 562]}
Length = 213
Score = 25.9 bits (57), Expect = 1.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 96 SNPDVIEEKARFIYEDYISILSPK-EVTQDP 125
+ ++ A IY D IS L P+ +VT P
Sbjct: 126 QSETLMSAMAA-IYVDVISPLGPRIQVTGSP 155
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 24.3 bits (52), Expect = 5.7
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 54 EYTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYEDYI 113
+ + +++FG +F+ E +++LF + L K +E F+ + +
Sbjct: 272 DLLERQEKRFGVNGSEKSKFMMFESQNKDLLFKDLTKCLFKVREGTTYKE---FLGDKFY 328
Query: 114 SILS 117
+++S
Sbjct: 329 TVIS 332
>d1r9fa_ d.255.1.1 (A:) Tombusvirus P19 core protein, VP19 {Tomato
bushy stunt virus, TBSV [TaxId: 12145]}
Length = 124
Score = 23.8 bits (51), Expect = 5.9
Identities = 9/43 (20%), Positives = 24/43 (55%)
Query: 41 EWKILLEKWDPKGEYTRKFQEKFGDTYKLFREFLRCEYSEENI 83
EW++ ++ + + F+E +G +F+ +LR + +E ++
Sbjct: 17 EWRLHNDETNSNQDNPLGFKESWGFGKVVFKRYLRYDRTEASL 59
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 23.9 bits (50), Expect = 6.9
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 31 IRRLKKDYPEEWKILLE 47
++RL+K YPE+W+ ++E
Sbjct: 6 LKRLQKAYPEQWQSIVE 22
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.0 bits (49), Expect = 7.9
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 55 YTRKFQEKFGDTYKLFREFLRC--EYSEENILFWLACEDL-KKESNPDVIEEKARFIYE 110
Y K + +F +++ FL Y +E A + + +V + AR
Sbjct: 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKN 74
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE
{Streptomyces coelicolor [TaxId: 1902]}
Length = 88
Score = 23.2 bits (50), Expect = 8.0
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 36 KDYPEEWKILLEKW---DPKGEYTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACEDL 92
K + E + L K DP T + +K + + ++ + E +
Sbjct: 1 KTFEELFTELQHKAANGDPATSRTAELVDK--GVHAIGKKVVE----EAAEV----WMAA 50
Query: 93 KKESNPDVIEEKARFIY 109
+ E EE ++ +Y
Sbjct: 51 EYEGKDAAAEEISQLLY 67
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId:
10090]}
Length = 85
Score = 22.5 bits (48), Expect = 9.9
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 55 YTRKFQEKFGDTYKLFREFLRCEYSEENILFWLACEDLKKESNPDVIEEKARFIYE 110
Y K + +F D +++R FL ++ + + S +V E A
Sbjct: 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRG 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 523,590
Number of extensions: 25415
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 33
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.0 bits)