BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12571
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 27 TSVALRGLRLAVEECQHQFHKNRWNC 52
SVA+ G + +EEC++QF RWNC
Sbjct: 20 ASVAV-GAQNGIEECKYQFAWERWNC 44
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 116 TSVALRGLRLAVEECQHQFHKNRWNC 141
SVA+ G + +EEC++QF RWNC
Sbjct: 20 ASVAV-GAQNGIEECKYQFAWERWNC 44
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 3 IAMCKSLSGLTKTQLDLCYKHPEVTSVA---LRGLRL 36
+ +CK G K+ +C+KHPE S A L G+RL
Sbjct: 46 VTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 92 IAMCKSLSGLTKTQLDLCYKHPEVTSVA---LRGLRL 125
+ +CK G K+ +C+KHPE S A L G+RL
Sbjct: 46 VTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 28/100 (28%)
Query: 35 RLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAM 94
R A+EE + + T+ NP T +L KK +++ + G+A
Sbjct: 48 RFALEESGYIY-----------TRLGNPTTDALEKKLAVL-----------ERGEAGLAT 85
Query: 95 CKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQF 134
+S +T T L LC + + S + A+ C H F
Sbjct: 86 ASGISAITTTLLTLCQQGDHIVSAS------AIYGCTHAF 119
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 28/100 (28%)
Query: 35 RLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAM 94
R A+EE + + T+ NP T +L KK +++ + G+A
Sbjct: 48 RFALEESGYIY-----------TRLGNPTTDALEKKLAVL-----------ERGEAGLAT 85
Query: 95 CKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQF 134
+S +T T L LC + + S + A+ C H F
Sbjct: 86 ASGISAITTTLLTLCQQGDHIVSAS------AIYGCTHAF 119
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 28/100 (28%)
Query: 35 RLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAM 94
R A+EE + + T+ NP T +L KK +++ + G+A
Sbjct: 48 RFALEESGYIY-----------TRLGNPTTDALEKKLAVL-----------ERGEAGLAT 85
Query: 95 CKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQF 134
+S +T T L LC + + S + A+ C H F
Sbjct: 86 ASGISAITTTLLTLCQQGDHIVSAS------AIYGCTHAF 119
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 28/100 (28%)
Query: 35 RLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAM 94
R A+EE + + T+ NP T +L KK +++ + G+A
Sbjct: 48 RFALEESGYIY-----------TRLGNPTTDALEKKLAVL-----------ERGEAGLAT 85
Query: 95 CKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQF 134
+S +T T L LC + + S + A+ C H F
Sbjct: 86 ASGISAITTTLLTLCQQGDHIVSAS------AIYGCTHAF 119
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYAS 85
H LL+ ++V+ IHW TK A
Sbjct: 177 HLFPLLRNLTLVAGIHWPTKVAD 199
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 100 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 154
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 101 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 155
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 100 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 154
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 100 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 154
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 97 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 151
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 100 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 154
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 101 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 155
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 101 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 155
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 63 HTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTS 117
H + + SIV + H+ST R + L GLT T ++ Y P+ +
Sbjct: 101 HKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVT 155
>pdb|1UI5|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
Like Protein)
pdb|1UI5|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa
Like Protein)
Length = 215
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 80 STKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLA 126
S + A DL RG + ++L LT LC + P + + GLRLA
Sbjct: 68 SRRLAKDLDGRGYSSLEALXRLTFGXARLCVQGPVLRA----GLRLA 110
>pdb|1UI6|A Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor
(Arpa-Like Protein)
pdb|1UI6|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor
(Arpa-Like Protein)
Length = 215
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 80 STKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLA 126
S + A DL RG + ++L LT LC + P + + GLRLA
Sbjct: 68 SRRLAKDLDGRGYSSLEALMRLTFGMARLCVQGPVLRA----GLRLA 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.128 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,135,754
Number of Sequences: 62578
Number of extensions: 131375
Number of successful extensions: 446
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)