Query psy12571
Match_columns 159
No_of_seqs 206 out of 765
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:46:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 99.9 6.8E-24 1.5E-28 179.0 4.7 82 5-89 47-128 (356)
2 PF00110 wnt: wnt family; Int 99.9 1.9E-23 4.1E-28 175.3 0.3 81 5-88 1-82 (310)
3 smart00097 WNT1 found in Wnt-1 99.8 1.9E-21 4.1E-26 162.8 5.0 78 9-89 2-79 (305)
4 KOG3913|consensus 99.8 1.7E-19 3.7E-24 152.4 6.2 63 93-158 46-108 (356)
5 PF00110 wnt: wnt family; Int 99.7 9.2E-19 2E-23 147.0 1.8 62 94-158 1-63 (310)
6 smart00097 WNT1 found in Wnt-1 99.7 1.2E-16 2.7E-21 133.8 6.0 58 98-158 2-59 (305)
7 PLN02277 H(+) -translocating i 47.6 19 0.00042 34.0 3.2 23 115-137 561-583 (730)
8 TIGR01104 V_PPase vacuolar-typ 46.5 20 0.00044 33.7 3.2 23 115-137 529-551 (697)
9 PLN02277 H(+) -translocating i 43.0 27 0.00058 33.2 3.4 44 26-73 561-604 (730)
10 TIGR01104 V_PPase vacuolar-typ 42.1 28 0.00061 32.8 3.3 44 26-73 529-572 (697)
11 PRK00733 hppA membrane-bound p 40.6 30 0.00065 32.5 3.3 24 115-138 504-527 (666)
12 PLN02255 H(+) -translocating i 38.2 33 0.00071 32.7 3.2 23 115-137 592-614 (765)
13 PRK00733 hppA membrane-bound p 37.6 37 0.0008 31.9 3.4 44 26-73 504-547 (666)
14 PF03030 H_PPase: Inorganic H+ 37.3 32 0.0007 32.4 3.0 24 115-138 529-552 (682)
15 PF03030 H_PPase: Inorganic H+ 34.1 45 0.00098 31.5 3.4 44 26-73 529-572 (682)
16 PLN02255 H(+) -translocating i 33.7 46 0.00099 31.8 3.3 44 26-73 592-635 (765)
17 PF06345 Drf_DAD: DRF Autoregu 29.2 45 0.00098 15.4 1.3 13 25-37 1-13 (15)
18 COG3728 XtmA Phage terminase, 23.9 43 0.00092 26.3 1.2 27 11-37 2-28 (179)
No 1
>KOG3913|consensus
Probab=99.89 E-value=6.8e-24 Score=179.00 Aligned_cols=82 Identities=33% Similarity=0.600 Sum_probs=76.9
Q ss_pred hhcCCCCCcHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhhhcccccccccc
Q psy12571 5 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYA 84 (159)
Q Consensus 5 ~C~~~~~l~~~Q~~lC~~~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~e~a~~wa~~~a 84 (159)
+|+.++||+++|+++|+++|++|++|.+|+++||+|||+||+++|||||... ..++|+++++.|+||+||+|++++|
T Consensus 47 ~C~~l~gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~---~~~~~g~~l~~g~REsAFv~AIssA 123 (356)
T KOG3913|consen 47 LCDNLPGLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLD---QLPVFGPLLSRGTRETAFVYAISSA 123 (356)
T ss_pred chhhccccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCc---cccccchhhcccchHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999864 4678999999999999999999999
Q ss_pred chhhh
Q psy12571 85 SDLQA 89 (159)
Q Consensus 85 s~l~l 89 (159)
++...
T Consensus 124 gV~ha 128 (356)
T KOG3913|consen 124 GVAHA 128 (356)
T ss_pred HHHHH
Confidence 87543
No 2
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.86 E-value=1.9e-23 Score=175.30 Aligned_cols=81 Identities=36% Similarity=0.700 Sum_probs=47.1
Q ss_pred hhcCCCCCcHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccc-hhhhhhhhccccccccc
Q psy12571 5 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSS-LLKKFSIVSSIHWSTKY 83 (159)
Q Consensus 5 ~C~~~~~l~~~Q~~lC~~~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~-~L~~gt~e~a~~wa~~~ 83 (159)
||++++||+++|+++|+++|++|++|++|+++|++|||+||+++|||||.... .+.|++ ++..|+||+||++++++
T Consensus 1 iC~~~~gL~~~Q~~~C~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~---~~~f~~~~~~~gtrE~Afv~Ai~s 77 (310)
T PF00110_consen 1 ICDKIPGLTKRQRRLCRRNPDLMPSIAEGAKMAIEECQHQFRNRRWNCSTVDN---NPVFGPPILKKGTRETAFVYAISS 77 (310)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHTTTSSS-----T----THHHH-TT--S--HHHHHHHHHHH
T ss_pred CCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc---cccccccccccCcccceeeEhhhc
Confidence 79999999999999999999999999999999999999999999999998752 355776 99999999999999988
Q ss_pred cchhh
Q psy12571 84 ASDLQ 88 (159)
Q Consensus 84 as~l~ 88 (159)
|+...
T Consensus 78 Agv~~ 82 (310)
T PF00110_consen 78 AGVAH 82 (310)
T ss_dssp HHHHH
T ss_pred CchHH
Confidence 88643
No 3
>smart00097 WNT1 found in Wnt-1.
Probab=99.84 E-value=1.9e-21 Score=162.83 Aligned_cols=78 Identities=32% Similarity=0.555 Sum_probs=71.2
Q ss_pred CCCCcHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhhhccccccccccchhh
Q psy12571 9 LSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQ 88 (159)
Q Consensus 9 ~~~l~~~Q~~lC~~~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~e~a~~wa~~~as~l~ 88 (159)
+++|+++|+++|+++|++|++|++|+++|++|||+||+++|||||... ..+.|++++..++||+||++++.+|+.+.
T Consensus 2 ~~~l~~~Q~~~C~~~~~~~~~v~~g~~~ai~ECq~QF~~~rWNCs~~~---~~~~~~~~l~~~trEtAfv~Ai~sAgv~~ 78 (305)
T smart00097 2 LPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLD---NASVFGKVLRQGTRETAFVYAISSAGVAH 78 (305)
T ss_pred CcccCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCc---CCcccccccccccchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999763 35779999999999999999999888754
Q ss_pred h
Q psy12571 89 A 89 (159)
Q Consensus 89 l 89 (159)
.
T Consensus 79 ~ 79 (305)
T smart00097 79 A 79 (305)
T ss_pred H
Confidence 3
No 4
>KOG3913|consensus
Probab=99.78 E-value=1.7e-19 Score=152.41 Aligned_cols=63 Identities=40% Similarity=0.775 Sum_probs=59.5
Q ss_pred ccccccchhcHHHHhHhhcCcchHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccc
Q psy12571 93 AMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLK 158 (159)
Q Consensus 93 ~~C~~~~~l~~~Q~~~C~~~~~~~~~i~~g~~~~~~eCq~qF~~~RWNCs~~~~~~~~~~~~~~l~ 158 (159)
.+|+.++||+++|+++|+++|++|++|.+|+++||+|||+||+++|||||+.+ ..++||++|+
T Consensus 46 ~~C~~l~gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~---~~~~~g~~l~ 108 (356)
T KOG3913|consen 46 PLCDNLPGLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLD---QLPVFGPLLS 108 (356)
T ss_pred cchhhccccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCc---cccccchhhc
Confidence 48999999999999999999999999999999999999999999999999877 3688999987
No 5
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.72 E-value=9.2e-19 Score=147.02 Aligned_cols=62 Identities=44% Similarity=0.917 Sum_probs=31.8
Q ss_pred cccccchhcHHHHhHhhcCcchHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccc-ccc
Q psy12571 94 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSS-LLK 158 (159)
Q Consensus 94 ~C~~~~~l~~~Q~~~C~~~~~~~~~i~~g~~~~~~eCq~qF~~~RWNCs~~~~~~~~~~~~~-~l~ 158 (159)
||.+++||+++|+++|+++|++|++|++|+++|++|||+||+++|||||+.+. .+.|++ +|+
T Consensus 1 iC~~~~gL~~~Q~~~C~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~---~~~f~~~~~~ 63 (310)
T PF00110_consen 1 ICDKIPGLTKRQRRLCRRNPDLMPSIAEGAKMAIEECQHQFRNRRWNCSTVDN---NPVFGPPILK 63 (310)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHTTTSSS-----T----THHHH-TT--
T ss_pred CCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc---cccccccccc
Confidence 69999999999999999999999999999999999999999999999998765 255655 554
No 6
>smart00097 WNT1 found in Wnt-1.
Probab=99.65 E-value=1.2e-16 Score=133.84 Aligned_cols=58 Identities=40% Similarity=0.743 Sum_probs=52.3
Q ss_pred cchhcHHHHhHhhcCcchHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccc
Q psy12571 98 LSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLK 158 (159)
Q Consensus 98 ~~~l~~~Q~~~C~~~~~~~~~i~~g~~~~~~eCq~qF~~~RWNCs~~~~~~~~~~~~~~l~ 158 (159)
+++|++.|+++|+++|++|++|++|+++|++|||+||+++|||||+.+. .+.|+++|+
T Consensus 2 ~~~l~~~Q~~~C~~~~~~~~~v~~g~~~ai~ECq~QF~~~rWNCs~~~~---~~~~~~~l~ 59 (305)
T smart00097 2 LPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDN---ASVFGKVLR 59 (305)
T ss_pred CcccCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcC---Ccccccccc
Confidence 5689999999999999999999999999999999999999999997643 467887775
No 7
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=47.62 E-value=19 Score=34.03 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKN 137 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~ 137 (159)
.|.+|.+++..-++|+++|||..
T Consensus 561 ~m~AVg~aA~~mVeEVRRQFrei 583 (730)
T PLN02277 561 ACAAVGRTAQEVVNEVRRQFAER 583 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 8
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=46.50 E-value=20 Score=33.70 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKN 137 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~ 137 (159)
.|.+|.+++..-++|+++|||..
T Consensus 529 ~m~AVg~aA~~mV~EVRRQFrei 551 (697)
T TIGR01104 529 TMKSVGRAALKMVEEVRRQFNTI 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 57899999999999999999874
No 9
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=43.03 E-value=27 Score=33.17 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|.+++..-++|++.|||..+ .+-.++..|-+.+-.+.-|+
T Consensus 561 ~m~AVg~aA~~mVeEVRRQFreip----Gi~eG~~kPdY~~cV~I~T~ 604 (730)
T PLN02277 561 ACAAVGRTAQEVVNEVRRQFAERP----GIMDYKEKPDYGRCVAIVAS 604 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc----ccccCCCCCChHHHHHHHHH
Confidence 588999999999999999998642 22222344556655555443
No 10
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=42.05 E-value=28 Score=32.84 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|.+++..-++|++.|||..+ .+-.++..|-+.+-.+.-|+
T Consensus 529 ~m~AVg~aA~~mV~EVRRQFreip----Gi~eG~~kPdY~~cV~I~T~ 572 (697)
T TIGR01104 529 TMKSVGRAALKMVEEVRRQFNTIP----GLMEGTAKPDYATCVKISTD 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCc----ccccCCCCCCcHHHHHHHHH
Confidence 588999999999999999998642 22122344556655554443
No 11
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=40.58 E-value=30 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKNR 138 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~R 138 (159)
.|.+|.+++...++|+++|||..+
T Consensus 504 ~m~AVg~aA~~mV~EVRrQFre~p 527 (666)
T PRK00733 504 AMTAVGRAAGAMVEEVRRQFREIP 527 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 578999999999999999998753
No 12
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=38.23 E-value=33 Score=32.71 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKN 137 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~ 137 (159)
.|.+|.+++..-++|+++|||..
T Consensus 592 ~m~AVg~aA~~mV~EVRRQFrei 614 (765)
T PLN02255 592 TMKSVGSAALKMVEEVRRQFNTI 614 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 57899999999999999999874
No 13
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=37.64 E-value=37 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|.+++..-++|++.|||..+ .+-.++..|-+.+-.+.-|+
T Consensus 504 ~m~AVg~aA~~mV~EVRrQFre~p----Gi~eg~~kPdY~~cV~I~T~ 547 (666)
T PRK00733 504 AMTAVGRAAGAMVEEVRRQFREIP----GIMEGTAKPDYARCVDISTK 547 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc----ccccCCCCCChHHHHHHHHH
Confidence 578999999999999999998754 22222345556655554443
No 14
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=37.31 E-value=32 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKNR 138 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~R 138 (159)
.|.+|.+++..-++|+++|||..+
T Consensus 529 ~m~aVg~aA~~mV~EvRrQFre~p 552 (682)
T PF03030_consen 529 TMKAVGRAAGKMVEEVRRQFREIP 552 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 577999999999999999999853
No 15
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=34.06 E-value=45 Score=31.46 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|-+++..-++|++.|||..+ .+-.++..|-+.+-...-|+
T Consensus 529 ~m~aVg~aA~~mV~EvRrQFre~p----gi~eg~~~pdy~~cV~I~T~ 572 (682)
T PF03030_consen 529 TMKAVGRAAGKMVEEVRRQFREIP----GIMEGKAKPDYARCVDISTR 572 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST----TTTTTSS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----CcccCCCCCChHHHHHHHHH
Confidence 578999999999999999998854 22122334555555554443
No 16
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=33.71 E-value=46 Score=31.79 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|-+++..-++|++.|||..+ .+-.+...|-+.+-.+.-|+
T Consensus 592 ~m~AVg~aA~~mV~EVRRQFreip----GimeG~~kPDY~~cV~I~T~ 635 (765)
T PLN02255 592 TMKSVGSAALKMVEEVRRQFNTIP----GLMEGTAKPDYATCVKISTD 635 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCc----chhcCCCCCChHHHHHHHHH
Confidence 588999999999999999998743 22222345556666655544
No 17
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=29.24 E-value=45 Score=15.43 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=8.8
Q ss_pred chHHHHHHHHHHH
Q psy12571 25 EVTSVALRGLRLA 37 (159)
Q Consensus 25 ~~~~~i~~g~~~~ 37 (159)
++|.+++++.+.+
T Consensus 1 gvmdsllealqtg 13 (15)
T PF06345_consen 1 GVMDSLLEALQTG 13 (15)
T ss_dssp -HHHHHHHHHHHS
T ss_pred CcHHHHHHHHHcc
Confidence 4678888877654
No 18
>COG3728 XtmA Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=23.85 E-value=43 Score=26.34 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=18.0
Q ss_pred CCcHHHHHHHhcCcchHHHHHHHHHHH
Q psy12571 11 GLTKTQLDLCYKHPEVTSVALRGLRLA 37 (159)
Q Consensus 11 ~l~~~Q~~lC~~~~~~~~~i~~g~~~~ 37 (159)
-||.+|+++|..+-..-++--.+++.|
T Consensus 2 ~Lt~kQrrF~~eyi~~~naT~sA~~AG 28 (179)
T COG3728 2 ELTEKQRRFVDEYIKTFNATQSAIKAG 28 (179)
T ss_pred cccHHHHHHHHHHHHcccHhHHHHHhc
Confidence 389999999987655544444444443
Done!