Query psy12571
Match_columns 159
No_of_seqs 206 out of 765
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 99.6 1.9E-17 6.4E-22 138.2 0.4 69 16-88 4-77 (316)
2 4f0a_B Protein WNT-8, XWNT-8; 99.3 8.3E-13 2.8E-17 110.1 2.6 34 111-144 14-47 (316)
3 2cmp_A G1P, terminase small su 35.5 7.9 0.00027 24.2 0.0 17 99-115 7-23 (63)
4 4a01_A Proton pyrophosphatase; 28.2 36 0.0012 31.2 3.0 23 115-137 593-615 (766)
5 4a01_A Proton pyrophosphatase; 26.1 48 0.0016 30.4 3.4 44 26-73 593-636 (766)
6 4av3_A K(+)-stimulated pyropho 23.2 26 0.0009 32.0 1.2 23 115-137 571-593 (735)
7 3zqp_A Terminase small subunit 19.9 22 0.00076 26.4 0.0 18 99-116 23-40 (164)
8 4av3_A K(+)-stimulated pyropho 19.6 35 0.0012 31.1 1.2 44 26-73 571-614 (735)
9 2lqx_A Trypsin inhibitor BWI-2 19.8 34 0.0012 19.0 0.0 17 125-141 6-22 (41)
10 4a1s_C RE60102P, INSC; cell cy 14.6 47 0.0016 18.6 0.5 8 136-143 16-23 (40)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.64 E-value=1.9e-17 Score=138.17 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=53.5
Q ss_pred HHHHHhc----CcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccc-hhhhhhhhccccccccccchhh
Q psy12571 16 QLDLCYK----HPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSS-LLKKFSIVSSIHWSTKYASDLQ 88 (159)
Q Consensus 16 Q~~lC~~----~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~-~L~~gt~e~a~~wa~~~as~l~ 88 (159)
|..|+.. +|++|++|.+|+++||+|||+||+++|||||... .+++++ +|..|+||+||++++++|+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~~----~~~~~~~~l~~g~REtAFv~AissAgv~~ 77 (316)
T 4f0a_B 4 VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPEST----LQLATHNGLRSATRETSFVHAISSAGVMY 77 (316)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCCT----THHHHCTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc----cccCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 4455554 4579999999999999999999999999999542 344555 6889999999999999998754
No 2
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.28 E-value=8.3e-13 Score=110.12 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=31.6
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q psy12571 111 KHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 144 (159)
Q Consensus 111 ~~~~~~~~i~~g~~~~~~eCq~qF~~~RWNCs~~ 144 (159)
++|++|++|.+|+++||+|||+||+++|||||+.
T Consensus 14 ~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~ 47 (316)
T 4f0a_B 14 AYLTYSASVAVGAQNGIEECKYQFAWERWNCPES 47 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 4678999999999999999999999999999964
No 3
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=35.49 E-value=7.9 Score=24.22 Aligned_cols=17 Identities=12% Similarity=-0.146 Sum_probs=12.7
Q ss_pred chhcHHHHhHhhcCcch
Q psy12571 99 SGLTKTQLDLCYKHPEV 115 (159)
Q Consensus 99 ~~l~~~Q~~~C~~~~~~ 115 (159)
..||++|++||..+..-
T Consensus 7 ~~LT~kQ~~F~~~Yi~~ 23 (63)
T 2cmp_A 7 PKLSPKQERFIEEYFIN 23 (63)
T ss_dssp -CCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 36899999999865443
No 4
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=28.19 E-value=36 Score=31.21 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKN 137 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~ 137 (159)
.|.+|.+++..-++|++.|||..
T Consensus 593 tm~AVg~AA~~mV~EVRRQFrei 615 (766)
T 4a01_A 593 TMKSVGSAALKMVEEVRRQFNTI 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 5
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=26.06 E-value=48 Score=30.40 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|-+++..-++|++.|||..+ .+-.+...|-+++-.+.-|+
T Consensus 593 tm~AVg~AA~~mV~EVRRQFreip----GImeg~~kPDY~rcV~I~T~ 636 (766)
T 4a01_A 593 TMKSVGSAALKMVEEVRRQFNTIP----GLMEGTAKPDYATCVKISTD 636 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST----TTTTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----CcccCCCCCChHHHHHHHHH
Confidence 578999999999999999998742 22122345656666555543
No 6
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=23.15 E-value=26 Score=31.97 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q psy12571 115 VTSVALRGLRLAVEECQHQFHKN 137 (159)
Q Consensus 115 ~~~~i~~g~~~~~~eCq~qF~~~ 137 (159)
.|.+|.+++...++|++.|||..
T Consensus 571 tm~AVgrAA~~mV~EVRRQFrei 593 (735)
T 4av3_A 571 LISAVTKAAMKMVDEIRRQAREI 593 (735)
T ss_dssp HHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 47899999999999999999863
No 7
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=19.95 E-value=22 Score=26.38 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=0.0
Q ss_pred chhcHHHHhHhhcCcchH
Q psy12571 99 SGLTKTQLDLCYKHPEVT 116 (159)
Q Consensus 99 ~~l~~~Q~~~C~~~~~~~ 116 (159)
..||++|++||..+..-.
T Consensus 23 ~~LT~KQ~~F~~eYi~~~ 40 (164)
T 3zqp_A 23 PKLSPKQERFIEEYFIND 40 (164)
T ss_dssp ------------------
T ss_pred ccCCHHHHHHHHHHHhcC
Confidence 469999999998776544
No 8
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.65 E-value=35 Score=31.15 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhh
Q psy12571 26 VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSI 73 (159)
Q Consensus 26 ~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~ 73 (159)
.|.+|-+++...++|++.|||..+ .+-.++..|-+++..+.-|+
T Consensus 571 tm~AVgrAA~~mV~EVRRQFreip----Gimeg~~kPdy~~cV~I~T~ 614 (735)
T 4av3_A 571 LISAVTKAAMKMVDEIRRQAREIP----GLLEGKAKPDYNRCIEITSD 614 (735)
T ss_dssp HHHHHHHHHHHHHTC-----------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC----CcccCCCCCChHHHHHHHHH
Confidence 488999999999999999998632 22122344556666555543
No 9
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=19.75 E-value=34 Score=18.98 Aligned_cols=17 Identities=35% Similarity=0.780 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCCCCC
Q psy12571 125 LAVEECQHQFHKNRWNC 141 (159)
Q Consensus 125 ~~~~eCq~qF~~~RWNC 141 (159)
.-++|||.--+-.||.=
T Consensus 6 qeleecqnvcrmkrwst 22 (41)
T 2lqx_A 6 QELEECQNVCRMKRWST 22 (41)
Confidence 45789999999999963
No 10
>4a1s_C RE60102P, INSC; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=14.58 E-value=47 Score=18.61 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=5.9
Q ss_pred cCCCCCCC
Q psy12571 136 KNRWNCSS 143 (159)
Q Consensus 136 ~~RWNCs~ 143 (159)
..||||..
T Consensus 16 eQRW~~e~ 23 (40)
T 4a1s_C 16 EQRWAGEP 23 (40)
T ss_dssp HHTTCCCC
T ss_pred hccccCCh
Confidence 46999963
Done!