Query psy12571
Match_columns 159
No_of_seqs 206 out of 765
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 22:47:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12571.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12571hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 15.4 8.7 0.00064 22.4 -1.1 23 102-138 41-63 (70)
2 d2ux9a1 d.230.2.1 (A:2-67) Unc 6.8 92 0.0067 18.0 1.4 22 29-50 16-37 (66)
3 d2cc6a1 d.230.2.1 (A:2-65) Fla 6.5 98 0.0071 17.7 1.4 22 29-50 14-35 (64)
4 d1dqea_ a.39.2.1 (A:) Moth phe 6.5 1.2E+02 0.0091 19.1 2.1 22 24-45 2-23 (137)
5 d1xp8a2 d.48.1.1 (A:283-341) R 6.1 1.6E+02 0.012 16.3 2.2 20 19-38 39-58 (59)
6 d2jpoa1 a.39.2.1 (A:1-142) Mot 5.8 68 0.0049 20.7 0.3 23 23-45 1-23 (142)
7 d1rcua_ c.129.1.1 (A:) Hypothe 5.5 1.3E+02 0.0092 20.0 1.7 16 111-126 43-58 (170)
8 d2e1oa1 a.4.1.1 (A:8-64) Homeo 5.2 1.2E+02 0.0089 16.3 1.2 34 11-44 6-45 (57)
9 d1vpra1 b.60.1.7 (A:868-1218) 5.0 1.3E+02 0.0092 22.1 1.5 13 10-22 114-126 (351)
10 d1jhfa1 a.4.5.2 (A:2-72) LexA 4.7 1.5E+02 0.011 16.7 1.4 9 11-19 2-10 (71)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=15.37 E-value=8.7 Score=22.42 Aligned_cols=23 Identities=26% Similarity=0.824 Sum_probs=15.8
Q ss_pred cHHHHhHhhcCcchHHHHHHHHHHHHHHHHHHhccCC
Q psy12571 102 TKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNR 138 (159)
Q Consensus 102 ~~~Q~~~C~~~~~~~~~i~~g~~~~~~eCq~qF~~~R 138 (159)
.+.-+.+|.++|| ||..|.+++|
T Consensus 41 qr~l~~ice~hpd--------------ecevq~knr~ 63 (70)
T d2vqca1 41 QRALKAICERHPD--------------ECEVQYKNRK 63 (70)
T ss_dssp HHHHHHHHHHCTT--------------TEEEEECSSC
T ss_pred HHHHHHHHhcCCc--------------hhheeeccch
Confidence 3444567888885 7777777765
No 2
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=6.85 E-value=92 Score=17.97 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhccCcc
Q psy12571 29 VALRGLRLAVEECQHQFHKNRW 50 (159)
Q Consensus 29 ~i~~g~~~~~~eC~~qF~~~rW 50 (159)
++-+|++.|+.+-.+..++=+|
T Consensus 16 S~edAi~~Ai~~AskTl~ni~~ 37 (66)
T d2ux9a1 16 GLEAAIQAALARARKTLRHLDW 37 (66)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHhhhCccCcEE
Confidence 5678999999999999998888
No 3
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=6.52 E-value=98 Score=17.71 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhccCcc
Q psy12571 29 VALRGLRLAVEECQHQFHKNRW 50 (159)
Q Consensus 29 ~i~~g~~~~~~eC~~qF~~~rW 50 (159)
|+-+|++.|+.+-.+..++=+|
T Consensus 14 S~edAi~~Ai~~AskTl~ni~~ 35 (64)
T d2cc6a1 14 SFTAAADDAIDRAEDTLDNVVW 35 (64)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEE
T ss_pred CHHHHHHHHHHHHhhCccCceE
Confidence 5678999999999999999888
No 4
>d1dqea_ a.39.2.1 (A:) Moth pheromone-binding protein, PBP {Silk moth (Bombyx mori) [TaxId: 7091]}
Probab=6.51 E-value=1.2e+02 Score=19.10 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q psy12571 24 PEVTSVALRGLRLAVEECQHQF 45 (159)
Q Consensus 24 ~~~~~~i~~g~~~~~~eC~~qF 45 (159)
+++|+-+......++++|..+-
T Consensus 2 ~~~~~~~~~~~~~~~e~C~~e~ 23 (137)
T d1dqea_ 2 QEVMKNLSLNFGKALDECKKEM 23 (137)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHhHh
Confidence 5778888888899999998764
No 5
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.08 E-value=1.6e+02 Score=16.32 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.0
Q ss_pred HHhcCcchHHHHHHHHHHHH
Q psy12571 19 LCYKHPEVTSVALRGLRLAV 38 (159)
Q Consensus 19 lC~~~~~~~~~i~~g~~~~~ 38 (159)
.=..+|+++..|-..++.++
T Consensus 39 ~L~enpel~~eie~~i~~~l 58 (59)
T d1xp8a2 39 YIAERPEMEQEIRDRVMAAI 58 (59)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHh
Confidence 34579999999988888775
No 6
>d2jpoa1 a.39.2.1 (A:1-142) Moth pheromone-binding protein, PBP {Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]}
Probab=5.80 E-value=68 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=16.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHh
Q psy12571 23 HPEVTSVALRGLRLAVEECQHQF 45 (159)
Q Consensus 23 ~~~~~~~i~~g~~~~~~eC~~qF 45 (159)
+|++|.-+..+.+.++++|..+-
T Consensus 1 s~~~~~~~~~~f~q~~~~C~~e~ 23 (142)
T d2jpoa1 1 SPEIMKNLSNNFGKAMDQCKDEL 23 (142)
T ss_dssp CCSSCSCTHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhHhhh
Confidence 36666677777788888887653
No 7
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=5.47 E-value=1.3e+02 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.2
Q ss_pred cCcchHHHHHHHHHHH
Q psy12571 111 KHPEVTSVALRGLRLA 126 (159)
Q Consensus 111 ~~~~~~~~i~~g~~~~ 126 (159)
-++++|.++.+|++.+
T Consensus 43 G~~GlM~ava~ga~~~ 58 (170)
T d1rcua_ 43 GRDGVMELVSQGVREA 58 (170)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHhc
Confidence 4689999999998753
No 8
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.19 E-value=1.2e+02 Score=16.33 Aligned_cols=34 Identities=15% Similarity=-0.070 Sum_probs=19.6
Q ss_pred CCcHHHHHH------HhcCcchHHHHHHHHHHHHHHHHHH
Q psy12571 11 GLTKTQLDL------CYKHPEVTSVALRGLRLAVEECQHQ 44 (159)
Q Consensus 11 ~l~~~Q~~l------C~~~~~~~~~i~~g~~~~~~eC~~q 44 (159)
.||+.|... -..+|+.-.-..-|..+++.+.+-+
T Consensus 6 ~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~ 45 (57)
T d2e1oa1 6 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45 (57)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 367777653 2356666555555555566665544
No 9
>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase {Lingulodinium polyedrum [TaxId: 160621]}
Probab=5.03 E-value=1.3e+02 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=10.9
Q ss_pred CCCcHHHHHHHhc
Q psy12571 10 SGLTKTQLDLCYK 22 (159)
Q Consensus 10 ~~l~~~Q~~lC~~ 22 (159)
|.||++|..+|+-
T Consensus 114 p~ltk~qv~~ckg 126 (351)
T d1vpra1 114 PQLTKEQVAMCKG 126 (351)
T ss_dssp CBCCHHHHHHHTT
T ss_pred chhhHHHHHhhcC
Confidence 5689999999973
No 10
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.68 E-value=1.5e+02 Score=16.65 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=5.7
Q ss_pred CCcHHHHHH
Q psy12571 11 GLTKTQLDL 19 (159)
Q Consensus 11 ~l~~~Q~~l 19 (159)
+||++|+++
T Consensus 2 ~LT~rQ~~v 10 (71)
T d1jhfa1 2 ALTARQQEV 10 (71)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 467777653
Done!