RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12571
(159 letters)
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19
WNT proteins are known. Because of their insolubility
little is known about Wnt protein structure, but all
have 23 or 24 Cys residues whose spacing is highly
conserved. Signal transduction by Wnt proteins
(including the Wnt/beta-catenin, the Wnt/Ca++, and the
Wnt/polarity pathway) is mediated by receptors of the
Frizzled and LDL-receptor-related protein (LRP)
families.
Length = 308
Score = 73.0 bits (180), Expect = 4e-16
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 5 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 55
+C L GL++ Q LC ++P+V + G RL +EECQHQF RWNCS+L
Sbjct: 1 ICSKLPGLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTL 51
Score = 73.0 bits (180), Expect = 4e-16
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 94 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 144
+C L GL++ Q LC ++P+V + G RL +EECQHQF RWNCS+L
Sbjct: 1 ICSKLPGLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTL 51
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1.
Length = 305
Score = 59.6 bits (145), Expect = 3e-11
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 8 SLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 55
SL GL++ Q LC +P+V G + +EECQHQF RWNCS+L
Sbjct: 1 SLPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTL 48
Score = 59.6 bits (145), Expect = 3e-11
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 97 SLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 144
SL GL++ Q LC +P+V G + +EECQHQF RWNCS+L
Sbjct: 1 SLPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTL 48
>gnl|CDD|119366 cd06549, GH18_trifunctional, GH18 domain of an uncharacterized
family of bacterial proteins, which share a common
three-domain architecture: an N-terminal glycosyl
hydrolase family 18 (GH18) domain, a glycosyl
transferase family 2 domain, and a C-terminal
polysaccharide deacetylase domain.
Length = 298
Score = 29.7 bits (67), Expect = 0.60
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 59 NSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSL----SGLTKTQLD-LCYKHP 113
+ +L +S W K + L A A K + + L + Q D +
Sbjct: 54 AAAKAHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFE 113
Query: 114 EVTSVALRGLRLAVEECQHQFHKNRWNCS-SLITKNSNPHTSSLLKK 159
E+ + L + E + + + ++ ++ + +L +
Sbjct: 114 ELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALARN 160
Score = 27.0 bits (60), Expect = 4.5
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 12 LTKTQLD-LCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCS-SLITKNSNPHTSSLLK 69
L + Q D + E+ + L + E + + + ++ ++ + +L +
Sbjct: 100 LERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALAR 159
Query: 70 KFS 72
Sbjct: 160 NAD 162
>gnl|CDD|241037 cd12593, RRM_RBM11, RNA recognition motif in vertebrate
RNA-binding protein 11 (RBM11). This subfamily
corresponds to the RRM or RBM11, a novel
tissue-specific splicing regulator that is selectively
expressed in brain, cerebellum and testis, and to a
lower extent in kidney. RBM11 is localized in the
nucleoplasm and enriched in SRSF2-containing splicing
speckles. It may play a role in the modulation of
alternative splicing during neuron and germ cell
differentiation. RBM11 contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a region
lacking known homology at the C-terminus. The RRM of
RBM11 is responsible for RNA binding, whereas the
C-terminal region permits nuclear localization and
homodimerization. .
Length = 75
Score = 27.2 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 3 IAMCKSLSGLTKTQLDLCYKHPEVTSVA---LRGLRL 36
+ +CK G K+ +C+KH E A L G+RL
Sbjct: 31 VTICKDKEGKPKSFGFVCFKHSESVPYAIALLNGIRL 67
Score = 27.2 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 92 IAMCKSLSGLTKTQLDLCYKHPEVTSVA---LRGLRL 125
+ +CK G K+ +C+KH E A L G+RL
Sbjct: 31 VTICKDKEGKPKSFGFVCFKHSESVPYAIALLNGIRL 67
>gnl|CDD|201110 pfam00245, Alk_phosphatase, Alkaline phosphatase.
Length = 421
Score = 28.6 bits (64), Expect = 1.5
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 24/113 (21%)
Query: 31 LRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQ-- 88
L G L ++E +H ++ W+ + L+ +P + LL F+ D+
Sbjct: 181 LDGRNL-IQEWKHAGYQYVWDRTELLKAKDSPSVTPLLGLFA-----------DGDMPYE 228
Query: 89 -ARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQ--HQFHKNR 138
R A SL +T+ + L ++P +G L VE + H H+N
Sbjct: 229 IPRDPATDPSLKEMTEVAIRLLSRNP-------KGFFLMVEGGRIDHAHHEND 274
>gnl|CDD|220979 pfam11101, DUF2884, Protein of unknown function (DUF2884). Some
members in this bacterial family of proteins are
annotated as YggN which currently has no known function.
Length = 228
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 84 ASDLQARGIAMCKSLSGLTKTQLDLCYKHPE 114
+ L+A+ +C L GL + + L + PE
Sbjct: 190 SQALEAKADELCDRLEGLDEQEQQLQQRIPE 220
>gnl|CDD|222991 PHA03119, PHA03119, helicase-primase primase subunit; Provisional.
Length = 1085
Score = 26.8 bits (59), Expect = 6.9
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 27/127 (21%)
Query: 47 KNRWNCSSLITKNSNPH----TSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLT 102
++R N S I+KN L +K++ + + I MC LT
Sbjct: 400 RSRLNISDYISKNVICDVVVLNEKLGRKYAASKTYPIVNSLTAQ-SGGYIGMCDVAGALT 458
Query: 103 K-------------------TQLDLCYK---HPEVTSVALRGLRLAVEECQHQFHKNRWN 140
K +Q + +P ++V++ ++ A + HK W
Sbjct: 459 KRIEGIEKSFARRGWPSTITSQTQGIFSQHDNPSGSTVSVEAIKAANQANSINSHKPAWE 518
Query: 141 CSSLITK 147
SS IT+
Sbjct: 519 YSSSITR 525
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.128 0.396
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,077,837
Number of extensions: 569325
Number of successful extensions: 571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 12
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)