RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12571
         (159 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
          frizzled, fatty acylation, glycosylation, signaling
          protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
          laevis}
          Length = 316

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 12 LTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 55
          +    +     +   ++    G +  +EEC++QF   RWNC   
Sbjct: 4  VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPES 47



 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 101 LTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 144
           +    +     +   ++    G +  +EEC++QF   RWNC   
Sbjct: 4   VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPES 47


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 41/170 (24%)

Query: 1   MCIAMCKSLSGLTKTQLDLCYK-HPEVTSVALRG--LRLAVEECQHQFHKNRWNCSSLIT 57
           + +  C S   + +    L Y+  P  TS +     ++L +   Q +          L+ 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-------RRLLK 239

Query: 58  KNSNPHTSSLL-----------KKFSIVSSIHWSTKYASDLQARG------IAMCKSLSG 100
             S P+ + LL             F++   I  +T++              I++      
Sbjct: 240 --SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 101 LTKTQ-LDLCYKH---------PEVTSVALRGLRLAVEECQHQFHKNRWN 140
           LT  +   L  K+          EV +   R L +  E  +       W+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWD 345


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.030
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 68/187 (36%)

Query: 8   SLSGLTKTQL----DLCYKH-PE----------------VTS--VALRGLRLAVEEC--- 41
           S+S LT+ Q+    +    H P                 V+    +L GL L + +    
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399

Query: 42  ----QHQ--FHKNRWNCSS--L-ITKNSNP-HTSSLLKKFSIVSSIHWSTKYASDLQARG 91
               Q +  F + +   S+  L +     P H S LL        I        DL    
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVAS---PFH-SHLLV--PASDLI------NKDLVKNN 447

Query: 92  IAMCKSLSGL------TKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLI 145
           ++   +   +      T    DL        S++ R +   +           W      
Sbjct: 448 VSF--NAKDIQIPVYDTFDGSDLR---VLSGSISERIVDCIIRLPVK------W---ETT 493

Query: 146 TKNSNPH 152
           T+    H
Sbjct: 494 TQFKATH 500



 Score = 31.9 bits (72), Expect = 0.088
 Identities = 26/160 (16%), Positives = 45/160 (28%), Gaps = 40/160 (25%)

Query: 26  VTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWST-KYA 84
           + + + R L L+    +H           L+   S    S L ++F+    +   T  +A
Sbjct: 1   MDAYSTRPLTLSHGSLEHVL---------LVPTASFFIASQLQEQFN--KILPEPTEGFA 49

Query: 85  SD--------LQARGIAMCKSL-----SGLTKTQLDLCYKHPEVTSVALRG-------LR 124
           +D        L  + +    SL      G     L+LC    E  +  L G        +
Sbjct: 50  ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAK 107

Query: 125 LAVEECQHQFHKNRW------NCSSLITKNSNPHTSSLLK 158
           L  E                               S+L +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147


>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH,
           cell WALL, STR genomics, PSI-2, protein structure
           initiative; 1.80A {Bacillus anthracis}
          Length = 203

 Score = 30.4 bits (69), Expect = 0.19
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 58  KNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGI 92
           K       +   KF  + +++W  + A+ L   GI
Sbjct: 114 KLDTKVNGTPATKFKDLETLNWGKEKANILVELGI 148


>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer,
           NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
          Length = 245

 Score = 29.3 bits (65), Expect = 0.45
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 5/83 (6%)

Query: 46  HKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQ 105
           H +  +       +    + S +KK         S +         + + + L    K Q
Sbjct: 7   HHHHSSGLVPRGSHMETLSYSQIKKRKADFDEDISKRARQLPVGEQLPLSRLLQYSDKQQ 66

Query: 106 L-----DLCYKHPEVTSVALRGL 123
           L         KHP++       L
Sbjct: 67  LFTILLQCVEKHPDLARDIRGIL 89


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.128    0.396 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,188,283
Number of extensions: 110002
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 11
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)