RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12571
         (159 letters)



>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 145

 Score = 25.2 bits (55), Expect = 2.9
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 19  LCYKHPEVTSVALRGLRLAVEECQHQFHK---NRWNCSSLIT-KNSNPHTSSLLKKFSIV 74
           +   +P  +  +L  L   V+ C    H+    + NC    +   S PH +   K   +V
Sbjct: 51  MNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELV 110

Query: 75  SSIHWSTKYASDLQARGIA-MCKSL 98
            +  W+  + S  + + I      L
Sbjct: 111 QT--WAYAFRSSDKYQAIKDTMTIL 133


>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 177

 Score = 24.0 bits (52), Expect = 8.7
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 51 NCSSLI---TKNSNPHTSSLLKK----FSIVSSIHWSTKYASDLQARG 91
          N S      T N+ P  SSLLKK    F +V   +       +   R 
Sbjct: 44 NASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDCMETVMRA 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.128    0.396 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,176
Number of extensions: 21531
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 6
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)