BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12572
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
           Cysteine-Rich Domain Of Frizzled 8
          Length = 316

 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 161/349 (46%), Gaps = 70/349 (20%)

Query: 32  ISRGIDMGTKECQYQFRNRRWNCTLLKKSMKKVLQRGKLYSDLYGDIDSKETSFVNAVIS 91
           ++ G   G +EC+YQF   RWNC                                     
Sbjct: 22  VAVGAQNGIEECKYQFAWERWNCP------------------------------------ 45

Query: 92  AGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCEC 151
                TL  A   G         ++  ++ETSFV+A+ SAGV YTLT+ C+ G   NC C
Sbjct: 46  ---ESTLQLATHNG---------LRSATRETSFVHAISSAGVMYTLTRNCSMGDFDNCGC 93

Query: 152 GKIKQGKNLKPDNSNLPWKWEGCSDNLQYGLRKAKTFMNVGSLEMG-DLKSLTMHHNLEA 210
              + G+          W W GCSDN ++G R +K F  V  LE G D ++L   HN EA
Sbjct: 94  DDSRNGRI-----GGRGWVWGGCSDNAEFGERISKLF--VDGLETGQDARALMNLHNNEA 146

Query: 211 GRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRNVGNTLKKRFRSSIRVV-------P 263
           GRL + ++M+  CKCHG SGSC+++TCW  L  FR++GN LK +   ++++         
Sbjct: 147 GRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKLEMDKRKMRS 206

Query: 264 SNDGHSFVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGREC-----TMNSSAT 318
            N   +   I+         +L++ E SP++C +N + G  GT GREC      ++    
Sbjct: 207 GNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWER 266

Query: 319 ESCSHMCCGRGYKTDENIEYV--RCNCSFKFCCDVVCDTCAKKTFIHHC 365
            SC  +C   G + +E    +   CNC F +CC V C+ C +    H C
Sbjct: 267 RSCKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHFC 315


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 136 TLTKACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEG 173
           +LT A   G+  +CEC  I   +N   D++++  +W+G
Sbjct: 160 SLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDG 197


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,770,943
Number of Sequences: 62578
Number of extensions: 429349
Number of successful extensions: 1138
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 11
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)