Query psy12572
Match_columns 366
No_of_seqs 143 out of 779
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:47:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 100.0 2E-126 3E-131 931.9 25.8 305 6-366 46-356 (356)
2 smart00097 WNT1 found in Wnt-1 100.0 2E-116 4E-121 857.4 27.4 300 11-366 2-305 (305)
3 PF00110 wnt: wnt family; Int 100.0 6E-115 1E-119 849.2 11.1 304 7-366 1-310 (310)
4 PLN02277 H(+) -translocating i 27.5 53 0.0012 36.6 3.2 23 28-50 561-583 (730)
5 TIGR01104 V_PPase vacuolar-typ 26.8 53 0.0012 36.4 3.0 23 28-50 529-551 (697)
6 KOG4114|consensus 22.2 80 0.0017 25.0 2.4 41 7-50 20-62 (73)
7 PRK00733 hppA membrane-bound p 21.7 82 0.0018 34.8 3.2 24 28-51 504-527 (666)
8 PLN02255 H(+) -translocating i 21.1 80 0.0017 35.4 3.0 23 28-50 592-614 (765)
9 PF13085 Fer2_3: 2Fe-2S iron-s 19.5 71 0.0015 27.2 1.7 33 199-236 32-64 (110)
10 PF03030 H_PPase: Inorganic H+ 19.2 90 0.002 34.7 2.9 24 28-51 529-552 (682)
No 1
>KOG3913|consensus
Probab=100.00 E-value=1.6e-126 Score=931.95 Aligned_cols=305 Identities=42% Similarity=0.895 Sum_probs=290.8
Q ss_pred hccccchhccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCcccCCccc--chhhhhhhccccccCCCCCCCCcch
Q psy12572 6 VICKKTRRLKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLK--KSMKKVLQRGKLYSDLYGDIDSKET 83 (366)
Q Consensus 6 ~~C~~~~gL~~~Q~~lC~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~--~~f~~~l~~~~~~~~~~~~~gtREt 83 (366)
.+|+++|||+++|+++|++||++|++|.+|+++||+|||+||+++|||||+.+ ++|+++|++ |+||+
T Consensus 46 ~~C~~l~gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~~~~~~g~~l~~-----------g~REs 114 (356)
T KOG3913|consen 46 PLCDNLPGLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLDQLPVFGPLLSR-----------GTRET 114 (356)
T ss_pred cchhhccccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccchhhcc-----------cchHH
Confidence 47999999999999999999999999999999999999999999999999976 689999999 99999
Q ss_pred hhhhhhhhhhHHHHHHhhhcCCCCCCccCCCCcCCCcchhhhhhhhhcccccchhcccccCCcCccccCccccCCCCCCC
Q psy12572 84 SFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPD 163 (366)
Q Consensus 84 Afv~Ai~sAgv~~~itraCs~G~l~~C~C~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (366)
||||||+||||+|+|||||++|.|..||||+ .+.+.
T Consensus 115 AFv~AIssAgV~havtraCs~G~l~~CgCd~---------------------------------------~~~~~----- 150 (356)
T KOG3913|consen 115 AFVYAISSAGVAHAVTRACSQGNLESCGCDP---------------------------------------SPNGK----- 150 (356)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCCCCCcCCCC---------------------------------------CCCCC-----
Confidence 9999999999999999999999999999953 22221
Q ss_pred CCCCCCcccCCCCchhhhHHHHHhhhhccccccCchhHHHHhhhhhhhhHhhhcccccceeecCccCCcccceecccCCC
Q psy12572 164 NSNLPWKWEGCSDNLQYGLRKAKTFMNVGSLEMGDLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGP 243 (366)
Q Consensus 164 ~~~~~~~WgGCsdnv~~G~~~sr~Fld~~~e~~~~~~~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSC~~KTCW~~lp~ 243 (366)
.++++|+||||||||+||++|||+|||+ +|+.+|++++||||||+|||+||.++|+++||||||||||++||||++||+
T Consensus 151 ~~~~~w~WGGCsDnv~fG~~fsr~FlD~-re~~~d~r~lmnlHNNeaGR~av~~~m~~~CKCHGvSGSC~~KTCW~~lp~ 229 (356)
T KOG3913|consen 151 SGPEGWEWGGCSDNVDFGIRFSRKFLDA-REKRKDARALMNLHNNEAGRKAVKKNMRRECKCHGVSGSCTVKTCWKQLPD 229 (356)
T ss_pred CCCCCccccCCCCchHHHHHHHHHhccc-cccccCHHHHHHHhhhHHHHHHHHHhhhhcccccCccccchhhhHHhhCcc
Confidence 2356699999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcccccccccCCCCCC----cccCCCCCCCCCCCCeEEecCCCCccccCCCCCCCCCCCCcccCCCCCCC
Q psy12572 244 FRNVGNTLKKRFRSSIRVVPSNDGHS----FVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGRECTMNSSATE 319 (366)
Q Consensus 244 F~~vg~~Lk~kY~~A~~V~~~~~~~~----~~~~~~~~~~~~~~dLVY~~~SPdyC~~n~~~Gs~GT~GR~Cn~ts~~~~ 319 (366)
|++||+.||+||++|++|..++.+.. +.|..+.+++|++.||||+|+|||||++|+++||+||+||+||++|.+.|
T Consensus 230 Fr~vG~~Lk~KYd~A~~V~~~~~~~~~~~~~~~~~~~~~~~~~~dLVYle~SPdfC~~~~~~Gs~GT~GR~Cn~ts~g~d 309 (356)
T KOG3913|consen 230 FREVGDYLKEKYDGAIKVTVNNRGRRSAPALRPEKPRFKPPTETDLVYLEDSPDYCERNKKTGSLGTQGRECNKTSRGSD 309 (356)
T ss_pred HHHHHHHHHHHhhhheEEeeccCCccccccccccccccCCCCCCceEEecCCChhhccCccCCCCCCCCcccCCCCCCCC
Confidence 99999999999999999999887754 77777889999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCceEEEEEEEEeeCceeEeeeEEeCccccEEEEEEeeC
Q psy12572 320 SCSHMCCGRGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIHHCL 366 (366)
Q Consensus 320 ~C~~LCCGRGy~t~~~~~~e~C~CkF~WCC~V~C~~C~~~~~~~~C~ 366 (366)
+|++|||||||+|++++++|+|||||||||+|+|++|.+++++|+||
T Consensus 310 gC~~LCCGRGynt~~~~~~e~C~CkFhWCC~V~C~~C~~~~~v~tCk 356 (356)
T KOG3913|consen 310 GCDLLCCGRGYNTRRVEVVERCHCKFHWCCYVKCKECRERVEVYTCK 356 (356)
T ss_pred CCccccCCCCCceeEEEEEEecCCEEEEeeEEECcccccEEEeeecC
Confidence 99999999999999999999999999999999999999999999997
No 2
>smart00097 WNT1 found in Wnt-1.
Probab=100.00 E-value=1.6e-116 Score=857.36 Aligned_cols=300 Identities=44% Similarity=0.887 Sum_probs=280.5
Q ss_pred chhccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCcccCCccc--chhhhhhhccccccCCCCCCCCcchhhhhh
Q psy12572 11 TRRLKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLK--KSMKKVLQRGKLYSDLYGDIDSKETSFVNA 88 (366)
Q Consensus 11 ~~gL~~~Q~~lC~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~--~~f~~~l~~~~~~~~~~~~~gtREtAfv~A 88 (366)
++||+++|+++|+++|++|++|++|+++||+|||+||+++|||||+++ +.|+++|++ |+||+|||||
T Consensus 2 ~~~l~~~Q~~~C~~~~~~~~~v~~g~~~ai~ECq~QF~~~rWNCs~~~~~~~~~~~l~~-----------~trEtAfv~A 70 (305)
T smart00097 2 LPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDNASVFGKVLRQ-----------GTRETAFVYA 70 (305)
T ss_pred CcccCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCccccccccc-----------ccchHHHHHH
Confidence 679999999999999999999999999999999999999999999864 578899998 9999999999
Q ss_pred hhhhhHHHHHHhhhcCCCCCCccCCCCcCCCcchhhhhhhhhcccccchhcccccCCcCccccCccccCCCCCCCCCCCC
Q psy12572 89 VISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPDNSNLP 168 (366)
Q Consensus 89 i~sAgv~~~itraCs~G~l~~C~C~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (366)
|+||||+|+||+||++|.|.+|+|+ ..+.+. .+.++
T Consensus 71 i~sAgv~~~itraCs~G~l~~C~Cd---------------------------------------~~~~~~-----~~~~~ 106 (305)
T smart00097 71 ISSAGVAHAVTRACSEGELDSCGCD---------------------------------------YRKRGR-----AGGRG 106 (305)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCC---------------------------------------CCCCCC-----CCCCC
Confidence 9999999999999999999999994 322221 12347
Q ss_pred CcccCCCCchhhhHHHHHhhhhccccccCchhHHHHhhhhhhhhHhhhcccccceeecCccCCcccceecccCCChhhhH
Q psy12572 169 WKWEGCSDNLQYGLRKAKTFMNVGSLEMGDLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRNVG 248 (366)
Q Consensus 169 ~~WgGCsdnv~~G~~~sr~Fld~~~e~~~~~~~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSC~~KTCW~~lp~F~~vg 248 (366)
|+||||+|||+||++||++|||+ ++..+|+++|||||||+|||+||.++|+++||||||||||++||||++||+|++||
T Consensus 107 w~WgGCsdnv~~G~~~s~~FlD~-~~~~~d~r~lmnlHNn~aGR~~v~~~~~~~CkCHGvSGSC~~kTCw~~l~~Fr~Ig 185 (305)
T smart00097 107 WKWGGCSDNIDFGIRFSREFVDA-RERGKDARALMNLHNNEAGRLAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRKVG 185 (305)
T ss_pred cccCCCCccHHHHHHHHHHHHhc-ccccccHHHHHHHhhhHHHHHHHHHHHHHhccccCccCCccccchHhhCCCHHHHH
Confidence 99999999999999999999999 88878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccCCCCCC--cccCCCCCCCCCCCCeEEecCCCCccccCCCCCCCCCCCCcccCCCCCCCCCccccc
Q psy12572 249 NTLKKRFRSSIRVVPSNDGHS--FVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGRECTMNSSATESCSHMCC 326 (366)
Q Consensus 249 ~~Lk~kY~~A~~V~~~~~~~~--~~~~~~~~~~~~~~dLVY~~~SPdyC~~n~~~Gs~GT~GR~Cn~ts~~~~~C~~LCC 326 (366)
+.||+||++|++|.+.+++.. +.|..+..++|+++||||||+|||||++|+.+||+||+||+||++|.++++|++|||
T Consensus 186 ~~Lk~kY~~A~~V~~~~~~~~~~l~~~~~~~~~~~~~dLVYle~SPdyC~~n~~~G~~GT~GR~Cn~~s~~~~~C~~LCC 265 (305)
T smart00097 186 DYLKEKYDGASEVEVDKRGTNKAPVPKNSTFKPPTETDLVYLESSPDFCEKNPKTGSLGTQGRQCNKTSKGLDGCDLLCC 265 (305)
T ss_pred HHHHHHhccceEeeecccccccccccCCccCCCCCCCCeEEeCCCCcccccCCCcCCCCCCCCccCCCCCCCCChhhcCC
Confidence 999999999999987766543 566666677889999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEEeeCceeEeeeEEeCccccEEEEEEeeC
Q psy12572 327 GRGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIHHCL 366 (366)
Q Consensus 327 GRGy~t~~~~~~e~C~CkF~WCC~V~C~~C~~~~~~~~C~ 366 (366)
||||+|++++++++|||||+|||+|+||+|.+++++|+|+
T Consensus 266 gRGy~t~~~~~~~~C~CkF~WCC~V~C~~C~~~~~~~~C~ 305 (305)
T smart00097 266 GRGYNTRTVEVVERCNCKFHWCCYVKCKQCRETVEKHTCK 305 (305)
T ss_pred CCCceeEEEEEEEecCCEEEEeeEEECccCCcEEEEEEeC
Confidence 9999999999999999999999999999999999999997
No 3
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=100.00 E-value=6e-115 Score=849.24 Aligned_cols=304 Identities=44% Similarity=0.956 Sum_probs=206.6
Q ss_pred ccccchhccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCcccCCccc--chhhh-hhhccccccCCCCCCCCcch
Q psy12572 7 ICKKTRRLKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLK--KSMKK-VLQRGKLYSDLYGDIDSKET 83 (366)
Q Consensus 7 ~C~~~~gL~~~Q~~lC~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~--~~f~~-~l~~~~~~~~~~~~~gtREt 83 (366)
||.+++||+++|++||+++|++|++|++|+++||+|||+||+++|||||+++ +.|++ +|.+ |+||+
T Consensus 1 iC~~~~gL~~~Q~~~C~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~f~~~~~~~-----------gtrE~ 69 (310)
T PF00110_consen 1 ICDKIPGLTKRQRRLCRRNPDLMPSIAEGAKMAIEECQHQFRNRRWNCSTVDNNPVFGPPILKK-----------GTRET 69 (310)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHTTTSSS-----T-THHHH-TT--S-------------HHH
T ss_pred CCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccccc-----------Ccccc
Confidence 7999999999999999999999999999999999999999999999999987 47887 8888 99999
Q ss_pred hhhhhhhhhhHHHHHHhhhcCCCCCCccCCCCcCCCcchhhhhhhhhcccccchhcccccCCcCccccCccccCCCCCCC
Q psy12572 84 SFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPD 163 (366)
Q Consensus 84 Afv~Ai~sAgv~~~itraCs~G~l~~C~C~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (366)
||||||+||||+|+||+||++|.|..|+|+. ...+.
T Consensus 70 Afv~Ai~sAgv~~~itraCs~G~l~~C~C~~---------------------------------------~~~~~----- 105 (310)
T PF00110_consen 70 AFVYAISSAGVAHSITRACSRGKLKSCGCDR---------------------------------------NPRGS----- 105 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-SS--------------------------------------------TTTTS-----
T ss_pred eeeEhhhcCchHHHHHHHhhcccCCcCCCcc---------------------------------------ccccc-----
Confidence 9999999999999999999999999999942 22211
Q ss_pred CCCCCCcccCCCCchhhhHHHHHhhhhccccccCchhHHHHhhhhhhhhHhhhcccccceeecCccCCcccceecccCCC
Q psy12572 164 NSNLPWKWEGCSDNLQYGLRKAKTFMNVGSLEMGDLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGP 243 (366)
Q Consensus 164 ~~~~~~~WgGCsdnv~~G~~~sr~Fld~~~e~~~~~~~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSC~~KTCW~~lp~ 243 (366)
..+..|+||||+|||.||++||++|||+ ++...+++.+||+|||+|||+||.++|+++||||||||||++||||++||+
T Consensus 106 ~~~~~~~wggCsdni~~G~~~sr~Fld~-~~~~~~~~~~mn~HNn~aGR~~v~~~~~~~CkCHGvSGSC~~ktCw~~l~~ 184 (310)
T PF00110_consen 106 SSQNTWQWGGCSDNIKFGIKFSRRFLDA-REKGSDARSLMNLHNNEAGRKAVKKNMKKKCKCHGVSGSCTVKTCWRSLPP 184 (310)
T ss_dssp EEETTEEE-S----HHHHHHHHHHHHHH-H--SSSHHHHHHHHHHHHHHHHHHHT-EEEEEE-SGGG-TTSEEEEEE---
T ss_pred ccccccccCCcccccccchHHHHHHHHh-hhhhhhhhhhhhhhhhhhhhhhhcccccceEccccccCCCcceEEEEcCCc
Confidence 2234599999999999999999999999 888889999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhcccccccccCCCCCCcccC---CCCCCCCCCCCeEEecCCCCccccCCCCCCCCCCCCcccCCCCCCCC
Q psy12572 244 FRNVGNTLKKRFRSSIRVVPSNDGHSFVPI---SKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGRECTMNSSATES 320 (366)
Q Consensus 244 F~~vg~~Lk~kY~~A~~V~~~~~~~~~~~~---~~~~~~~~~~dLVY~~~SPdyC~~n~~~Gs~GT~GR~Cn~ts~~~~~ 320 (366)
|++||+.|++||++|++|.+.+.+..+.+. ....++|+.+||||+++|||||++|+++||+||+||+||.++.++++
T Consensus 185 f~~Ig~~Lk~kY~~A~~v~~~~~~~~~~~~~~~~~~~~~~~~~~LvY~~~SPdyC~~d~~~G~~GT~GR~C~~~~~~~~~ 264 (310)
T PF00110_consen 185 FREIGDYLKEKYDSAVKVKPNNNGNRSKPSPRKNKRFKPPTSTDLVYLEKSPDYCEPDPSTGSLGTRGRECNKTSSGPDS 264 (310)
T ss_dssp HHHHHHHHHHHHHT-EE-----------------HHHHTS-SSS-EE-S----TTSEETTTTEE-STT-EE----THHTH
T ss_pred HHHHHHHHHHHhhccccccccccccccccccccccccCCCCCceEEEECCCCcceeeccccccCcccccccCCCCCCCCC
Confidence 999999999999999999988776554433 22346789999999999999999999999999999999999999999
Q ss_pred CcccccCCCceEEEEEEEEeeCceeEeeeEEeCccccEEEEEEeeC
Q psy12572 321 CSHMCCGRGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIHHCL 366 (366)
Q Consensus 321 C~~LCCGRGy~t~~~~~~e~C~CkF~WCC~V~C~~C~~~~~~~~C~ 366 (366)
|+.|||||||+|++++++++|||||+|||+|+|++|++++++|+||
T Consensus 265 C~~LCCGrGy~t~~~~~~~~CnCkF~WCC~V~C~~C~~~~~~~~Ck 310 (310)
T PF00110_consen 265 CDNLCCGRGYRTRTEEVEEKCNCKFHWCCEVKCDTCKKTVTVYTCK 310 (310)
T ss_dssp HHHHTGT-EEEEEEEEEEEE-S-B--SSS--B--EEEEEEEEEEE-
T ss_pred CceeEcCCccceEEEEEEeeECCEEEeeeEEECCcCcEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999997
No 4
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=27.52 E-value=53 Score=36.59 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|.+|.+++...++|+++|||..
T Consensus 561 ~m~AVg~aA~~mVeEVRRQFrei 583 (730)
T PLN02277 561 ACAAVGRTAQEVVNEVRRQFAER 583 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999974
No 5
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=26.79 E-value=53 Score=36.38 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|.+|.+++...++|+++|||..
T Consensus 529 ~m~AVg~aA~~mV~EVRRQFrei 551 (697)
T TIGR01104 529 TMKSVGRAALKMVEEVRRQFNTI 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999964
No 6
>KOG4114|consensus
Probab=22.22 E-value=80 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=31.3
Q ss_pred ccccchhccHHHHHHHhcCchh--HHHHHHHHHHHHHHHHHhhccC
Q psy12572 7 ICKKTRRLKARLLEICKNEPAV--LFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 7 ~C~~~~gL~~~Q~~lC~~~p~~--m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|-.+.+-++ +-|..+|++ ++..-.+...|..||.++.-+.
T Consensus 20 ~Cv~v~~ks~---reCldn~~~~~vPeeC~al~~af~dCKRslvDm 62 (73)
T KOG4114|consen 20 DCVMVERKSP---RECLDNPELKDVPEECIALMKAFLDCKRSLVDM 62 (73)
T ss_pred cceeeecCCH---HHHhcCCccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 4666555554 458999998 8888899999999999886543
No 7
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=21.69 E-value=82 Score=34.84 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCc
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNRR 51 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~R 51 (366)
.|.+|.+++...++|+++|||...
T Consensus 504 ~m~AVg~aA~~mV~EVRrQFre~p 527 (666)
T PRK00733 504 AMTAVGRAAGAMVEEVRRQFREIP 527 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 588999999999999999999764
No 8
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=21.07 E-value=80 Score=35.39 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|.+|.+++...++|+++|||..
T Consensus 592 ~m~AVg~aA~~mV~EVRRQFrei 614 (765)
T PLN02255 592 TMKSVGSAALKMVEEVRRQFNTI 614 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999974
No 9
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=19.46 E-value=71 Score=27.21 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=20.5
Q ss_pred hhHHHHhhhhhhhhHhhhcccccceeecCccCCcccce
Q psy12572 199 LKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRT 236 (366)
Q Consensus 199 ~~~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSC~~KT 236 (366)
+..|...+++.-+-.+.+ -.|+ ||+-|||+++.
T Consensus 32 Ld~L~~Ik~~~D~sLafr----~sCr-~giCGsCam~I 64 (110)
T PF13085_consen 32 LDALNYIKEEQDPSLAFR----YSCR-SGICGSCAMRI 64 (110)
T ss_dssp HHHHHHHHHHT-TT--B------SSS-SSSSSTTEEEE
T ss_pred HHHHHHHHhccCCCeEEE----ecCC-CCCCCCCEEEE
Confidence 455667777766666554 3455 89999999975
No 10
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=19.19 E-value=90 Score=34.66 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCc
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNRR 51 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~R 51 (366)
.|.+|.+++..-++|.++|||...
T Consensus 529 ~m~aVg~aA~~mV~EvRrQFre~p 552 (682)
T PF03030_consen 529 TMKAVGRAAGKMVEEVRRQFREIP 552 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 488999999999999999999864
Done!