Query psy12572
Match_columns 366
No_of_seqs 143 out of 779
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:47:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 6E-115 2E-119 848.4 15.6 287 24-366 14-316 (316)
2 2cmp_A G1P, terminase small su 24.3 18 0.00063 26.7 0.3 18 11-28 6-23 (63)
3 2oq9_A Minicollagen-5; disulfi 23.0 27 0.00093 21.0 0.8 12 318-329 14-25 (26)
4 4a01_A Proton pyrophosphatase; 16.6 71 0.0024 34.3 2.9 23 28-50 593-615 (766)
5 3tvj_I Protease inhibitor SGPI 16.1 40 0.0014 22.7 0.5 17 221-237 18-36 (38)
6 4f0a_B Protein WNT-8, XWNT-8; 15.6 38 0.0013 32.6 0.5 31 117-147 59-89 (316)
7 4av3_A K(+)-stimulated pyropho 13.8 54 0.0019 35.1 1.1 23 28-50 571-593 (735)
8 2lfw_B NEPR anti sigma factor; 12.3 77 0.0026 23.5 1.2 18 245-262 26-43 (62)
9 3zqp_A Terminase small subunit 11.2 52 0.0018 28.8 0.0 28 12-39 23-50 (164)
10 2jry_A R11.6, I-superfamily co 10.6 1.1E+02 0.0038 21.3 1.5 13 166-178 30-42 (46)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=6.3e-115 Score=848.42 Aligned_cols=287 Identities=36% Similarity=0.739 Sum_probs=258.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhccCcccCCcccc-hhhh-hhhccccccCCCCCCCCcchhhhhhhhhhhHHHHHHhh
Q psy12572 24 NEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLKK-SMKK-VLQRGKLYSDLYGDIDSKETSFVNAVISAGVTYTLTKA 101 (366)
Q Consensus 24 ~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~-~f~~-~l~~~~~~~~~~~~~gtREtAfv~Ai~sAgv~~~itra 101 (366)
+||++|++|++|+++||+|||+||+++|||||.... .|++ +|++ |+||+||||||+||||+|+||||
T Consensus 14 ~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~~~~~~~~~~l~~-----------g~REtAFv~AissAgv~~avtra 82 (316)
T 4f0a_B 14 AYLTYSASVAVGAQNGIEECKYQFAWERWNCPESTLQLATHNGLRS-----------ATRETSFVHAISSAGVMYTLTRN 82 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCCTTHHHHCTTCCS-----------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCccccCCcccccC-----------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999997653 4555 5777 99999999999999999999999
Q ss_pred hcCCCCCCccCCCCcCCCcchhhhhhhhhcccccchhcccccCCcCccccCccccCCCCCCCCCCCCCcccCCCCchhhh
Q psy12572 102 CTKGSLLNCECGKIKQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEGCSDNLQYG 181 (366)
Q Consensus 102 Cs~G~l~~C~C~~~~~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WgGCsdnv~~G 181 (366)
|++|.|..|+|+ ....+. ..+++|+||||||||+||
T Consensus 83 Cs~G~l~~C~Cd---------------------------------------~~~~~~-----~~~~~w~WgGCsdnv~~G 118 (316)
T 4f0a_B 83 CSMGDFDNCGCD---------------------------------------DSRNGR-----IGGRGWVWGGCSDNAEFG 118 (316)
T ss_dssp HHTTTCSSCCCC---------------------------------------CTTTTS-----EEETTEEECSCCCCHHHH
T ss_pred HhCCCCCCCCCC---------------------------------------CCCCCC-----CcccCceeCCccchhHHH
Confidence 999999999994 322221 113579999999999999
Q ss_pred HHHHHhhhhccccccCchhHHHHhhhhhhhhHhhhcccccceeecCccCCcccceecccCCChhhhHHHHHHhccccccc
Q psy12572 182 LRKAKTFMNVGSLEMGDLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRNVGNTLKKRFRSSIRV 261 (366)
Q Consensus 182 ~~~sr~Fld~~~e~~~~~~~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSC~~KTCW~~lp~F~~vg~~Lk~kY~~A~~V 261 (366)
++||++|||+ +|..+|++++||||||+|||+||.++|+++||||||||||++||||++||+|++||+.||+||++|++|
T Consensus 119 ~~fsr~F~D~-~e~~~d~r~lmnlHNn~aGR~~v~~~m~~~CKCHGvSGSCt~KTCW~~lp~Fr~VG~~LK~kyd~A~~V 197 (316)
T 4f0a_B 119 ERISKLFVDG-LETGQDARALMNLHNNEAGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKIKHDQALKL 197 (316)
T ss_dssp HHHHHHHHHH-HCCSSSHHHHHHHHHHHHHHHHHHHTCEEEEEECSGGGCTTSEEEEEECCCHHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHhcc-ccccccHHHHHHhhchHHHHHHHHhcCeeeeecCCccccccceehcccCCCHHHHHHHHHHHhhhheEe
Confidence 9999999999 898899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC----C---CcccCCCCCCCCCCCCeEEecCCCCccccCCCCCCCCCCCCcccCCCCCC-----CCCcccc--cC
Q psy12572 262 VPSNDG----H---SFVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGRECTMNSSAT-----ESCSHMC--CG 327 (366)
Q Consensus 262 ~~~~~~----~---~~~~~~~~~~~~~~~dLVY~~~SPdyC~~n~~~Gs~GT~GR~Cn~ts~~~-----~~C~~LC--CG 327 (366)
.+.+.. + .+.|....+++|.++||||||+|||||++|+++||+||+||+||++|.|+ |||++|| ||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~k~p~~~dLVYle~SPdfC~~n~~~Gs~GT~GR~Cn~tS~g~s~~~~dgCdlLC~~CG 277 (316)
T 4f0a_B 198 EMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKRLCTDCG 277 (316)
T ss_dssp CC-------------CHHHHHHHHTSCSSSCEECSCCCCTTSEETTTTEECSTTCEECCCCTTCCHHHHTHHHHHTGGGT
T ss_pred eecccccccccccccccccccccCCCCCCCeEEeCCCCcccccCCCCCCCCCCCcccCCCCCCCcCCCCCCHHHHHHhcC
Confidence 876531 1 12222233577899999999999999999999999999999999999999 9999999 99
Q ss_pred CCceEEEEEEEEeeCceeEeeeEEeCccccEEEEEEeeC
Q psy12572 328 RGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIHHCL 366 (366)
Q Consensus 328 RGy~t~~~~~~e~C~CkF~WCC~V~C~~C~~~~~~~~C~ 366 (366)
|||+|++++++|+|||||||||+|+|++|.+++++|+|.
T Consensus 278 RGy~t~~~~~~erC~CkF~WCC~V~C~~C~~~~~~~~C~ 316 (316)
T 4f0a_B 278 LRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHFCA 316 (316)
T ss_dssp CCEEEEEEEEEEECSCBCCSSSCCBCCEEEEEEEEEEEC
T ss_pred CceeEEEEEEEEeeCCEEEeeeEEECCcCCeEEEEEEeC
Confidence 999999999999999999999999999999999999994
No 2
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=24.33 E-value=18 Score=26.69 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=12.8
Q ss_pred chhccHHHHHHHhcCchh
Q psy12572 11 TRRLKARLLEICKNEPAV 28 (366)
Q Consensus 11 ~~gL~~~Q~~lC~~~p~~ 28 (366)
+..||++|+.||..+..-
T Consensus 6 ~~~LT~kQ~~F~~~Yi~~ 23 (63)
T 2cmp_A 6 EPKLSPKQERFIEEYFIN 23 (63)
T ss_dssp --CCCHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHhc
Confidence 356999999999865443
No 3
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=23.00 E-value=27 Score=21.03 Aligned_cols=12 Identities=50% Similarity=1.265 Sum_probs=9.5
Q ss_pred CCCCcccccCCC
Q psy12572 318 TESCSHMCCGRG 329 (366)
Q Consensus 318 ~~~C~~LCCGRG 329 (366)
..+|..-||||.
T Consensus 14 mascapqccgr~ 25 (26)
T 2oq9_A 14 MASCAPQCCGRX 25 (26)
T ss_dssp CTTTTTTTTCC-
T ss_pred HHhccHHhhcCC
Confidence 468999999995
No 4
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=16.65 E-value=71 Score=34.32 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|.+|.+++...++|.++|||..
T Consensus 593 tm~AVg~AA~~mV~EVRRQFrei 615 (766)
T 4a01_A 593 TMKSVGSAALKMVEEVRRQFNTI 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999974
No 5
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=16.08 E-value=40 Score=22.69 Aligned_cols=17 Identities=41% Similarity=0.929 Sum_probs=14.3
Q ss_pred cceeec--CccCCccccee
Q psy12572 221 TECKCH--GFSGSCTLRTC 237 (366)
Q Consensus 221 ~~CKCH--GvSGSC~~KTC 237 (366)
..|.|- |.+.+|+.|.|
T Consensus 18 NtC~C~~dG~~a~CT~k~C 36 (38)
T 3tvj_I 18 NTCRCGSDGKSAVCTKLWC 36 (38)
T ss_dssp EEEEECTTSSCEEEECCEE
T ss_pred ceeECCCCCceeEeecccC
Confidence 368886 88999999988
No 6
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=15.63 E-value=38 Score=32.56 Aligned_cols=31 Identities=52% Similarity=0.834 Sum_probs=27.5
Q ss_pred CCCcchhhhhhhhhcccccchhcccccCCcC
Q psy12572 117 QDSKETSFVNAVISAGVTYTLTKACTKGSLL 147 (366)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~a~~~~~~~ 147 (366)
.++.|.+|+-|.+++++.++.+.||+.|.+.
T Consensus 59 ~g~REtAFv~AissAgv~~avtraCs~G~l~ 89 (316)
T 4f0a_B 59 SATRETSFVHAISSAGVMYTLTRNCSMGDFD 89 (316)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999999988764
No 7
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=13.77 E-value=54 Score=35.14 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q psy12572 28 VLFEISRGIDMGTKECQYQFRNR 50 (366)
Q Consensus 28 ~m~~i~~G~~~ai~ECq~QF~~~ 50 (366)
.|.+|.+++...++|.++|||..
T Consensus 571 tm~AVgrAA~~mV~EVRRQFrei 593 (735)
T 4av3_A 571 LISAVTKAAMKMVDEIRRQAREI 593 (735)
T ss_dssp HHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 38999999999999999999963
No 8
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=12.29 E-value=77 Score=23.47 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.3
Q ss_pred hhhHHHHHHhcccccccc
Q psy12572 245 RNVGNTLKKRFRSSIRVV 262 (366)
Q Consensus 245 ~~vg~~Lk~kY~~A~~V~ 262 (366)
++||..|+..|+..+.-.
T Consensus 26 ~~Ig~~LR~~Yd~vv~E~ 43 (62)
T 2lfw_B 26 RDMGAALRSAYQKTIEEQ 43 (62)
T ss_dssp TTHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 699999999999887543
No 9
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=11.18 E-value=52 Score=28.77 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=0.0
Q ss_pred hhccHHHHHHHhcCchhHHHHHHHHHHH
Q psy12572 12 RRLKARLLEICKNEPAVLFEISRGIDMG 39 (366)
Q Consensus 12 ~gL~~~Q~~lC~~~p~~m~~i~~G~~~a 39 (366)
+.||++|+.||..|..-.-...+|+..|
T Consensus 23 ~~LT~KQ~~F~~eYi~~~~Nat~Aa~kA 50 (164)
T 3zqp_A 23 PKLSPKQERFIEEYFINDMNATKAAIAA 50 (164)
T ss_dssp ----------------------------
T ss_pred ccCCHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 5699999999987765541223444343
No 10
>2jry_A R11.6, I-superfamily conotoxin R11A; IOTA-conotoxin; HET: HYP DPN; NMR {Conus radiatus} PDB: 2p4l_A* 2jtu_A*
Probab=10.63 E-value=1.1e+02 Score=21.31 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.6
Q ss_pred CCCCcccCCCCch
Q psy12572 166 NLPWKWEGCSDNL 178 (366)
Q Consensus 166 ~~~~~WgGCsdnv 178 (366)
...|.|.|||-+.
T Consensus 30 sTs~i~pgcst~~ 42 (46)
T 2jry_A 30 STNWILPGCSTSS 42 (46)
T ss_dssp CCSSSSCSCCCCT
T ss_pred eeeEEecCCcccc
Confidence 3679999999765
Done!