RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12572
(366 letters)
>gnl|CDD|215724 pfam00110, wnt, wnt family. Wnt genes have been identified in
vertebrates and invertebrates but not in plants,
unicellular eukaryotes or prokaryotes. In humans, 19 WNT
proteins are known. Because of their insolubility little
is known about Wnt protein structure, but all have 23 or
24 Cys residues whose spacing is highly conserved.
Signal transduction by Wnt proteins (including the
Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity
pathway) is mediated by receptors of the Frizzled and
LDL-receptor-related protein (LRP) families.
Length = 308
Score = 324 bits (833), Expect = e-110
Identities = 136/363 (37%), Positives = 202/363 (55%), Gaps = 58/363 (15%)
Query: 7 ICKKTRRLKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLKKSMKKVLQ 66
IC K L + +C+ P V+ + G +G +ECQ+QFRNRRWNC+ L S
Sbjct: 1 ICSKLPGLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTLDSS------ 54
Query: 67 RGKLYSDLYGDIDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVN 126
++G I +K+ ++ET+FV
Sbjct: 55 ------SVFGKI------------------------------------LKRGTRETAFVY 72
Query: 127 AVISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEGCSDNLQYGLRKAK 186
A+ SAGV + +T+AC++G+L +C C + ++G++ W+W GCSDN+++G+R ++
Sbjct: 73 AISSAGVVHAVTRACSEGNLESCGCDRSRRGRSGPGG-----WEWGGCSDNIKFGIRFSR 127
Query: 187 TFMNVGSLEMG-DLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFR 245
F++ + E G D ++L HN EAGR + ++M+TECKCHG SGSCTL+TCW+ L FR
Sbjct: 128 EFLD--ARERGRDARALMNLHNNEAGRKAVKRNMKTECKCHGVSGSCTLKTCWKQLPDFR 185
Query: 246 NVGNTLKKRFRSSIRVVPSNDGHSFVPISKTV--KPPDKMDLVYSEISPNFCTENKTTGS 303
VG+ LK+++ +I+V +N G + K KPP DLVY E SP++C N + GS
Sbjct: 186 EVGDLLKEKYDGAIKVEVNNRGKRRRLVRKNPKSKPPTSTDLVYLEDSPDYCERNPSLGS 245
Query: 304 LGTYGRECTMNSSATESCSHMCCGRGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIH 363
LGT GREC SS T+ C +CCGRGY T + RCNC F +CC V C TC ++ ++
Sbjct: 246 LGTRGRECNKTSSGTDGCDLLCCGRGYNTRTVVVVERCNCKFHWCCYVKCKTCRERVEVY 305
Query: 364 HCL 366
C
Sbjct: 306 TCK 308
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1.
Length = 305
Score = 301 bits (774), Expect = e-101
Identities = 135/362 (37%), Positives = 185/362 (51%), Gaps = 62/362 (17%)
Query: 10 KTRRLKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLL--KKSMKKVLQR 67
L R +C+ P V+ ++ G G +ECQ+QFR RRWNC+ L KVL++
Sbjct: 1 SLPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDNASVFGKVLRQ 60
Query: 68 GKLYSDLYGDIDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNA 127
G ++ET+FV A
Sbjct: 61 G--------------------------------------------------TRETAFVYA 70
Query: 128 VISAGVTYTLTKACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEGCSDNLQYGLRKAKT 187
+ SAGV + +T+AC++G L +C C K+G+ WKW GCSDN+ +G+R ++
Sbjct: 71 ISSAGVAHAVTRACSEGELDSCGCDYRKRGRAGGRG-----WKWGGCSDNIDFGIRFSRE 125
Query: 188 FMNVGSLEMG-DLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRN 246
F V + E G D ++L HN EAGRL + K+M+ ECKCHG SGSCT++TCW L FR
Sbjct: 126 F--VDARERGKDARALMNLHNNEAGRLAVKKTMKRECKCHGVSGSCTVKTCWLQLPDFRK 183
Query: 247 VGNTLKKRFRSSIRVVPSNDGHSF--VPISKTVKPPDKMDLVYSEISPNFCTENKTTGSL 304
VG+ LK+++ + V G + VP + T KPP + DLVY E SP+FC +N TGSL
Sbjct: 184 VGDYLKEKYDGASEVEVDKRGTNKAPVPKNSTFKPPTETDLVYLESSPDFCEKNPKTGSL 243
Query: 305 GTYGRECTMNSSATESCSHMCCGRGYKTDENIEYVRCNCSFKFCCDVVCDTCAKKTFIHH 364
GT GR+C S + C +CCGRGY T RCNC F +CC V C C + H
Sbjct: 244 GTQGRQCNKTSKGLDGCDLLCCGRGYNTRTVEVVERCNCKFHWCCYVKCKQCRETVEKHT 303
Query: 365 CL 366
C
Sbjct: 304 CK 305
>gnl|CDD|217824 pfam03974, Ecotin, Ecotin. Ecotin is a broad range serine protease
inhibitor, which forms homodimers. The C-terminal region
contains the dimerisation motif. Interestingly, the
binding sites show a fluidity of protein contacts
binding sites show a fluidity of protein contacts
derived from ecotin's innate flexibility in fitting
itself to proteases while.
Length = 128
Score = 29.9 bits (68), Expect = 0.91
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 213 LVIGKSMQTECKCHGFSGSCTLRT 236
L+IGK+++ +C + G +T
Sbjct: 34 LIIGKTLEVDCNRYRLGGELEEKT 57
>gnl|CDD|212126 cd10815, GH38N_AMII_EcMngB_like, N-terminal catalytic domain of
Escherichia coli alpha-mannosidase MngB and its
bacterial homologs; glycoside hydrolase family 38
(GH38). The bacterial subfamily is represented by
Escherichia coli alpha-mannosidase MngB, which is
encoded by the mngB gene (previously called ybgG). MngB
exhibits alpha-mannosidase activity that converts
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. A divalent metal ion is required for its
activity.
Length = 270
Score = 28.7 bits (65), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 177 NLQYGLRKAKTF---MNVGSL 194
NL YG++ A+ M +G L
Sbjct: 99 NLLYGIKDARKLGGYMKIGYL 119
>gnl|CDD|237176 PRK12703, PRK12703, tRNA 2'-O-methylase; Reviewed.
Length = 339
Score = 28.3 bits (63), Expect = 6.0
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 248 GNTLKKRFRSSIRVVPSNDGHSFVPISKTVK-PPDK---MDLVYSE 289
G L+K F I VVP G K VK PD+ +DL+
Sbjct: 144 GKELEKSFEGKINVVPMERG-------KLVKIIPDEDQCLDLLKKY 182
>gnl|CDD|240601 cd12918, VKOR_arc, Vitamin K epoxide reductase family in archaea
and some bacteria. This family includes vitamin K
epoxide reductase (VKOR) mostly present in archaea and
some bacteria. VKOR (also named VKORC1) is an integral
membrane protein that catalyzes the reduction of vitamin
K 2,3-epoxide and vitamin K to vitamin K hydroquinone,
an essential co-factor subsequently used in the
gamma-carboxylation of glutamic acid residues in blood
coagulation enzymes. All homologs of VKOR contain an
active site CXXC motif, which is switched between
reduced and disulfide-bonded states during the reaction
cycle. In some bacterial homologs, the VKOR domain is
fused with domains of the thioredoxin family of
oxidoreductases which may function as redox partners in
initiating the reduction cascade.
Length = 126
Score = 26.9 bits (60), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 84 SFVNAVISAGVTYTL-----TKACTKGSLLNCE 111
S V + SA +TY ACT ++NCE
Sbjct: 7 SLVGLLASAYLTYEHYLKRPPLACTISGVINCE 39
Score = 26.9 bits (60), Expect = 9.6
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 123 SFVNAVISAGVTYTL-----TKACTKGSLLNCE 150
S V + SA +TY ACT ++NCE
Sbjct: 7 SLVGLLASAYLTYEHYLKRPPLACTISGVINCE 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,938,098
Number of extensions: 1496932
Number of successful extensions: 992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 14
Length of query: 366
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 268
Effective length of database: 6,590,910
Effective search space: 1766363880
Effective search space used: 1766363880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)