RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12572
(366 letters)
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
frizzled, fatty acylation, glycosylation, signaling
protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
laevis}
Length = 316
Score = 221 bits (562), Expect = 6e-70
Identities = 104/366 (28%), Positives = 160/366 (43%), Gaps = 68/366 (18%)
Query: 14 LKARLLEICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLLKKSMKKVLQRGKLYSD 73
+ L+ K ++ G G +EC+YQF RWNC +
Sbjct: 4 VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPESTLQLATH--------- 54
Query: 74 LYGDIDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGKIKQDSKETSFVNAVISAGV 133
++ ++ETSFV+A+ SAGV
Sbjct: 55 ---------------------------------------NGLRSATRETSFVHAISSAGV 75
Query: 134 TYTLTKACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEGCSDNLQYGLRKAKTFMNVGS 193
YTLT+ C+ G NC C + G+ W W GCSDN ++G R +K F++
Sbjct: 76 MYTLTRNCSMGDFDNCGCDDSRNGRIGGRG-----WVWGGCSDNAEFGERISKLFVDGLE 130
Query: 194 LEMGDLKSLTMHHNLEAGRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRNVGNTLKK 253
D ++L HN EAGRL + ++M+ CKCHG SGSC+++TCW L FR++GN LK
Sbjct: 131 TG-QDARALMNLHNNEAGRLAVKETMKRTCKCHGISGSCSIQTCWLQLAEFRDIGNHLKI 189
Query: 254 RFRSSIRVVPS-------NDGHSFVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGT 306
+ ++++ N + I+ +L++ E SP++C +N + G GT
Sbjct: 190 KHDQALKLEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSPDYCLKNISLGLQGT 249
Query: 307 YGREC-----TMNSSATESCSHMCCGRGYKTDENIEYV--RCNCSFKFCCDVVCDTCAKK 359
GREC ++ SC +C G + +E + CNC F +CC V C+ C +
Sbjct: 250 EGRECLQSGKNLSQWERRSCKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQV 309
Query: 360 TFIHHC 365
H C
Sbjct: 310 VIKHFC 315
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 44.2 bits (103), Expect = 9e-06
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 58 KKSMKKVLQRGKLYSDLYGDIDSKETSFVNAVI 90
K+++KK+ KLY+D DS + A +
Sbjct: 19 KQALKKLQASLKLYAD-----DSAPALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 7e-04
Identities = 64/445 (14%), Positives = 121/445 (27%), Gaps = 167/445 (37%)
Query: 3 DPTVICKKTRRLK----ARLL---EICKNEPAVLFE-ISRG-------------IDMGTK 41
+ T + K +K AR++ K + LF + G D +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 42 ECQYQFRNRRWNCTLLKKSMKKVLQR--------GKLYS---DLYGDIDSKETS-----F 85
E + ++ L K + L K+++ ++ +++ +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 86 VNAVISA---GVT----YTLTKAC-----TKGSLLNCECGKIKQDSKETSFVNAVISAGV 133
++ IS GV Y +T T G L + G T +++A
Sbjct: 232 LSIPISCPLIGVIQLAHYVVT--AKLLGFTPGELRSYLKGA-------TGHSQGLVTAVA 282
Query: 134 T---------YTLT-KACTKGSLLNCECGKIKQGKNLKPDNSNLPWKWEGCSDNLQYGLR 183
+ KA T + C + +L P D+L+
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL---------EDSLENN-E 332
Query: 184 KAKTFM-NVGSLEMGDLKSLTMHHNL---EAGRLVIGKSMQTECKCHGFSGSCTLRTCWR 239
+ M ++ +L ++ N ++ I
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI------------------------ 368
Query: 240 SL--GPFRNV---GNT-----LKKRFRSSIRVVPSND-------------GHSFVPIS-- 274
SL G +N+ G L R + D + F+P++
Sbjct: 369 SLVNGA-KNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 275 ------KTVKPPDKMDLVYSEIS--------PNFCTEN-----KTTGSLGTYGREC---- 311
DLV + +S P + T + +GS+ +C
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 312 ------TMNSSATESCSHM-CCGRG 329
T AT H+ G G
Sbjct: 487 PVKWETTTQFKAT----HILDFGPG 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.12
Identities = 44/354 (12%), Positives = 85/354 (24%), Gaps = 118/354 (33%)
Query: 36 IDMGTKECQYQFRNRRWNCTLLKKSMKKVLQRGKLYSDLYGDIDSKETS-FVNAVISAGV 94
+D T E QYQ+ K +L + D K+ +++S
Sbjct: 7 MDFETGEHQYQY--------------KDILS--VFEDAFVDNFDCKDVQDMPKSILS--- 47
Query: 95 TYTLTKACTKGSLLNCECGKI-KQDSKETSFVNAVISAGVTYTLTKACTKGSLLNCECGK 153
E I + G +K +
Sbjct: 48 --------------KEEIDHIIMSKDAVS---------GTLRLFWTLLSKQE-------E 77
Query: 154 IKQ---GKNLKPDNSNLPWKWEGCSDNLQYGLRKAKTFMNVGSLEMGDLKSLTMHHNLEA 210
+ Q + L+ N + + + ++ D + ++
Sbjct: 78 MVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---- 130
Query: 211 GRLVIGKSMQTECKCHGFSGSCTLRTCWRSLGPFRNV--------GNT-LKKRFRSSIRV 261
V + LR L P +NV G T + S +V
Sbjct: 131 ---VSRLQPYLK-----------LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 262 VPSNDGHSF-VPISKTVKPPDKMDLV---YSEISPNFCTENKTTGSLGTYGRECTMNSSA 317
D F + + P ++++ +I PN+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT---------------------- 214
Query: 318 TESCSHMCCGRGYKTDENIEYVR---CNCSFKFCCDV---VCDTCAKKTFIHHC 365
H + + +R + ++ C V V + A F C
Sbjct: 215 -SRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint
center for structural genomics, JCSG; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 394
Score = 29.3 bits (66), Expect = 2.2
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 21 ICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLL 57
I +N+ + E+ I GT+E R+
Sbjct: 109 IGRNKNLIPGEVLAAIINGTEEVLQMLRDNGIGIYST 145
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 27.1 bits (60), Expect = 2.3
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 9 KKTRRLKAR---LLE-----ICKN-EPAVLFEISRGIDMGTKECQYQFRNRR 51
K + K LE + K + L +S+ +D ++ Q FR+RR
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRR 61
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 28.6 bits (64), Expect = 3.9
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 266 DGHSFVPISKTVKPPDKMDLVYSEISPNFCTENKTTGSLGTYGRECTM 313
DG S +P +P D ++ E ++ LG +C++
Sbjct: 419 DGLSLLPFLSEGRPQDWRTELHYEYDFRDVYYSEPQSFLGLGMNDCSL 466
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 28.0 bits (61), Expect = 5.7
Identities = 5/75 (6%), Positives = 14/75 (18%)
Query: 291 SPNFCTENKTTGSLGTYGRECTMNSSATESCSHMCCGRGYKTDENIEYVRCNCSFKFCCD 350
+ ++ S+ + S C + Y+ C
Sbjct: 55 GACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCFLLGPTQ 114
Query: 351 VVCDTCAKKTFIHHC 365
+ +
Sbjct: 115 LTQRLPVSRQECPRQ 129
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural
genomics, joint center for structural genomics; HET: MSE
PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Length = 389
Score = 27.8 bits (62), Expect = 7.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 21 ICKNEPAVLFEISRGIDMGTKECQYQFRNRRWNCTLL 57
I +N+ V E+ I GT E + R C
Sbjct: 108 IGRNKLLVPGEVISAIINGTDELLAELREMGVGCYAT 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,381,638
Number of extensions: 304938
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 48
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)